mirror of
https://github.com/JHUAPL/kaiju.git
synced 2026-01-09 02:37:55 -05:00
167 lines
5.5 KiB
ReStructuredText
167 lines
5.5 KiB
ReStructuredText
Instructions for running TIEGCM benchmarks on Cheyenne
|
|
======================================================
|
|
|
|
Introduction
|
|
------------
|
|
|
|
These instructions are intended to be an update and augment to the standard
|
|
`TIEGCM Benchmark instructions <https://www.hao.ucar.edu/modeling/tgcm/tiegcm2.0/userguide/html/benchmarks.html>`_
|
|
that are bit dated and relate the yellowstone computer system. Using
|
|
repository tag TBD will get you the updates for the scripting system for
|
|
cheyenne.
|
|
|
|
In order to produce the graphics you will need to install the tgcmprocf90 code
|
|
base that utilizes NCAR graphics to produce plots. This needs to be run on
|
|
casper with specified set of modules.
|
|
|
|
Benchmark runs
|
|
--------------
|
|
|
|
The TIEGCM benchmarks fall into three categories
|
|
|
|
|
|
#. Full year climatologies (``run_climatology``)
|
|
#. Seasons (``run_seasons``)
|
|
#. Storms (``run_storms``)
|
|
|
|
for each category there is a tcsh script that creates run directories,
|
|
complies the code, and submits the jobs at 5 and 2.5 degree resolutions. These
|
|
scripts, located in the ``benchmarks`` subdirectory of the code distribution,
|
|
use the tgcmrun program which is written in python 2 to create the batch
|
|
scripts.
|
|
|
|
Compiling and running the code on cheyenne has been tested with the following
|
|
set of modules
|
|
|
|
.. code-block:: bash
|
|
|
|
Currently Loaded Modules:
|
|
1) git/2.22.0 5) ncarcompilers/0.5.0 9) mpt/2.25
|
|
2) ncarenv/1.3 6) mkl/2021.2 10) esmf_libs/8.3.0
|
|
3) cmake/3.14.4 7) conda/latest 11) esmf-8.3.0-ncdfio-mpt-O
|
|
4) intel/2021.2 8) netcdf/4.9.0
|
|
|
|
Visualizing the results
|
|
-----------------------
|
|
|
|
As previously mentioned to visualize the results we are currently utilizing an
|
|
older NCAR graphics package so the work will need to be conducted on casper
|
|
using a specific module and conda environment. We are working on python
|
|
utilities and will have that available shortly.
|
|
|
|
On casper you will need to have the following set of modules loaded.
|
|
|
|
.. code-block:: bash
|
|
|
|
Currently Loaded Modules:
|
|
1) ncarenv/1.2 6) conda/latest 11) esmf-8.3.0-ncdfio-mpiuni-O
|
|
2) ffmpeg/4.1.3 7) intel/19.1.1 12) ncl/6.6.2
|
|
3) git/2.22.0 8) ncarcompilers/0.5.0 13) nco/5.1.4
|
|
4) netcdf/4.9.1 9) openmpi/4.1.1
|
|
5) cmake/3.14.4 10) esmf_libs/8.3.0
|
|
|
|
and your conda environment can be created from this YML file
|
|
|
|
.. code-block:: yaml
|
|
|
|
name: tgcmproc
|
|
channels:
|
|
- conda-forge
|
|
- ncar
|
|
- r
|
|
dependencies:
|
|
- _libgcc_mutex=0.1=conda_forge
|
|
- _openmp_mutex=4.5=2_gnu
|
|
- backports=1.0=pyhd8ed1ab_3
|
|
- backports.functools_lru_cache=1.6.1=py_0
|
|
- backports_abc=0.5=py_1
|
|
