* try to fix pip unavailable
* update test case for pip
* force rebuild in CI
* remove extra symlink
* fix newline
* added semi-colon to line 31
* Dockerfile.j2: activate env at the end
* Revert "Dockerfile.j2: activate env at the end"
This reverts commit cf2f565102.
* cleanup Dockerfile
* switch default python image
* remove image agnostic (no longer used)
* fix tests
* switch to nikolaik/python-nodejs:python3.11-nodejs22
* fix test
* fix test
* revert docker
* update template
---------
Co-authored-by: tobitege <tobitege@gmx.de>
Co-authored-by: Graham Neubig <neubig@gmail.com>
* switch default to eventstream runtime
* remove pull docker from makefile
* fix unittest
* fix file store path
* try deprecate server runtime
* remove persist sandbox
* move file utils
* remove server runtime related workflow
* remove unused method
* attempt to remove the reliance on filestore for BE
* fix async for list file
* fix list_files to post
* fix list files
* add suffix to directory
* make sure list file returns abs path;
make sure other backend endpoints accpets abs path
* remove server runtime test workflow
* set git config in runtime
* move multi-line bash tests to test_runtime;
support multi-line bash for esruntime;
* add testcase to handle PS2 prompt
* use bashlex for bash parsing to handle multi-line commands;
add testcases for multi-line commands
* revert ghcr runtime change
* Apply stash
* fix run as other user;
make test async;
* fix test runtime for run as od
* add run-as-devin to all the runtime tests
* handle the case when username is root
* move all run-as-devin tests from sandbox;
only tests a few cases on different user to save time;
* move over multi-line echo related tests to test_runtime
* fix user-specific jupyter by fixing the pypoetry virtualenv folder
* make plugin's init async;
chdir at initialization of jupyter plugin;
move ipy simple testcase to test runtime;
* support agentskills import in
move tests for jupyter pwd tests;
overload `add_env_vars` for EventStreamRuntime to update env var also in Jupyter;
make agentskills read env var lazily, in case env var is updated;
* fix ServerRuntime agentskills issue
* move agnostic image test to test_runtime
* merge runtime tests in CI
* fix enable auto lint as env var
* update warning message
* update warning message
* test for different container images
* change parsing output as debug
* add exception handling for update_pwd_decorator
* fix unit test indentation
* add plugins as default input to Runtime class;
remove init_sandbox_plugins;
implement add_env_var (include jupyter) in the base class;
* fix server runtime auto lint
* Revert "add exception handling for update_pwd_decorator"
This reverts commit 2b668b1506.
* tries to print debugging info for agentskills
* explictly setting uid (try fix permission issue)
* Revert "tries to print debugging info for agentskills"
This reverts commit 8be4c86756.
* set sandbox user id during testing to hopefully fix the permission issue
* add browser tools for server runtime
* try to debug for old pwd
* update debug cmd
* only test agnostic runtime when TEST_RUNTIME is Server
* fix temp dir mkdir
* load TEST_RUNTIME at the beginning
* remove ipython tests
* only log to file when DEBUG
* default logging to project root
* temporarily remove log to file
* fix LLM logger dir
* fix logger
* make set pwd an optional aux action
* fix prev pwd
* fix infinity recursion
* simplify
* do not import the whole od library to avoid logger folder by jupyter
* fix browsing
* increase timeout
* attempt to fix agentskills yet again
* clean up in testcases, since CI maybe run as non-root
* add _cause attribute for event.id
* remove parent
* add a bunch of debugging statement again for CI :(
* fix temp_dir fixture
* change all temp dir to follow pytest's tmp_path_factory
* remove extra bracket
* clean up error printing a bit
* jupyter chdir to self.config.workspace_mount_path_in_sandbox on initialization
* jupyter chdir to self.config.workspace_mount_path_in_sandbox on initialization
* add typing for tmp dir fixture
* clear the directory before running the test to avoid weird CI temp dir
* remove agnostic test case for server runtime
* Revert "remove agnostic test case for server runtime"
This reverts commit 30e2181c3f.
