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Update revdep and cran comments

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Barret Schloerke
2025-12-01 14:27:48 -05:00
parent 28e195666c
commit 047ed21be0
4 changed files with 111 additions and 46 deletions
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34
cran-comments.md
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@@ -1,6 +1,6 @@
## Comments
#### 2025-11-07
#### 2025-12-01
Hi CRAN,
@@ -15,7 +15,9 @@ Carson
## `R CMD check` results:
The maintainer change is correctly detected. The URL check is flagging a 429 error from Wikipedia, which is likely temporary as the URL is valid when visited manually.
The maintainer change is correctly detected. The URL check sometimes flags a 429
error from Wikipedia, which is a temporary issue since the URL is valid when
visited manually.
```
* checking CRAN incoming feasibility ... [19s] NOTE
@@ -44,18 +46,27 @@ Unresolved PRs submitted in 2025/06:
* ShinyLink - https://github.com/cdc-addm/ShinyLink/pull/3
* shinySbm - https://github.com/Jo-Theo/shinySbm/pull/2
Unresolved PR submitted in 2025/10/29:
* biodosetools - PR made 2025/10/29 - https://github.com/biodosetools-team/biodosetools/pull/64
* inshiny - PR made 2025/10/29 - https://github.com/nicholasdavies/inshiny/pull/1
## Reverse dependency false positives
* SouthParkRshiny - New NOTE about installed package size. This is unrelated to any new changes in Shiny.
> ```
> * checking installed package size ... NOTE
> installed size is 8.6Mb
> sub-directories of 1Mb or more:
> data 8.0Mb
> ```
## revdepcheck results
We checked 1386 reverse dependencies (1380 from CRAN + 6 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
We checked 1395 reverse dependencies (1388 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
* We saw 6 new problems
* We failed to check 17 packages
* We saw 7 new problems
* We failed to check 21 packages
Issues with CRAN packages are summarised below.
@@ -82,9 +93,12 @@ Issues with CRAN packages are summarised below.
* shinySbm
checking tests ... ERROR
* SouthParkRshiny
checking installed package size ... NOTE
### Failed to check
* cocktailApp
* boinet
* ctsem
* FAfA
* fio
@@ -92,12 +106,16 @@ Issues with CRAN packages are summarised below.
* GDINA
* ggsem
* grandR
* hbsaems
* lavaan.shiny
* lcsm
* linkspotter
* loon.shiny
* MOsemiind
* MVN
* RCTrep
* rstanarm
* semdrw
* sphereML
* SurprisalAnalysis
* TestAnaAPP
* tricolore

30
revdep/README.md
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@@ -1,13 +1,14 @@
# Revdeps
## Failed to check (23)
## Failed to check (28)
|package |version |error |warning |note |
|:--------------------|:-------|:-----|:-------|:----|
|ADAMgui |? | | | |
|cocktailApp |0.2.3 |1 | | |
|boinet |1.5.0 |1 | | |
|ctsem |3.10.4 |1 | |1 |
|EMMAgeo |? | | | |
|FactEff |? | | | |
|FAfA |? | | | |
|fio |0.1.6 |1 | | |
|FossilSimShiny |? | | | |
@@ -15,10 +16,15 @@
|ggsem |? | | | |
|grandR |? | | | |
|GSVA |? | | | |
|hbsaems |0.1.1 |1 | | |
|lavaan.shiny |? | | | |
|lcsm |? | | | |
|linkspotter |1.3.0 |1 | | |
|loon.shiny |? | | | |
|MOsemiind |0.1.0 |1 | | |
|MVN |6.2 |1 | | |
|Prostar |? | | | |
|RCTrep |1.2.0 |1 | | |
|recmap |? | | | |
|rstanarm |2.32.2 |1 | | |
|semdrw |? | | | |
@@ -26,16 +32,16 @@
|StatTeacherAssistant |? | | | |
|SurprisalAnalysis |? | | | |
|TestAnaAPP |? | | | |
|tricolore |1.2.4 |1 | | |
## New problems (6)
## New problems (7)
|package |version |error |warning |note |
|:-------------|:-------|:------|:-------|:----|
|[biodosetools](problems.md#biodosetools)|3.7.1 |__+1__ | | |
|[inshiny](problems.md#inshiny)|0.1.0 |__+3__ | | |
|[omicsTools](problems.md#omicstools)|1.0.5 |__+1__ | | |
|[shinyGovstyle](problems.md#shinygovstyle)|0.1.0 |__+1__ | | |
|[ShinyLink](problems.md#shinylink)|0.2.2 |__+1__ | | |
|[shinySbm](problems.md#shinysbm)|0.1.5 |__+1__ | |1 |
|package |version |error |warning |note |
|:---------------|:-------|:------|:-------|:--------|
|[biodosetools](problems.md#biodosetools)|3.7.1 |__+1__ | | |
|[inshiny](problems.md#inshiny)|0.1.0 |__+3__ | | |
|[omicsTools](problems.md#omicstools)|1.0.5 |__+1__ | | |
|[shinyGovstyle](problems.md#shinygovstyle)|0.1.0 |__+1__ | | |
|[ShinyLink](problems.md#shinylink)|0.2.2 |__+1__ | | |
|[shinySbm](problems.md#shinysbm)|0.1.5 |__+1__ | |1 |
|[SouthParkRshiny](problems.md#southparkrshiny)|1.0.0 | | |1 __+1__ |

17
revdep/cran.md
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@@ -1,9 +1,9 @@
## revdepcheck results
We checked 1386 reverse dependencies (1380 from CRAN + 6 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
We checked 1395 reverse dependencies (1388 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
* We saw 6 new problems
* We failed to check 17 packages
* We saw 7 new problems
* We failed to check 21 packages
Issues with CRAN packages are summarised below.
