mirror of
https://github.com/JHUAPL/kaiju.git
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489 lines
15 KiB
JSON
489 lines
15 KiB
JSON
{
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"version": "0.0.0",
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"simulation": {
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"job_name": {
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"LEVEL": "BASIC",
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"prompt": "Name to use for PBS job(s)",
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"default": "helio"
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},
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"wsa_file": {
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"LEVEL": "BASIC",
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"prompt": "Path to WSA boundary condition file to use",
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"default": "wsa.fits"
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},
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"start_date": {
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"LEVEL": "BASIC",
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"prompt": "Start date for simulation (yyyy-mm-ddThh:mm:ss)",
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"default": "2017-08-02T19:44:23"
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},
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"stop_date": {
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"LEVEL": "BASIC",
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"prompt": "Stop date for simulation (yyyy-mm-ddThh:mm:ss)",
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"default": "2017-08-02T21:44:23"
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},
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"use_segments": {
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"LEVEL": "BASIC",
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"prompt": "Do you want to split your job into multiple segments?",
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"default": "N",
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"valids": ["Y", "y", "N", "n"]
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},
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"segment_duration": {
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"LEVEL": "BASIC",
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"prompt": "Segment length in simulated hours"
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},
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"hpc_system": {
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"LEVEL": "BASIC",
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"prompt": "Name of HPC system",
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"default": "pleiades",
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"valids": ["derecho", "pleiades"]
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}
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},
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"pbs": {
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"_common": {
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"account_name": {
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"LEVEL": "BASIC",
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"prompt": "PBS account name"
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},
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"run_directory": {
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"LEVEL": "BASIC",
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"prompt": "Run directory",
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"default": "."
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},
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"kaiju_install_directory": {
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"LEVEL": "BASIC",
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"prompt": "Path to kaiju installation"
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},
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"kaiju_build_directory": {
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"LEVEL": "BASIC",
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"prompt": "Path to kaiju build directory"
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},
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"num_segments": {
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"LEVEL": "COMPUTED",
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"NOTE": "Number of sequential PBS jobs to submit for the run",
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"default": "1"
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}
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},
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"derecho": {
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"queue": {
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"LEVEL": "BASIC",
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"prompt": "PBS queue name",
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"default": "main",
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"valids": ["develop", "main"]
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},
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"walltime": {
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"LEVEL": "BASIC",
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"prompt": "WARNING: You are responsible for ensuring that the wall time is sufficient to run a segment of your simulation!\nRequested wall time for each PBS job segment (HH:MM:SS)",
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"default": "01:00:00"
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},
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"select": {
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"LEVEL": "EXPERT",
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"prompt": "Number of nodes to request",
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"default": "1"
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},
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"ncpus": {
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"LEVEL": "EXPERT",
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"prompt": "Number of cores per node",
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"default": "128"
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},
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"mpiprocs": {
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"LEVEL": "EXPERT",
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"prompt": "Number of MPI ranks per node",
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"default": "2"
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},
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"ompthreads": {
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"LEVEL": "EXPERT",
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"prompt": "Number of OMP threads per MPI rank",
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"default": "64"
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},
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"other": {
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"LEVEL": "EXPERT",
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"prompt": "Additional options for PBS -l",
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"default": ""
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},
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"modules": {
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"LEVEL": "EXPERT",
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"prompt": "Modules to load",
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"default": [
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"ncarenv/23.06",
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"cmake/3.26.3",
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"craype/2.7.20",
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"intel/2023.0.0",
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"geos/3.9.1",
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"ncarcompilers/1.0.0",
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"cray-mpich/8.1.25",
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"hdf5/1.12.2",
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"mkl/2023.0.0"
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]
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},
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"environment_variables": {
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"LEVEL": "EXPERT",
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"prompt": "Additional environment variable settings",
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"default": null
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},
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"mpiexec_command": {
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"LEVEL": "EXPERT",
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"prompt": "MPI command to launch run",
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"default": "mpiexec pinCpuCores.sh"
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}
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},
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"pleiades": {
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"queue": {
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"LEVEL": "BASIC",
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"prompt": "PBS queue name",
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"default": "normal",
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"valids": ["low", "normal", "long", "debug", "devel"]
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},
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"walltime": {
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"LEVEL": "BASIC",
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"prompt": "WARNING: You are responsible for ensuring that the wall time is sufficient to run a segment of your simulation!\nRequested wall time for each PBS job segment (HH:MM:SS)",
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"default": "01:00:00"
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},
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"select": {
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"LEVEL": "EXPERT",
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"prompt": "Number of nodes to request",
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"default": "1"
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},
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"ncpus": {
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"LEVEL": "EXPERT",
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"prompt": "Number of cores per node",
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"default": "28"
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},
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"mpiprocs": {
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"LEVEL": "EXPERT",
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"prompt": "Number of MPI ranks per node",
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"default": "2"
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},
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"ompthreads": {