* disable agnostic tests in CI
* fix test
* make sure plugin arg is not passed when no plugin is specified;
remove redundant on_event function;
* move mock prompt
* rename runtime
* remove extra logging
* refactor run_controller's interface;
support multiple runtime for integration test;
filter out hostname for prompt
* uncomment other tests
* pass the right runtime to controller
* log runtime when start
* uncomment tests
* improve symbol filters
* add intergration test prompts that seemd ok
* add integration test workflow
* add python3 to default ubuntu image
* symlink python and fix permission to jupyter pip
* add retry for jupyter execute server
* fix jupyter pip install;
add post-process for jupyter pip install;
simplify init by add agent_skills path to PYTHONPATH;
add testcase to tests jupyter pip install;
* fix bug
* use ubuntu:22.04 for eventstream integration tests
* add todo
* update testcase
* remove redundant code
* fix unit test
* reduce dependency for runtime
* try making llama-index an optional dependency that's not installed by default
* remove pip install since it seemd not needed
* log ipython execution;
await write message since it returns a future
* update ipy testcase
* do not install llama-index in CI
* do not install llama-index in the app docker as well
* set sandbox container image in the integration test script
* log plugins & env var for runtime
* update conftest for sha256
* add git
* remove all non-alphanumeric chalracters
* add working ipy module tests!
* default to use host network
* remove is_async from browser to make thing a little more reliable;
retry loading browser when error;
* add sleep to wait a bit for http server
* kill http server before regenerate browsing tests
* fix browsing
* only set sandbox container image if undefined
* skip empty config value
* update evaluation to use the latest run_controller
* revert logger in execute_server to be compatible with server runtime
* revert logging level to fix jupyter
* set logger level
* revert the logging
* chmod for workspace to fix permission
* support getting timeout from action
* update test for server runtime
* try to fix file permission
* fix test_cmd_run_action_serialization_deserialization test (added timeout)
* poetry: pip 24.2, torch 2.2.2
* revert adding pip to pyproject.toml
* add build to dependencies in pyproject.toml
* forgot poetry lock --no-update
* fix a DelegatorAgent prompt_002.log (timeout)
* fix a DelegatorAgent prompt_003.log (timeout)
* couple more timeout attribs in prompt files
* some more prompt files
* prompts galore
* add clarification comment for timeout
* default timeout to config
* add assert
* update integraton tests for eventstream
* update integration tests
* fix timeout for action<->dict
* remove redundant on_event
* default to use instance image
* update run_controller interface
* add logging for copy
* refactor swe_bench for the new design
* fix action execution timeout
* updatelock
* remove build sandbox locally
* fix runtime
* use plain for-loop for single process
* remove extra print
* get swebench inference working
* print whole `test_result` dict
* got swebench patch post-process working
* update swe-bench evaluation readme
* refactor using shared reset_logger function
* move messy swebench prompt to a different file
* support the ability to specify whether to keep prompt
* support the ability to specify whether to keep prompt
* fix dockerfile
* fix import and remove unnecessary strip logic
* fix action serialization
* get agentbench running
* remove extra ls for agent bench
* fix agentbench metric
* factor out common documentation for eval
* update biocoder doc
* remove swe_env_box since it is no longer needed
* get biocoder working
* add func timeout for bird
* fix jupyter pwd with ~ as user name
* fix jupyter pwd with ~ as user name
* get bird working
* get browsing evaluation working
* make eda runnable
* fix id column
* fix eda run_infer
* unify eval output using a structured format;
make swebench coompatible with that format;
update client source code for every swebench run;
do not inject testcmd for swebench
* standardize existing benchs for the new eval output
* set update source code = true
* get gaia standardized
* fix gaia
* gorilla refactored but stuck at language.so to test
* refactor and make gpqa work
* refactor humanevalfix and get it working
* refactor logic reasoning and get it working
* refactor browser env so it works with eventstream runtime for eval
* add initial version of miniwob refactor
* fix browsergym environment
* get miniwob working!!
