Put back code that was commented out

src/atom-environment.coffee

@@ -131,7 +131,7 @@ class AtomEnvironment extends Model
 
   # Call .loadOrCreate instead
   constructor: (params={}) ->
-    {@applicationDelegate, @window, @document, @clipboard, @configDirPath, @enablePersistence, onlyLoadBaseStyleSheets} = params
+    {@blobStore, @applicationDelegate, @window, @document, @clipboard, @configDirPath, @enablePersistence, onlyLoadBaseStyleSheets} = params
 
     @unloaded = false
     @loadTime = null
@@ -733,6 +733,7 @@ class AtomEnvironment extends Model
 
     @storeWindowBackground()
     @packages.deactivatePackages()
+    @saveBlobStoreSync()
     @unloaded = true
 
   openInitialEmptyEditorIfNecessary: ->
@@ -866,6 +867,11 @@ class AtomEnvironment extends Model
   showSaveDialogSync: (options={}) ->
     @applicationDelegate.showSaveDialog(options)
 
+  saveBlobStoreSync: ->
+    return unless @enablePersistence
+
+    @blobStore.save()
+
   saveState: (options) ->
     new Promise (resolve, reject) =>
       if @enablePersistence and @project

src/coffee-script.js

@@ -35,7 +35,8 @@ exports.compile = function (sourceCode, filePath) {
 
   var output = CoffeeScript.compile(sourceCode, {
     filename: filePath,
-    sourceFiles: [filePath]
+    sourceFiles: [filePath],
+    inlineMap: true
   })
 
   // Strip sourceURL from output so there wouldn't be duplicate entries

src/initialize-application-window.coffee

@@ -51,7 +51,7 @@ require('whitespace')
 require('wrap-guide')
 
 # Like sands through the hourglass, so are the days of our lives.
-module.exports = ->
+module.exports = ({blobStore}) ->
   {updateProcessEnv} = require('./update-process-env')
   path = require 'path'
   require './window'
@@ -72,7 +72,7 @@ module.exports = ->
   TextEditor.setClipboard(clipboard)
 
   window.atom = new AtomEnvironment({
-    window, document, clipboard,
+    window, document, clipboard, blobStore,
     applicationDelegate: new ApplicationDelegate,
     configDirPath: process.env.ATOM_HOME,
     enablePersistence: true,

src/package.coffee

@@ -7,6 +7,7 @@ fs = require 'fs-plus'
 {Emitter, CompositeDisposable} = require 'event-kit'
 
 CompileCache = require './compile-cache'
+ModuleCache = require './module-cache'
 ScopedProperties = require './scoped-properties'
 BufferedProcess = require './buffered-process'