# Common Core Ontology Pipeline # Adapted from previous works; see header comments for full attribution. # Contact - John Beverley ### Explanation ### # The workflow involves two major steps: first, individual ontology files are checked and tested. # After passing, they are merged into a single file, which is then checked and tested again. # ---------------------------------------- # Project essentials config.ONTOLOGY_PREFIX := CCO config.BASE_IRI := https://www.commoncoreontologies.org/ config.DEV_IRI := $(config.BASE_IRI)/dev config.MODULES_IRI := $(config.DEV_IRI)/modules # Local project directories config.SOURCE_DIR := src/ config.TEMP_DIR := build/artifacts config.RELEASE_DIR := / config.REPORTS_DIR := $(config.TEMP_DIR) config.QUERIES_DIR := .github/deployment/sparql config.LIBRARY_DIR := build/lib # Settings config.FAIL_ON_TEST_FAILURES := false config.REPORT_FAIL_ON := none # Branch-specific configurations BRANCH := $(shell git rev-parse --abbrev-ref HEAD) # File names for dev branch DEV_FILES = \ src/cco-modules/AgentOntology.ttl \ src/cco-modules/ArtifactOntology.ttl \ src/cco-modules/CurrencyUnitOntology.ttl \ src/cco-modules/EventOntology.ttl \ src/cco-modules/ExtendedRelationOntology.ttl \ src/cco-modules/FacilityOntology.ttl \ src/cco-modules/GeospatialOntology.ttl \ src/cco-modules/QualityOntology.ttl \ src/cco-modules/UnitsOfMeasureOntology.ttl \ src/cco-modules/TimeOntology.ttl \ src/cco-modules/InformationEntityOntology.ttl # File for combined ontology combined-file := $(config.SOURCE_DIR)/MergedAllCoreOntology.ttl # Other constants TODAY := $(shell date +%Y-%m-%d) TIMESTAMP := $(shell date +'%Y-%m-%d %H:%M') # Default name for release config.RELEASE_NAME := $(config.ONTOLOGY_PREFIX) $(TIMESTAMP) # Generic files EDITOR_BUILD_FILE = $(combined-file) # "editors ontology module" EDITOR_REPORT_FILE = $(config.REPORTS_DIR)/$(config.ONTOLOGY_PREFIX)-edit-report.tsv # Generic directories to create if needed REQUIRED_DIRS = $(config.LIBRARY_DIR) $(config.SOURCE_DIR) $(config.QUERIES_DIR) $(config.REPORTS_DIR) # ---------------------------------------- #### Targets / main "goals" of this Makefile .PHONY: all all: setup reason-individual test-individual build-combined reason-combined test-combined # Setup target for creating necessary directories .PHONY: setup setup: mkdir -p $(REQUIRED_DIRS) src/ .github/deployment/sparql build/artifacts # Targets for dev branch - QC individual files and the combined file # Download ROBOT JAR ROBOT_FILE := $(config.LIBRARY_DIR)/robot.jar $(ROBOT_FILE): | $(config.LIBRARY_DIR) curl -L -o $@ https://github.com/ontodev/robot/releases/download/v1.8.4/robot.jar chmod +x $@ # Reason individual files .PHONY: reason-individual reason-individual: $(ROBOT_FILE) for file in $(DEV_FILES); do \ echo "Reasoning on $$file..."; \ java -jar $(ROBOT_FILE) reason --input $$file --catalog src/cco-modules/catalog-v001.xml --reasoner HermiT; \ done # Test individual files .PHONY: test-individual test-individual: $(ROBOT_FILE) for file in $(DEV_FILES); do \ echo "Testing $$file..."; \ java -jar $(ROBOT_FILE) verify --input $$file --output-dir $(config.REPORTS_DIR) --queries $(QUERIES) --fail-on-violation false || true; \ done # Build combined file after individual files pass checks $(combined-file): $(DEV_FILES) cat $(DEV_FILES) > $@ # Build and QC combined file .PHONY: build-combined build-combined: $(combined-file) .PHONY: reason-combined test-combined reason-combined: $(combined-file) | $(ROBOT_FILE) java -jar $(ROBOT_FILE) reason --input $(combined-file) --catalog src/cco-modules/catalog-v001.xml --reasoner HermiT test-combined: $(combined-file) | $(ROBOT_FILE) java -jar $(ROBOT_FILE) verify --input $(combined-file) --output-dir $(config.REPORTS_DIR) --queries $(QUERIES) --fail-on-violation false || true .PHONY: report-edit report-edit: TEST_INPUT = $(EDITOR_BUILD_FILE) report-edit: REPORT_FILE_INPUT = $(EDITOR_REPORT_FILE) report-edit: report .PHONY: output-release-filepath output-release-filepath: @echo $(combined-file) .PHONY: output-release-name output-release-name: @echo $(config.RELEASE_NAME) # ---------------------------------------- #### Test / test ontology with reasoners and queries QUERIES = $(wildcard $(config.QUERIES_DIR)/*.sparql) # Check for inconsistency .PHONY: reason reason: $(TEST_INPUT) | $(ROBOT_FILE) java -jar $(ROBOT_FILE) reason --input $(TEST_INPUT) --reasoner HermiT # Test using specific queries .PHONY: verify verify: $(TEST_INPUT) $(QUERIES) | $(config.QUERIES_DIR) $(config.REPORTS_DIR) $(ROBOT_FILE) ifeq ($(QUERIES),) $(warning No query files found in $(config.QUERIES_DIR)) else java -jar $(ROBOT_FILE) verify --input $(TEST_INPUT) --output-dir $(config.REPORTS_DIR) --queries $(QUERIES) --fail-on-violation false || true endif # Report using built-in ROBOT queries .PHONY: report report: $(TEST_INPUT) | $(config.REPORTS_DIR) $(ROBOT_FILE) java -jar $(ROBOT_FILE) report --input $(TEST_INPUT) \ --labels true \ --fail-on $(config.REPORT_FAIL_ON) \ --print 10 \ --output $(REPORT_FILE_INPUT) # ---------------------------------------- #### Setup / configure Make to use with our project MAKEFLAGS += --warn-undefined-variables SHELL := bash .SHELLFLAGS := -eu -o pipefail -c .DEFAULT_GOAL := all .DELETE_ON_ERROR: .SUFFIXES: .SECONDARY: # Create any of these directories if they don't exist $(REQUIRED_DIRS): mkdir -p $@ # Cleanup - Remove build and release files .PHONY: clean clean: @[ "${config.REPORTS_DIR}" ] || ( echo ">> config.REPORTS_DIR is not set"; exit 1 ) rm -rf $(config.REPORTS_DIR) rm -rf $(combined-file)