* allowing injecting additional dependency to OD runtime docker image
* allowing injecting additional dependency to OD runtime docker image
* support logic reasoning with pre-injected dependency
* get mint working
* update runtime build
* fix mint docker
* add test for keep_prompt;
add missing await close for some tests
* update integration tests for eventstream runtime
* fix integration tests for server runtime
* refactor ml bench and toolqa
* refactor webarena
* fix default factory
* Update run_infer.py
* add APIError to retry
* increase timeout for swebench
* make sure to hide api key when dump eval output
* update the behavior of put source code to put files instead of tarball
* add dishash to dependency
* sendintr when timeout
* fix dockerfile copy
* reduce timeout
* use dirhash to avoid repeat building for update source
* fix runtime_build testcase
* add dir_hash to docker build pipeline
* revert api error
* update poetry lock
* add retries for swebench run infer
* fix git patch
* update poetry lock
* adjust config order
* fix mount volumns
* enforce all eval to use "instance_id"
* remove file store from runtime
* make file_store public inside eventstream
* move the runtime logic inside `main` out
* support using async function for process_instance_fn
* refactor run_infer with the create_time
* fix file store
* Update evaluation/toolqa/utils.py
Co-authored-by: Graham Neubig <neubig@gmail.com>
* fix typo
---------
Co-authored-by: tobitege <tobitege@gmx.de>
Co-authored-by: super-dainiu <78588128+super-dainiu@users.noreply.github.com>
Co-authored-by: Graham Neubig <neubig@gmail.com>
* update the behavior of put source code to put files instead of tarball
* add dishash to dependency
* fix dockerfile copy
* use dirhash to avoid repeat building for update source
* fix runtime_build testcase
* add dir_hash to docker build pipeline
* add additional tests for source directory
* add comment
* clear the assertion by explictly check existing files
* also assert od is a dir
* Remove global config from memory
* Remove runtime global config
* Remove from storage
* Remove global config
* Fix event stream tests
* Fix sandbox issue
* Change config
* Removed transferred tests
* Add swe env box
* Fixes on testing
* Fixed some tests
* Merge with stashed changes
* Fix typing
* Fix ipython test
* Revive function
* Make temp_dir fixture
* Remove test to avoid circular import
* fix eventstream filestore for test_runtime
* fix parse arg issue that cause integration test to fail
* support swebench pull from custom namespace
* add back simple tests for runtime
* move multi-line bash tests to test_runtime;
support multi-line bash for esruntime;
* add testcase to handle PS2 prompt
* use bashlex for bash parsing to handle multi-line commands;
add testcases for multi-line commands
* revert ghcr runtime change
* Apply stash
* fix run as other user;
make test async;
* fix test runtime for run as od
* add run-as-devin to all the runtime tests
* handle the case when username is root
* move all run-as-devin tests from sandbox;
only tests a few cases on different user to save time;
* move over multi-line echo related tests to test_runtime
* fix user-specific jupyter by fixing the pypoetry virtualenv folder
* make plugin's init async;
chdir at initialization of jupyter plugin;
move ipy simple testcase to test runtime;
* support agentskills import in
move tests for jupyter pwd tests;
overload `add_env_vars` for EventStreamRuntime to update env var also in Jupyter;
make agentskills read env var lazily, in case env var is updated;
* fix ServerRuntime agentskills issue
* move agnostic image test to test_runtime
* merge runtime tests in CI
* fix enable auto lint as env var
* update warning message
* update warning message
* test for different container images
* change parsing output as debug
* add exception handling for update_pwd_decorator
* fix unit test indentation
* add plugins as default input to Runtime class;
remove init_sandbox_plugins;
implement add_env_var (include jupyter) in the base class;
* fix server runtime auto lint
* Revert "add exception handling for update_pwd_decorator"
This reverts commit 2b668b1506.
* tries to print debugging info for agentskills
* explictly setting uid (try fix permission issue)
* Revert "tries to print debugging info for agentskills"
This reverts commit 8be4c86756.
* set sandbox user id during testing to hopefully fix the permission issue
* add browser tools for server runtime
* try to debug for old pwd
* update debug cmd
* only test agnostic runtime when TEST_RUNTIME is Server
* fix temp dir mkdir
* load TEST_RUNTIME at the beginning
* remove ipython tests
* only log to file when DEBUG
* default logging to project root
* temporarily remove log to file
* fix LLM logger dir
* fix logger
* make set pwd an optional aux action
* fix prev pwd
* fix infinity recursion
* simplify
* do not import the whole od library to avoid logger folder by jupyter
* fix browsing
* increase timeout
* attempt to fix agentskills yet again
* clean up in testcases, since CI maybe run as non-root
* add _cause attribute for event.id
* remove parent
* add a bunch of debugging statement again for CI :(
* fix temp_dir fixture
* change all temp dir to follow pytest's tmp_path_factory
* remove extra bracket
* clean up error printing a bit
* jupyter chdir to self.config.workspace_mount_path_in_sandbox on initialization
* jupyter chdir to self.config.workspace_mount_path_in_sandbox on initialization
* add typing for tmp dir fixture
* clear the directory before running the test to avoid weird CI temp dir
* remove agnostic test case for server runtime
* Revert "remove agnostic test case for server runtime"
This reverts commit 30e2181c3f.
