diff --git a/docs/linux.dependency.licenses.txt b/docs/linux.dependency.licenses.txt index 81b6182be..6373cb9b8 100644 --- a/docs/linux.dependency.licenses.txt +++ b/docs/linux.dependency.licenses.txt @@ -1,19 +1,19 @@ - Name Version License - Pillow 9.1.1 Historical Permission Notice and Disclaimer (HPND) - PyYAML 6.0 MIT License - concrete-compiler 0.10.0 BSD-3 - cycler 0.11.0 BSD License - fonttools 4.33.3 MIT License - kiwisolver 1.4.2 BSD License - matplotlib 3.5.2 Python Software Foundation License - networkx 2.8.2 BSD License - numpy 1.22.4 BSD License - packaging 21.3 Apache Software License; BSD License - pygraphviz 1.9 BSD License - pyparsing 3.0.9 MIT License - python-dateutil 2.8.2 Apache Software License; BSD License - setuptools-scm 6.4.2 MIT License - six 1.16.0 MIT License - tomli 2.0.1 MIT License - torch 1.11.0 BSD License - typing-extensions 4.2.0 Python Software Foundation License + Name Version License + Pillow 9.2.0 Historical Permission Notice and Disclaimer (HPND) + PyYAML 6.0 MIT License + concrete-compiler 0.10.0 BSD-3 + cycler 0.11.0 BSD License + fonttools 4.34.4 MIT License + kiwisolver 1.4.4 BSD License + matplotlib 3.5.2 Python Software Foundation License + networkx 2.8.5 BSD License + numpy 1.23.1 BSD License + packaging 21.3 Apache Software License; BSD License + pygraphviz 1.9 BSD License + pyparsing 3.0.9 MIT License + python-dateutil 2.8.2 Apache Software License; BSD License + setuptools-scm 7.0.5 MIT License + six 1.16.0 MIT License + tomli 2.0.1 MIT License + torch 1.12.0 BSD License + typing-extensions 4.3.0 Python Software Foundation License diff --git a/poetry.lock b/poetry.lock index 9514acbd2..b8b6ccf56 100644 --- a/poetry.lock +++ b/poetry.lock @@ -66,7 +66,7 @@ test = ["astroid", "pytest"] [[package]] name = "atomicwrites" -version = "1.4.0" +version = "1.4.1" description = "Atomic file writes." category = "dev" optional = false @@ -111,7 +111,7 @@ lxml = ["lxml"] [[package]] name = "black" -version = "22.3.0" +version = "22.6.0" description = "The uncompromising code formatter." category = "dev" optional = false @@ -122,7 +122,7 @@ click = ">=8.0.0" mypy-extensions = ">=0.4.3" pathspec = ">=0.9.0" platformdirs = ">=2" -tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} +tomli = {version = ">=1.1.0", markers = "python_full_version < \"3.11.0a7\""} typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""} [package.extras] @@ -133,7 +133,7 @@ uvloop = ["uvloop (>=0.15.2)"] [[package]] name = "bleach" -version = "5.0.0" +version = "5.0.1" description = "An easy safelist-based HTML-sanitizing tool." category = "dev" optional = false @@ -144,8 +144,8 @@ six = ">=1.9.0" webencodings = "*" [package.extras] -css = ["tinycss2 (>=1.1.0)"] -dev = ["pip-tools (==6.5.1)", "pytest (==7.1.1)", "flake8 (==4.0.1)", "tox (==3.24.5)", "sphinx (==4.3.2)", "twine (==4.0.0)", "wheel (==0.37.1)", "hashin (==0.17.0)", "black (==22.3.0)", "mypy (==0.942)"] +css = ["tinycss2 (>=1.1.0,<1.2)"] +dev = ["build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "Sphinx (==4.3.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)", "black (==22.3.0)", "mypy (==0.961)"] [[package]] name = "cachecontrol" @@ -166,7 +166,7 @@ redis = ["redis (>=2.10.5)"] [[package]] name = "certifi" -version = "2022.5.18.1" +version = "2022.6.15" description = "Python package for providing Mozilla's CA Bundle." category = "dev" optional = false @@ -174,7 +174,7 @@ python-versions = ">=3.6" [[package]] name = "cffi" -version = "1.15.0" +version = "1.15.1" description = "Foreign Function Interface for Python calling C code." category = "dev" optional = false @@ -185,11 +185,11 @@ pycparser = "*" [[package]] name = "charset-normalizer" -version = "2.0.12" +version = "2.1.0" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "dev" optional = false -python-versions = ">=3.5.0" +python-versions = ">=3.6.0" [package.extras] unicode_backport = ["unicodedata2"] @@ -218,7 +218,7 @@ click = "*" [[package]] name = "colorama" -version = "0.4.4" +version = "0.4.5" description = "Cross-platform colored terminal text." category = "dev" optional = false @@ -238,21 +238,21 @@ PyYAML = "*" [[package]] name = "coverage" -version = "6.4" +version = "6.4.2" description = "Code coverage measurement for Python" category = "dev" optional = false python-versions = ">=3.7" [package.dependencies] -tomli = {version = "*", optional = true, markers = "python_version < \"3.11\" and extra == \"toml\""} +tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""} [package.extras] toml = ["tomli"] [[package]] name = "cryptography" -version = "37.0.2" +version = "37.0.4" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." category = "dev" optional = false @@ -293,7 +293,7 @@ types-toml = ">=0.10.0,<0.11.0" [[package]] name = "debugpy" -version = "1.6.0" +version = "1.6.2" description = "An implementation of the Debug Adapter Protocol for Python" category = "dev" optional = false @@ -317,22 +317,19 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "docutils" -version = "0.18.1" +version = "0.19" description = "Docutils -- Python Documentation Utilities" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.7" [[package]] name = "dotty-dict" -version = "1.3.0" +version = "1.3.1" description = "Dictionary wrapper for quick access to deeply nested keys." category = "dev" optional = false -python-versions = "*" - -[package.dependencies] -setuptools_scm = "*" +python-versions = ">=3.5,<4.0" [[package]] name = "entrypoints" @@ -363,7 +360,7 @@ python-versions = "*" [[package]] name = "fastjsonschema" -version = "2.15.3" +version = "2.16.1" description = "Fastest Python implementation of JSON schema" category = "dev" optional = false @@ -402,7 +399,7 @@ dev = ["coverage", "hypothesis", "hypothesmith (>=0.2)", "pre-commit"] [[package]] name = "fonttools" -version = "4.33.3" +version = "4.34.4" description = "Tools to manipulate font files" category = "main" optional = false @@ -472,7 +469,7 @@ python-versions = ">=3.5" [[package]] name = "importlib-metadata" -version = "4.11.4" +version = "4.12.0" description = "Read metadata from Python packages" category = "dev" optional = false @@ -484,11 +481,11 @@ zipp = ">=0.5" [package.extras] docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] perf = ["ipython"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] [[package]] name = "importlib-resources" -version = "5.7.1" +version = "5.8.0" description = "Read resources from Python packages" category = "dev" optional = false @@ -519,7 +516,7 @@ python-versions = "*" [[package]] name = "ipykernel" -version = "6.13.0" +version = "6.15.1" description = "IPython Kernel for Jupyter" category = "dev" optional = false @@ -534,11 +531,12 @@ matplotlib-inline = ">=0.1" nest-asyncio = "*" packaging = "*" psutil = "*" +pyzmq = ">=17" tornado = ">=6.1" traitlets = ">=5.1.0" [package.extras] -test = ["pytest (>=6.0)", "pytest-cov", "flaky", "ipyparallel", "pre-commit", "pytest-timeout"] +test = ["flaky", "ipyparallel", "pre-commit", "pytest-cov", "pytest-timeout", "pytest (>=6.0)"] [[package]] name = "ipython" @@ -585,7 +583,7 @@ python-versions = "*" [[package]] name = "ipywidgets" -version = "7.7.0" +version = "7.7.1" description = "IPython HTML widgets for