- bzip2=1.0.8=h7f98852_4
|
|
- c-ares=1.19.1=hd590300_0
|
|
- ca-certificates=2023.5.7=hbcca054_0
|
|
- certifi=2019.11.28=py27h8c360ce_1
|
|
- cftime=1.1.1=py27h588f082_0
|
|
- curl=7.87.0=h6312ad2_0
|
|
- cycler=0.10.0=py_2
|
|
- dbus=1.13.6=hfdff14a_1
|
|
- enum34=1.1.10=py27h8c360ce_1
|
|
- expat=2.5.0=hcb278e6_1
|
|
- fontconfig=2.14.2=h14ed4e7_0
|
|
- freetype=2.12.1=hca18f0e_1
|
|
- functools32=3.2.3.2=py_3
|
|
- futures=3.3.0=py27h8c360ce_1
|
|
- gettext=0.21.1=h27087fc_0
|
|
- glib=2.66.3=h58526e2_0
|
|
- gst-plugins-base=1.14.5=h0935bb2_2
|
|
- gstreamer=1.14.5=h36ae1b5_2
|
|
- hdf4=4.2.15=h9772cbc_5
|
|
- hdf5=1.10.5=nompi_h7c3c948_1111
|
|
- icu=64.2=he1b5a44_1
|
|
- jpeg=9e=h0b41bf4_3
|
|
- keyutils=1.6.1=h166bdaf_0
|
|
- kiwisolver=1.1.0=py27h9e3301b_1
|
|
- krb5=1.20.1=hf9c8cef_0
|
|
- ld_impl_linux-64=2.40=h41732ed_0
|
|
- libblas=3.9.0=8_openblas
|
|
- libcblas=3.9.0=8_openblas
|
|
- libclang=9.0.1=default_hb4e5071_5
|
|
- libcurl=7.87.0=h6312ad2_0
|
|
- libedit=3.1.20191231=he28a2e2_2
|
|
- libev=4.33=h516909a_1
|
|
- libexpat=2.5.0=hcb278e6_1
|
|
- libffi=3.2.1=he1b5a44_1007
|
|
- libgcc-ng=12.2.0=h65d4601_19
|
|
- libgfortran-ng=7.5.0=h14aa051_20
|
|
- libgfortran4=7.5.0=h14aa051_20
|
|
- libglib=2.66.3=hbe7bbb4_0
|
|
- libgomp=12.2.0=h65d4601_19
|
|
- libiconv=1.17=h166bdaf_0
|
|
- liblapack=3.9.0=8_openblas
|
|
- libllvm9=9.0.1=default_hc23dcda_7
|
|
- libnetcdf=4.7.3=nompi_h9f9fd6a_101
|
|
- libnghttp2=1.51.0=hdcd2b5c_0
|
|
- libopenblas=0.3.12=pthreads_hb3c22a3_1
|
|
- libpng=1.6.39=h753d276_0
|
|
- libsqlite=3.42.0=h2797004_0
|
|
- libssh2=1.10.0=haa6b8db_3
|
|
- libstdcxx-ng=12.2.0=h46fd767_19
|
|
- libuuid=2.38.1=h0b41bf4_0
|
|
- libxcb=1.15=h0b41bf4_0
|
|
- libxkbcommon=0.10.0=he1b5a44_0
|
|
- libxml2=2.9.10=hee79883_0
|
|
- libzlib=1.2.13=h166bdaf_4
|
|
- matplotlib=2.2.5=ha770c72_3
|
|
- matplotlib-base=2.2.5=py27h250f245_1
|
|
- ncurses=6.3=h27087fc_1
|
|
- netcdf4=1.5.3=nompi_py27hd35fb8e_102
|
|
- nspr=4.35=h27087fc_0
|
|
- nss=3.89=he45b914_0
|
|
- numpy=1.16.5=py27h95a1406_0
|
|
- openssl=1.1.1t=h0b41bf4_0
|
|
- pcre=8.45=h9c3ff4c_0
|
|
- pip=20.1.1=pyh9f0ad1d_0
|
|
- pthread-stubs=0.4=h36c2ea0_1001
|
|
- pyparsing=2.4.7=pyh9f0ad1d_0
|
|
- pyqt=5.12.3=py27hcca6a23_1
|
|
- python=2.7.15=h5a48372_1011_cpython
|
|
- python-dateutil=2.8.1=py_0
|
|
- python_abi=2.7=1_cp27mu
|
|
- pytz=2020.1=pyh9f0ad1d_0
|
|
- qt=5.12.5=hd8c4c69_1
|
|
- readline=8.2=h8228510_1
|
|
- scipy=1.2.1=py27h921218d_2
|
|
- setuptools=44.0.0=py27_0
|
|
- singledispatch=3.6.1=pyh44b312d_0
|
|
- six=1.16.0=pyh6c4a22f_0
|
|
- sqlite=3.42.0=h2c6b66d_0
|
|
- subprocess32=3.5.4=py27h516909a_0
|
|
- tk=8.6.12=h27826a3_0
|
|
- tornado=5.1.1=py27h14c3975_1000
|
|
- wheel=0.37.1=pyhd8ed1ab_0
|
|
- xorg-libxau=1.0.11=hd590300_0
|
|
- xorg-libxdmcp=1.1.3=h7f98852_0
|
|
- xz=5.2.6=h166bdaf_0
|
|
- zlib=1.2.13=h166bdaf_4
|
|
- pip:
|
|
- pyqt5-sip==4.19.18
|
|
- pyqtwebengine==5.12.1
|