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chore: revdepcheck
This commit is contained in:
Garrick Aden-Buie
@@ -1,43 +1,34 @@
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# Revdeps
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# Revdeps
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## Failed to check (29)
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## Failed to check (20)
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|package |version |error |warning |note |
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|package |version |error |warning |note |
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|:---------------|:-------|:-----|:-------|:----|
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|:------------------|:-------|:-----|:-------|:----|
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|alevinQC |? | | | |
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|animalEKF |1.2 |1 | | |
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|animalEKF |1.2 |1 | | |
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|AovBay |0.1.0 |1 | | |
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|animaltracker |? | | | |
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|Certara.VPCResults |3.0.2 |1 | | |
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|antaresViz |? | | | |
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|chipPCR |1.0-2 |1 | | |
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|AovBay |0.1.0 |1 | | |
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|ctsem |3.10.1 |1 | | |
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|bdclean |? | | | |
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|dartR.sim |? | | | |
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|chipPCR |1.0-2 |1 | | |
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|diveR |? | | | |
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|ctsem |3.10.0 |1 | | |
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|gap |? | | | |
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|diveR |? | | | |
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|jsmodule |? | | | |
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|DynNom |5.1 |1 | | |
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|loon.shiny |? | | | |
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|hydflood |? | | | |
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|robmedExtra |0.1.1 |1 | | |
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|loon.shiny |? | | | |
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|rstanarm |2.32.1 |1 | | |
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|modchart |? | | | |
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|SensMap |0.7 |1 | | |
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|MODIStsp |? | | | |
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|Seurat |5.1.0 |1 | |1 |
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|protGear |? | | | |
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|shinyTempSignal |0.0.8 |1 | | |
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|robmedExtra |0.1.0 |1 | | |
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|Signac |1.14.0 |1 | | |
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|RQuantLib |0.4.23 |1 | | |
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|statsr |0.3.0 |1 | | |
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|rstanarm |2.32.1 |1 | | |
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|TestAnaAPP |1.1.2 |1 | | |
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|scPipe |? | | | |
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|tidyvpc |1.5.2 |1 | | |
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|sen2r |? | | | |
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|visR |? | | | |
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|SensMap |0.7 |1 | | |
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|Seurat |5.1.0 |1 | | |
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|shinyTempSignal |0.0.8 |1 | | |
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|Signac |1.13.0 |1 | | |
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|simplevis |? | | | |
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|statsr |0.3.0 |1 | | |
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|teachingApps |? | | | |
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|tidyvpc |1.5.1 |1 | | |
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|TVTB |? | | | |
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## New problems (2)
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## New problems (2)
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|package |version |error |warning |note |
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|package |version |error |warning |note |
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|:-------|:-------|:--------|:-------|:------|
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|:-------|:-------|:-----|:-------|:------|
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|[EgoCor](problems.md#egocor)|1.2.0 |1 __+1__ | |-1 |
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|[HH](problems.md#hh)|3.1-52 | | |__+1__ |
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|[mxfda](problems.md#mxfda)|0.2.1 | | |__+1__ |
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|[PopED](problems.md#poped)|0.7.0 | | |__+1__ |
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@@ -1,36 +1,39 @@
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## revdepcheck results
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## revdepcheck results
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We checked 1221 reverse dependencies (1208 from CRAN + 13 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
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We checked 1278 reverse dependencies (1277 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
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* We saw 2 new problems
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* We saw 2 new problems
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* We failed to check 16 packages
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* We failed to check 19 packages
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Issues with CRAN packages are summarised below.
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Issues with CRAN packages are summarised below.