* disable agnostic tests in CI
* fix test
* make sure plugin arg is not passed when no plugin is specified;
remove redundant on_event function;
* move mock prompt
* rename runtime
* remove extra logging
* refactor run_controller's interface;
support multiple runtime for integration test;
filter out hostname for prompt
* uncomment other tests
* pass the right runtime to controller
* log runtime when start
* uncomment tests
* improve symbol filters
* add intergration test prompts that seemd ok
* add integration test workflow
* add python3 to default ubuntu image
* symlink python and fix permission to jupyter pip
* add retry for jupyter execute server
* fix jupyter pip install;
add post-process for jupyter pip install;
simplify init by add agent_skills path to PYTHONPATH;
add testcase to tests jupyter pip install;
* fix bug
* use ubuntu:22.04 for eventstream integration tests
* add todo
* update testcase
* remove redundant code
* fix unit test
* reduce dependency for runtime
* try making llama-index an optional dependency that's not installed by default
* remove pip install since it seemd not needed
* log ipython execution;
await write message since it returns a future
* update ipy testcase
* do not install llama-index in CI
* do not install llama-index in the app docker as well
* set sandbox container image in the integration test script
* log plugins & env var for runtime
* update conftest for sha256
* add git
* remove all non-alphanumeric chalracters
* add working ipy module tests!
* default to use host network
* remove is_async from browser to make thing a little more reliable;
retry loading browser when error;
* add sleep to wait a bit for http server
* kill http server before regenerate browsing tests
* fix browsing
* only set sandbox container image if undefined
* skip empty config value
* update evaluation to use the latest run_controller
* revert logger in execute_server to be compatible with server runtime
* revert logging level to fix jupyter
* set logger level
* revert the logging
* chmod for workspace to fix permission
* support getting timeout from action
* update test for server runtime
* try to fix file permission
* fix test_cmd_run_action_serialization_deserialization test (added timeout)
* poetry: pip 24.2, torch 2.2.2
* revert adding pip to pyproject.toml
* add build to dependencies in pyproject.toml
* forgot poetry lock --no-update
* fix a DelegatorAgent prompt_002.log (timeout)
* fix a DelegatorAgent prompt_003.log (timeout)
* couple more timeout attribs in prompt files
* some more prompt files
* prompts galore
* add clarification comment for timeout
* default timeout to config
* add assert
* update integraton tests for eventstream
* update integration tests
* fix timeout for action<->dict
* remove redundant on_event
* fix action execution timeout
* updatelock
---------
Co-authored-by: Graham Neubig <neubig@gmail.com>
Co-authored-by: tobitege <tobitege@gmx.de>
* reduce dependency for runtime
* try making llama-index an optional dependency that's not installed by default
* do not install llama-index in CI
* do not install llama-index in the app docker as well
* Remove global config from memory
* Remove runtime global config
* Remove from storage
* Remove global config
* Fix event stream tests
* Fix sandbox issue
* Change config
* Removed transferred tests
* Add swe env box
* Fixes on testing
* Fixed some tests
* Merge with stashed changes
* Fix typing
* Fix ipython test
* Revive function
* Make temp_dir fixture
* Remove test to avoid circular import
* fix eventstream filestore for test_runtime
* fix parse arg issue that cause integration test to fail
* support swebench pull from custom namespace
* add back simple tests for runtime
* move multi-line bash tests to test_runtime;
support multi-line bash for esruntime;
* add testcase to handle PS2 prompt
* use bashlex for bash parsing to handle multi-line commands;
add testcases for multi-line commands
* revert ghcr runtime change
* Apply stash
* fix run as other user;
make test async;
* fix test runtime for run as od
* add run-as-devin to all the runtime tests
* handle the case when username is root
* move all run-as-devin tests from sandbox;
only tests a few cases on different user to save time;
* move over multi-line echo related tests to test_runtime
* fix user-specific jupyter by fixing the pypoetry virtualenv folder
* make plugin's init async;
chdir at initialization of jupyter plugin;
move ipy simple testcase to test runtime;
* support agentskills import in
move tests for jupyter pwd tests;
overload `add_env_vars` for EventStreamRuntime to update env var also in Jupyter;
make agentskills read env var lazily, in case env var is updated;
* fix ServerRuntime agentskills issue
* move agnostic image test to test_runtime
* merge runtime tests in CI
* fix enable auto lint as env var
* update warning message
* update warning message
* test for different container images
* change parsing output as debug
* add exception handling for update_pwd_decorator
* fix unit test indentation
* add plugins as default input to Runtime class;
remove init_sandbox_plugins;
implement add_env_var (include jupyter) in the base class;
* fix server runtime auto lint
* Revert "add exception handling for update_pwd_decorator"
This reverts commit 2b668b1506.
