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455 lines
17 KiB
R
455 lines
17 KiB
R
#' Plot output with cached images
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#'
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#' Renders a reactive plot, with plot images cached to disk.
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#'
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#' \code{expr} is an expression that generates a plot, similar to that in
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#' \code{renderPlot}. Unlike with \code{renderPlot}, this expression does not
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#' take reactive dependencies. It is re-executed only when the cache key
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#' changes.
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#'
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#' \code{cacheKeyExpr} is an expression which, when evaluated, returns an object
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#' which will be serialized and hashed using the \code{\link[digest]{digest}}
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#' function to generate a string that will be used as a cache key. This key is
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#' used to identify the contents of the plot: if the cache key is the same as a
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#' previous time, it assumes that the plot is the same and can be retrieved from
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#' the cache.
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#'
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#' This \code{cacheKeyExpr} is reactive, and so it will be re-evaluated when any
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#' upstream reactives are invalidated. This will also trigger re-execution of
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#' the plotting expression, \code{expr}.
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#'
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#' The key should consist of "normal" R objects, like vectors and lists. Lists
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#' should in turn contain other normal R objects. If the key contains
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#' environments, external pointers, or reference objects -- or even if it has
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#' such objects attached as attributes -- then it is possible that it will
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#' change unpredictably even when you do not expect it to. Additionally, because
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#' the entire key is serialized and hashed, if it contains a very large object
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#' -- a large data set, for example -- there may be a noticeable performance
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#' penalty.
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#'
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#' If you face these issues with the cache key, you can work around them by
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#' extracting out the important parts of the objects, and/or by converting them
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#' to normal R objects before returning them. Your expression could even
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#' serialize and hash that information in an efficient way and return a string,
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#' which will in turn be hashed (very quickly) by the
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#' \code{\link[digest]{digest}} function.
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#'
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#'
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#' @section Cache scoping:
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#'
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#' There are a number of different ways you may want to scope the cache. For
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#' example, you may want each user session to have their own plot cache, or
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#' you may want each run of the application to have a cache (shared among
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#' possibly multiple simultaneous user sessions), or you may want to have a
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#' cache that persists even after the application is shut down and started
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#' again.
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#'
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#' To control the scope of the cache, use the \code{cache} parameter. There
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#' are two ways of having Shiny automatically create and clean up the disk
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#' cache.
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#'
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#' \describe{
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#' \item{1}{To scope the cache to one session, use \code{cache="session"}.
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#' When a new user session starts -- in other words, when a web browser
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#' visits the Shiny application -- a new cache will be created on disk
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#' for that session. When the session ends, the cache will be deleted.
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#' The cache will not be shared across multiple sessions.}
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#' \item{2}{To scope the cache to one run of a Shiny application (shared
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#' among possibly multiple user sessions), use \code{cache="app"}. This
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#' is the default. The cache will be shared across multiple sessions, so
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#' there is potentially a large performance benefit if there are many users
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#' of the application. If plots cannot be safely shared across users, this
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#' should not be used.}
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#' }
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#'
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#' If either \code{"session"} or \code{"app"} is used, the cache will be 5 MB
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#' in size, and will be stored stored in a temporary directory. Note that a
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#' single cache will be shared for all plots within a single application.
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#'
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#' In some cases, you may want to have finer-grained control over the caching
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#' behavior. For example, you may want to use a larger or smaller cache, or
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#' you may want the cache to persist across multiple runs of an application,
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#' or even across multiple R processes. To use this finer-grained control,
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#' pass a \code{\link{DiskCache}} object as the \code{cache} parameter.
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#'
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#' Here are some ways to create a cache with other behaviors:
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#'
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#' \describe{
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#' \item{3}{To have the cache persist across multiple runs of an R process,
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#' use \code{cache=DiskCache$new(dirname(tempdir()), "plot1_cache")}.
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#' This will create a subdirectory in your system temp directory named
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#' \code{plot1_cache} (replace \code{plot1_cache} with a unique name of
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#' your choosing). On most platforms, this directory will be removed when
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#' your system reboots.}
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#' \item{4}{To have the cache persist even across multiple reboots, you
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#' can create the cache in a location outside of the temp directory.