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### New problems
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### New problems
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(This reports the first line of each new failure)
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(This reports the first line of each new failure)
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* EgoCor
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* HH
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checking running R code from vignettes ... ERROR
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checking installed package size ... NOTE
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* mxfda
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* PopED
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checking installed package size ... NOTE
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checking installed package size ... NOTE
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### Failed to check
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### Failed to check
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* animalEKF (NA)
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* animalEKF (NA)
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* AovBay (NA)
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* AovBay (NA)
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* chipPCR (NA)
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* Certara.VPCResults (NA)
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* ctsem (NA)
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* chipPCR (NA)
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* diveR (NA)
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* ctsem (NA)
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* DynNom (NA)
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* dartR.sim (NA)
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* loon.shiny (NA)
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* diveR (NA)
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* robmedExtra (NA)
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* gap (NA)
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* RQuantLib (NA)
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* jsmodule (NA)
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* rstanarm (NA)
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* loon.shiny (NA)
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* SensMap (NA)
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* robmedExtra (NA)
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* Seurat (NA)
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* rstanarm (NA)
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* shinyTempSignal (NA)
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* SensMap (NA)
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* Signac (NA)
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* Seurat (NA)
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* statsr (NA)
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* shinyTempSignal (NA)
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* tidyvpc (NA)
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* Signac (NA)
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* statsr (NA)
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* TestAnaAPP (NA)
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* tidyvpc (NA)
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@@ -1,84 +1,14 @@
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# EgoCor
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# HH
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<details>
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<details>
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* Version: 1.2.0
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* Version: 3.1-52
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* GitHub: https://github.com/julia-dyck/EgoCor
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* GitHub: NA
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* Source code: https://github.com/cran/EgoCor
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* Source code: https://github.com/cran/HH
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* Date/Publication: 2024-03-28 18:10:02 UTC
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* Date/Publication: 2024-02-11 00:00:02 UTC
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* Number of recursive dependencies: 74
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* Number of recursive dependencies: 165
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Run `revdepcheck::cloud_details(, "EgoCor")` for more info
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Run `revdepcheck::cloud_details(, "HH")` for more info
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</details>
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## Newly broken
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* checking running R code from vignettes ... ERROR
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```
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Errors in running code in vignettes:
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when running code in ‘Intro_to_EgoCor.Rmd’
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...
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Warning in gstat::fit.variogram(emp.sv, model = v, fit.sills = TRUE, fit.ranges = TRUE, :
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linear model has singular covariance matrix
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Warning in gstat::fit.variogram(emp.sv, model = v, fit.sills = TRUE, fit.ranges = TRUE, :
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linear model has singular covariance matrix
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Warning in gstat::fit.variogram(emp.sv, model = v, fit.sills = TRUE, fit.ranges = TRUE, :
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No convergence after 200 iterations: try different initial values?
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When sourcing ‘Intro_to_EgoCor.R’:
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Error: missing value where TRUE/FALSE needed
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Execution halted
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‘Intro_to_EgoCor.Rmd’ using ‘UTF-8’... failed
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```
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## Newly fixed
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* checking re-building of vignette outputs ... NOTE
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```
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Error(s) in re-building vignettes:
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--- re-building ‘Intro_to_EgoCor.Rmd’ using rmarkdown
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```
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## In both
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* checking examples ... ERROR
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```
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Running examples in ‘EgoCor-Ex.R’ failed
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The error most likely occurred in:
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> ### Name: vario.reg.prep
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> ### Title: Adjustment for covariates before semi-variogram model fitting
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> ### Aliases: vario.reg.prep
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>
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> ### ** Examples
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>
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> ## Example 1
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...
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+ }
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Warning in check_dep_version() :
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ABI version mismatch:
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lme4 was built with Matrix ABI version 1
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Current Matrix ABI version is 0
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Please re-install lme4 from source or restore original ‘Matrix’ package
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Error in initializePtr() :
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function 'cholmod_factor_ldetA' not provided by package 'Matrix'
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Calls: <Anonymous> ... initialize -> <Anonymous> -> initializePtr -> .Call
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Execution halted
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```
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# mxfda
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<details>
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* Version: 0.2.1
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* GitHub: https://github.com/julia-wrobel/mxfda
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* Source code: https://github.com/cran/mxfda
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* Date/Publication: 2024-05-08 11:00:02 UTC
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* Number of recursive dependencies: 220
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Run `revdepcheck::cloud_details(, "mxfda")` for more info
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</details>
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</details>
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@@ -86,8 +16,34 @@ Run `revdepcheck::cloud_details(, "mxfda")` for more info
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* checking installed package size ... NOTE
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* checking installed package size ... NOTE
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```
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```
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installed size is 5.6Mb
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installed size is 5.1Mb
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sub-directories of 1Mb or more:
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sub-directories of 1Mb or more:
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data 4.0Mb
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R 1.5Mb
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help 1.5Mb
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```
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# PopED
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<details>
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* Version: 0.7.0
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* GitHub: https://github.com/andrewhooker/PopED
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* Source code: https://github.com/cran/PopED
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* Date/Publication: 2024-10-07 19:30:02 UTC
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* Number of recursive dependencies: 140
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Run `revdepcheck::cloud_details(, "PopED")` for more info
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</details>
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## Newly broken
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* checking installed package size ... NOTE
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```
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installed size is 5.5Mb
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sub-directories of 1Mb or more:
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R 1.5Mb
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doc 1.4Mb
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test 1.1Mb
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```
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```
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