* tries to print debugging info for agentskills
* explictly setting uid (try fix permission issue)
* Revert "tries to print debugging info for agentskills"
This reverts commit 8be4c86756.
* set sandbox user id during testing to hopefully fix the permission issue
* add browser tools for server runtime
* try to debug for old pwd
* update debug cmd
* only test agnostic runtime when TEST_RUNTIME is Server
* fix temp dir mkdir
* load TEST_RUNTIME at the beginning
* remove ipython tests
* only log to file when DEBUG
* default logging to project root
* temporarily remove log to file
* fix LLM logger dir
* fix logger
* make set pwd an optional aux action
* fix prev pwd
* fix infinity recursion
* simplify
* do not import the whole od library to avoid logger folder by jupyter
* fix browsing
* increase timeout
* attempt to fix agentskills yet again
* clean up in testcases, since CI maybe run as non-root
* add _cause attribute for event.id
* remove parent
* add a bunch of debugging statement again for CI :(
* fix temp_dir fixture
* change all temp dir to follow pytest's tmp_path_factory
* remove extra bracket
* clean up error printing a bit
* jupyter chdir to self.config.workspace_mount_path_in_sandbox on initialization
* jupyter chdir to self.config.workspace_mount_path_in_sandbox on initialization
* add typing for tmp dir fixture
* clear the directory before running the test to avoid weird CI temp dir
* remove agnostic test case for server runtime
* Revert "remove agnostic test case for server runtime"
This reverts commit 30e2181c3f.
* disable agnostic tests in CI
* fix test
---------
Co-authored-by: Graham Neubig <neubig@gmail.com>
* Remove global config from memory
* Remove runtime global config
* Remove from storage
* Remove global config
* Fix event stream tests
* Fix sandbox issue
* Change config
* Removed transferred tests
* Add swe env box
* Fixes on testing
* Fixed some tests
* Merge with stashed changes
* Fix typing
* Fix ipython test
* Revive function
* Make temp_dir fixture
* Remove test to avoid circular import
* fix eventstream filestore for test_runtime
* fix parse arg issue that cause integration test to fail
* support swebench pull from custom namespace
* add back simple tests for runtime
* move multi-line bash tests to test_runtime;
support multi-line bash for esruntime;
* add testcase to handle PS2 prompt
* use bashlex for bash parsing to handle multi-line commands;
add testcases for multi-line commands
* revert ghcr runtime change
---------
Co-authored-by: Graham Neubig <neubig@gmail.com>
* test_runtime_client.py to test _execute_bash()
* runtime_build and runtime tweaks
* fix in docker script
* revert bash changes
* use sandbox_config.update_source_code to control source code update
* add od_version to the sandbox tag
* add doc instruction for update source code
* do not remove whole poetry folder;
add mamba clean
* add missing newlines
* cleanup runtime dockerfile into jinja template
* make prep temp file a separate function;
make that function accessible through cli
* modify `runtime_build.py` so it can generate directory for building docker img
* add dockerfile and sdist of runtime to gitignore since it will be dynamically generated
* add runtime to build
* do not rebuild new image when an `od_runtime` is provided
* use default container_image for testing if possible
* move runtime tests to ghcr runtime workflow
* update docker base dir for runtime
* fix unittest
* fix image name
* fix image name for test case
* rename to make it consistent
---------
Co-authored-by: tobitege <tobitege@gmx.de>
* test_runtime_client.py to test _execute_bash()
* runtime_build and runtime tweaks
* fix in docker script
* revert bash changes
* use sandbox_config.update_source_code to control source code update
* add od_version to the sandbox tag
* add doc instruction for update source code
* do not remove whole poetry folder;
add mamba clean
* add missing newlines
---------
Co-authored-by: tobitege <tobitege@gmx.de>
* deprecating recall action
* fix integration tests
* fix integration tests
* refractor runtime to use async
* remove search memory
* rename .initialize to .ainit
* draft of runtime image building (separate from img agnostic)
