github/shiny
1
1
Fork 0
mirror of https://github.com/rstudio/shiny.git synced 2026-01-12 08:27:56 -05:00
Code Issues Packages Projects Releases Wiki Activity

Update cran-comments.md

Browse Source
This commit is contained in:
Barret Schloerke
2025-12-08 16:21:04 -05:00
parent c7116eb857
commit e719d8a84f
4 changed files with 111 additions and 473 deletions
Download Patch File Download Diff File Expand all files Collapse all files

158
cran-comments.md
View File

@@ -1,121 +1,129 @@
## Comments
#### 2025-12-01
#### 2025-12-08
Hi CRAN,
Test has been removed from CRAN checks.
We made changes to underlying structures that packages are not suppose to test. PRs were provided for each failing package.
Also added a couple bug fixes as found by users.
Maintainer change: From Winston Chang to Carson Sievert.
Please let me know if you need any further information.
Please let me know if you need any further changes.
Thank you,
Carson
#### 2025-12-04
Error:
```
Check Details
Version: 1.12.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [100s/394s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(shiny)
>
> test_check("shiny")
Saving _problems/test-timer-35.R
[ FAIL 1 | WARN 0 | SKIP 22 | PASS 1981 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• File system is not case-sensitive (1): 'test-app.R:36:5'
• I'm not sure of a great way to test this without timers. (1):
'test-test-server.R:216:3'
• Not testing in CI (1): 'test-devmode.R:17:3'
• On CRAN (18): 'test-actionButton.R:59:1', 'test-busy-indication.R:1:1',
'test-busy-indication.R:15:1', 'test-busy-indication.R:50:1',
'test-otel-error.R:1:1', 'test-otel-mock.R:1:1', 'test-pkgdown.R:3:3',
'test-reactivity.r:146:1', 'test-reactivity.r:1240:5',
'test-reactivity.r:1240:5', 'test-stacks-deep.R:93:1',
'test-stacks-deep.R:141:1', 'test-stacks.R:140:3', 'test-tabPanel.R:46:1',
'test-tabPanel.R:66:1', 'test-tabPanel.R:73:1', 'test-tabPanel.R:83:1',
'test-utils.R:177:3'
• {shinytest2} is not installed (1): 'test-test-shinyAppTemplate.R:2:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-timer.R:35:3'): Unscheduling works ───────────────────────────
Expected `timerCallbacks$.times` to be identical to `origTimes`.
Differences:
`attr(actual, 'row.names')` is an integer vector ()
`attr(expected, 'row.names')` is a character vector ()
[ FAIL 1 | WARN 0 | SKIP 22 | PASS 1981 ]
Error:
! Test failures.
Execution halted
```
#### 2025-12-03
```
Dear maintainer,
Please see the problems shown on
<https://cran.r-project.org/web/checks/check_results_shiny.html>.
Please correct before 2025-12-17 to safely retain your package on CRAN.
The CRAN Team
```
## `R CMD check` results:
The maintainer change is correctly detected. The URL check sometimes flags a 429
error from Wikipedia, which is a temporary issue since the URL is valid when
visited manually.
0 errors | 0 warning | 1 note
```
* checking CRAN incoming feasibility ... [19s] NOTE
Maintainer: 'Carson Sievert <barret@posit.co>'
─ checking CRAN incoming feasibility ... [7s/70s] NOTE (1m 9.5s)
Maintainer: ‘Carson Sievert <carson@posit.co>’
New maintainer:
Carson Sievert <barret@posit.co>
Old maintainer(s):
Winston Chang <winston@posit.co>
Found the following (possibly) invalid URLs:
URL: https://en.wikipedia.org/wiki/Reactive_programming
From: README.md
Status: 429
Message: Too Many Requests
Days since last update: 5
```
## Reverse dependency fixes
The revdep checks below are failing due to changes made in https://github.com/rstudio/shiny/pull/4249 .
Unresolved PRs submitted in 2025/06:
* omicsTools - https://github.com/cheemalab/omicsTools/pull/1
* shinyGovstyle - https://github.com/dfe-analytical-services/shinyGovstyle/pull/155
* ShinyLink - https://github.com/cdc-addm/ShinyLink/pull/3
* shinySbm - https://github.com/Jo-Theo/shinySbm/pull/2
Unresolved PR submitted in 2025/10/29:
* biodosetools - PR made 2025/10/29 - https://github.com/biodosetools-team/biodosetools/pull/64
* inshiny - PR made 2025/10/29 - https://github.com/nicholasdavies/inshiny/pull/1
## Reverse dependency false positives
* SouthParkRshiny - New NOTE about installed package size. This is unrelated to any new changes in Shiny.
> ```
> * checking installed package size ... NOTE
> installed size is 8.6Mb
> sub-directories of 1Mb or more:
> data 8.0Mb
> ```
## revdepcheck results
We checked 1395 reverse dependencies (1388 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
We checked 1383 reverse dependencies (1376 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
* We saw 7 new problems
* We failed to check 21 packages
* We saw 0 new problems
* We failed to check 31 packages
Issues with CRAN packages are summarised below.
### New problems
(This reports the first line of each new failure)
* biodosetools
checking tests ... ERROR
* inshiny
checking examples ... ERROR
checking tests ... ERROR
checking re-building of vignette outputs ... ERROR
* omicsTools
checking tests ... ERROR
* shinyGovstyle
checking tests ... ERROR
* ShinyLink
checking tests ... ERROR
* shinySbm
checking tests ... ERROR
* SouthParkRshiny
checking installed package size ... NOTE
### Failed to check
* AssumpSure
* boinet
* brms
* cheem
* ctsem
* detourr
* FAfA
* fio
* fitteR
* FossilSimShiny
* GDINA
* ggsem
* grandR
* hbsaems
* langevitour
* lavaan.shiny
* lcsm
* linkspotter
* loon.shiny
* MOsemiind
* MVN
* pandemonium
* polarisR
* RCTrep
* rstanarm
* semdrw
* shotGroups
* sphereML
* spinifex
* SurprisalAnalysis
* TestAnaAPP

