mirror of
https://github.com/JHUAPL/kaiju.git
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45 lines
1.1 KiB
Bash
45 lines
1.1 KiB
Bash
#!/bin/bash
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#PBS -N {{ job_name }}
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#PBS -A {{ account }}
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#PBS -q {{ queue }}
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#PBS -l job_priority={{ job_priority }}
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#PBS -l select=1:ncpus=128
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#PBS -l walltime={{ walltime }}
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#PBS -j oe
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#PBS -m abe
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# Abort script on any error.
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set -e
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echo "Job $PBS_JOBID started at `date` on `hostname` in directory `pwd`."
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echo 'Loading modules.'
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module --force purge
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{%- for module in modules %}
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module load {{ module }}
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{%- endfor %}
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echo 'The currently loaded modules are:'
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module list
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echo 'The active environment variables are:'
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printenv
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echo 'Copying pFUnit binaries.'
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pfunit_dir="{{ mage_test_root }}/pfunit/pFUnit-4.2.0/ifort-23-mpich-derecho"
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kaiju_external_dir="{{ kaijuhome }}/external"
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cp -rp "${pfunit_dir}/FARGPARSE-1.1" "${kaiju_external_dir}/"
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cp -rp "${pfunit_dir}/GFTL-1.3" "${kaiju_external_dir}/"
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cp -rp "${pfunit_dir}/GFTL_SHARED-1.2" "${kaiju_external_dir}/"
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cp -rp "${pfunit_dir}/PFUNIT-4.2" "${kaiju_external_dir}/"
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# Build the code.
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cmd="{{ cmake_cmd }} >& cmake.out"
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echo $cmd
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eval $cmd
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cmd="{{ make_cmd }} >& make.out"
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echo $cmd
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eval $cmd
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echo "Job $PBS_JOBID ended at `date` on `hostname` in directory `pwd`."
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