mirror of
https://github.com/googleapis/genai-toolbox.git
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Add parameter `embeddedBy` field to support vector embedding & semantic search. Major change in `internal/util/parameters/parameters.go` This PR only adds vector formatter for the postgressql tool. Other tools requiring vector formatting may not work with embeddedBy. Second part of the Semantic Search support. First part: https://github.com/googleapis/genai-toolbox/pull/2121
304 lines
11 KiB
Go
304 lines
11 KiB
Go
// Copyright 2025 Google LLC
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//
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// Licensed under the Apache License, Version 2.0 (the "License");
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// you may not use this file except in compliance with the License.
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// You may obtain a copy of the License at
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//
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// http://www.apache.org/licenses/LICENSE-2.0
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//
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// Unless required by applicable law or agreed to in writing, software
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// distributed under the License is distributed on an "AS IS" BASIS,
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// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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// See the License for the specific language governing permissions and
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// limitations under the License.
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package fhirpatientsearch
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import (
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"context"
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"encoding/json"
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"fmt"
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"io"
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"strings"
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"github.com/goccy/go-yaml"
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"github.com/googleapis/genai-toolbox/internal/embeddingmodels"
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"github.com/googleapis/genai-toolbox/internal/sources"
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healthcareds "github.com/googleapis/genai-toolbox/internal/sources/cloudhealthcare"
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"github.com/googleapis/genai-toolbox/internal/tools"
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"github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/common"
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"github.com/googleapis/genai-toolbox/internal/util/parameters"
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"google.golang.org/api/googleapi"
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"google.golang.org/api/healthcare/v1"
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)
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const kind string = "cloud-healthcare-fhir-patient-search"
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const (
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activeKey = "active"
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cityKey = "city"
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countryKey = "country"
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postalCodeKey = "postalcode"
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stateKey = "state"
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addressSubstringKey = "addressSubstring"
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birthDateRangeKey = "birthDateRange"
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deathDateRangeKey = "deathDateRange"
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deceasedKey = "deceased"
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emailKey = "email"
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genderKey = "gender"
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addressUseKey = "addressUse"
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nameKey = "name"
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givenNameKey = "givenName"
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familyNameKey = "familyName"
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phoneKey = "phone"
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languageKey = "language"
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identifierKey = "identifier"
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summaryKey = "summary"
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)
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func init() {
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if !tools.Register(kind, newConfig) {
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panic(fmt.Sprintf("tool kind %q already registered", kind))
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}
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}
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func newConfig(ctx context.Context, name string, decoder *yaml.Decoder) (tools.ToolConfig, error) {
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actual := Config{Name: name}
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if err := decoder.DecodeContext(ctx, &actual); err != nil {
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return nil, err
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}
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return actual, nil
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}
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type compatibleSource interface {
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Project() string
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Region() string
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DatasetID() string
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AllowedFHIRStores() map[string]struct{}
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Service() *healthcare.Service
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ServiceCreator() healthcareds.HealthcareServiceCreator
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UseClientAuthorization() bool
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}
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type Config struct {
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Name string `yaml:"name" validate:"required"`
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Kind string `yaml:"kind" validate:"required"`
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Source string `yaml:"source" validate:"required"`
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Description string `yaml:"description" validate:"required"`
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AuthRequired []string `yaml:"authRequired"`
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}
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// validate interface
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var _ tools.ToolConfig = Config{}
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func (cfg Config) ToolConfigKind() string {
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return kind
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}
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func (cfg Config) Initialize(srcs map[string]sources.Source) (tools.Tool, error) {
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// verify source exists
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rawS, ok := srcs[cfg.Source]
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if !ok {
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return nil, fmt.Errorf("no source named %q configured", cfg.Source)
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}
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// verify the source is compatible
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s, ok := rawS.(compatibleSource)
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if !ok {
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return nil, fmt.Errorf("invalid source for %q tool: source %q not compatible", kind, cfg.Source)
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}
