diff --git a/apm/package.json b/apm/package.json
index b09eb087a..52f42c0af 100644
--- a/apm/package.json
+++ b/apm/package.json
@@ -6,6 +6,6 @@
     "url": "https://github.com/atom/atom.git"
   },
   "dependencies": {
-    "atom-package-manager": "0.164.0"
+    "atom-package-manager": "0.165.0"
   }
 }
diff --git a/package.json b/package.json
index 5fa296cb4..9d5e66e79 100644
--- a/package.json
+++ b/package.json
@@ -84,7 +84,7 @@
     "solarized-dark-syntax": "0.32.0",
     "solarized-light-syntax": "0.19.0",
     "archive-view": "0.56.0",
-    "autocomplete": "0.44.0",
+    "autocomplete": "0.46.0",
     "autoflow": "0.22.0",
     "autosave": "0.20.0",
     "background-tips": "0.24.0",
@@ -116,7 +116,7 @@
     "spell-check": "0.56.0",
     "status-bar": "0.69.0",
     "styleguide": "0.44.0",
-    "symbols-view": "0.95.0",
+    "symbols-view": "0.96.0",
     "tabs": "0.68.0",
     "timecop": "0.31.0",
     "tree-view": "0.171.0",
@@ -135,7 +135,7 @@
     "language-html": "0.36.0",
     "language-hyperlink": "0.13.0",
     "language-java": "0.15.0",
-    "language-javascript": "0.76.0",
+    "language-javascript": "0.77.0",
     "language-json": "0.14.0",
     "language-less": "0.27.0",
     "language-make": "0.14.0",
diff --git a/spec/integration/helpers/start-atom.coffee b/spec/integration/helpers/start-atom.coffee
index 0de6644b3..646281171 100644
--- a/spec/integration/helpers/start-atom.coffee
+++ b/spec/integration/helpers/start-atom.coffee
@@ -15,15 +15,23 @@ ChromedriverPort = 9515
 ChromedriverURLBase = "/wd/hub"
 ChromedriverStatusURL = "http://localhost:#{ChromedriverPort}#{ChromedriverURLBase}/status"
 
-pollChromeDriver = (done) ->
+chromeDriverUp = (done) ->
   checkStatus = ->
-    http.get(ChromedriverStatusURL, (response) ->
-      if response.statusCode is 200
-        done()
-      else
-        pollChromeDriver(done)
-    ).on("error", -> pollChromeDriver(done))
+    http
+      .get ChromedriverStatusURL, (response) ->
+        if response.statusCode is 200
+          done()
+        else
+          chromeDriverUp(done)
+      .on("error", -> chromeDriverUp(done))
+  setTimeout(checkStatus, 100)
 
+chromeDriverDown = (done) ->
+  checkStatus = ->
+    http
+      .get ChromedriverStatusURL, (response) ->
+        chromeDriverDown(done)
+      .on("error", done)
   setTimeout(checkStatus, 100)
 
 buildAtomClient = (args, env) ->
@@ -137,9 +145,9 @@ module.exports = (args, env, fn) ->
       chromedriver.stderr.on "close", ->
         resolve(errorCode)
 
-  waitsFor("webdriver to start", pollChromeDriver, 15000)
+  waitsFor("webdriver to start", chromeDriverUp, 15000)
 
-  waitsFor("webdriver to finish", (done) ->
+  waitsFor("tests to run", (done) ->
     finish = once ->
       client
         .simulateQuit()
@@ -162,3 +170,5 @@ module.exports = (args, env, fn) ->
 
     fn(client.init()).then(finish)
   , 30000)
+
+  waitsFor("webdriver to stop", chromeDriverDown, 15000)
diff --git a/spec/integration/startup-spec.coffee b/spec/integration/startup-spec.coffee
index b20427954..828193e4d 100644
--- a/spec/integration/startup-spec.coffee
+++ b/spec/integration/startup-spec.coffee
@@ -150,10 +150,12 @@ describe "Starting Atom", ->
           .waitForWindowCount(2, 10000)
           .then ({value: windowHandles}) ->
             @window(windowHandles[0])
+            .waitForExist("atom-workspace")
             .treeViewRootDirectories()
             .then ({value: directories}) -> windowProjectPaths.push(directories)
 
             .window(windowHandles[1])
+            .waitForExist("atom-workspace")
             .treeViewRootDirectories()
             .then ({value: directories}) -> windowProjectPaths.push(directories)
 
diff --git a/src/browser/atom-application.coffee b/src/browser/atom-application.coffee
index 178755786..6f7f0ac4b 100644
--- a/src/browser/atom-application.coffee
+++ b/src/browser/atom-application.coffee
@@ -87,7 +87,7 @@ class AtomApplication
 
   openWithOptions: ({pathsToOpen, urlsToOpen, test, pidToKillWhenClosed, devMode, safeMode, apiPreviewMode, newWindow, specDirectory, logFile, profileStartup}) ->
     if test
-      @runSpecs({exitWhenDone: true, @resourcePath, specDirectory, logFile})
+      @runSpecs({exitWhenDone: true, @resourcePath, specDirectory, logFile, apiPreviewMode})
     else if pathsToOpen.length > 0
       @openPaths({pathsToOpen, pidToKillWhenClosed, newWindow, devMode, safeMode, apiPreviewMode, profileStartup})
     else if urlsToOpen.length > 0
@@ -486,7 +486,7 @@ class AtomApplication
   #   :specPath - The directory to load specs from.
   #   :safeMode - A Boolean that, if true, won't run specs from ~/.atom/packages
   #               and ~/.atom/dev/packages, defaults to false.
-  runSpecs: ({exitWhenDone, resourcePath, specDirectory, logFile, safeMode}) ->
+  runSpecs: ({exitWhenDone, resourcePath, specDirectory, logFile, safeMode, apiPreviewMode}) ->
     if resourcePath isnt @resourcePath and not fs.existsSync(resourcePath)
       resourcePath = @resourcePath
 
@@ -498,7 +498,8 @@ class AtomApplication
     isSpec = true
     devMode = true
     safeMode ?= false
-    new AtomWindow({bootstrapScript, resourcePath, exitWhenDone, isSpec, devMode, specDirectory, logFile, safeMode})
+    apiPreviewMode ?= false
+    new AtomWindow({bootstrapScript, resourcePath, exitWhenDone, isSpec, devMode, specDirectory, logFile, safeMode, apiPreviewMode})
 
   runBenchmarks: ({exitWhenDone, specDirectory}={}) ->
     try
@@ -518,11 +519,11 @@ class AtomApplication
 
     [fileToOpen, initialLine, initialColumn] = path.basename(pathToOpen).split(':')
     return {pathToOpen} unless initialLine
-    return {pathToOpen} unless parseInt(initialLine) > 0
+    return {pathToOpen} unless parseInt(initialLine) >= 0
 
     # Convert line numbers to a base of 0
-    initialLine -= 1 if initialLine
-    initialColumn -= 1 if initialColumn
+    initialLine = Math.max(0, initialLine - 1) if initialLine
+    initialColumn = Math.max(0, initialColumn - 1) if initialColumn
     pathToOpen = path.join(path.dirname(pathToOpen), fileToOpen)
     {pathToOpen, initialLine, initialColumn}