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preemptively run revdepcheck. 5 failures.

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Barret Schloerke
2025-08-18 09:10:19 -04:00
parent 80a9ff470c
commit 0e355ed25c
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33
revdep/README.md
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# Revdeps
## Failed to check (22)
## Failed to check (12)
|package |version |error |warning |note |
|:--------------------|:-------|:-----|:-------|:----|
|bigPint |? | | | |
|bioCancer |? | | | |
|EBImage |? | | | |
|FAfA |0.3 |1 | | |
|EMMAgeo |? | | | |
|FAfA |? | | | |
|fio |0.1.6 |1 | | |
|GeneNetworkBuilder |? | | | |
|gradientPickerD3 |? | | | |
|InterCellar |? | | | |
|LACE |? | | | |
|GDINA |? | | | |
|GSVA |? | | | |
|lavaan.shiny |1.2 |1 | | |
|LDABiplots |? | | | |
|LDAShiny |? | | | |
|loon.shiny |? | | | |
|MatrixQCvis |? | | | |
|metricsgraphics |? | | | |
|modchart |? | | | |
|omicsViewer |? | | | |
|RSP |0.4 |1 | | |
|Prostar |? | | | |
|rstanarm |2.32.1 |1 | | |
|sphereML |0.1.1 |1 | | |
|StatTeacherAssistant |? | | | |
|TestAnaAPP |1.1.2 |1 | | |
## New problems (5)
|package |version |error |warning |note |
|:-------------|:-------|:------|:-------|:------|
|[omicsTools](problems.md#omicstools)|1.0.5 |__+1__ | | |
|[PopED](problems.md#poped)|0.7.0 | | |__+1__ |
|[shinyGovstyle](problems.md#shinygovstyle)|0.1.0 |__+1__ | | |
|[ShinyLink](problems.md#shinylink)|0.2.2 |__+1__ | | |
|[shinySbm](problems.md#shinysbm)|0.1.5 |__+1__ | |1 |

24
revdep/cran.md
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## revdepcheck results
We checked 1344 reverse dependencies (1330 from CRAN + 14 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
We checked 1349 reverse dependencies (1345 from CRAN + 4 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
* We saw 0 new problems
* We saw 5 new problems
* We failed to check 8 packages
Issues with CRAN packages are summarised below.
### New problems
(This reports the first line of each new failure)
* omicsTools
checking tests ... ERROR
* PopED
checking installed package size ... NOTE
* shinyGovstyle
checking tests ... ERROR
* ShinyLink
checking tests ... ERROR
* shinySbm
checking tests ... ERROR
### Failed to check
* FAfA (NA)
* fio (NA)
* GDINA (NA)
* lavaan.shiny (NA)
* loon.shiny (NA)
* RSP (NA)
* rstanarm (NA)
* sphereML (NA)
* TestAnaAPP (NA)

213
revdep/problems.md
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@@ -1 +1,212 @@
*Wow, no problems at all. :)*
# omicsTools
<details>
* Version: 1.0.5
* GitHub: https://github.com/YaoxiangLi/omicsTools
* Source code: https://github.com/cran/omicsTools
* Date/Publication: 2023-07-03 16:20:02 UTC
* Number of recursive dependencies: 87
Run `revdepcheck::cloud_details(, "omicsTools")` for more info
</details>
## Newly broken
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
lines(actual) vs lines(expected)
- "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">"
- " <span class=\"action-label\">go</span>"
- "</button>"
+ "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>"
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 94 ]
Error: Test failures
Execution halted
```
# PopED
<details>
* Version: 0.7.0
* GitHub: https://github.com/andrewhooker/PopED
* Source code: https://github.com/cran/PopED
* Date/Publication: 2024-10-07 19:30:02 UTC
* Number of recursive dependencies: 139
Run `revdepcheck::cloud_details(, "PopED")` for more info
</details>
## Newly broken
* checking installed package size ... NOTE
```
installed size is 5.5Mb
sub-directories of 1Mb or more:
R 1.5Mb
doc 1.4Mb
test 1.1Mb
```
# shinyGovstyle
<details>
* Version: 0.1.0
* GitHub: https://github.com/moj-analytical-services/shinyGovstyle
* Source code: https://github.com/cran/shinyGovstyle
* Date/Publication: 2024-09-12 14:40:02 UTC
* Number of recursive dependencies: 48
Run `revdepcheck::cloud_details(, "shinyGovstyle")` for more info
</details>
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(shinyGovstyle)
>
> test_check("shinyGovstyle")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 125 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-backlink_Input.R:4:3'): backlink works ───────────────────────
backlink_check$children[[1]][[2]] not identical to "Back".
target is NULL, current is character
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 125 ]
Error: Test failures
Execution halted
```
# ShinyLink
<details>
* Version: 0.2.2
* GitHub: NA
* Source code: https://github.com/cran/ShinyLink
* Date/Publication: 2023-01-18 11:40:05 UTC
* Number of recursive dependencies: 129
Run `revdepcheck::cloud_details(, "ShinyLink")` for more info
</details>
## Newly broken
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
lines(actual) vs lines(expected)
- "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">"
- " <span class=\"action-label\">go</span>"
- "</button>"
+ "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>"
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 145 ]
Error: Test failures
Execution halted
```
# shinySbm
<details>
* Version: 0.1.5
* GitHub: https://github.com/Jo-Theo/shinySbm
* Source code: https://github.com/cran/shinySbm
* Date/Publication: 2023-09-07 21:50:02 UTC
* Number of recursive dependencies: 134
Run `revdepcheck::cloud_details(, "shinySbm")` for more info
</details>
## Newly broken
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
lines(actual) vs lines(expected)
- "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">"
- " <span class=\"action-label\">go</span>"
- "</button>"
+ "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>"
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 141 ]
Error: Test failures
Execution halted
```
## In both
* checking Rd files ... NOTE
```
checkRd: (-1) FungusTreeNetwork.Rd:15-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:22-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:33: Lost braces; missing escapes or markup?
33 | \item{tree_tree}{Results of \code{estimateSimpleSBM} for {sbm}
| ^
checkRd: (-1) FungusTreeNetwork.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:35: Lost braces; missing escapes or markup?
35 | \item{fungus_tree}{Results of \code{estimateBipartiteSBM} for {sbm}
| ^
...
checkRd: (-1) visSbm.default.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:51: Lost braces in \itemize; meant \describe ?
```