From ea5273067b2abcedcd408eba7b6ec3ce95ed3ce0 Mon Sep 17 00:00:00 2001
From: Mike Zimmerman <Michael.Zimmerman@jhuapl.edu>
Date: Wed, 9 Aug 2023 17:49:29 -0400
Subject: [PATCH] Added scripts subdir.

---
 scripts/args.default     |  1 +
 scripts/experimental.run | 53 ++++++++++++++++++++++++++++++++++++++++
 scripts/template.clean   |  6 +++++
 scripts/template.run     | 53 ++++++++++++++++++++++++++++++++++++++++
 4 files changed, 113 insertions(+)
 create mode 100644 scripts/args.default
 create mode 100755 scripts/experimental.run
 create mode 100755 scripts/template.clean
 create mode 100755 scripts/template.run

diff --git a/scripts/args.default b/scripts/args.default
new file mode 100644
index 0000000..22609d6
--- /dev/null
+++ b/scripts/args.default
@@ -0,0 +1 @@
+-tomlfile input.toml -restart 0 -nsteps 3000 -dmpstride 1000 -gcstride 25 -diagstride 25 -writegrid 32
diff --git a/scripts/experimental.run b/scripts/experimental.run
new file mode 100755
index 0000000..b9f2617
--- /dev/null
+++ b/scripts/experimental.run
@@ -0,0 +1,53 @@
+ENTRYPOINT=dragion.simulations.experimental.DragionExperimental
+ARGS=`cat args` 	#"-tomlfile input.toml -restart 0 -nsteps 3000 -dmpstride 1000 -gcstride 25 -diagstride 25 -writegrid 32"
+
+DRAGION_HOME=$HOME/workspace/dragion
+LESTAT_HOME=$HOME/workspace/lestat
+MOWGLI_HOME=$HOME/workspace/mowgli
+
+if [[ `uname` == Darwin ]]; then
+	VTK_LIB=$HOME/local/vtk-8.2/lib
+elif [[ `uname` == Linux ]]; then
+	VTK_LIB=$HOME/local/vtk-8.2/lib64
+fi
+EMBREE_LIB=$HOME/local/embree-3.13.4.x86_64.macosx/lib
+LIBS_PATH=$VTK_LIB:$EMBREE_LIB
+
+CLASSPATH_ENTRIES=()
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/commons-cli-1.5.0/commons-cli-1.5.0.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/tomlj-1.0.0/tomlj-1.0.0.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/antlr4-runtime-4.7.2/antlr4-runtime-4.7.2.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/jfreechart-1.5.3/jfreechart-1.5.3.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/commons-math3-3.6.1/commons-math3-3.6.1.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/guava-28.1/guava-28.1-jre.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/jna-5.4.0/jna-5.4.0.jar)
+CLASSPATH_ENTRIES+=($VTK_LIB/vtk.jar)
+CLASSPATH_ENTRIES+=($MOWGLI_HOME/embree/build)
+
+if [[ `uname` == Darwin ]]; then
+	# eclipse build
+	CLASSPATH_ENTRIES+=($DRAGION_HOME/bin)
+	CLASSPATH_ENTRIES+=($LESTAT_HOME/bin)
+	CLASSPATH_ENTRIES+=($MOWGLI_HOME/bin)
+elif [[ `uname` == Linux ]]; then
+	# ant build
+	CLASSPATH_ENTRIES+=($DRAGION_HOME/build)
+#	CLASSPATH_ENTRIES+=($JAVA_HOME/jre/lib/amd64)
+fi
+
+CLASSPATH=""
+for i in ${!CLASSPATH_ENTRIES[@]}; do
+	if [[ $i == 0 ]]; then
+		CLASSPATH=${CLASSPATH_ENTRIES[$i]}
+	else
+		CLASSPATH+=":${CLASSPATH_ENTRIES[$i]}"
+	fi
+done
+
+if [[ `uname` == Darwin ]]; then
