mirror of
https://github.com/JHUAPL/kaiju.git
synced 2026-01-08 22:58:05 -05:00
49 lines
1.3 KiB
Bash
49 lines
1.3 KiB
Bash
#!/bin/bash
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#PBS -N {{ job_name }}
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#PBS -A {{ account }}
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#PBS -q {{ queue }}
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#PBS -l job_priority={{ job_priority }}
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#PBS -l walltime={{ walltime }}
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#PBS -l select=4:ncpus=128:mpiprocs=2:ompthreads=64+1:ncpus=128:mpiprocs=1:ompthreads=128
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#PBS -j oe
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#PBS -m abe
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# Abort script on any error.
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set -e
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echo "Job $PBS_JOBID started at `date` on `hostname` in directory `pwd`."
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echo 'Loading modules.'
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module --force purge
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{%- for module in modules %}
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module load {{ module }}
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{%- endfor %}
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module list
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echo 'Setting up MAGE environment.'
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source {{ kaijuhome }}/scripts/setupEnvironment.sh
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echo 'Setting environment variables.'
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export OMP_NUM_THREADS=128
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export MPI_TYPE_DEPTH=32
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export KMP_STACKSIZE=128M
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echo 'The active environment variables are:'
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printenv
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# Move to the directory containing the compiled code.
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cd bin
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echo 'Copying input files.'
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test_inputs_dir="{{ mage_test_root }}/unit_test_inputs"
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cp "${test_inputs_dir}/bcwind.h5" .
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cp "${test_inputs_dir}/geo_mpi.xml" .
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cp "${test_inputs_dir}/lfmD.h5" .
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cp "${test_inputs_dir}/raijuconfig.h5" .
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echo 'Generating data for testing.'
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MPICOMMAND="mpiexec $KAIJUHOME/scripts/preproc/pinCpuCores.sh"
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$MPICOMMAND ./voltron_mpi.x cmiD_deep_8_genRes.xml >& cmiD_deep_8_genRes.out
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echo "Job $PBS_JOBID ended at `date` on `hostname` in directory `pwd`."
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