@@ -30,9 +30,12 @@ Issues with CRAN packages are summarised below.
* shinySbm
checking tests ... ERROR
* SouthParkRshiny
checking installed package size ... NOTE
### Failed to check
* cocktailApp (NA)
* boinet (NA)
* ctsem (NA)
* FAfA (NA)
* fio (NA)
@@ -40,12 +43,16 @@ Issues with CRAN packages are summarised below.
* GDINA (NA)
* ggsem (NA)
* grandR (NA)
* hbsaems (NA)
* lavaan.shiny (NA)
* lcsm (NA)
* linkspotter (NA)
* loon.shiny (NA)
* MOsemiind (NA)
* MVN (NA)
* RCTrep (NA)
* rstanarm (NA)
* semdrw (NA)
* sphereML (NA)
* SurprisalAnalysis (NA)
* TestAnaAPP (NA)
* tricolore (NA)

76
revdep/problems.md
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@@ -27,15 +27,15 @@ Run `revdepcheck::cloud_details(, "biodosetools")` for more info
> test_check("biodosetools")
! Problem with `glm()` -> constraint ML optimization will be used instead
...
lines(actual) vs lines(expected)
- "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">"
- " <span class=\"action-label\">go</span>"
- "</button>"
+ "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>"
[ FAIL 2 | WARN 1 | SKIP 1 | PASS 455 ]
Error: Test failures
Error:
! Test failures.
Execution halted
```
@@ -93,15 +93,15 @@ Run `revdepcheck::cloud_details(, "inshiny")` for more info
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
── Error ('test-action.R:8:5'): button is stable ───────────────────────────────
Error in `check_tags(widget, shiny::tags$button(), "shiny::actionButton()")`: Unexpected tag structure from shiny::actionButton(). Please contact the package maintainer.
Backtrace:
▆
1. └─testthat::expect_snapshot(...) at test-action.R:8:5
2. └─rlang::cnd_signal(state$error)
1. ├─inshiny:::cc(...)
2. │ └─base::cat(as.character(x)) at ./helper.R:2:5
3. └─inshiny::inline_button(...)
4. └─inshiny:::check_tags(widget, shiny::tags$button(), "shiny::actionButton()")
[ FAIL 2 | WARN 0 | SKIP 9 | PASS 24 ]
Error: Test failures
Error:
! Test failures.
Execution halted
```
@@ -159,15 +159,15 @@ Run `revdepcheck::cloud_details(, "omicsTools")` for more info
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
lines(actual) vs lines(expected)
- "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">"
- " <span class=\"action-label\">go</span>"
- "</button>"
+ "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>"
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 94 ]
Error: Test failures
Error:
! Test failures.
Execution halted
```
@@ -196,15 +196,19 @@ Run `revdepcheck::cloud_details(, "shinyGovstyle")` for more info
> library(shinyGovstyle)
>
> test_check("shinyGovstyle")
Saving _problems/test-backlink_Input-7.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 125 ]
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-backlink_Input.R:4:3'): backlink works ───────────────────────
backlink_check$children[[1]][[2]] not identical to "Back".
Expected `backlink_check$children[[1]][[2]]` to be identical to "Back".
Differences:
target is NULL, current is character
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 125 ]
Error: Test failures
Error:
! Test failures.
Execution halted
```
@@ -237,15 +241,15 @@ Run `revdepcheck::cloud_details(, "ShinyLink")` for more info
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
lines(actual) vs lines(expected)
- "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">"
- " <span class=\"action-label\">go</span>"
- "</button>"
+ "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>"
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 145 ]
Error: Test failures
Error:
! Test failures.
Execution halted
```
@@ -257,7 +261,7 @@ Run `revdepcheck::cloud_details(, "ShinyLink")` for more info
* GitHub: https://github.com/Jo-Theo/shinySbm
* Source code: https://github.com/cran/shinySbm
* Date/Publication: 2023-09-07 21:50:02 UTC
* Number of recursive dependencies: 133
* Number of recursive dependencies: 134
Run `revdepcheck::cloud_details(, "shinySbm")` for more info
@@ -278,15 +282,15 @@ Run `revdepcheck::cloud_details(, "shinySbm")` for more info
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
lines(actual) vs lines(expected)
- "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">"
- " <span class=\"action-label\">go</span>"
- "</button>"
+ "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>"
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 141 ]
Error: Test failures
Error:
! Test failures.
Execution halted
```
@@ -317,3 +321,33 @@ Run `revdepcheck::cloud_details(, "shinySbm")` for more info
checkRd: (-1) visSbm.default.Rd:51: Lost braces in \itemize; meant \describe ?
```
# SouthParkRshiny
<details>
* Version: 1.0.0
* GitHub: https://github.com/Amalan-ConStat/SouthParkRshiny
* Source code: https://github.com/cran/SouthParkRshiny
* Date/Publication: 2024-03-09 11:10:08 UTC
* Number of recursive dependencies: 112
Run `revdepcheck::cloud_details(, "SouthParkRshiny")` for more info
</details>
## Newly broken
* checking installed package size ... NOTE
```
installed size is 8.6Mb
sub-directories of 1Mb or more:
data 8.0Mb
```
## In both
* checking data for non-ASCII characters ... NOTE
```
Note: found 1562 marked UTF-8 strings
```