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#' For example, it could be a subdirectory of the application, as in
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#' \code{cache=DiskCache$new(plot1_cache")}. You may need to manually
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#' remove this directory to clear the cache.}
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#' }
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#'
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#'
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#' @inheritParams renderPlot
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#' @param cacheKeyExpr An expression that returns a cache key. This key should
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#' be a unique identifier for a plot: the assumption is that if the cache key
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#' is the same, then the plot will be the same.
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#' @param sizePolicy A function that takes two arguments, \code{width} and
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#' \code{height}, and returns a list with \code{width} and \code{height}. The
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#' purpose is to round the actual pixel dimensions from the browser to some
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#' other dimensions, so that this will not generate and cache images of every
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#' possible pixel dimension. See \code{\link{sizeGrowthRatio}} for more
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#' information on the default sizing policy.
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#' @param res The resolution of the PNG, in pixels per inch.
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#' @param cache The scope of the cache, or a cache object. This can be
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#' \code{"app"} (the default), \code{"session"}, or a cache object like
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#' a \code{\link{DiskCache}}. See the Cache Scoping section for more
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#' information.
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#'
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#' @seealso See \code{\link{renderPlot}} for the regular, non-cached version of
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#' this function.
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#'
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#'
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#' @examples
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#' ## Only run examples in interactive R sessions
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#' if (interactive()) {
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#'
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#' # A basic example
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#' shinyApp(
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#' fluidPage(
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#' sidebarLayout(
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#' sidebarPanel(
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#' sliderInput("n", "Number of points", 4, 32, value = 8, step = 4)
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#' ),
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#' mainPanel(plotOutput("plot"))
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#' )
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#' ),
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#' function(input, output, session) {
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#' output$plot <- renderCachedPlot({
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#' Sys.sleep(2) # Add an artificial delay
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#' seqn <- seq_len(input$n)
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#' plot(mtcars$wt[seqn], mtcars$mpg[seqn],
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#' xlim = range(mtcars$wt), ylim = range(mtcars$mpg))
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#' },
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#' cacheKeyExpr = { list(input$n) }
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#' )
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#' }
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#' )
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#'
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#'
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#'
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#' # An example that allows resetting the cache
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#' mydata <- reactiveVal(data.frame(x = rnorm(400), y = rnorm(400)))
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#'
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#' ui <- fluidPage(
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#' sidebarLayout(
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#' sidebarPanel(
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#' sliderInput("n", "Number of points", 50, 400, 100, step = 50),
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#' actionButton("newdata", "New data")
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#' ),
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#' mainPanel(
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#' plotOutput("plot")
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#' )
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#' )
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#' )
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#'
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#' server <- function(input, output, session) {
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#' observeEvent(input$newdata, {
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#' mydata(data.frame(x = rnorm(400), y = rnorm(400)))
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#' })
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#'
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#' output$plot <- renderCachedPlot(
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#' {
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#' Sys.sleep(2)
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#' d <- mydata()
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#' seqn <- seq_len(input$n)
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#' plot(d$x[seqn], d$y[seqn], xlim = range(d$x), ylim = range(d$y))
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#' },
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#' cacheKeyExpr = { list(input$n, mydata()) },
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#' cache = "app"
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#' )
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#' }
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#'
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#' shinyApp(ui, server)
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#'
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#'
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#' }
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#'
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#' @export
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renderCachedPlot <- function(expr,
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cacheKeyExpr,
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sizePolicy = sizeGrowthRatio(width = 400, height = 400, growthRate = 1.2),
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res = 72,
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cache = "app",
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...,
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env = parent.frame(), quoted = FALSE, outputArgs = list()
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) {
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# This ..stacktraceon is matched by a ..stacktraceoff.. when plotFunc
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# is called
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installExprFunction(expr, "func", env, quoted, ..stacktraceon = TRUE)
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# This is so that the expr doesn't re-execute by itself; it needs to be
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# triggered by the cache key (or width/height) changing.
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isolatedFunc <- function() isolate(func())
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args <- list(...)
