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501 lines
19 KiB
R
501 lines
19 KiB
R
#' Plot output with cached images
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#'
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#' Renders a reactive plot, with plot images cached to disk.
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#'
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#' \code{expr} is an expression that generates a plot, similar to that in
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#' \code{renderPlot}. Unlike with \code{renderPlot}, this expression does not
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#' take reactive dependencies. It is re-executed only when the cache key
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#' changes.
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#'
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#' \code{cacheKeyExpr} is an expression which, when evaluated, returns an object
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#' which will be serialized and hashed using the \code{\link[digest]{digest}}
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#' function to generate a string that will be used as a cache key. This key is
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#' used to identify the contents of the plot: if the cache key is the same as a
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#' previous time, it assumes that the plot is the same and can be retrieved from
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#' the cache.
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#'
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#' This \code{cacheKeyExpr} is reactive, and so it will be re-evaluated when any
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#' upstream reactives are invalidated. This will also trigger re-execution of
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#' the plotting expression, \code{expr}.
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#'
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#' The key should consist of "normal" R objects, like vectors and lists. Lists
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#' should in turn contain other normal R objects. If the key contains
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#' environments, external pointers, or reference objects -- or even if it has
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#' such objects attached as attributes -- then it is possible that it will
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#' change unpredictably even when you do not expect it to. Additionally, because
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#' the entire key is serialized and hashed, if it contains a very large object
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#' -- a large data set, for example -- there may be a noticeable performance
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#' penalty.
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#'
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#' If you face these issues with the cache key, you can work around them by
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#' extracting out the important parts of the objects, and/or by converting them
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#' to normal R objects before returning them. Your expression could even
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#' serialize and hash that information in an efficient way and return a string,
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#' which will in turn be hashed (very quickly) by the
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#' \code{\link[digest]{digest}} function.
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#'
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#'
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#' \code{cacheResetEventExpr} is an expression that uses reactive values like
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#' \code{input$click} and/or reactive expressions like \code{data()}. The
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#' \code{cacheResetEventExpr} parameter works similarly to the \code{eventExpr}
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#' parameter of \code{\link{observeEvent}}: whenever the upstream reactive
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#' dependencies are invalidated, they cause this expression to re-execute, and
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#' the cache is reset -- the contents are erased. The cache should be reset when
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#' something changes so that a plot made with the same cache key as before would
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#' have a different result. This may happen when, for example, the underlying
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#' data changes. If the plot is based on a data source that changes over time,
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#' the plot at time 1 may differ from the plot at time 2, even if both plots use
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#' the same cache key.
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#'
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#' Another way to use \code{cacheResetEventExpr} is to have it clear the cache
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#' at a fixed time interval using \code{\link{invalidateLater}}. For example,
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#' you might want to have clear the cache once per hour, or once per day.
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#'
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#' Although both \code{cacheKeyExpr} and \code{cacheResetEventExpr} are reactive
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#' -- they re-execute when their upstream reactive dependencies are invalidated
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#' -- they differ in how they use the return value. For \code{cacheKeyExpr}, the
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#' returned value is used (as a key). In contrast, for
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#' \code{cacheResetEventExpr}, the return value is ignored; the invalidation of
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#' the expression is used only to signal that the cache should be reset.
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#'
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#' @section Cache scoping:
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#'
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#' There are a number of different ways you may want to scope the cache. For
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#' example, you may want each user session to have their own plot cache, or
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#' you may want each run of the application to have a cache (shared among
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#' possibly multiple simultaneous user sessions), or you may want to have a
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#' cache that persists even after the application is shut down and started
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#' again.
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#'
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#' To control the scope of the cache, use the \code{scope} parameter. There
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#' are two ways of having Shiny automatically create and clean up the disk
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#' cache.
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#'
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#' \describe{
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#' \item{1}{To scope the cache to one session, use \code{scope="session"}.
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#' When a new user session starts -- in other words, when a web browser
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#' visits the Shiny application -- a new cache will be created on disk
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#' for that session. When the session ends, the cache will be deleted.
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#' The cache will not be shared across multiple sessions.}
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#' \item{2}{To scope the cache to one run of a Shiny application (shared
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#' among possibly multiple user sessions), use \code{scope="app"}. This
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#' is the default. The cache will be shared across multiple sessions, so
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#' there is potentially a large performance benefit if there are many users
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#' of the application. If plots cannot be safely shared across users, this
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#' should not be used.}
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#' }
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#'
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#' In some cases, you may want to manually specify the cache directory. This
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#' can be useful if you want the cache to persist across multiple runs of an
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#' application, or even across multiple R processes.
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#'
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#' \describe{
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#' \item{3}{To have the cache persist across multiple runs of an R process,
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#' use \code{scope=file.path(dirname(tempdir()), "plot1_cache")}.
