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* Remove deprecated reactive* functions * Remove deprecated code * Update NEWS * Remove extractStackTrace and formatStackTrace * remove responsive from bootstrapPage() wrappers * Move extractStackTrace() to tests so they pass * Don't force suggested pkgs in devel on GHA Co-authored-by: Carson <cpsievert1@gmail.com>
921 lines
32 KiB
R
921 lines
32 KiB
R
utils::globalVariables('func', add = TRUE)
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#' Mark a function as a render function
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#'
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#' Should be called by implementers of `renderXXX` functions in order to mark
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#' their return values as Shiny render functions, and to provide a hint to Shiny
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#' regarding what UI function is most commonly used with this type of render
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#' function. This can be used in R Markdown documents to create complete output
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#' widgets out of just the render function.
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#'
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#' @param uiFunc A function that renders Shiny UI. Must take a single argument:
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#' an output ID.
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#' @param renderFunc A function that is suitable for assigning to a Shiny output
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#' slot.
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#' @param outputArgs A list of arguments to pass to the `uiFunc`. Render
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#' functions should include `outputArgs = list()` in their own parameter list,
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#' and pass through the value to `markRenderFunction`, to allow app authors to
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#' customize outputs. (Currently, this is only supported for dynamically
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#' generated UIs, such as those created by Shiny code snippets embedded in R
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#' Markdown documents).
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#' @param cacheHint One of `"auto"`, `FALSE`, or some other information to
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#' identify this instance for caching using [bindCache()]. If `"auto"`, it
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#' will try to automatically infer caching information. If `FALSE`, do not
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#' allow caching for the object. Some render functions (such as [renderPlot])
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#' contain internal state that makes them unsuitable for caching.
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#' @param cacheWriteHook Used if the render function is passed to `bindCache()`.
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#' This is an optional callback function to invoke before saving the value
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#' from the render function to the cache. This function must accept one
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#' argument, the value returned from `renderFunc`, and should return the value
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#' to store in the cache.
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#' @param cacheReadHook Used if the render function is passed to `bindCache()`.
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#' This is an optional callback function to invoke after reading a value from
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#' the cache (if there is a cache hit). The function will be passed one
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#' argument, the value retrieved from the cache. This can be useful when some
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#' side effect needs to occur for a render function to behave correctly. For
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#' example, some render functions call [createWebDependency()] so that Shiny
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#' is able to serve JS and CSS resources.
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#' @return The `renderFunc` function, with annotations.
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#'
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#' @seealso [createRenderFunction()], [quoToFunction()]
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#' @export
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markRenderFunction <- function(
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uiFunc,
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renderFunc,
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outputArgs = list(),
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cacheHint = "auto",
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cacheWriteHook = NULL,
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cacheReadHook = NULL
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) {
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force(renderFunc)
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# a mutable object that keeps track of whether `useRenderFunction` has been
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# executed (this usually only happens when rendering Shiny code snippets in
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# an interactive R Markdown document); its initial value is FALSE
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hasExecuted <- Mutable$new()
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hasExecuted$set(FALSE)
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if (is.null(uiFunc)) {
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uiFunc <- function(id) {
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pre(
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"No UI/output function provided for render function. ",
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"Please see ?shiny::markRenderFunction and ?shiny::createRenderFunction."
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)
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}
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}
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if (identical(cacheHint, "auto")) {
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origUserFunc <- attr(renderFunc, "wrappedFunc", exact = TRUE)
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# The result could be NULL, but don't warn now because it'll only affect
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# users if they try to use caching. We'll warn when someone calls
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# bindCache() on this object.
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if (is.null(origUserFunc)) {
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cacheHint <- NULL
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} else {
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# Add in the wrapper render function and they output function, because
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# they can be useful for distinguishing two renderX functions that receive
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# the same user expression but do different things with them (like
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# renderText and renderPrint).
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cacheHint <- list(
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origUserFunc = origUserFunc,
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renderFunc = renderFunc,
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outputFunc = uiFunc
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)
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}
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}
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if (!is.null(cacheHint) && !is_false(cacheHint)) {
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if (!is.list(cacheHint)) {
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cacheHint <- list(cacheHint)
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}
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# For functions, remove the env and source refs because they can cause
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# spurious differences.
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# For expressions, remove source refs.
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# For everything else, do nothing.