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params := parameters.Parameters{
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parameters.NewStringParameterWithDefault(activeKey, "", "Whether the patient record is active. Use true or false"),
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parameters.NewStringParameterWithDefault(cityKey, "", "The city of the patient's address"),
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parameters.NewStringParameterWithDefault(countryKey, "", "The country of the patient's address"),
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parameters.NewStringParameterWithDefault(postalCodeKey, "", "The postal code of the patient's address"),
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parameters.NewStringParameterWithDefault(stateKey, "", "The state of the patient's address"),
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parameters.NewStringParameterWithDefault(addressSubstringKey, "", "A substring to search for in any address field"),
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parameters.NewStringParameterWithDefault(birthDateRangeKey, "", "A date range for the patient's birthdate in the format YYYY-MM-DD/YYYY-MM-DD. Omit the first or second date to indicate open-ended ranges (e.g. '/2000-01-01' or '1950-01-01/')"),
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parameters.NewStringParameterWithDefault(deathDateRangeKey, "", "A date range for the patient's death date in the format YYYY-MM-DD/YYYY-MM-DD. Omit the first or second date to indicate open-ended ranges (e.g. '/2000-01-01' or '1950-01-01/')"),
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parameters.NewStringParameterWithDefault(deceasedKey, "", "Whether the patient is deceased. Use true or false"),
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parameters.NewStringParameterWithDefault(emailKey, "", "The patient's email address"),
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parameters.NewStringParameterWithDefault(genderKey, "", "The patient's gender. Must be one of 'male', 'female', 'other', or 'unknown'"),
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parameters.NewStringParameterWithDefault(addressUseKey, "", "The use of the patient's address. Must be one of 'home', 'work', 'temp', 'old', or 'billing'"),
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parameters.NewStringParameterWithDefault(nameKey, "", "The patient's name. Can be a family name, given name, or both"),
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parameters.NewStringParameterWithDefault(givenNameKey, "", "A portion of the given name of the patient"),
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parameters.NewStringParameterWithDefault(familyNameKey, "", "A portion of the family name of the patient"),
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parameters.NewStringParameterWithDefault(phoneKey, "", "The patient's phone number"),
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parameters.NewStringParameterWithDefault(languageKey, "", "The patient's preferred language. Must be a valid BCP-47 code (e.g. 'en-US', 'es')"),
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parameters.NewStringParameterWithDefault(identifierKey, "", "An identifier for the patient"),
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parameters.NewBooleanParameterWithDefault(summaryKey, true, "Requests the server to return a subset of the resource. Return a limited subset of elements from the resource. Enabled by default to reduce response size. Use get-fhir-resource tool to get full resource details (preferred) or set to false to disable."),
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}
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if len(s.AllowedFHIRStores()) != 1 {
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params = append(params, parameters.NewStringParameter(common.StoreKey, "The FHIR store ID to retrieve the resource from."))
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}
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mcpManifest := tools.GetMcpManifest(cfg.Name, cfg.Description, cfg.AuthRequired, params, nil)
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// finish tool setup
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t := Tool{
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Config: cfg,
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Parameters: params,
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manifest: tools.Manifest{Description: cfg.Description, Parameters: params.Manifest(), AuthRequired: cfg.AuthRequired},
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mcpManifest: mcpManifest,
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}
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return t, nil
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}
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// validate interface
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var _ tools.Tool = Tool{}
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type Tool struct {
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Config
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Parameters parameters.Parameters `yaml:"parameters"`
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manifest tools.Manifest
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mcpManifest tools.McpManifest
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}
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func (t Tool) ToConfig() tools.ToolConfig {
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return t.Config
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}
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func (t Tool) Invoke(ctx context.Context, resourceMgr tools.SourceProvider, params parameters.ParamValues, accessToken tools.AccessToken) (any, error) {
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source, err := tools.GetCompatibleSource[compatibleSource](resourceMgr, t.Source, t.Name, t.Kind)
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if err != nil {
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return nil, err
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}
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storeID, err := common.ValidateAndFetchStoreID(params, source.AllowedFHIRStores())
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if err != nil {
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return nil, err
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}
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svc := source.Service()
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// Initialize new service if using user OAuth token
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if source.UseClientAuthorization() {
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tokenStr, err := accessToken.ParseBearerToken()
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if err != nil {
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return nil, fmt.Errorf("error parsing access token: %w", err)
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}
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svc, err = source.ServiceCreator()(tokenStr)
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if err != nil {
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return nil, fmt.Errorf("error creating service from OAuth access token: %w", err)
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}
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}
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var summary bool
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var opts []googleapi.CallOption
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for k, v := range params.AsMap() {
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if k == common.StoreKey {
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continue
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}
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if k == summaryKey {
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var ok bool
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summary, ok = v.(bool)
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if !ok {
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return nil, fmt.Errorf("invalid '%s' parameter; expected a boolean", summaryKey)
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}
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continue