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#' This will create a subdirectory in your system temp directory named
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#' \code{plot1_cache} (where \code{plot1_cache} is replaced with a unique
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#' name of your choosing). When the R process exits, it will automatically
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#' be removed.}
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#' \item{4}{To have the cache persist even across multiple R processes, you
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#' can set \code{cacheDir} to a location outside of the temp directory.
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#' For example, it could be a subdirectory of the application, as in
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#' \code{scope="plot1_cache"}}.
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#' }
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#'
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#' Please note that if you specify a directory, that directory should only be
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#' used to plot cache files. If it contains any other files or directories,
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#' they could be removed when the cache is invalidated. Additionally, the
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#' directory will not automatically be cleaned up or removed when the Shiny
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#' application exits.
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#'
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#' @inheritParams renderPlot
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#' @param cacheKeyExpr An expression that returns a cache key. This key should
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#' be a unique identifier for a plot: the assumption is that if the cache key
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#' is the same, then the plot will be the same.
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#' @param cacheResetEventExpr An expression or block of code that accesses any
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#' reactives whose invalidation should cause the cached plots to be cleared.
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#' If \code{NULL} (the default) the cache will not get cleared.
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#' @param sizePolicy A function that takes two arguments, \code{width} and
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#' \code{height}, and returns a list with \code{width} and \code{height}.
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#' The purpose is to round the actual pixel dimensions from the browser to
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#' some other dimensions, so that this will not generate and cache images of
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#' every possible pixel dimension. See \code{\link{sizeGrowthRatio}} for
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#' more information on the default sizing policy.
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#' @param res The resolution of the PNG, in pixels per inch.
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#' @param scope The scope of the cache. This can be \code{"app"} (the default),
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#' \code{"session"}, or the path to a directory to store cached plots. See the
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#' Cache Scoping section for more information.
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#'
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#' @seealso See \code{\link{renderPlot}} for the regular, non-cached version of
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#' this function.
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#'
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#'
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#' @examples
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#' ## Only run examples in interactive R sessions
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#' if (interactive()) {
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#'
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#' # A basic example
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#' shinyApp(
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#' fluidPage(
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#' sidebarLayout(
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#' sidebarPanel(
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#' sliderInput("n", "Number of points", 4, 32, value = 8, step = 4)
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#' ),
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#' mainPanel(plotOutput("plot"))
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#' )
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#' ),
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#' function(input, output, session) {
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#' output$plot <- renderCachedPlot({
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#' Sys.sleep(2) # Add an artificial delay
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#' seqn <- seq_len(input$n)
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#' plot(mtcars$wt[seqn], mtcars$mpg[seqn],
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#' xlim = range(mtcars$wt), ylim = range(mtcars$mpg))
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#' },
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#' cacheKeyExpr = { list(input$n) }
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#' )
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#' }
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#' )
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#'
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#'
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#'
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#' # An example that allows resetting the cache
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#' mydata <- reactiveVal(data.frame(x = rnorm(400), y = rnorm(400)))
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#'
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#' ui <- fluidPage(
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#' sidebarLayout(
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#' sidebarPanel(
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#' sliderInput("n", "Number of points", 50, 400, 100, step = 50),
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#' actionButton("newdata", "New data")
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#' ),
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#' mainPanel(
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#' plotOutput("plot")
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#' )
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#' )
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#' )
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#'
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#' server <- function(input, output, session) {
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#' observeEvent(input$newdata, {
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#' mydata(data.frame(x = rnorm(400), y = rnorm(400)))
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#' })
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#'
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#' output$plot <- renderCachedPlot(
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#' {
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#' Sys.sleep(2)
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#' d <- mydata()
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#' seqn <- seq_len(input$n)
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#' plot(d$x[seqn], d$y[seqn], xlim = range(d$x), ylim = range(d$y))
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#' },
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#' cacheKeyExpr = { list(input$n) },
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#' cacheResetEventExpr = { mydata() }, # Reset cache when mydata() changes
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#' scope = "app"
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#' )
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#' }
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#'
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#' shinyApp(ui, server)
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#'
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#'
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#' }
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#'
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#' @export
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renderCachedPlot <- function(expr, cacheKeyExpr, cacheResetEventExpr = NULL,
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sizePolicy = sizeGrowthRatio(width = 400, height = 400, growthRate = 1.2),
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res = 72,
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scope = "app",
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...,
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env = parent.frame(), quoted = FALSE, outputArgs = list()
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) {
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# This ..stacktraceon is matched by a ..stacktraceoff.. when plotFunc
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# is called
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installExprFunction(expr, "func", env, quoted, ..stacktraceon = TRUE)
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# This is so that the expr doesn't re-execute by itself; it needs to be
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# triggered by the cache key (or width/height) changing.
