diff --git a/evaluation/benchmarks/EDA/run_infer.py b/evaluation/benchmarks/EDA/run_infer.py
index e8cee3df3e..b5a021a0b8 100644
--- a/evaluation/benchmarks/EDA/run_infer.py
+++ b/evaluation/benchmarks/EDA/run_infer.py
@@ -75,6 +75,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/agent_bench/run_infer.py b/evaluation/benchmarks/agent_bench/run_infer.py
index a64c66f22c..cf1dc6bba9 100644
--- a/evaluation/benchmarks/agent_bench/run_infer.py
+++ b/evaluation/benchmarks/agent_bench/run_infer.py
@@ -59,6 +59,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/aider_bench/run_infer.py b/evaluation/benchmarks/aider_bench/run_infer.py
index bc850dbc62..f0e86f3038 100644
--- a/evaluation/benchmarks/aider_bench/run_infer.py
+++ b/evaluation/benchmarks/aider_bench/run_infer.py
@@ -67,6 +67,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
 
     # copy 'draft_editor' config if exists
     config_copy = copy.deepcopy(config)
diff --git a/evaluation/benchmarks/biocoder/run_infer.py b/evaluation/benchmarks/biocoder/run_infer.py
index c33c75e5a2..ba8eb4d17b 100644
--- a/evaluation/benchmarks/biocoder/run_infer.py
+++ b/evaluation/benchmarks/biocoder/run_infer.py
@@ -73,6 +73,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/bird/run_infer.py b/evaluation/benchmarks/bird/run_infer.py
index 14946ebacb..45ddf582dc 100644
--- a/evaluation/benchmarks/bird/run_infer.py
+++ b/evaluation/benchmarks/bird/run_infer.py
@@ -86,6 +86,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/browsing_delegation/run_infer.py b/evaluation/benchmarks/browsing_delegation/run_infer.py
index 016b6c3f58..3313c9ff4c 100644
--- a/evaluation/benchmarks/browsing_delegation/run_infer.py
+++ b/evaluation/benchmarks/browsing_delegation/run_infer.py
@@ -50,6 +50,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/discoverybench/run_infer.py b/evaluation/benchmarks/discoverybench/run_infer.py
index 0d5b47410c..05ff440035 100644
--- a/evaluation/benchmarks/discoverybench/run_infer.py
+++ b/evaluation/benchmarks/discoverybench/run_infer.py
@@ -77,6 +77,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     agent_config = AgentConfig(
         function_calling=False,
         codeact_enable_jupyter=True,
diff --git a/evaluation/benchmarks/gaia/run_infer.py b/evaluation/benchmarks/gaia/run_infer.py
index 8aaa479e92..7974a09290 100644
--- a/evaluation/benchmarks/gaia/run_infer.py
+++ b/evaluation/benchmarks/gaia/run_infer.py
@@ -62,6 +62,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/gorilla/run_infer.py b/evaluation/benchmarks/gorilla/run_infer.py
index e453b1f570..740a3c3ada 100644
--- a/evaluation/benchmarks/gorilla/run_infer.py
+++ b/evaluation/benchmarks/gorilla/run_infer.py
@@ -55,6 +55,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/gpqa/run_infer.py b/evaluation/benchmarks/gpqa/run_infer.py
index 08e6682792..eb1c808ec8 100644
--- a/evaluation/benchmarks/gpqa/run_infer.py
+++ b/evaluation/benchmarks/gpqa/run_infer.py
@@ -76,6 +76,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/humanevalfix/run_infer.py b/evaluation/benchmarks/humanevalfix/run_infer.py
index b2fb6d677a..5ab5af818f 100644
--- a/evaluation/benchmarks/humanevalfix/run_infer.py
+++ b/evaluation/benchmarks/humanevalfix/run_infer.py
@@ -97,6 +97,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/logic_reasoning/run_infer.py b/evaluation/benchmarks/logic_reasoning/run_infer.py
index d84c5f8ca8..ee48f5ea76 100644
--- a/evaluation/benchmarks/logic_reasoning/run_infer.py
+++ b/evaluation/benchmarks/logic_reasoning/run_infer.py
@@ -61,6 +61,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/mint/run_infer.py b/evaluation/benchmarks/mint/run_infer.py
index a98fa8d918..61223572ae 100644
--- a/evaluation/benchmarks/mint/run_infer.py
+++ b/evaluation/benchmarks/mint/run_infer.py
@@ -119,6 +119,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/ml_bench/run_infer.py b/evaluation/benchmarks/ml_bench/run_infer.py
index 1c084fc149..7f15476423 100644
--- a/evaluation/benchmarks/ml_bench/run_infer.py
+++ b/evaluation/benchmarks/ml_bench/run_infer.py
@@ -92,6 +92,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/toolqa/run_infer.py b/evaluation/benchmarks/toolqa/run_infer.py
index 6f6f1a0e20..8586f9a7bb 100644
--- a/evaluation/benchmarks/toolqa/run_infer.py
+++ b/evaluation/benchmarks/toolqa/run_infer.py
@@ -56,6 +56,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config
 
 
diff --git a/evaluation/benchmarks/webarena/run_infer.py b/evaluation/benchmarks/webarena/run_infer.py
index ac51a201a7..c35c79ba2c 100644
--- a/evaluation/benchmarks/webarena/run_infer.py
+++ b/evaluation/benchmarks/webarena/run_infer.py
@@ -77,6 +77,8 @@ def get_config(
         workspace_mount_path=None,
     )
     config.set_llm_config(metadata.llm_config)
+    agent_config = config.get_agent_config(metadata.agent_class)
+    agent_config.use_microagents = False
     return config