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cacheHint <- lapply(cacheHint, function(x) {
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if (is.function(x)) formalsAndBody(x)
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else if (is.language(x)) zap_srcref(x)
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else x
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})
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}
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wrappedRenderFunc <- function(...) {
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# if the user provided something through `outputArgs` BUT the
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# `useRenderFunction` was not executed, then outputArgs will be ignored,
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# so throw a warning to let user know the correct usage
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if (length(outputArgs) != 0 && !hasExecuted$get()) {
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warning("Unused argument: outputArgs. The argument outputArgs is only ",
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"meant to be used when embedding snippets of Shiny code in an ",
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"R Markdown code chunk (using runtime: shiny). When running a ",
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"full Shiny app, please set the output arguments directly in ",
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"the corresponding output function of your UI code.")
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# stop warning from happening again for the same object
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hasExecuted$set(TRUE)
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}
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if (is.null(formals(renderFunc))) renderFunc()
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else renderFunc(...)
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}
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structure(
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wrappedRenderFunc,
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class = c("shiny.render.function", "function"),
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outputFunc = uiFunc,
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outputArgs = outputArgs,
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hasExecuted = hasExecuted,
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cacheHint = cacheHint,
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cacheWriteHook = cacheWriteHook,
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cacheReadHook = cacheReadHook
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)
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}
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#' @export
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print.shiny.render.function <- function(x, ...) {
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cat_line("<shiny.render.function>")
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}
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#' Implement render functions
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#'
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#' This function is a wrapper for [markRenderFunction()] which provides support
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#' for async computation via promises.
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#'
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#' @param func A function without parameters, that returns user data. If the
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#' returned value is a promise, then the render function will proceed in async
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#' mode.
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#' @param transform A function that takes four arguments: `value`,
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#' `session`, `name`, and `...` (for future-proofing). This
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#' function will be invoked each time a value is returned from `func`,
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#' and is responsible for changing the value into a JSON-ready value to be
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#' JSON-encoded and sent to the browser.
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#' @param outputFunc The UI function that is used (or most commonly used) with
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#' this render function. This can be used in R Markdown documents to create
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#' complete output widgets out of just the render function.
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#' @inheritParams markRenderFunction
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#' @return An annotated render function, ready to be assigned to an
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#' `output` slot.
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#'
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#' @seealso [quoToFunction()], [markRenderFunction()].
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#'
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#' @examples
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#' # A very simple render function
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#' renderTriple <- function(x) {
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#' x <- substitute(x)
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#' if (!rlang::is_quosure(x)) {
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#' x <- rlang::new_quosure(x, env = parent.frame())
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#' }
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#' func <- quoToFunction(x, "renderTriple")
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#'
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#' createRenderFunction(
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#' func,
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#' transform = function(value, session, name, ...) {
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#' paste(rep(value, 3), collapse=", ")
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#' },
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#' outputFunc = textOutput
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#' )
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#' }
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#'
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#' # Test render function from the console
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#' a <- 1
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#' r <- renderTriple({ a + 1 })
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#' a <- 2
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#' r()
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#' @export
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createRenderFunction <- function(
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func,
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transform = function(value, session, name, ...) value,
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outputFunc = NULL,
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outputArgs = NULL,
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cacheHint = "auto",
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cacheWriteHook = NULL,
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cacheReadHook = NULL
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) {
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renderFunc <- function(shinysession, name, ...) {
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hybrid_chain(
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func(),
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function(value) {
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transform(value, shinysession, name, ...)
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}
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)
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}
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# Hoist func's wrappedFunc attribute into renderFunc, so that when we pass
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# renderFunc on to markRenderFunction, it is able to find the original user
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# function.
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if (identical(cacheHint, "auto")) {
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attr(renderFunc, "wrappedFunc") <- attr(func, "wrappedFunc", exact = TRUE)
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}
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markRenderFunction(outputFunc, renderFunc, outputArgs, cacheHint,
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cacheWriteHook, cacheReadHook)
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}
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useRenderFunction <- function(renderFunc, inline = FALSE) {
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outputFunction <- attr(renderFunc, "outputFunc")
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outputArgs <- attr(renderFunc, "outputArgs")
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hasExecuted <- attr(renderFunc, "hasExecuted")
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hasExecuted$set(TRUE)
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for (arg in names(outputArgs)) {
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if (!arg %in% names(formals(outputFunction))) {
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stop(paste0("Unused argument: in 'outputArgs', '",
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arg, "' is not an valid argument for ",
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"the output function"))
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outputArgs[[arg]] <- NULL
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}
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}
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id <- createUniqueId(8, "out")
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o <- getDefaultReactiveDomain()$output
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if (!is.null(o)) {
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o[[id]] <- renderFunc
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# If there's a namespace, we must respect it
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id <- getDefaultReactiveDomain()$ns(id)
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}
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# Make the id the first positional argument
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outputArgs <- c(list(id), outputArgs)
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if (is.logical(formals(outputFunction)[["inline"]]) && !("inline" %in% names(outputArgs))) {
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outputArgs[["inline"]] <- inline
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}
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do.call(outputFunction, outputArgs)
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}
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#' @export
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#' @method as.tags shiny.render.function
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as.tags.shiny.render.function <- function(x, ..., inline = FALSE) {
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useRenderFunction(x, inline = inline)
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}
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# Get relevant attributes from a render function object.