30
revdep/README.md
View File

@@ -1,47 +1,45 @@
# Revdeps
## Failed to check (28)
## Failed to check (38)
|package |version |error |warning |note |
|:--------------------|:-------|:-----|:-------|:----|
|ADAMgui |? | | | |
|AssumpSure |? | | | |
|boinet |1.5.0 |1 | | |
|brms |? | | | |
|cheem |? | | | |
|ctsem |3.10.4 |1 | |1 |
|detourr |? | | | |
|EMMAgeo |? | | | |
|FactEff |? | | | |
|FAfA |? | | | |
|fio |0.1.6 |1 | | |
|fitteR |? | | | |
|FossilSimShiny |? | | | |
|GDINA |? | | | |
|ggsem |? | | | |
|grandR |? | | | |
|GSVA |? | | | |
|hbsaems |0.1.1 |1 | | |
|hbsaems |? | | | |
|langevitour |? | | | |
|lavaan.shiny |? | | | |
|lcsm |? | | | |
|linkspotter |1.3.0 |1 | | |
|linkspotter |? | | | |
|loon.shiny |? | | | |
|MOsemiind |0.1.0 |1 | | |
|MVN |6.2 |1 | | |
|MVN |? | | | |
|pandemonium |? | | | |
|polarisR |? | | | |
|Prostar |? | | | |
|RCTrep |1.2.0 |1 | | |
|recmap |? | | | |
|rstanarm |2.32.2 |1 | | |
|semdrw |? | | | |
|shotGroups |? | | | |
|sphereML |? | | | |
|spinifex |? | | | |
|StatTeacherAssistant |? | | | |
|SurprisalAnalysis |? | | | |
|TestAnaAPP |? | | | |
## New problems (7)
|package |version |error |warning |note |
|:---------------|:-------|:------|:-------|:--------|
|[biodosetools](problems.md#biodosetools)|3.7.1 |__+1__ | | |
|[inshiny](problems.md#inshiny)|0.1.0 |__+3__ | | |
|[omicsTools](problems.md#omicstools)|1.0.5 |__+1__ | | |
|[shinyGovstyle](problems.md#shinygovstyle)|0.1.0 |__+1__ | | |
|[ShinyLink](problems.md#shinylink)|0.2.2 |__+1__ | | |
|[shinySbm](problems.md#shinysbm)|0.1.5 |__+1__ | |1 |
|[SouthParkRshiny](problems.md#southparkrshiny)|1.0.0 | | |1 __+1__ |