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"LEVEL": "EXPERT",
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"prompt": "Number of OMP threads per MPI rank",
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"default": "14"
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},
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"other": {
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"LEVEL": "EXPERT",
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"prompt": "Additional options for PBS -l",
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"default": ":model=bro"
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},
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"modules": {
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"LEVEL": "EXPERT",
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"prompt": "Modules to load",
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"default": [
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"nas",
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"pkgsrc/2022Q1-rome",
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"comp-intel/2020.4.304",
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"mpi-hpe/mpt.2.23",
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"hdf5/1.8.18_mpt"
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]
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},
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"environment_variables": {
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"LEVEL": "EXPERT",
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"prompt": "Additional environment variable settings",
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"default": null
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},
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"mpiexec_command": {
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"LEVEL": "EXPERT",
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"prompt": "MPI command to launch run",
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"default": "mpiexec correctOMPenvironment.sh $nodefile omplace"
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}
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}
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},
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"wsa2gamera": {
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"Gamera": {
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"gameraGridFile": {
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"LEVEL": "EXPERT",
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"prompt": "GAMERA grid file",
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"default": "heliogrid.h5"
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},
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"GridDir": {
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"LEVEL": "EXPERT",
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"prompt": "Directory for GAMERA grid file"
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},
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"gameraIbcFile": {
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"LEVEL": "EXPERT",
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"prompt": "GAMERA inner boundary conditions file",
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"default": "innerbc.h5"
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},
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"IbcDir": {
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"LEVEL": "EXPERT",
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"prompt": "Directory for inner boundary conditions file"
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}
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},
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"Grid": {
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"tMin": {
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"LEVEL": "EXPERT",
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"prompt": "Minimum solar polar angle fraction ([0, 1]->[0, 2*pi])",
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"default": "0.1"
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},
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"tMax": {
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"LEVEL": "EXPERT",
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"prompt": "Maximum solar polar angle fraction ([0, 1]->[0, 2*pi])",
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"default": "0.9"
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},
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"Rin": {
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"LEVEL": "EXPERT",
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"prompt": "Radius of inner grid edge (Rsun)",
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"default": "21.5"
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},
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"Rout": {
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"LEVEL": "EXPERT",
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"prompt": "Radius of outer grid edge (Rsun)",
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"default": "220.0"
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},
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"Ni": {
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"LEVEL": "BASIC",
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"prompt": "Number of radial grid cells",
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"default": "128"
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},
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"Nj": {
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"LEVEL": "BASIC",
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"prompt": "Number of polar angle grid cells",
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"default": "64"
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},
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"Nk": {
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"LEVEL": "BASIC",
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"prompt": "Number of azimuthal angle grid cells",
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"default": "128"
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}
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},
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"WSA": {
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"wsafile": {
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"LEVEL": "EXPERT",
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"prompt": "Path to WSA FITS file",
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"default": "wsa.fits"
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},
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"density_temperature_infile": {
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"LEVEL": "EXPERT",
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"prompt": "Density and pressure in the file",
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"default": "no",
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"valids": ["yes", "no"]
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},
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"gauss_smooth_width": {
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"LEVEL": "EXPERT",
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"prompt": "Gaussian smoothing width (Rsun)",
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"default": "0"
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},
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"normalized": {
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"LEVEL": "EXPERT",
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"prompt": "Normalize values from WSA FITS file",
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"default": "no",
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"valids": ["yes", "no"]
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}
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},
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"Constants": {
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"gamma": {
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"LEVEL": "EXPERT",
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"prompt": "Solar wind adiabatic index (not used?)",
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"default": "1.5"
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},
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"Nghost": {
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"LEVEL": "EXPERT",
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"prompt": "Number of ghost cells for each dimension",
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"default": "4"
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},
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"Tsolar": {
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"LEVEL": "EXPERT",
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"prompt": "Solar rotation period (Earth days)",
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"default": "25.38"
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},
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"nCS": {
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"LEVEL": "EXPERT",
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"prompt": "Current sheet number density (cm^-3)",
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"default": "1100.0"
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},
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"TCS": {
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"LEVEL": "EXPERT",
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"prompt": "Current sheet temperature (K)",
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"default": "1.0e6"
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}
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},
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"Normalization": {
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"B0": {
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"LEVEL": "EXPERT",
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"prompt": "Solar wind magnetic field (Gauss, not used?)",
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"default": "1.0e-3"
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},
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"n0": {
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"LEVEL": "EXPERT",
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"prompt": "Solar wind number density (cm^-3, not used?)",
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"default": "200.0"
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}
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}
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},
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"gamera": {
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"sim": {
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"runid": {
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"LEVEL": "EXPERT",
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"prompt": "Run ID",
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"default": "helio"
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},