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renderFunctionAttributes <- function(x) {
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attrs <- c("outputFunc", "outputArgs", "hasExecuted", "cacheHint")
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names(attrs) <- attrs
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lapply(attrs, function(name) attr(x, name, exact = TRUE))
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}
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# Add a named list of attributes to an object
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addAttributes <- function(x, attrs) {
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nms <- names(attrs)
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for (i in seq_along(attrs)) {
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attr(x, nms[i]) <- attrs[[i]]
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}
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x
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}
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#' Mark a render function with attributes that will be used by the output
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#'
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#' @inheritParams markRenderFunction
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#' @param snapshotExclude If TRUE, exclude the output from test snapshots.
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#' @param snapshotPreprocess A function for preprocessing the value before
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#' taking a test snapshot.
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#'
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#' @keywords internal
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markOutputAttrs <- function(renderFunc, snapshotExclude = NULL,
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snapshotPreprocess = NULL)
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{
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# Add the outputAttrs attribute if necessary
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if (is.null(attr(renderFunc, "outputAttrs", TRUE))) {
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attr(renderFunc, "outputAttrs") <- list()
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}
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if (!is.null(snapshotExclude)) {
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attr(renderFunc, "outputAttrs")$snapshotExclude <- snapshotExclude
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}
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if (!is.null(snapshotPreprocess)) {
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attr(renderFunc, "outputAttrs")$snapshotPreprocess <- snapshotPreprocess
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}
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renderFunc
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}
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#' Image file output
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#'
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#' Renders a reactive image that is suitable for assigning to an `output`
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#' slot.
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#'
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#' The expression `expr` must return a list containing the attributes for
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#' the `img` object on the client web page. For the image to display,
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#' properly, the list must have at least one entry, `src`, which is the
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#' path to the image file. It may also useful to have a `contentType`
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#' entry specifying the MIME type of the image. If one is not provided,
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#' `renderImage` will try to autodetect the type, based on the file
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#' extension.
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#'
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#' Other elements such as `width`, `height`, `class`, and
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#' `alt`, can also be added to the list, and they will be used as
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#' attributes in the `img` object.
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#'
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#' The corresponding HTML output tag should be `div` or `img` and have
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#' the CSS class name `shiny-image-output`.
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#'
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#' @seealso For more details on how the images are generated, and how to control
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#' the output, see [plotPNG()].
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#'
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#' @param expr An expression that returns a list.
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#' @param env The environment in which to evaluate `expr`.
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#' @param quoted Is `expr` a quoted expression (with `quote()`)? This
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#' is useful if you want to save an expression in a variable.
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#' @param deleteFile Should the file in `func()$src` be deleted after
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#' it is sent to the client browser? Generally speaking, if the image is a
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#' temp file generated within `func`, then this should be `TRUE`;
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#' if the image is not a temp file, this should be `FALSE`. (For backward
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#' compatibility reasons, if this argument is missing, a warning will be
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#' emitted, and if the file is in the temp directory it will be deleted. In
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#' the future, this warning will become an error.)
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#' @param outputArgs A list of arguments to be passed through to the implicit
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#' call to [imageOutput()] when `renderImage` is used in an
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#' interactive R Markdown document.
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#' @export
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#'
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#' @examples
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#' ## Only run examples in interactive R sessions
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#' if (interactive()) {
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#' options(device.ask.default = FALSE)
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#'
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#' ui <- fluidPage(
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#' sliderInput("n", "Number of observations", 2, 1000, 500),
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#' plotOutput("plot1"),
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#' plotOutput("plot2"),
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#' plotOutput("plot3")
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#' )
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#'
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#' server <- function(input, output, session) {
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#'
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#' # A plot of fixed size
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#' output$plot1 <- renderImage({
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#' # A temp file to save the output. It will be deleted after renderImage
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#' # sends it, because deleteFile=TRUE.
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#' outfile <- tempfile(fileext='.png')
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#'
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#' # Generate a png
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#' png(outfile, width=400, height=400)
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#' hist(rnorm(input$n))
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#' dev.off()
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#'
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#' # Return a list
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#' list(src = outfile,
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#' alt = "This is alternate text")
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#' }, deleteFile = TRUE)
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#'
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#' # A dynamically-sized plot
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#' output$plot2 <- renderImage({
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#' # Read plot2's width and height. These are reactive values, so this
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#' # expression will re-run whenever these values change.