* refractor runtime build into separate file and add unit tests for it
* fix image agnostic tests
* move `split_bash_commands` into a separate util file
* fix bash pexcept parsing for env
* refractor add_env_var from sandbox to runtime;
add test runtime for env var, remove it from sandbox;
* remove unclear comment
* capture broader error
* make `add_env_var` handle multiple export at the same time
* add multi env var test
* fix tests with new config
* make runtime tests a separate ci to avoid full disk
* Update Runtime README with architecture diagram and detailed explanations
* update test
* remove dependency of global config in sandbox test
* fix sandbox typo
* runtime tests does not need ghcr build now
* remove download runtime img
* remove dependency of global config in sandbox test
* fix sandbox typo
* try to free disk before running the tests
* Update opendevin/runtime/client/README.md
Co-authored-by: Yufan Song <33971064+yufansong@users.noreply.github.com>
* Update opendevin/runtime/client/README.md
Co-authored-by: Yufan Song <33971064+yufansong@users.noreply.github.com>
* Update opendevin/runtime/client/README.md
Co-authored-by: Yufan Song <33971064+yufansong@users.noreply.github.com>
* try to reduce code duplication
* Update opendevin/runtime/client/README.md
Co-authored-by: Yufan Song <33971064+yufansong@users.noreply.github.com>
* Update opendevin/runtime/client/README.md
Co-authored-by: Yufan Song <33971064+yufansong@users.noreply.github.com>
* Update opendevin/runtime/client/README.md
Co-authored-by: Yufan Song <33971064+yufansong@users.noreply.github.com>
* Update opendevin/runtime/client/README.md
Co-authored-by: Yufan Song <33971064+yufansong@users.noreply.github.com>
* Update opendevin/runtime/client/README.md
Co-authored-by: Yufan Song <33971064+yufansong@users.noreply.github.com>
* cleanup before setup
* temporarily remove this enable lint test since env var are now handled by runtime
* linter
---------
Co-authored-by: OpenDevin <opendevin@all-hands.dev>
Co-authored-by: Yufan Song <33971064+yufansong@users.noreply.github.com>
* Updated documentation using ruff's autofix feature
* Updated pyproject.toml to include docstring validations
* Updated documentation using ruff's autofix feature
* Updated pyproject.toml to include docstring validations
* Updated docstrings using ruff's autfix feature
* Deleted opendevin/runtime/utils/soource.py, Keeping in sync with main
---------
Co-authored-by: Graham Neubig <neubig@gmail.com>
* fix the case when source and tmp are not on the same device
* always build a dev box (with updated source code) for development purpose
* tail the log before removing the container
* move browse function
* support browser!
* support loading a particular runtime class via config.runtime (default to server to not break things)
* move image agnostic util to shared runtime util
* move dependency
* include poetry.lock in sdist
* accept port as arg for client
* make client start server with specified port
* update image agnostic utility for eventstream runtime
* make client and runtime working with REST API
* rename execute_server
* add plugin to initialize stuff inside es-runtime;
cleanup runtime methods to delegate everything to container
* remove redundant ls -alh
* fix jupyter
* improve logging in agnostic sandbox
* improve logging of test function
* add read & edit
* update agnostic sandbox
* support setting work dir at start
* fix file read/write test
* fix unit test
* update tescase
* Fix unit test again
* fix unit test again again
* mypy is invaluable
* fix config, add test
* Add new-style toml support
* add singleton, small doc fixes
* fix some cases of loading toml, clean up, try to make it clearer
* Add defaults_dict for UI
* allow config to be mutable
error handling
fix toml parsing
* remove debug stuff
* Adapt Makefile
* Add defaults for temperature and top_p
* update to CodeActAgent
* comments
* fix unit tests
* implement groups of llm settings (CLI)
* fix merge issue
* small fix sandboxes, small refactoring
* adapt LLM init to accept overrides at runtime
* reading config is enough
* Encapsulate minimally embeddings initialization
* agent bug fix; fix tests
* fix sandboxes tests
* refactor globals in sandboxes to properties