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"doH5g": {
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"LEVEL": "EXPERT",
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"prompt": "Use an existing HDF5 LFM grid file",
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"default": "T",
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"valids": ["T", "F"]
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},
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"H5Grid": {
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"LEVEL": "EXPERT",
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"prompt": "H5Grid",
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"default": "heliogrid.h5"
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},
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"icType": {
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"LEVEL": "EXPERT",
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"prompt": "icType",
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"default": "user"
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},
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"pdmb": {
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"LEVEL": "EXPERT",
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"prompt": "pdmb",
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"default": "1.0"
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},
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"rmeth": {
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"LEVEL": "EXPERT",
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"prompt": "rmeth",
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"default": "7UP"
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}
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},
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"time": {
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"tFin": {
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"LEVEL": "EXPERT",
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"prompt": "Time duration to simulate (hours)",
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"default": "200.0"
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}
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},
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"spinup": {
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"doSpin": {
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"LEVEL": "EXPERT",
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"prompt": "Use a spinup period",
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"default": "T",
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"valids": ["T", "t", "F", "f"]
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},
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"tSpin": {
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"LEVEL": "EXPERT",
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"prompt": "Spinup time duration (simulated hours)",
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"default": "200.0"
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},
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"tIO": {
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"LEVEL": "EXPERT",
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"prompt": "Simulated time (hours) to start screen output (negtive for output during spinup)",
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"default": "0.0"
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}
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},
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"output": {
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"dtOut": {
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"LEVEL": "EXPERT",
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"prompt": "Timestep slice output interval (simulated hours)",
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"default": "10.0"
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},
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"dtCon": {
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"LEVEL": "EXPERT",
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"prompt": "Cadence for status updates on screen in simulated hours",
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"default": "5.0"
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},
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"doTimer": {
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"LEVEL": "EXPERT",
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"prompt": "Code timing output enabled",
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"default": "F",
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"valids": ["T", "t", "F", "f"]
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}
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},
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"physics": {
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"doMHD": {
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"LEVEL": "EXPERT",
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"prompt": "doMHD",
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"default": "T",
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"valids": ["T", "t", "F", "f"]
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},
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"gamma": {
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"LEVEL": "EXPERT",
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"prompt": "gamma",
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"default": "1.5"
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}
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},
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"prob": {
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"Tsolar": {
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"LEVEL": "EXPERT",
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"prompt": "T_solar",
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"default": "25.38"
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}
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},
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"iPdir": {
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"N": {
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"LEVEL": "EXPERT",
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"prompt": "Number of MPI chunks in r-dimension",
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"default": "2"
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},
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"bcPeriodic": {
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"LEVEL": "EXPERT",
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"prompt": "bcPeriodic",
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"default": "F",
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"valids": ["T", "t", "F", "f"]
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}
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},
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"jPdir": {
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"N": {
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"LEVEL": "EXPERT",
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"prompt": "Number of MPI chunks in latitude dimension",
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"default": "2"
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},
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"bcPeriodic": {
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"LEVEL": "EXPERT",
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"prompt": "bcPeriodic",
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"default": "F",
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"valids": ["T", "t", "F", "f"]
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}
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},
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"kPdir": {
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"N": {
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"LEVEL": "EXPERT",
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"prompt": "Number of MPI chunks in longitude dimension",
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"default": "2"
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},
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"bcPeriodic": {
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"LEVEL": "EXPERT",
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"prompt": "bcPeriodic",
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"default": "T",
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"valids": ["T", "t", "F", "f"]
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}
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},
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"coupling": {
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"blockHalo": {
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"LEVEL": "EXPERT",
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"prompt": "(GAMERA) Block halo MPI",
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"default": {
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"derecho": "T",
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"pleiades": "F"
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},
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"valids": ["T", "F"]
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}
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},
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"restart": {
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"doRes": {
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"LEVEL": "INTERMEDIATE",
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"prompt": "Restart from a saved state",
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"default": "F",
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"valids": ["T", "F"]
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},
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"nRes": {
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"LEVEL": "INTERMEDIATE",
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"prompt": "Index of restart file to use (-1 for latest (XXXXX-symlink) restart file)",
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"default": "-1"
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},
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"dtRes": {
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"LEVEL": "INTERMEDIATE",
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"prompt": "Cadence for restart file generation in simulated seconds",
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"default": "1800"
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},
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"resID": {
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"LEVEL": "INTERMEDIATE",
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"prompt": "Run ID for restart step",
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"default": "helio"
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}
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}
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}
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}
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