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#' width <- session$clientData$output_plot2_width
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#' height <- session$clientData$output_plot2_height
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#'
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#' # A temp file to save the output.
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#' outfile <- tempfile(fileext='.png')
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#'
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#' png(outfile, width=width, height=height)
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#' hist(rnorm(input$n))
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#' dev.off()
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#'
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#' # Return a list containing the filename
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#' list(src = outfile,
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#' width = width,
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#' height = height,
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#' alt = "This is alternate text")
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#' }, deleteFile = TRUE)
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#'
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#' # Send a pre-rendered image, and don't delete the image after sending it
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#' # NOTE: For this example to work, it would require files in a subdirectory
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#' # named images/
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#' output$plot3 <- renderImage({
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#' # When input$n is 1, filename is ./images/image1.jpeg
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#' filename <- normalizePath(file.path('./images',
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#' paste('image', input$n, '.jpeg', sep='')))
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#'
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#' # Return a list containing the filename
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#' list(src = filename)
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#' }, deleteFile = FALSE)
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#' }
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#'
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#' shinyApp(ui, server)
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#' }
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renderImage <- function(expr, env=parent.frame(), quoted=FALSE,
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deleteFile, outputArgs=list())
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{
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expr <- get_quosure(expr, env, quoted)
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func <- quoToFunction(expr, "renderImage")
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# missing() must be used directly within the function with the given arg
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if (missing(deleteFile)) {
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deleteFile <- NULL
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}
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# Tracks whether we've reported the `deleteFile` warning yet; we don't want to
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# do it on every invalidation (though we will end up doing it at least once
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# per output per session).
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warned <- FALSE
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createRenderFunction(func,
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transform = function(imageinfo, session, name, ...) {
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shouldDelete <- deleteFile
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# jcheng 2020-05-08
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#
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# Until Shiny 1.5.0, the default for deleteFile was, incredibly, TRUE.
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# Changing it to default to FALSE might cause existing Shiny apps to pile
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# up images in their temp directory (for long lived R processes). Not
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# having a default (requiring explicit value) is the right long-term move,
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# but would break today's apps.
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#
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# Compromise we decided on was to eventually require TRUE/FALSE, but for
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# now, change the default behavior to only delete temp files; and emit a
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# warning encouraging people to not rely on the default.
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if (is.null(shouldDelete)) {
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shouldDelete <- isTRUE(try(silent = TRUE,
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file.exists(imageinfo$src) && isTemp(imageinfo$src, mustExist = TRUE)
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))
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if (!warned) {
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warned <<- TRUE
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warning("The renderImage output named '",
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getCurrentOutputInfo()$name,
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"' is missing the deleteFile argument; as of Shiny 1.5.0, you must ",
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"use deleteFile=TRUE or deleteFile=FALSE. (This warning will ",
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"become an error in a future version of Shiny.)",
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call. = FALSE
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)
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}
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}
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if (shouldDelete) {
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on.exit(unlink(imageinfo$src), add = TRUE)
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}
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# If contentType not specified, autodetect based on extension
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contentType <- imageinfo$contentType %||% getContentType(imageinfo$src)
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# Extra values are everything in imageinfo except 'src' and 'contentType'
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extra_attr <- imageinfo[!names(imageinfo) %in% c('src', 'contentType')]
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# Return a list with src, and other img attributes
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c(src = session$fileUrl(name, file=imageinfo$src, contentType=contentType),
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extra_attr)
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},
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imageOutput,
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outputArgs,
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cacheHint = FALSE
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)
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}
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# TODO: If we ever take a dependency on fs, it'd be great to replace this with
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# fs::path_has_parent().
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isTemp <- function(path, tempDir = tempdir(), mustExist) {
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if (!isTRUE(mustExist)) {
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# jcheng 2020-05-11: I added mustExist just to make it totally obvious that
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# the path must exist. We don't support the case where the file doesn't
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# exist because it makes normalizePath unusable, and it's a bit scary
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# security-wise to compare paths without normalization. Using fs would fix
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# this as it knows how to normalize paths that don't exist.
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stop("isTemp(mustExist=FALSE) is not implemented")
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}
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if (mustExist && !file.exists(path)) {
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stop("path does not exist")
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}
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if (nchar(tempDir) == 0 || !dir.exists(tempDir)) {
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# This should never happen, but just to be super paranoid...
