Remove remaining package paths from Config class

src/atom.coffee

@@ -62,7 +62,7 @@ class Atom
     @packages = new PackageManager({devMode, configDirPath, resourcePath})
 
     @subscribe @packages, 'activated', => @watchThemes()
-    @themes = new ThemeManager({packageManager: @packages, resourcePath})
+    @themes = new ThemeManager({packageManager: @packages, configDirPath, resourcePath})
     @contextMenu = new ContextMenuManager(devMode)
     @menu = new MenuManager({resourcePath})
     @pasteboard = new Pasteboard()

src/config.coffee

@@ -33,13 +33,6 @@ class Config
 
   # Private: Created during initialization, available as `global.config`
   constructor: ({@configDirPath, @resourcePath}={}) ->
-    @nodeModulesDirPath = path.join(@resourcePath, "node_modules")
-    @bundledPackageDirPaths = [@nodeModulesDirPath]
-    @packageDirPaths = [path.join(@configDirPath, "packages")]
-    if atom.getLoadSettings().devMode
-      @packageDirPaths.unshift(path.join(@configDirPath, "dev", "packages"))
-    @userPackageDirPaths = _.clone(@packageDirPaths)
-
     @defaultSettings = {}
     @settings = {}
     @configFilePath = fs.resolve(@configDirPath, 'config', ['json', 'cson'])

src/theme-manager.coffee

@@ -17,7 +17,7 @@ module.exports =
 class ThemeManager
   Emitter.includeInto(this)
 
-  constructor: ({@packageManager, @resourcePath}) ->
+  constructor: ({@packageManager, @resourcePath, @configDirPath}) ->
     @lessCache = null
     @packageManager.registerPackageActivator(this, ['theme'])
 
@@ -87,7 +87,7 @@ class ThemeManager
 
   # Public:
   getUserStylesheetPath: ->
-    stylesheetPath = fs.resolve(path.join(atom.config.configDirPath, 'user'), ['css', 'less'])
+    stylesheetPath = fs.resolve(path.join(@configDirPath, 'user'), ['css', 'less'])
     if fs.isFileSync(stylesheetPath)
       stylesheetPath
     else