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}
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val, ok := v.(string)
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if !ok {
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return nil, fmt.Errorf("invalid parameter '%s'; expected a string", k)
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}
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if val == "" {
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continue
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}
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switch k {
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case activeKey, deceasedKey, emailKey, genderKey, phoneKey, languageKey, identifierKey:
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opts = append(opts, googleapi.QueryParameter(k, val))
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case cityKey, countryKey, postalCodeKey, stateKey:
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opts = append(opts, googleapi.QueryParameter("address-"+k, val))
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case addressSubstringKey:
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opts = append(opts, googleapi.QueryParameter("address", val))
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case birthDateRangeKey, deathDateRangeKey:
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key := "birthdate"
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if k == deathDateRangeKey {
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key = "death-date"
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}
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parts := strings.Split(val, "/")
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if len(parts) != 2 {
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return nil, fmt.Errorf("invalid '%s' format; expected YYYY-MM-DD/YYYY-MM-DD", k)
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}
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var values []string
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if parts[0] != "" {
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values = append(values, "ge"+parts[0])
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}
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if parts[1] != "" {
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values = append(values, "le"+parts[1])
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}
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if len(values) != 0 {
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opts = append(opts, googleapi.QueryParameter(key, values...))
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}
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case addressUseKey:
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opts = append(opts, googleapi.QueryParameter("address-use", val))
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case nameKey:
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parts := strings.Split(val, " ")
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for _, part := range parts {
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opts = append(opts, googleapi.QueryParameter("name", part))
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}
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case givenNameKey:
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opts = append(opts, googleapi.QueryParameter("given", val))
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case familyNameKey:
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opts = append(opts, googleapi.QueryParameter("family", val))
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default:
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return nil, fmt.Errorf("unexpected parameter key %q", k)
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}
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}
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if summary {
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opts = append(opts, googleapi.QueryParameter("_summary", "text"))
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}
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name := fmt.Sprintf("projects/%s/locations/%s/datasets/%s/fhirStores/%s", source.Project(), source.Region(), source.DatasetID(), storeID)
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resp, err := svc.Projects.Locations.Datasets.FhirStores.Fhir.SearchType(name, "Patient", &healthcare.SearchResourcesRequest{ResourceType: "Patient"}).Do(opts...)
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if err != nil {
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return nil, fmt.Errorf("failed to search patient resources: %w", err)
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}
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defer resp.Body.Close()
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respBytes, err := io.ReadAll(resp.Body)
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if err != nil {
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return nil, fmt.Errorf("could not read response: %w", err)
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}
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if resp.StatusCode > 299 {
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return nil, fmt.Errorf("search: status %d %s: %s", resp.StatusCode, resp.Status, respBytes)
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}
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var jsonMap map[string]interface{}
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if err := json.Unmarshal([]byte(string(respBytes)), &jsonMap); err != nil {
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return nil, fmt.Errorf("could not unmarshal response as json: %w", err)
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}
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return jsonMap, nil
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}
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func (t Tool) ParseParams(data map[string]any, claims map[string]map[string]any) (parameters.ParamValues, error) {
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return parameters.ParseParams(t.Parameters, data, claims)
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}
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func (t Tool) EmbedParams(ctx context.Context, paramValues parameters.ParamValues, embeddingModelsMap map[string]embeddingmodels.EmbeddingModel) (parameters.ParamValues, error) {
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return parameters.EmbedParams(ctx, t.Parameters, paramValues, embeddingModelsMap, nil)
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}
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func (t Tool) Manifest() tools.Manifest {
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return t.manifest
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}
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func (t Tool) McpManifest() tools.McpManifest {
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return t.mcpManifest
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}
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func (t Tool) Authorized(verifiedAuthServices []string) bool {
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return tools.IsAuthorized(t.AuthRequired, verifiedAuthServices)
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}
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func (t Tool) RequiresClientAuthorization(resourceMgr tools.SourceProvider) (bool, error) {
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source, err := tools.GetCompatibleSource[compatibleSource](resourceMgr, t.Source, t.Name, t.Kind)
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if err != nil {
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return false, err
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}
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return source.UseClientAuthorization(), nil
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}
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func (t Tool) GetAuthTokenHeaderName(resourceMgr tools.SourceProvider) (string, error) {
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return "Authorization", nil
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}
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