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stop("invalid temp dir")
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}
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path <- normalizePath(path, winslash = "/", mustWork = mustExist)
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|
|
tempDir <- normalizePath(tempDir, winslash = "/", mustWork = TRUE)
|
|
if (path == tempDir) {
|
|
return(FALSE)
|
|
}
|
|
|
|
tempDir <- ensure_trailing_slash(tempDir)
|
|
if (path == tempDir) {
|
|
return(FALSE)
|
|
}
|
|
|
|
return(substr(path, 1, nchar(tempDir)) == tempDir)
|
|
}
|
|
|
|
#' Text Output
|
|
#'
|
|
#' @description
|
|
#' `renderPrint()` prints the result of `expr`, while `renderText()` pastes it
|
|
#' together into a single string. `renderPrint()` is equivalent to [print()];
|
|
#' `renderText()` is equivalent to [cat()]. Both functions capture all other
|
|
#' printed output generated while evaluating `expr`.
|
|
#'
|
|
#' `renderPrint()` is usually paired with [verbatimTextOutput()];
|
|
#' `renderText()` is usually paired with [textOutput()].
|
|
#'
|
|
#' @details
|
|
#' The corresponding HTML output tag can be anything (though `pre` is
|
|
#' recommended if you need a monospace font and whitespace preserved) and should
|
|
#' have the CSS class name `shiny-text-output`.
|
|
#'
|
|
#' @return
|
|
#' For `renderPrint()`, note the given expression returns `NULL` then `NULL`
|
|
#' will actually be visible in the output. To display nothing, make your
|
|
#' function return [invisible()].
|
|
#'
|
|
#' @param expr An expression to evaluate.
|
|
#' @param env The environment in which to evaluate `expr`. For expert use only.
|
|
#' @param quoted Is `expr` a quoted expression (with `quote()`)? This
|
|
#' is useful if you want to save an expression in a variable.
|
|
#' @param width Width of printed output.
|
|
#' @param outputArgs A list of arguments to be passed through to the implicit
|
|
#' call to [verbatimTextOutput()] or [textOutput()] when the functions are
|
|
#' used in an interactive RMarkdown document.
|
|
#'
|
|
#' @example res/text-example.R
|
|
#' @export
|
|
renderPrint <- function(expr, env = parent.frame(), quoted = FALSE,
|
|
width = getOption('width'), outputArgs=list())
|
|
{
|
|
expr <- get_quosure(expr, env, quoted)
|
|
func <- quoToFunction(expr, "renderPrint")
|
|
|
|
# Set a promise domain that sets the console width
|
|
# and captures output
|
|
# op <- options(width = width)
|
|
# on.exit(options(op), add = TRUE)
|
|
|
|
renderFunc <- function(shinysession, name, ...) {
|
|
domain <- createRenderPrintPromiseDomain(width)
|
|
hybrid_chain(
|
|
{
|
|
promises::with_promise_domain(domain, func())
|
|
},
|
|
function(value) {
|
|
res <- withVisible(value)
|
|
if (res$visible) {
|
|
cat(file = domain$conn, paste(utils::capture.output(res$value, append = TRUE), collapse = "\n"))
|
|
}
|
|
paste(readLines(domain$conn, warn = FALSE), collapse = "\n")
|
|
},
|
|
finally = function() {
|
|
close(domain$conn)
|
|
}
|
|
)
|
|
}
|
|
|
|
markRenderFunction(
|
|
verbatimTextOutput,
|
|
renderFunc,
|
|
outputArgs,
|
|
cacheHint = list(
|
|
label = "renderPrint",
|
|
origUserExpr = get_expr(expr)
|
|
)
|
|
)
|
|
}
|
|
|
|
createRenderPrintPromiseDomain <- function(width) {
|
|
f <- file()
|
|
|
|
promises::new_promise_domain(
|
|
wrapOnFulfilled = function(onFulfilled) {
|
|
force(onFulfilled)
|
|
function(...) {
|
|
op <- options(width = width)
|
|
on.exit(options(op), add = TRUE)
|
|
|
|
sink(f, append = TRUE)
|
|
on.exit(sink(NULL), add = TRUE)
|
|
|
|
onFulfilled(...)
|
|
}
|
|
},
|
|
wrapOnRejected = function(onRejected) {
|
|
force(onRejected)
|
|
function(...) {
|
|
op <- options(width = width)
|
|
on.exit(options(op), add = TRUE)
|
|
|
|
sink(f, append = TRUE)
|
|
on.exit(sink(NULL), add = TRUE)
|
|
|
|
onRejected(...)
|
|
}
|
|
},
|
|
wrapSync = function(expr) {
|
|
op <- options(width = width)
|
|
on.exit(options(op), add = TRUE)
|
|
|
|
sink(f, append = TRUE)
|
|
on.exit(sink(NULL), add = TRUE)
|
|
|
|
force(expr)
|
|
},
|
|
conn = f
|
|
)
|
|
}
|
|
|
|
#' @param sep A separator passed to `cat` to be appended after each
|
|
#' element.