42
revdep/cran.md
View File

@@ -1,58 +1,42 @@
## revdepcheck results
We checked 1395 reverse dependencies (1388 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
We checked 1383 reverse dependencies (1376 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
* We saw 7 new problems
* We failed to check 21 packages
* We saw 0 new problems
* We failed to check 31 packages
Issues with CRAN packages are summarised below.
### New problems
(This reports the first line of each new failure)
* biodosetools
checking tests ... ERROR
* inshiny
checking examples ... ERROR
checking tests ... ERROR
checking re-building of vignette outputs ... ERROR
* omicsTools
checking tests ... ERROR
* shinyGovstyle
checking tests ... ERROR
* ShinyLink
checking tests ... ERROR
* shinySbm
checking tests ... ERROR
* SouthParkRshiny
checking installed package size ... NOTE
### Failed to check
* AssumpSure (NA)
* boinet (NA)
* brms (NA)
* cheem (NA)
* ctsem (NA)
* detourr (NA)
* FAfA (NA)
* fio (NA)
* fitteR (NA)
* FossilSimShiny (NA)
* GDINA (NA)
* ggsem (NA)
* grandR (NA)
* hbsaems (NA)
* langevitour (NA)
* lavaan.shiny (NA)
* lcsm (NA)
* linkspotter (NA)
* loon.shiny (NA)
* MOsemiind (NA)
* MVN (NA)
* pandemonium (NA)
* polarisR (NA)
* RCTrep (NA)
* rstanarm (NA)
* semdrw (NA)
* shotGroups (NA)
* sphereML (NA)
* spinifex (NA)
* SurprisalAnalysis (NA)
* TestAnaAPP (NA)

