* fix(filesystem): return string in structuredContent to match outputSchema
The directory_tree, move_file, and list_directory_with_sizes tools were
returning an array in structuredContent.content, but outputSchema declares
content as z.string(). This caused MCP error -32602 validation failures.
Changed structuredContent from { content: [contentBlock] } to { content: text }
to match the declared outputSchema and be consistent with other filesystem
tools like list_directory and search_files.
Fixes#3110, #3106, #3093🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(filesystem): add integration tests for structuredContent schema compliance
Adds tests to verify that directory_tree, list_directory_with_sizes, and
move_file tools return structuredContent.content as a string (matching
outputSchema) rather than an array.
These tests prevent regression of issues #3110, #3106, #3093.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
Co-authored-by: adam jones <domdomegg+git@gmail.com>
Adds metadata required for registering servers in the MCP registry:
- NPM servers (everything, filesystem, memory, sequentialthinking):
Added mcpName and repository fields to package.json
- PyPI servers (fetch, git, time):
Added mcp-name comment to README.md
Part of #3047
Update the SDK from ^1.19.1 to ^1.23.0 in all TypeScript reference servers:
- everything
- filesystem
- memory
- sequentialthinking
Also update everything server for SDK breaking changes:
- Update zod to ^3.25.0 (zod v4 compatibility)
- Fix ToolInput/ToolOutput types to use Tool["inputSchema"] instead of
inferring from zod schemas
- Fix result.content handling to support array format
Co-authored-by: Felix Weinberger <3823880+felixweinberger@users.noreply.github.com>
**Files touched**
- [src/filesystem/index.ts](../blob/HEAD/src/filesystem/index.ts) — add `annotations` metadata to each tool definition
- [src/filesystem/README.md](../blob/HEAD/src/filesystem/README.md) — document ToolAnnotations mapping for all filesystem tools
## Description
This change adds MCP `ToolAnnotations` (`readOnlyHint`, `idempotentHint`, `destructiveHint`) to all filesystem tools and documents the mapping in the filesystem README. MCP clients can now accurately distinguish read‑only vs. write tools, understand which operations are safe to retry, and highlight potentially destructive actions.
## Server Details
- **Server**: filesystem
- **Area**: tools (metadata returned via `listTools` / `ListToolsRequest`) and server docs
## Motivation and Context
Previously, the filesystem server did not expose ToolAnnotations, so many clients (e.g. ChatGPT Apps) conservatively treated filesystem tools as generic write operations. This led to:
- READ operations being surfaced with WRITE badges and confirmation prompts.
- No way for clients to know which write tools are idempotent or potentially destructive.
This PR aligns the implementation with `servers#2988` and updates the README to clearly document the semantics of each tool. Read‑only operations no longer need to be treated as writes, and destructive/idempotent behavior is explicit for UI and retry logic.
## How Has This Been Tested?
- `npm run build --workspace @modelcontextprotocol/server-filesystem`
- `npm test --workspaces --if-present`
## Breaking Changes
None.
## Types of changes
- [ ] Bug fix (non-breaking change which fixes an issue)
- [x] New feature (non-breaking change which adds functionality)
- [ ] Breaking change (fix or feature that would cause existing functionality to change)
- [x] Documentation update
## Checklist
- [x] I have read the [MCP Protocol Documentation](https://modelcontextprotocol.io)
- [x] My changes follows MCP security best practices
- [x] I have updated the server's README accordingly
- [x] I have tested this with an LLM client
- [x] My code follows the repository's style guidelines
- [x] New and existing tests pass locally
- [x] I have added appropriate error handling
- [ ] I have documented all environment variables and configuration options
## Additional context
None.
Co-authored-by: Valeriy_Pavlovich <vp@strato.space>
For text-only tool responses, simplify outputSchemas from complex nested
arrays to simple { content: z.string() } format. All tool responses now
include structuredContent matching their outputSchema, fixing MCP protocol
violations when tools had output schemas but no structured content.
This applies to both filesystem and everything servers.
Address two items from Camila's review:
1. Use blob type for non-image/non-audio media files, restoring the
original behavior. This matches the previous implementation which
used blob as the fallback for unknown binary types. Use type
assertion to satisfy the SDK's type constraints.
2. Reuse ReadTextFileArgsSchema.shape in the deprecated read_file tool
instead of redefining the schema inline.
* fix(filesystem): convert to modern TypeScript SDK APIs
Convert the filesystem server to use the modern McpServer API instead
of the low-level Server API.
Key changes:
- Replace Server with McpServer from @modelcontextprotocol/sdk/server/mcp.js
- Convert all 13 tools to use registerTool() instead of manual request handlers
- Use Zod schemas directly in inputSchema/outputSchema
- Add structuredContent to all tool responses
- Fix type literals to use 'as const' assertions
- Update roots protocol handling to use server.server.* pattern
- Fix tsconfig to exclude vitest.config.ts
Tools converted:
- read_file (deprecated)
- read_text_file
- read_media_file
- read_multiple_files
- write_file
- edit_file
- create_directory
- list_directory
- list_directory_with_sizes
- directory_tree
- move_file
- search_files
- get_file_info
- list_allowed_directories
The modern API provides:
- Less boilerplate code
- Better type safety with Zod
- More declarative tool registration
- Cleaner, more maintainable code
* fix: use default import for minimatch
minimatch v10+ uses default export instead of named export
* fix(filesystem): use named import for minimatch
The minimatch module doesn't have a default export, so we need to use
the named import syntax instead.
