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This includes two major features: 1. HTML view of CDA documents 2. simpletransformers-based NLP pipeline
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Pmap Interface for Nlp Experimentation
© 2019 The Johns Hopkins University Applied Physics Laboratory LLC.
Cypress
The GUI test cases are written using Cypress (https://www.cypress.io/).
The actual test cases can be seen in tests/cypress/integration/.
PyTest
The python unit test cases are writting using PyTest (https://docs.pytest.org/).
The actual test cases can be seen in tests/pytest/.
Running in developer environment
pipenv install --dev
pushd tests
npm install
Then, when the dev stack is running:
./open_with_dev_stack.sh [--pytest|--cyptress]
This will either run pytest or open the cypress dashboard.
Note that running with the dev stack is noticably slower than running with the docker-compose stack.
You should also be sure to freshly import the testing data before you run the tests
(./setup_test_data.sh), as the tests may add data to the database that will mess up future runs.
Running with docker
To run with docker, a standalone container is built with the cypress code in it.
To build the docker container(s), run
./build.sh
This will build the entire docker-compose stack and import the test data into a test database (not the same one as running normal docker-compose).
To run the docker-compose stack and then the standalone cypress container, you can then run
./run_docker_compose.sh <arguments>
For usage instructions, run the script with no arguments.
It is also possible to run the cypress container directly, as long as you set the following environment variables:
CYPRESS_BASE_URL: the URI to the frontendCYPRESS_API_URL: the URI to the backend