mirror of
https://github.com/JHUAPL/kaiju.git
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43 lines
1.1 KiB
Bash
43 lines
1.1 KiB
Bash
#!/bin/bash
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#PBS -N {{ job_name }}
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#PBS -A {{ account }}
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#PBS -q {{ queue }}
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#PBS -l job_priority={{ job_priority }}
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#PBS -l walltime={{ walltime }}
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#PBS -l select=1:ncpus=128:mpiprocs=8:ompthreads=16
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#PBS -j oe
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#PBS -m abe
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echo "Job $PBS_JOBID started at `date` on `hostname` in directory `pwd`."
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echo 'Loading modules.'
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module --force purge
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{%- for module in modules %}
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module load {{ module }}
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{%- endfor %}
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module list
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echo 'Setting up MAGE environment.'
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source {{ kaijuhome }}/scripts/setupEnvironment.sh
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echo 'Setting environment variables.'
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export OMP_NUM_THREADS=128
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export MPI_TYPE_DEPTH=32
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export KMP_STACKSIZE=128M
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echo 'The active environment variables are:'
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printenv
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echo 'Running non-MPI test cases.'
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./caseTests >& caseTests.out
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echo 'Non-MPI test cases complete.'
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echo | tail -n 3 ./caseTests.out
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echo 'Running MPI test cases.'
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MPICOMMAND="mpiexec $KAIJUHOME/scripts/preproc/pinCpuCores.sh"
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${MPICOMMAND} ./caseMpiTests >& caseMpiTests.out
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echo 'MPI test cases complete.'
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echo | tail -n 3 ./caseMpiTests.out
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echo "Job $PBS_JOBID ended at `date` on `hostname` in directory `pwd`."
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