Fixes TypeScript compilation error:
error TS2613: Module has no default export. Did you mean to use
'import { minimatch } from "minimatch"' instead?
test files were being compiled into dist during build,
causing issues in docker environments. added exclude
pattern to tsconfig to skip __tests__ directory.
fixes#2928
The test was expecting forward slashes to always be converted to backslashes, but normalizePath() only does this on Windows (process.platform === 'win32'). On Linux/Unix, forward slashes are preserved.
Improved the fix by:
1. Removing relative path assertion from the "as is" test since it doesn't match intent
2. Adding a dedicated test that validates platform-specific behavior naturally without mocking
3. Using the actual platform instead of unreliable Object.defineProperty mocking
This approach is more reliable and clearly documents expected behavior per platform.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
The afterEach function was used in the test file but not imported from vitest, causing a build failure. This was introduced in PR #2851.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Replace Jest dependencies with Vitest and @vitest/coverage-v8
- Update test scripts to use 'vitest run --coverage'
- Create vitest.config.ts for both servers with node environment and coverage settings
- Update all test files:
- Change imports from '@jest/globals' to 'vitest'
- Replace jest.mock() with vi.mock()
- Replace jest.fn() with vi.fn()
- Update mock clearing/restoring to use vi methods
- Remove jest.config.cjs files
- All 151 tests passing (24 in sequentialthinking, 127 in filesystem)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Update documentation with directory_tree declaration
- Add excludePatterns parameter to DirectoryTreeArgsSchema
- Implement pattern exclusion in buildTree function using minimatch
- Pass excludePatterns through recursive calls
- Support both simple and glob patterns for exclusion
- Maintain consistent behavior with search_files implementation
* Add tests and fix implementation
---------
Co-authored-by: Ola Hungerford <olahungerford@gmail.com>
Co-authored-by: Adam Jones <adamj+git@anthropic.com>
Co-authored-by: Adam Jones <adamj@anthropic.com>
* fix: comprehensive Windows path handling improvements
- Add path-utils module for consistent path handling
- Handle Windows paths with spaces via proper quoting
- Support Unix-style Windows paths (/c/path)
- Support WSL paths (/mnt/c/path)
- Add comprehensive test coverage
- Fix path normalization for all path formats
Closes#447
* tested locally and working now
* Add filesystem path utils and tests
* Ensure Windows drive letters are capitalized in normalizePath
* adding test for gh pr comment
* pushing jest and windows testing config
* last commit? fixing comments on PR
* Fix bin and bump sdk
* Remove redundant commonjs version of path-utils and import from ts version
* Remove copying cjs file
* Remove copying run-server
* Remove complex args parsing and do other cleanup
* Add missing tools details to Readme
* Move utility functions from index to lib
* Add more tests and handle very small and very large files edge cases
* Finish refactoring and include original security fix comments
* On Windows, also check for drive root
* Check symlink support on restricted Windows environments
* Fix tests
* Bump SDK and package version
* Clean up
---------
Co-authored-by: olaservo <olahungerford@gmail.com>
Co-authored-by: adam jones <adamj+git@anthropic.com>
The tool description was ambiguous about subdirectory access within allowed directories.
Updated the description to explicitly state that subdirectories are also accessible.
Co-authored-by: claude[bot] <209825114+claude[bot]@users.noreply.github.com>
Co-authored-by: Ola Hungerford <olaservo@users.noreply.github.com>
The filesystem server does not actually implement MCP Resources capability
but the README incorrectly claimed it provides 'file://system' resource interface.
Fixes#399
Co-authored-by: Ola Hungerford <olaservo@users.noreply.github.com>
- Remove unnecessary explanatory note about JSON format
- JSON examples already demonstrate the correct format clearly
- Streamlines documentation to focus on essential information
- Maintains reference to official VS Code MCP documentation
The removed note was redundant since both configuration methods
use identical JSON structure shown in the examples.
- Add link to official VS Code MCP documentation in all server READMEs
- Enhances existing VS Code installation instructions with authoritative reference
- Provides users with comprehensive documentation for advanced configuration
- Complements the existing two-method approach with additional resources
Affects: everything, filesystem, git, memory, sequentialthinking
- Replace outdated 'Preferences: Open Settings (JSON)' instructions
- Add proper guidance for 'MCP: Open User Configuration' command
- Update JSON examples to remove mcp wrapper key
- Clarify user vs workspace configuration methods
- Fixes issue with outdated documentation across all servers
Affects: sequentialthinking, filesystem, memory, everything, git
- Add symlink resolution using fs.realpath() for security consistency
- Support home directory expansion (~/) in root URI specifications
- Improve error handling with null checks, detailed error messages, and informative logging
- Change allowedDirectories from constant to variable to support roots protocol directory management
- Extract roots processing logic from index.ts into testable roots-utils.ts module and add Test suite
- Update README to recommend MCP roots protocol for dynamic directory management
- Add support for dynamic directory updates via MCP roots protocol
- Allow clients to override command-line directories at runtime
- Maintain backwards compatibility with existing command-line args
- Add comprehensive error handling for edge cases
- Update documentation to explain both configuration methods
Fixes#401