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cacheKey <- reactive(substitute(cacheKeyExpr), env = parent.frame(), quoted = TRUE)
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ensureCacheSetup <- function(outputName) {
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# For our purposes, cache objects must support these methods.
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isCacheObject <- function(x) {
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# Use tryCatch in case the object does not support `$`.
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tryCatch(
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is.function(x$has) && is.function(x$get) && is.function(x$set),
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error = function(e) FALSE
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)
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}
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if (isCacheObject(cache)) {
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# If `cache` is already a cache object, do nothing
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return()
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} else if (identical(cache, "app")) {
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cacheDir <- file.path(tempdir(),
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paste0("shinyapp-", getShinyOption("appToken"))
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)
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cache <<- DiskCache$new(cacheDir, max_size = 5*1024^2, reset_on_finalize = FALSE)
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} else if (identical(cache, "session")) {
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session$getCache()
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cacheDir <- file.path(tempdir(),
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paste0("shinyapp-", getShinyOption("appToken"), "-", session$token)
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)
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cache <<- DiskCache$new(cacheDir, max_size = 5*1024^2, reset_on_finalize = TRUE)
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} else {
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stop('`cache` must either be "app", "session", or a cache object with methods `$has`, `$get`, and `$set`.')
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}
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}
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resizeObserver <- NULL
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ensureResizeObserver <- function() {
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if (!is.null(resizeObserver))
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return()
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# Given the actual width/height of the image in the browser, this gets
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# the width/height from sizePolicy() and pushes those
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# values into `fitDims`. It's done this way so that the `fitDims` only
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# change (and cause invalidations) when the rendered image size changes,
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# and not every time the browser's <img> tag changes size.
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resizeObserver <<- observe({
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cat("resize\n")
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width <- session$clientData[[paste0('output_', outputName, '_width')]]
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height <- session$clientData[[paste0('output_', outputName, '_height')]]
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rect <- sizePolicy(c(width, height))
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fitDims$width <- rect[1]
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fitDims$height <- rect[2]
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})
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}
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# The width and height of the plot to draw, given from sizePolicy. These
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# values get filled by an observer below.
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fitDims <- reactiveValues(width = NULL, height = NULL)
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# Vars to store session and output, so that they can be accessed from
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# the plotObj() reactive.
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session <- NULL
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outputName <- NULL
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# This can be used to trigger drawReactive() to re-execute. This is
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# necessary in some cases.
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drawReactiveTrigger <- reactiveVal(0)
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# Calls drawPlot, invoking the user-provided `func` (which may or may not
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# return a promise). The idea is that the (cached) return value from this
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# reactive can be used for varying width/heights, as it includes the
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# displaylist, which is resolution independent.
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drawReactive <- reactive(label = "plotObj", {
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hybrid_chain(
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{
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# Get width/height, but don't depend on them.
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isolate({
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width <- fitDims$width
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height <- fitDims$height
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})
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# The first execution will have NULL width/height, because they haven't
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# yet been retrieved from clientData.
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req(width, height, cancelOutput = TRUE)
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drawReactiveTrigger()
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cat("drawReactive()\n")
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pixelratio <- session$clientData$pixelratio %OR% 1
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key <- digest::digest(list(cacheKey(), width, height, res, pixelratio), "sha256")
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if (cache$has(key)) {
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cat("drawReactive(): cached\n")
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# This will NOT include the displaylist.
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cache$get(key)
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} else {
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cat("drawReactive(): drawPlot()\n")
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# This will include the displaylist.
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result <- do.call("drawPlot", c(
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list(
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name = outputName,
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session = session,
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func = isolatedFunc,
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width = width,
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height = height,
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pixelratio = pixelratio,
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res = res
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),
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args
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))
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# Cache a copy of the result, but without the recorded plot, because
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# it can't be saved and restored properly within the same R session.
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# Note that this was fixed in revision 74506 (2e6c669), and should
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# be in R 3.5.0, but we need to work on older versions. Perhaps in
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# the future we could do a version check and change caching behavior
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# based on that.
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result_copy <- result
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result_copy$recordedPlot <- NULL
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cache$set(key, result_copy)
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result
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}
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},
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catch = function(reason) {
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# Non-isolating read. A common reason for errors in plotting is because
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# the dimensions are too small. By taking a dependency on width/height,
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# we can try again if the plot output element changes size.