|
|
#' @export
|
|
#' @rdname renderPrint
|
|
renderText <- function(expr, env=parent.frame(), quoted=FALSE,
|
|
outputArgs=list(), sep=" ") {
|
|
|
|
expr <- get_quosure(expr, env, quoted)
|
|
func <- quoToFunction(expr, "renderText")
|
|
|
|
createRenderFunction(
|
|
func,
|
|
function(value, session, name, ...) {
|
|
paste(utils::capture.output(cat(value, sep=sep)), collapse="\n")
|
|
},
|
|
textOutput,
|
|
outputArgs
|
|
)
|
|
}
|
|
|
|
#' UI Output
|
|
#'
|
|
#' Renders reactive HTML using the Shiny UI library.
|
|
#'
|
|
#' The corresponding HTML output tag should be `div` and have the CSS class
|
|
#' name `shiny-html-output` (or use [uiOutput()]).
|
|
#'
|
|
#' @param expr An expression that returns a Shiny tag object, [HTML()],
|
|
#' or a list of such objects.
|
|
#' @param env The environment in which to evaluate `expr`.
|
|
#' @param quoted Is `expr` a quoted expression (with `quote()`)? This
|
|
#' is useful if you want to save an expression in a variable.
|
|
#' @param outputArgs A list of arguments to be passed through to the implicit
|
|
#' call to [uiOutput()] when `renderUI` is used in an
|
|
#' interactive R Markdown document.
|
|
#'
|
|
#' @seealso [uiOutput()]
|
|
#' @export
|
|
#' @examples
|
|
#' ## Only run examples in interactive R sessions
|
|
#' if (interactive()) {
|
|
#'
|
|
#' ui <- fluidPage(
|
|
#' uiOutput("moreControls")
|
|
#' )
|
|
#'
|
|
#' server <- function(input, output) {
|
|
#' output$moreControls <- renderUI({
|
|
#' tagList(
|
|
#' sliderInput("n", "N", 1, 1000, 500),
|
|
#' textInput("label", "Label")
|
|
#' )
|
|
#' })
|
|
#' }
|
|
#' shinyApp(ui, server)
|
|
#' }
|
|
#'
|
|
renderUI <- function(expr, env = parent.frame(), quoted = FALSE,
|
|
outputArgs = list())
|
|
{
|
|
expr <- get_quosure(expr, env, quoted)
|
|
func <- quoToFunction(expr, "renderUI")
|
|
|
|
createRenderFunction(
|
|
func,
|
|
function(result, shinysession, name, ...) {
|
|
if (is.null(result) || length(result) == 0)
|
|
return(NULL)
|
|
|
|
processDeps(result, shinysession)
|
|
},
|
|
uiOutput,
|
|
outputArgs
|
|
)
|
|
}
|
|
|
|
#' File Downloads
|
|
#'
|
|
#' Allows content from the Shiny application to be made available to the user as
|
|
#' file downloads (for example, downloading the currently visible data as a CSV
|
|
#' file). Both filename and contents can be calculated dynamically at the time
|
|
#' the user initiates the download. Assign the return value to a slot on
|
|
#' `output` in your server function, and in the UI use
|
|
#' [downloadButton()] or [downloadLink()] to make the
|
|
#' download available.
|
|
#'
|
|
#' @param filename A string of the filename, including extension, that the
|
|
#' user's web browser should default to when downloading the file; or a
|
|
#' function that returns such a string. (Reactive values and functions may be
|
|
#' used from this function.)
|
|
#' @param content A function that takes a single argument `file` that is a
|
|
#' file path (string) of a nonexistent temp file, and writes the content to
|
|
#' that file path. (Reactive values and functions may be used from this
|
|
#' function.)
|
|
#' @param contentType A string of the download's
|
|
#' [content type](https://en.wikipedia.org/wiki/Internet_media_type), for
|
|
#' example `"text/csv"` or `"image/png"`. If `NULL` or
|
|
#' `NA`, the content type will be guessed based on the filename
|
|
#' extension, or `application/octet-stream` if the extension is unknown.
|
|
#' @param outputArgs A list of arguments to be passed through to the implicit
|
|
#' call to [downloadButton()] when `downloadHandler` is used
|
|
#' in an interactive R Markdown document.