+	JAVA=/Library/Java/JavaVirtualMachines/jdk-13.0.1.jdk/Contents/Home/bin/java
+	DYLD_LIBRARY_PATH=$LIBS_PATH $JAVA -Djava.library.path=$LIBS_PATH -classpath $CLASSPATH $ENTRYPOINT $ARGS
+elif [[ `uname` == Linux ]]; then
+	JAVA=java
+	LD_LIBRARY_PATH=$LIBS_PATH:$LD_LIBRARY_PATH $JAVA -Djava.library.path=$LIBS_PATH -classpath $CLASSPATH $ENTRYPOINT $ARGS
+fi
diff --git a/scripts/template.clean b/scripts/template.clean
new file mode 100755
index 0000000..9b93562
--- /dev/null
+++ b/scripts/template.clean
@@ -0,0 +1,6 @@
+rm -f *.diag
+rm -f *.vtr
+rm -f *.vtp
+rm -f log
+rm -f *.e*
+rm -f pid
diff --git a/scripts/template.run b/scripts/template.run
new file mode 100755
index 0000000..38c8ae1
--- /dev/null
+++ b/scripts/template.run
@@ -0,0 +1,53 @@
+ENTRYPOINT=dragion.simulations.DragionCarriers
+ARGS=`cat args` 	#"-tomlfile input.toml -restart 0 -nsteps 3000 -dmpstride 1000 -gcstride 25 -diagstride 25 -writegrid 32"
+
+DRAGION_HOME=$HOME/workspace/dragion
+LESTAT_HOME=$HOME/workspace/lestat
+MOWGLI_HOME=$HOME/workspace/mowgli
+
+if [[ `uname` == Darwin ]]; then
+	VTK_LIB=$HOME/local/vtk-8.2/lib
+elif [[ `uname` == Linux ]]; then
+	VTK_LIB=$HOME/local/vtk-8.2/lib64
+fi
+EMBREE_LIB=$HOME/local/embree-3.13.4.x86_64.macosx/lib
+LIBS_PATH=$VTK_LIB:$EMBREE_LIB
+
+CLASSPATH_ENTRIES=()
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/commons-cli-1.5.0/commons-cli-1.5.0.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/tomlj-1.0.0/tomlj-1.0.0.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/antlr4-runtime-4.7.2/antlr4-runtime-4.7.2.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/jfreechart-1.5.3/jfreechart-1.5.3.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/commons-math3-3.6.1/commons-math3-3.6.1.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/guava-28.1/guava-28.1-jre.jar)
+CLASSPATH_ENTRIES+=($DRAGION_HOME/lib/jna-5.4.0/jna-5.4.0.jar)
+CLASSPATH_ENTRIES+=($VTK_LIB/vtk.jar)
+CLASSPATH_ENTRIES+=($MOWGLI_HOME/embree/build)
+
+if [[ `uname` == Darwin ]]; then
+	# eclipse build
+	CLASSPATH_ENTRIES+=($DRAGION_HOME/bin)
+	CLASSPATH_ENTRIES+=($LESTAT_HOME/bin)
+	CLASSPATH_ENTRIES+=($MOWGLI_HOME/bin)
+elif [[ `uname` == Linux ]]; then
+	# ant build
+	CLASSPATH_ENTRIES+=($DRAGION_HOME/build)
+#	CLASSPATH_ENTRIES+=($JAVA_HOME/jre/lib/amd64)
+fi
+
+CLASSPATH=""
+for i in ${!CLASSPATH_ENTRIES[@]}; do
+	if [[ $i == 0 ]]; then
+		CLASSPATH=${CLASSPATH_ENTRIES[$i]}
+	else
+		CLASSPATH+=":${CLASSPATH_ENTRIES[$i]}"
+	fi
+done
+
+if [[ `uname` == Darwin ]]; then
+	JAVA=/Library/Java/JavaVirtualMachines/jdk-13.0.1.jdk/Contents/Home/bin/java
+	DYLD_LIBRARY_PATH=$LIBS_PATH $JAVA -Djava.library.path=$LIBS_PATH -classpath $CLASSPATH $ENTRYPOINT $ARGS
+elif [[ `uname` == Linux ]]; then
+	JAVA=java
+	LD_LIBRARY_PATH=$LIBS_PATH:$LD_LIBRARY_PATH $JAVA -Djava.library.path=$LIBS_PATH -classpath $CLASSPATH $ENTRYPOINT $ARGS
+fi