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isolatedFunc <- function() isolate(func())
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args <- list(...)
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cacheKey <- reactive(substitute(cacheKeyExpr), env = parent.frame(), quoted = TRUE)
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.cacheDir <- NULL
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cacheDir <- function() {
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# Memoize
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if (is.null(.cacheDir)) {
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if (is.null(outputName)) {
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stop("outputName is NULL. cacheDir() was called too early.")
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}
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if (scope %in% c("app", "session")) {
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appCachePath <- file.path(tempdir(), paste0("shinyapp-", getShinyOption("appToken")))
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if (scope == "app") {
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cacheScopePath <- appCachePath
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} else if (scope == "session") {
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cacheScopePath <- file.path(appCachePath, paste0("shinysession-", session$token))
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}
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.cacheDir <<- file.path(cacheScopePath, paste0("output-", outputName))
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} else {
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# User has passed in a directory
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.cacheDir <<- absolutePath(scope)
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}
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}
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.cacheDir
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}
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ensureCacheDirExists <- function() {
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if (!dirExists(cacheDir())) {
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cat("Creating ", cacheDir(), "\n")
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dir.create(cacheDir(), recursive = TRUE, mode = "0700")
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# Set up removal of cache directory at appropriate time. The removal
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# callback is registered here, paired with the creation of the cache
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# dir, to ensure it's not scheduled multiple times for one directory.
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deleteCacheDir <- function() {
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# Just to be safe, don't try to delete the cache dir if it's already
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# gone.
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if (!dirExists(cacheDir())) {
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return()
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}
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unlink(cacheDir(), recursive = TRUE)
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# Recursively delete empty parent dirs, up to temp dir.
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currentDir <- dirname(cacheDir())
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while (currentDir != tempdir() &&
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length(dir(currentDir, all.files = TRUE, no.. = TRUE)) == 0)
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{
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dirRemove(currentDir)
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currentDir <- dirname(currentDir)
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}
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}
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if (scope == "app") {
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onStop(deleteCacheDir, session = NULL)
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} else if (scope == "session") {
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onSessionEnded(deleteCacheDir)
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}
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}
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}
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# Clear the cacheDir at the appropriate time. Use ignoreInit=TRUE because we
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# don't want it to happen right in the beginning.
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observeEvent(
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substitute(cacheResetEventExpr), event.env = parent.frame(), event.quoted = TRUE,
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ignoreInit = TRUE,
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{
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unlink(file.path(cacheDir(), "*.rds"))
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# Cause drawReactive() to re-execute, so renderFunc doesn't use the
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# cached value.
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drawReactiveTrigger(drawReactiveTrigger() + 1)
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}
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)
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# The width and height of the plot to draw, given from sizePolicy. These
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# values get filled by an observer below.
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fitDims <- reactiveValues(width = NULL, height = NULL)
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# Vars to store session and output, so that they can be accessed from
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# the plotObj() reactive.
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session <- NULL
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outputName <- NULL
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# This can be used to trigger drawReactive() to re-execute. This is
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# necessary in some cases.
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drawReactiveTrigger <- reactiveVal(0)
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# Calls drawPlot, invoking the user-provided `func` (which may or may not
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# return a promise). The idea is that the (cached) return value from this
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# reactive can be used for varying width/heights, as it includes the
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# displaylist, which is resolution independent.
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drawReactive <- reactive(label = "plotObj", {
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hybrid_chain(
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{
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# Get width/height, but don't depend on them.
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isolate({
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width <- fitDims$width
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height <- fitDims$height
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})
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# The first execution will have NULL width/height, because they haven't
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# yet been retrieved from clientData.
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req(width, height, cancelOutput = TRUE)
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drawReactiveTrigger()
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cat("drawReactive()\n")
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pixelratio <- session$clientData$pixelratio %OR% 1
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ensureCacheDirExists()
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key <- digest::digest(list(cacheKey(), width, height, res, pixelratio))
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resultFilePath <- file.path(cacheDir(), paste0(key, ".rds"))
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if (file.exists(resultFilePath)) {
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cat("drawReactive(): cached\n")
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# This will NOT include the displaylist.
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readRDS(resultFilePath)
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} else {
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cat("drawReactive(): drawPlot()\n")
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# This includes the displaylist.
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do.call("drawPlot", c(
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list(
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name = outputName,
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session = session,
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func = isolatedFunc,
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width = width,
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height = height,
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pixelratio = pixelratio,
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res = res,
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resultfile = resultFilePath
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),
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args
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))
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}
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},
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catch = function(reason) {
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# Non-isolating read. A common reason for errors in plotting is because
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# the dimensions are too small. By taking a dependency on width/height,
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# we can try again if the plot output element changes size.
