/* * The MIT License * Copyright © 2025 Johns Hopkins University Applied Physics Laboratory * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in * all copies or substantial portions of the Software. * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ package terrasaur.apps; import java.io.IOException; import java.util.Arrays; import java.util.List; import java.util.Map; import org.apache.commons.cli.CommandLine; import org.apache.commons.cli.Option; import org.apache.commons.cli.Options; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import terrasaur.templates.TerrasaurTool; import terrasaur.utils.batch.BatchSubmitFactory; import terrasaur.utils.batch.BatchSubmitI; import terrasaur.utils.batch.BatchType; import terrasaur.utils.batch.GridType; public class BatchSubmit implements TerrasaurTool { private static final Logger logger = LogManager.getLogger(); @Override public String shortDescription() { return "Run a command on a cluster."; } @Override public String fullDescription(Options options) { String footer = "\nRun a command on a cluster.\n"; return TerrasaurTool.super.fullDescription(options, "", footer); } private static Options defineOptions() { Options options = TerrasaurTool.defineOptions(); options.addOption( Option.builder("command") .required() .hasArgs() .desc("Required. Command(s) to run.") .build()); StringBuilder sb = new StringBuilder(); for (GridType type : GridType.values()) sb.append(String.format("%s ", type.name())); options.addOption( Option.builder("gridType") .hasArg() .desc("Grid type. Valid values are " + sb + ". Default is LOCAL.") .build()); options.addOption( Option.builder("workingDir") .hasArg() .desc("Working directory to run command. Default is current directory.") .build()); return options; } public static void main(String[] args) { TerrasaurTool defaultOBJ = new BatchSubmit(); Options options = defineOptions(); CommandLine cl = defaultOBJ.parseArgs(args, options); Map startupMessages = defaultOBJ.startupMessages(cl); for (MessageLabel ml : startupMessages.keySet()) logger.info(String.format("%s %s", ml.label, startupMessages.get(ml))); List cmdList = Arrays.asList(cl.getOptionValues("command")); BatchType batchType = BatchType.GRID_ENGINE; GridType gridType = cl.hasOption("gridType") ? GridType.valueOf(cl.getOptionValue("gridType")) : GridType.LOCAL; BatchSubmitI submitter = BatchSubmitFactory.getBatchSubmit(cmdList, batchType, gridType); String workingDir = ""; try { submitter.runBatchSubmitinDir(workingDir); } catch (InterruptedException | IOException e) { logger.error(e.getLocalizedMessage(), e); } } }