Jupyter" category = "dev" optional = false @@ -596,7 +594,6 @@ ipykernel = ">=4.5.1" ipython = {version = ">=4.0.0", markers = "python_version >= \"3.3\""} ipython-genutils = ">=0.2.0,<0.3.0" jupyterlab-widgets = {version = ">=1.0.0", markers = "python_version >= \"3.6\""} -nbformat = ">=4.2.0" traitlets = ">=4.3.1" widgetsnbextension = ">=3.6.0,<3.7.0" @@ -660,7 +657,7 @@ i18n = ["Babel (>=2.7)"] [[package]] name = "jsonschema" -version = "4.5.1" +version = "4.7.2" description = "An implementation of JSON Schema validation for Python" category = "dev" optional = false @@ -673,7 +670,7 @@ pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" [package.extras] format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] -format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"] +format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"] [[package]] name = "jupyter" @@ -693,7 +690,7 @@ qtconsole = "*" [[package]] name = "jupyter-client" -version = "7.3.1" +version = "7.3.4" description = "Jupyter protocol implementation and client libraries" category = "dev" optional = false @@ -704,21 +701,21 @@ entrypoints = "*" jupyter-core = ">=4.9.2" nest-asyncio = ">=1.5.4" python-dateutil = ">=2.8.2" -pyzmq = ">=22.3" +pyzmq = ">=23.0" tornado = ">=6.0" traitlets = "*" [package.extras] -doc = ["ipykernel", "myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] +doc = ["ipykernel", "myst-parser", "sphinx-rtd-theme", "sphinx (>=1.3.6)", "sphinxcontrib-github-alt"] test = ["codecov", "coverage", "ipykernel (>=6.5)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"] [[package]] name = "jupyter-console" -version = "6.4.3" +version = "6.4.4" description = "Jupyter terminal console" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] ipykernel = "*" @@ -732,7 +729,7 @@ test = ["pexpect"] [[package]] name = "jupyter-core" -version = "4.10.0" +version = "4.11.1" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "dev" optional = false @@ -755,7 +752,7 @@ python-versions = ">=3.7" [[package]] name = "jupyterlab-widgets" -version = "1.1.0" +version = "1.1.1" description = "A JupyterLab extension." category = "dev" optional = false @@ -763,25 +760,25 @@ python-versions = ">=3.6" [[package]] name = "keyring" -version = "23.5.1" +version = "23.7.0" description = "Store and access your passwords safely." category = "dev" optional = false python-versions = ">=3.7" [package.dependencies] -importlib-metadata = ">=3.6" +importlib-metadata = {version = ">=3.6", markers = "python_version < \"3.10\""} jeepney = {version = ">=0.4.2", markers = "sys_platform == \"linux\""} pywin32-ctypes = {version = "<0.1.0 || >0.1.0,<0.1.1 || >0.1.1", markers = "sys_platform == \"win32\""} SecretStorage = {version = ">=3.2", markers = "sys_platform == \"linux\""} [package.extras] docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] [[package]] name = "kiwisolver" -version = "1.4.2" +version = "1.4.4" description = "A fast implementation of the Cassowary constraint solver" category = "main" optional = false @@ -859,8 +856,8 @@ python-versions = "*" [[package]] name = "msgpack" -version = "1.0.3" -description = "MessagePack (de)serializer." +version = "1.0.4" +description = "MessagePack serializer" category = "dev" optional = false python-versions = "*" @@ -892,7 +889,7 @@ python-versions = "*" [[package]] name = "nbclient" -version = "0.5.13" +version = "0.6.6" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "dev" optional = false @@ -902,11 +899,11 @@ python-versions = ">=3.7.0" jupyter-client = ">=6.1.5" nbformat = ">=5.0" nest-asyncio = "*" -traitlets = ">=5.0.0" +traitlets = ">=5.2.2" [package.extras] -sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] -test = ["ipython (<8.0.0)", "ipykernel", "ipywidgets (<8.0.0)", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "xmltodict", "black", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)"] +sphinx = ["autodoc-traits", "mock", "moto", "myst-parser", "Sphinx (>=1.7)", "sphinx-book-theme"] +test = ["black", "check-manifest", "flake8", "ipykernel", "ipython (<8.0.0)", "ipywidgets (<8.0.0)", "mypy", "pip (>=18.1)", "pre-commit", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "setuptools (>=60.0)", "testpath", "twine (>=1.11.0)", "xmltodict"] [[package]] name = "nbconvert" @@ -960,7 +957,7 @@ test = ["check-manifest", "testpath", "pytest", "pre-commit"] [[package]] name = "nbmake" -version = "1.3.0" +version = "1.3.3" description = "Pytest plugin for testing notebooks" category = "dev" optional = false @@ -968,7 +965,7 @@ python-versions = ">=3.7.0,<4.0.0" [package.dependencies] ipykernel = ">=5.4.0" -nbclient = ">=0.5.13,<0.6.0" +nbclient = ">=0.6.6,<0.7.0" nbformat = ">=5.0.8,<6.0.0" pydantic = ">=1.7.2,<2.0.0" Pygments = ">=2.7.3,<3.0.0" @@ -984,7 +981,7 @@ python-versions = ">=3.5" [[package]] name = "networkx" -version = "2.8.2" +version = "2.8.5" description = "Python package for creating and manipulating graphs and networks" category = "main" optional = false @@ -992,14 +989,14 @@ python-versions = ">=3.8" [package.extras] default = ["numpy (>=1.19)", "scipy (>=1.8)", "matplotlib (>=3.4)", "pandas (>=1.3)"] -developer = ["pre-commit (>=2.18)", "mypy (>=0.942)"] -doc = ["sphinx (>=4.5)", "pydata-sphinx-theme (>=0.8.1)", "sphinx-gallery (>=0.10)", "numpydoc (>=1.3)", "pillow (>=9.1)", "nb2plots (>=0.6)", "texext (>=0.6.6)"] +developer = ["pre-commit (>=2.19)", "mypy (>=0.960)"] +doc = ["sphinx (>=5)", "pydata-sphinx-theme (>=0.9)", "sphinx-gallery (>=0.10)", "numpydoc (>=1.4)", "pillow (>=9.1)", "nb2plots (>=0.6)", "texext (>=0.6.6)"] extra = ["lxml (>=4.6)", "pygraphviz (>=1.9)", "pydot (>=1.4.2)", "sympy (>=1.10)"] test = ["pytest (>=7.1)", "pytest-cov (>=3.0)", "codecov (>=2.1)"] [[package]] name = "notebook" -version = "6.4.11" +version = "6.4.12" description = "A web-based notebook environment for interactive computing" category = "dev" optional = false @@ -1029,7 +1026,7 @@ test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium", "pyte [[package]] name = "numpy" -version = "1.22.4" +version = "1.23.1" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false @@ -1037,14 +1034,15 @@ python-versions = ">=3.8" [[package]] name = "packageurl-python" -version = "0.9.9" +version = "0.10.0" description = "A purl aka. Package URL parser and builder" category = "dev" optional = false python-versions = ">=3.6" [package.extras] -test = ["isort", "pytest"] +build = ["wheel"] +test = ["pytest", "isort", "black"] [[package]] name = "packaging" @@ -1106,19 +1104,19 @@ python-versions = "*" [[package]] name = "pillow" -version = "9.1.1" +version = "9.2.0" description = "Python Imaging Library (Fork)" category = "main" optional = false python-versions = ">=3.7" [package.extras] -docs = ["olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinx-rtd-theme (>=1.0)", "sphinxext-opengraph"] +docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"] tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"] [[package]] name = "pip-api" -version = "0.0.29" +version = "0.0.30" description = "An unofficial, importable pip API" category = "dev" optional = false @@ -1160,14 +1158,14 @@ test = ["docutils", "pytest-cov", "pytest-pycodestyle", "pytest-runner"] [[package]] name = "pkginfo" -version = "1.8.2" +version = "1.8.3" description = "Query metadatdata from sdists / bdists / installed packages." category = "dev" optional = false -python-versions = "*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" [package.extras] -testing = ["coverage", "nose"] +testing = ["nose", "coverage"] [[package]] name = "platformdirs" @@ -1214,7 +1212,7 @@ twisted = ["twisted"] [[package]] name = "prompt-toolkit" -version = "3.0.29" +version = "3.0.30" description = "Library for building powerful interactive command lines in Python" category = "dev" optional = false @@ -1564,7 +1562,7 @@ python-versions = "*" [[package]] name = "pywinpty" -version = "2.0.5" +version = "2.0.6" description = "Pseudo terminal support for Windows from Python." category = "dev" optional = false @@ -1580,7 +1578,7 @@ python-versions = ">=3.6" [[package]] name = "pyzmq" -version = "23.0.0" +version = "23.2.0" description = "Python bindings for 0MQ" category = "dev" optional = false @@ -1592,7 +1590,7 @@ py = {version = "*", markers = "implementation_name == \"pypy\""} [[package]] name = "qtconsole" -version = "5.3.0" +version = "5.3.1" description = "Jupyter Qt console" category = "dev" optional = false @@ -1606,7 +1604,7 @@ jupyter-core = "*" pygments = "*" pyzmq = ">=17.1" qtpy = ">=2.0.1" -traitlets = "*" +traitlets = "<5.2.1 || >5.2.1,<5.2.2 || >5.2.2" [package.extras] doc = ["Sphinx (>=1.3)"] @@ -1644,21 +1642,21 @@ md = ["cmarkgfm (>=0.8.0)"] [[package]] name = "requests" -version = "2.27.1" +version = "2.28.1" description = "Python HTTP for Humans." category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +python-versions = ">=3.7, <4" [package.dependencies] certifi = ">=2017.4.17" -charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""} -idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""} +charset-normalizer = ">=2,<3" +idna = ">=2.5,<4" urllib3 = ">=1.21.1,<1.27" [package.extras] -socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] -use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] +socks = ["PySocks (>=1.5.6,!=1.5.7)"] +use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"] [[package]] name = "requests-toolbelt" @@ -1731,15 +1729,16 @@ win32 = ["pywin32"] [[package]] name = "setuptools-scm" -version = "6.4.2" +version = "7.0.5" description = "the blessed package to manage your versions by scm tags" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] packaging = ">=20.0" tomli = ">=1.0.0" +typing-extensions = "*" [package.extras] test = ["pytest (>=6.2)", "virtualenv (>20)"] @@ -1779,7 +1778,7 @@ python-versions = ">=3.6" [[package]] name = "stack-data" -version = "0.2.0" +version = "0.3.0" description = "Extract data from python stack frames and tracebacks for informative displays" category = "dev" optional = false @@ -1850,7 +1849,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "torch" -version = "1.11.0" +version = "1.12.0" description = "Tensors and Dynamic neural networks in Python with strong GPU acceleration" category = "main" optional = false @@ -1861,11 +1860,11 @@ typing-extensions = "*" [[package]] name = "tornado" -version = "6.1" +version = "6.2" description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed." category = "dev" optional = false -python-versions = ">= 3.5" +python-versions = ">= 3.7" [[package]] name = "tqdm" @@ -1886,7 +1885,7 @@ telegram = ["requests"] [[package]] name = "traitlets" -version = "5.2.1.post0" +version = "5.3.0" description = "" category = "dev" optional = false @@ -1917,7 +1916,7 @@ urllib3 = ">=1.26.0" [[package]] name = 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