354
revdep/problems.md
View File

@@ -1,353 +1 @@
# biodosetools
<details>
* Version: 3.7.1
* GitHub: https://github.com/biodosetools-team/biodosetools
* Source code: https://github.com/cran/biodosetools
* Date/Publication: 2025-10-22 08:10:02 UTC
* Number of recursive dependencies: 132
Run `revdepcheck::cloud_details(, "biodosetools")` for more info
</details>
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biodosetools)
Loading required package: shiny
Loading required package: golem
>
> test_check("biodosetools")
! Problem with `glm()` -> constraint ML optimization will be used instead
...
- "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">"
- " <span class=\"action-label\">go</span>"
- "</button>"
+ "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>"
[ FAIL 2 | WARN 1 | SKIP 1 | PASS 455 ]
Error:
! Test failures.
Execution halted
```
# inshiny
<details>
* Version: 0.1.0
* GitHub: https://github.com/nicholasdavies/inshiny
* Source code: https://github.com/cran/inshiny
* Date/Publication: 2025-09-09 14:00:13 UTC
* Number of recursive dependencies: 53
Run `revdepcheck::cloud_details(, "inshiny")` for more info
</details>
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘inshiny-Ex.R’ failed
The error most likely occurred in:
> ### Name: inline_button
> ### Title: Inline action button
> ### Aliases: inline_button
>
> ### ** Examples
>
> ui <- bslib::page_fixed(
...
+ label = shiny::span(style = "font-style:italic", "button"),
+ icon = shiny::icon("play"),
+ meaning = "Update button", accent = "success"),
+ "."
+ )
+ )
Error in check_tags(widget, shiny::tags$button(), "shiny::actionButton()") :
Unexpected tag structure from shiny::actionButton(). Please contact the package maintainer.
Calls: <Anonymous> ... div -> dots_list -> inline -> inline_button -> check_tags
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
▆
1. ├─inshiny:::cc(...)
2. │ └─base::cat(as.character(x)) at ./helper.R:2:5
3. └─inshiny::inline_button(...)
4. └─inshiny:::check_tags(widget, shiny::tags$button(), "shiny::actionButton()")
[ FAIL 2 | WARN 0 | SKIP 9 | PASS 24 ]
Error:
! Test failures.
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘inshiny.Rmd’ using rmarkdown
Quitting from inshiny.Rmd:64-86 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `check_tags()`:
! Unexpected tag structure from shiny::actionButton(). Please contact the package maintainer.
---
Backtrace:
...
Error: processing vignette 'inshiny.Rmd' failed with diagnostics:
Unexpected tag structure from shiny::actionButton(). Please contact the package maintainer.
--- failed re-building ‘inshiny.Rmd’
SUMMARY: processing the following file failed:
‘inshiny.Rmd’
Error: Vignette re-building failed.
Execution halted
```
# omicsTools
<details>
* Version: 1.0.5
* GitHub: https://github.com/YaoxiangLi/omicsTools
* Source code: https://github.com/cran/omicsTools
* Date/Publication: 2023-07-03 16:20:02 UTC
* Number of recursive dependencies: 88
Run `revdepcheck::cloud_details(, "omicsTools")` for more info
</details>
## Newly broken
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
- "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">"
- " <span class=\"action-label\">go</span>"
- "</button>"
+ "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>"
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 94 ]
Error:
! Test failures.
Execution halted
```
# shinyGovstyle
<details>
* Version: 0.1.0
* GitHub: https://github.com/moj-analytical-services/shinyGovstyle
* Source code: https://github.com/cran/shinyGovstyle
* Date/Publication: 2024-09-12 14:40:02 UTC
* Number of recursive dependencies: 49
Run `revdepcheck::cloud_details(, "shinyGovstyle")` for more info
</details>
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(shinyGovstyle)
>
> test_check("shinyGovstyle")
Saving _problems/test-backlink_Input-7.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 125 ]
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-backlink_Input.R:4:3'): backlink works ───────────────────────
Expected `backlink_check$children[[1]][[2]]` to be identical to "Back".
Differences:
target is NULL, current is character
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 125 ]
Error:
! Test failures.
Execution halted
```
# ShinyLink
<details>
* Version: 0.2.2
* GitHub: NA
* Source code: https://github.com/cran/ShinyLink
* Date/Publication: 2023-01-18 11:40:05 UTC
* Number of recursive dependencies: 128
Run `revdepcheck::cloud_details(, "ShinyLink")` for more info
</details>
## Newly broken
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
- "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">"
- " <span class=\"action-label\">go</span>"
- "</button>"
+ "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>"
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 145 ]
Error:
! Test failures.
Execution halted
```
# shinySbm
<details>
* Version: 0.1.5
* GitHub: https://github.com/Jo-Theo/shinySbm
* Source code: https://github.com/cran/shinySbm
* Date/Publication: 2023-09-07 21:50:02 UTC
* Number of recursive dependencies: 134
Run `revdepcheck::cloud_details(, "shinySbm")` for more info
</details>
## Newly broken
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
- "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">"
- " <span class=\"action-label\">go</span>"
- "</button>"
+ "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>"
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 141 ]
Error:
! Test failures.
Execution halted
```
## In both
* checking Rd files ... NOTE
```
checkRd: (-1) FungusTreeNetwork.Rd:15-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:22-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:33: Lost braces; missing escapes or markup?
33 | \item{tree_tree}{Results of \code{estimateSimpleSBM} for {sbm}
| ^
checkRd: (-1) FungusTreeNetwork.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:35: Lost braces; missing escapes or markup?
35 | \item{fungus_tree}{Results of \code{estimateBipartiteSBM} for {sbm}
| ^
...
checkRd: (-1) visSbm.default.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:51: Lost braces in \itemize; meant \describe ?
```
# SouthParkRshiny
<details>
* Version: 1.0.0
* GitHub: https://github.com/Amalan-ConStat/SouthParkRshiny
* Source code: https://github.com/cran/SouthParkRshiny
* Date/Publication: 2024-03-09 11:10:08 UTC
* Number of recursive dependencies: 112
Run `revdepcheck::cloud_details(, "SouthParkRshiny")` for more info
</details>
## Newly broken
* checking installed package size ... NOTE
```
installed size is 8.6Mb
sub-directories of 1Mb or more:
data 8.0Mb
```
## In both
* checking data for non-ASCII characters ... NOTE
```
Note: found 1562 marked UTF-8 strings
```
*Wow, no problems at all. :)*