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fitDims$width
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fitDims$height
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# Propagate the error
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stop(reason)
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}
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)
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})
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# This function is the one that's returned from renderPlot(), and gets
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# wrapped in an observer when the output value is assigned.
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renderFunc <- function(shinysession, name, ...) {
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outputName <<- name
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session <<- shinysession
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ensureCacheSetup(outputName)
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ensureResizeObserver()
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cat("renderFunc()\n")
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hybrid_chain(
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drawReactive(),
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function(result) {
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cat("renderFunc() chain\n")
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# Take a reactive dependency on the fitted dimensions
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width <- fitDims$width
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height <- fitDims$height
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pixelratio <- session$clientData$pixelratio %OR% 1
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key <- digest::digest(list(cacheKey(), width, height, res, pixelratio), "sha256")
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if (cache$has(key)) {
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cat("renderFunc(): cached\n")
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result <- cache$get(key)
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} else {
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if (is.null(result$recordedPlot)) {
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# This is an uncommon case. (1) The output from drawPlot was saved
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# to RDS (without a recordedPlot, since that can't be properly
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# saved). (2) drawPlot was called with another set of inputs (so
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# it didn't load from cache). (3) drawPlot was called, getting a
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# cache hit and restoring the first RDS. (4) the plot is resized,
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# so this reactive executes (and not drawPlot). In this situation,
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# there's no recordedPlot that can be replayed, so we have to
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# trigger drawPlot() to run again.
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cat("renderFunc(): drawReactiveTrigger()\n")
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drawReactiveTrigger(drawReactiveTrigger() + 1)
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req(FALSE, cancelOutput = TRUE)
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} else {
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cat("renderFunc(): resizeSavedPlot()\n")
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result <- do.call("resizeSavedPlot", c(
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list(
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name,
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shinysession,
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result,
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width,
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height,
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pixelratio,
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res
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),
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args
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))
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# Cache the result, but without recordedPlot
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result_copy <- result
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result_copy$recordedPlot <- NULL
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cache$set(key, result_copy)
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}
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}
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img <- result$img
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# Replace exact pixel dimensions; instead tell it to fill.
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img$width <- "100%"
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img$height <- NULL
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img
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}
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)
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}
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# If renderPlot isn't going to adapt to the height of the div, then the
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# div needs to adapt to the height of renderPlot. By default, plotOutput
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# sets the height to 400px, so to make it adapt we need to override it
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# with NULL.
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outputFunc <- plotOutput
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formals(outputFunc)['height'] <- list(NULL)
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markRenderFunction(outputFunc, renderFunc, outputArgs = outputArgs)
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}
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#' Create a sizing function that grows at a given ratio
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#'
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#' Returns a function which takes a two-element vector representing an input
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#' width and height, and returns a two-element vector of width and height. The
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#' possible widths are the base width times the growthRate to any integer power.
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#' For example, with a base width of 500 and growth rate of 1.25, the possible
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#' widths include 320, 400, 500, 625, 782, and so on, both smaller and larger.
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#' Sizes are rounded up to the next pixel. Heights are computed the same way as
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#' widths.
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#'
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#' @param width,height Base width and height.
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#' @param growthRate Growth rate multiplier.
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#'
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#' @seealso This is to be used with \code{\link{renderCachedPlot}}.
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#'
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#' @examples
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#' f <- sizeGrowthRatio(500, 500, 1.25)
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#' f(c(400, 400))
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#' f(c(500, 500))
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#' f(c(530, 550))
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#' f(c(625, 700))
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#'
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#' @export
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sizeGrowthRatio <- function(width = 400, height = 400, growthRate = 1.2) {
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round_dim_up <- function(x, base, rate) {
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power <- ceiling(log(x / base, rate))
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ceiling(base * rate^power)
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}
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function(dims) {
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if (length(dims) != 2) {
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stop("dims must be a vector with two numbers, for width and height.")
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}
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c(
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round_dim_up(dims[1], width, growthRate),
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round_dim_up(dims[2], height, growthRate)
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)
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}
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}
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