|
|
#'
|
|
#' @examples
|
|
#' ## Only run examples in interactive R sessions
|
|
#' if (interactive()) {
|
|
#'
|
|
#' ui <- fluidPage(
|
|
#' downloadButton("downloadData", "Download")
|
|
#' )
|
|
#'
|
|
#' server <- function(input, output) {
|
|
#' # Our dataset
|
|
#' data <- mtcars
|
|
#'
|
|
#' output$downloadData <- downloadHandler(
|
|
#' filename = function() {
|
|
#' paste("data-", Sys.Date(), ".csv", sep="")
|
|
#' },
|
|
#' content = function(file) {
|
|
#' write.csv(data, file)
|
|
#' }
|
|
#' )
|
|
#' }
|
|
#'
|
|
#' shinyApp(ui, server)
|
|
#' }
|
|
#' @export
|
|
downloadHandler <- function(filename, content, contentType=NA, outputArgs=list()) {
|
|
renderFunc <- function(shinysession, name, ...) {
|
|
shinysession$registerDownload(name, filename, contentType, content)
|
|
}
|
|
snapshotExclude(
|
|
markRenderFunction(downloadButton, renderFunc, outputArgs, cacheHint = FALSE)
|
|
)
|
|
}
|
|
|
|
#' Table output with the JavaScript DataTables library
|
|
#'
|
|
#' @description
|
|
#' Makes a reactive version of the given function that returns a data frame (or
|
|
#' matrix), which will be rendered with the [DataTables](https://datatables.net)
|
|
#' library. Paging, searching, filtering, and sorting can be done on the R side
|
|
#' using Shiny as the server infrastructure.
|
|
#'
|
|
#' This function only provides the server-side version of DataTables (using R
|
|
#' to process the data object on the server side). There is a separate
|
|
#' [DT](https://github.com/rstudio/DT) that allows you to create both
|
|
#' server-side and client-side DataTables, and supports additional features.
|
|
#' Learn more at <https://rstudio.github.io/DT/shiny.html>.
|
|
#'
|
|
#' @param expr An expression that returns a data frame or a matrix.
|
|
#' @inheritParams renderTable
|
|
#' @param options A list of initialization options to be passed to DataTables,
|
|
#' or a function to return such a list. You can find a complete list of
|
|
#' options at <https://datatables.net/reference/option/>.
|
|
#'
|
|
#' Any top-level strings with class `"AsIs"` (as created by [I()]) will be
|
|
#' evaluated in JavaScript. This is useful when the type of the option value
|
|
#' is not supported in JSON, e.g., a JavaScript function, which can be
|
|
#' obtained by evaluating a character string. This only applies to the
|
|
#' root-level elements of options list, and does not worked for lower-level
|
|
#' elements in the list.
|
|
#' @param searchDelay The delay for searching, in milliseconds (to avoid too
|
|
#' frequent search requests).
|
|
#' @param callback A JavaScript function to be applied to the DataTable object.
|
|
#' This is useful for DataTables plug-ins, which often require the DataTable
|
|
#' instance to be available.
|
|
#' @param escape Whether to escape HTML entities in the table: `TRUE` means
|
|
#' to escape the whole table, and `FALSE` means not to escape it.
|
|
#' Alternatively, you can specify numeric column indices or column names to
|
|
#' indicate which columns to escape, e.g. `1:5` (the first 5 columns),
|
|
#' `c(1, 3, 4)`, or `c(-1, -3)` (all columns except the first and
|
|
#' third), or `c('Species', 'Sepal.Length')`.
|
|
#' @param outputArgs A list of arguments to be passed through to the implicit
|
|
#' call to `dataTableOutput()` when `renderDataTable()` is used
|
|
#' in an interactive R Markdown document.
