Rename App.coffee to Atom.coffee. This also required moving src/atom,spec/atom to src/app,spec/app

src/app/command-interpreter/address-range.coffee

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+Address = require 'command-interpreter/address'
+Range = require 'range'
+
+module.exports =
+class AddressRange extends Address
+  constructor: (@startAddress, @endAddress) ->
+
+  getRange: (editor) ->
+    new Range(@startAddress.getRange(editor).start, @endAddress.getRange(editor).end)
+
+  isRelative: ->
+    @startAddress.isRelative() or @endAddress.isRelative()

src/app/command-interpreter/address.coffee

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+Command = require 'command-interpreter/command'
+
+module.exports =
+class Address extends Command
+  execute: (editor) ->
+    range = @getRange(editor)
+    editor.clearSelections()
+    editor.setSelectionBufferRange(range)
+
+  isAddress: -> true

src/app/command-interpreter/command.coffee

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+_ = require 'underscore'
+
+module.exports =
+class Command
+  isAddress: -> false

src/app/command-interpreter/composite-command.coffee

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+_ = require 'underscore'
+
+module.exports =
+class CompositeCommand
+  constructor: (@subcommands) ->
+
+  execute: (editor) ->
+    command.execute(editor) for command in @subcommands
+
+  isRelativeAddress: ->
+    _.all(@subcommands, (command) -> command.isAddress() and command.isRelative())
+

src/app/command-interpreter/current-selection-address.coffee

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+Address = require 'command-interpreter/address'
+Range = require 'range'
+
+module.exports =
+class CurrentSelectionAddress extends Address
+  getRange: (editor) ->
+    editor.getSelection().getBufferRange()
+
+  isRelative: -> true

src/app/command-interpreter/eof-address.coffee

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+Address = require 'command-interpreter/address'
+Range = require 'range'
+
+module.exports =
+class EofAddress extends Address
+  getRange: (editor) ->
+    lastRow = editor.getLastBufferRow()
+    column = editor.lineLengthForBufferRow(lastRow)
+    new Range([lastRow, column], [lastRow, column])
+
+  isRelative: -> false

src/app/command-interpreter/line-address.coffee

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+Address = require 'command-interpreter/address'
+Range = require 'range'
+
+module.exports =
+class LineAddress extends Address
+  constructor: (lineNumber) ->
+    @row = lineNumber - 1
+
+  getRange: ->
+    new Range([@row, 0], [@row + 1, 0])
+
+  isRelative: -> false

src/app/command-interpreter/regex-address.coffee

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+Address = require 'command-interpreter/address'
+Range = require 'range'
+
+module.exports =
+class RegexAddress extends Address
+  regex: null
+
+  constructor: (pattern) ->
+    @regex = new RegExp(pattern)
+
+  getRange: (editor) ->
+    selectedRange = editor.getLastSelectionInBuffer().getBufferRange()
+    rangeToSearch = new Range(selectedRange.end, editor.getEofPosition())
+
+    rangeToReturn = null
+    editor.buffer.traverseRegexMatchesInRange @regex, rangeToSearch, (match, range) ->
+      rangeToReturn = range
+
+    if rangeToReturn
+      rangeToReturn
+    else
+      rangeToSearch = new Range([0, 0], rangeToSearch.start)
+      editor.buffer.traverseRegexMatchesInRange @regex, rangeToSearch, (match, range) ->
+        rangeToReturn = range
+
+      rangeToReturn or selectedRange
+
+  isRelative: -> true

src/app/command-interpreter/select-all-matches.coffee

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+Command = require 'command-interpreter/command'
+Range = require 'range'
+
+module.exports =
+class SelectAllMatches extends Command
+  regex: null
+
+  constructor: (pattern) ->
+    @regex = new RegExp(pattern, 'g')
+
+  execute: (editor) ->
+    rangesToSelect = []
+    for selection in editor.getSelections()
+      editor.buffer.traverseRegexMatchesInRange @regex, selection.getBufferRange(), (match, range) ->
+        rangesToSelect.push(range)
+
+    editor.clearSelections()
+    editor.setSelectionBufferRange(rangesToSelect[0])
+    editor.addSelectionForBufferRange(range) for range in rangesToSelect[1..]

src/app/command-interpreter/substitution.coffee

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+Command = require 'command-interpreter/command'
+
+module.exports =
+class Substitution extends Command
+  regex: null
+  replacementText: null
+
+  constructor: (pattern, replacementText, options) ->
+    @replacementText = replacementText
+    @regex = new RegExp(pattern, options.join(''))
+
+  execute: (editor) ->
+    range = editor.getSelection().getBufferRange()
+    editor.buffer.traverseRegexMatchesInRange @regex, range, (match, matchRange, { replace }) =>
+      replace(@replacementText)
+