diff --git a/spec/spec-helper.coffee b/spec/spec-helper.coffee
index 4bad73ee7..d5107fc53 100644
--- a/spec/spec-helper.coffee
+++ b/spec/spec-helper.coffee
@@ -119,6 +119,8 @@ beforeEach ->
   addCustomMatchers(this)
 
 afterEach ->
+  atom.commands.clear()
+
   atom.packages.deactivatePackages()
   atom.menu.template = []