|
|
#' @export
|
|
#' @inheritParams renderPlot
|
|
#' @examples
|
|
#' ## Only run this example in interactive R sessions
|
|
#' if (interactive()) {
|
|
#' # pass a callback function to DataTables using I()
|
|
#' shinyApp(
|
|
#' ui = fluidPage(
|
|
#' fluidRow(
|
|
#' column(12,
|
|
#' dataTableOutput('table')
|
|
#' )
|
|
#' )
|
|
#' ),
|
|
#' server = function(input, output) {
|
|
#' output$table <- renderDataTable(iris,
|
|
#' options = list(
|
|
#' pageLength = 5,
|
|
#' initComplete = I("function(settings, json) {alert('Done.');}")
|
|
#' )
|
|
#' )
|
|
#' }
|
|
#' )
|
|
#' }
|
|
renderDataTable <- function(expr, options = NULL, searchDelay = 500,
|
|
callback = 'function(oTable) {}', escape = TRUE,
|
|
env = parent.frame(), quoted = FALSE,
|
|
outputArgs=list())
|
|
{
|
|
|
|
if (in_devmode()) {
|
|
shinyDeprecated(
|
|
"0.11.1", "shiny::renderDataTable()", "DT::renderDataTable()",
|
|
details = "See <https://rstudio.github.io/DT/shiny.html> for more information"
|
|
)
|
|
}
|
|
|
|
expr <- get_quosure(expr, env, quoted)
|
|
func <- quoToFunction(expr, "renderDataTable")
|
|
|
|
renderFunc <- function(shinysession, name, ...) {
|
|
if (is.function(options)) options <- options()
|
|
options <- checkDT9(options)
|
|
res <- checkAsIs(options)
|
|
hybrid_chain(
|
|
func(),
|
|
function(data) {
|
|
if (length(dim(data)) != 2) return() # expects a rectangular data object
|
|
if (is.data.frame(data)) data <- as.data.frame(data)
|
|
action <- shinysession$registerDataObj(name, data, dataTablesJSON)
|
|
colnames <- colnames(data)
|
|
# if escape is column names, turn names to numeric indices
|
|
if (is.character(escape)) {
|
|
escape <- stats::setNames(seq_len(ncol(data)), colnames)[escape]
|
|
if (any(is.na(escape)))
|
|
stop("Some column names in the 'escape' argument not found in data")
|
|
}
|
|
colnames[escape] <- htmlEscape(colnames[escape])
|
|
if (!is.logical(escape)) {
|
|
if (!is.numeric(escape))
|
|
stop("'escape' must be TRUE, FALSE, or a numeric vector, or column names")
|
|
escape <- paste(escape, collapse = ',')
|
|
}
|
|
list(
|
|
colnames = colnames, action = action, options = res$options,
|
|
evalOptions = if (length(res$eval)) I(res$eval), searchDelay = searchDelay,
|
|
callback = paste(callback, collapse = '\n'), escape = escape
|
|
)
|
|
}
|
|
)
|
|
}
|
|
|
|
renderFunc <- markRenderFunction(dataTableOutput, renderFunc, outputArgs,
|
|
cacheHint = FALSE)
|
|
|
|
renderFunc <- snapshotPreprocessOutput(renderFunc, function(value) {
|
|
# Remove the action field so that it's not saved in test snapshots. It
|
|
# contains a value that changes every time an app is run, and shouldn't be
|
|
# stored for test snapshots. It will be something like:
|
|
# "session/e0d14d3fe97f672f9655a127f2a1e079/dataobj/table?w=&nonce=7f5d6d54e22450a3"
|
|
value$action <- NULL
|
|
value
|
|
})
|
|
|
|
renderFunc
|
|
}
|
|
|
|
# a data frame containing the DataTables 1.9 and 1.10 names
|
|
DT10Names <- function() {
|
|
rbind(
|
|
utils::read.table(
|
|
system.file('www/shared/datatables/upgrade1.10.txt', package = 'shiny'),
|
|
stringsAsFactors = FALSE
|
|
),
|
|
c('aoColumns', 'Removed') # looks like an omission on the upgrade guide
|
|
)
|
|
}
|
|
|
|
# check DataTables 1.9.x options, and give instructions for upgrading to 1.10.x
|
|
checkDT9 <- function(options) {
|
|
nms <- names(options)
|
|
if (length(nms) == 0L) return(options)
|
|
DT10 <- DT10Names()
|
|
# e.g. the top level option name for oLanguage.sSearch should be oLanguage
|
|
i <- nms %in% gsub('[.].*', '', DT10[, 1])
|
|
if (!any(i)) return(options) # did not see old option names, ready to go!
|
|
msg <- paste(
|
|
'shiny (>= 0.10.2) has upgraded DataTables from 1.9.4 to 1.10.2, ',
|
|
'and DataTables 1.10.x uses different parameter names with 1.9.x. ',
|
|
'Please follow the upgrade guide https://datatables.net/upgrade/1.10-convert',
|
|
' to change your DataTables parameter names:\n\n',
|
|
paste(utils::formatUL(nms[i]), collapse = '\n'), '\n', sep = ''
|
|
)
|
|
j <- gsub('[.].*', '', DT10[, 1]) %in% nms
|
|
# I cannot help you upgrade automatically in these cases, so I have to stop
|
|
if (any(grepl('[.]', DT10[j, 1])) || any(grepl('[.]', DT10[j, 2]))) stop(msg)
|
|
warning(msg)
|
|
nms10 <- DT10[match(nms[i], DT10[, 1]), 2]
|
|
if (any(nms10 == 'Removed')) stop(
|
|
"These parameters have been removed in DataTables 1.10.x:\n\n",
|
|
paste(utils::formatUL(nms[i][nms10 == 'Removed']), collapse = '\n'),
|
|
"\n\n", msg
|
|
)
|
|
names(options)[i] <- nms10
|
|
options
|
|
}
|