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fitDims$width
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fitDims$height
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# Propagate the error
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stop(reason)
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}
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)
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})
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# This function is the one that's returned from renderPlot(), and gets
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# wrapped in an observer when the output value is assigned.
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renderFunc <- function(shinysession, name, ...) {
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outputName <<- name
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session <<- shinysession
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# Given the actual width/height of the image in the browser, this gets
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# the width/height from sizePolicy() and pushes those
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# values into `fitDims`. It's done this way so that the `fitDims` only
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# change (and cause invalidations) when the rendered image size changes,
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# and not every time the browser's <img> tag changes size.
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observe({
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width <- session$clientData[[paste0('output_', outputName, '_width')]]
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height <- session$clientData[[paste0('output_', outputName, '_height')]]
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rect <- sizePolicy(c(width, height))
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fitDims$width <- rect[1]
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fitDims$height <- rect[2]
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})
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hybrid_chain(
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drawReactive(),
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function(result) {
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cat("renderFunc()\n")
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# Take a reactive dependency on the fitted dimensions
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width <- fitDims$width
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height <- fitDims$height
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pixelratio <- session$clientData$pixelratio %OR% 1
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ensureCacheDirExists()
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key <- digest::digest(list(cacheKey(), width, height, res, pixelratio))
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resultFilePath <- file.path(cacheDir(), paste0(key, ".rds"))
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if (file.exists(resultFilePath)) {
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cat("renderFunc(): cached\n")
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cachedPlot <- readRDS(resultFilePath)
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img <- cachedPlot$img
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} else {
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if (is.null(result$recordedPlot)) {
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# This is an uncommon case. (1) The output from drawPlot was saved
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# to RDS (without a recordedPlot, since that can't be properly
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# saved). (2) drawPlot was called with another set of inputs (so
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# it didn't load from cache). (3) drawPlot was called, getting a
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# cache hit and restoring the first RDS. (4) the plot is resized,
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# so this reactive executes (and not drawPlot). In this situation,
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# there's no recordedPlot that can be replayed, so we have to
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# trigger drawPlot() to run again.
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cat("renderFunc(): drawReactiveTrigger()\n")
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drawReactiveTrigger(drawReactiveTrigger() + 1)
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req(FALSE, cancelOutput = TRUE)
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} else {
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cat("renderFunc(): resizeSavedPlot()\n")
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img <- do.call("resizeSavedPlot", c(
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list(
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name,
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shinysession,
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result,
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width,
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height,
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pixelratio,
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res,
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resultfile = resultFilePath
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),
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args
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))
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}
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}
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# Replace exact pixel dimensions; instead tell it to fill.
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img$width <- "100%"
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img$height <- NULL
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img
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}
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)
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}
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# If renderPlot isn't going to adapt to the height of the div, then the
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# div needs to adapt to the height of renderPlot. By default, plotOutput
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# sets the height to 400px, so to make it adapt we need to override it
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# with NULL.
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outputFunc <- plotOutput
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formals(outputFunc)['height'] <- list(NULL)
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markRenderFunction(outputFunc, renderFunc, outputArgs = outputArgs)
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}
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#' Create a sizing function that grows at a given ratio
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#'
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#' Returns a function which takes a two-element vector representing an input
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#' width and height, and returns a two-element vector of width and height. The
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#' possible widths are the base width times the growthRate to any integer power.
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#' For example, with a base width of 500 and growth rate of 1.25, the possible
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#' widths include 320, 400, 500, 625, 782, and so on, both smaller and larger.
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#' Sizes are rounded up to the next pixel. Heights are computed the same way as
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#' widths.
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#'
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#' @param width,height Base width and height.
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#' @param growthRate Growth rate multiplier.
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#'
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#' @seealso This is to be used with \code{\link{renderCachedPlot}}.
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#'
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#' @examples
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#' f <- sizeGrowthRatio(500, 500, 1.25)
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#' f(c(400, 400))
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#' f(c(500, 500))
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#' f(c(530, 550))
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#' f(c(625, 700))
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#'
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#' @export
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sizeGrowthRatio <- function(width = 400, height = 400, growthRate = 1.2) {
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round_dim_up <- function(x, base, rate) {
|
|
power <- ceiling(log(x / base, rate))
|
|
ceiling(base * rate^power)
|
|
}
|
|
|
|
function(dims) {
|
|
if (length(dims) != 2) {
|
|
stop("dims must be a vector with two numbers, for width and height.")
|
|
}
|
|
c(
|
|
round_dim_up(dims[1], width, growthRate),
|
|
round_dim_up(dims[2], height, growthRate)
|
|
)
|
|
}
|
|
}
|