adding initial component code

1_pulsar_querying/openXNAV-gui/app.py

@@ -0,0 +1,256 @@
+import re
+import pandas as pd
+import os
+import kivymd.uix
+from kivy.lang import Builder
+from kivymd.app import MDApp
+from kivy.properties import ObjectProperty
+from kivymd.uix.screen import MDScreen
+from kivy.uix.screenmanager import ScreenManager
+from kivy.properties import StringProperty
+from kivy.properties import *
+from kivy.clock import Clock
+from queryPulsar import *
+import copy
+import time
+import numpy as np
+from kivymd.uix.label import MDLabel
+
+
+from kivy.core.window import Window
+Window.size = (1920/2, 1080/2)
+
+_root_app = False
+
+def updateText(obj, formatFunc, txt):
+	newText = formatFunc(txt)
+	obj.text = newText
+
+def setEnabled(button, isEnabled):
+	button.disabled = not isEnabled
+
+class StartPage(MDScreen):
+	def __init__(self, **kwargs):
+		super(MDScreen, self).__init__(**kwargs)
+		# lambda functions
+		self.generateLoadingText = lambda txt : "\n\n[b][font=Gentona-BookItalic][size=15sp]{}[/b][/size][/font]".format(txt)
+		self.generateButtonText = lambda txt : "[font=Gentona-Bold]{}[/font]".format(txt)
+
+		self.stack = []
+		self.num_delayed = 0
+		self.db_processing_event = None
+
+		Clock.schedule_once(self._on_load_complete)
+
+	def _on_load_complete(self, dt):
+
+		# kivy objects
+		progressBar = self.ids.progress
+		loading_text = self.ids.loadingText
+		startButton = self.ids.startButton
+		# lambda functions
+		generateLoadingText = self.generateLoadingText
+		generateButtonText = self.generateButtonText
+		
+		# initialize
+		updateText(startButton, generateButtonText, "LAUNCH APPLICATION")
+		setEnabled(startButton, False) # disable button until we check for existing db
+		updateText(loading_text, generateLoadingText, "Checking for existing pulsar database . . .")
+		progressBar.start()
+
+		## check for existing database
+		hasExistingDatabase = self.checkForExistingDatabase("pulsar_database/")
+		if hasExistingDatabase: 
+			Clock.schedule_once(lambda x: self.setup_existingDatabase(progressBar, loading_text, startButton), 1.5)
+		else: 
+			Clock.schedule_once(lambda x: self.setup_generateDatabase(progressBar, loading_text, startButton), 1.5)
+	
+
+	#############
+	## UTILITY ##
+	#############
+
+	def setup_existingDatabase(self, progressBar, loading_text, startButton): 
+		updateText(loading_text, self.generateLoadingText, "Found existing database!")
+		progressBar.stop()
+		setEnabled(startButton, True)
+		return
+
+	def setup_generateDatabase(self, progressBar, loading_text, startButton):
+		progressBar.stop()
+		progressBar.type = 'determinate'
+		progressBar.color = _root_app.theme_cls.accent_color
+		self.generatePulsarDatabase(progressBar, loading_text)
+
+	def checkForExistingDatabase(self, database_directory):
+		if not os.path.exists(database_directory):
+			os.mkdir(database_directory)
+			return False
+		else: 
+			return True
+
+	def generatePulsarDatabase(self, progressBar, loading_text, root_directory="pulsar_database/"):
+		# first, grab all known pulsars
+		db = _root_app.psrdb.full_database()
+		progressBar.max = len(db)
+
+		truncated_db = db[['PSRJ','PEPOCH', 'DECJ', 'RAJD']]
+		truncated_db = truncated_db.values.tolist()
+
+		self.db_processing_event = Clock.schedule_interval(lambda x: self.handleSinglePulsarEntry(), 0.001)
+
+		for i in range(0, len(truncated_db)):
+			pulsar = truncated_db[i]
+			p = Pulsar(pulsar[0], pulsar[1], pulsar[2], pulsar[3])
+			self.stack.append(copy.deepcopy(p))
+
+
+	def handleSinglePulsarEntry(self):
+		start = time.perf_counter()
+		progressBar = self.ids.progress
+		loading_text = self.ids.loadingText
+		startButton = self.ids.startButton
+		root_directory = "pulsar_database/"
+
+		if len(self.stack) > 0:
+			pulsar = self.stack.pop()
+			pulsar.saveToFile(root_directory)
+			updateText(loading_text, self.generateLoadingText, "Loading {} into database . . .".format(pulsar.p_name))
+			progressBar.value = progressBar.value + 1
+		else: 
+			self.db_processing_event.cancel()
+			updateText(loading_text, self.generateLoadingText, "Successfully generated pulsar database!")
+			setEnabled(startButton, True) 
+
+		stop = time.perf_counter()
+		if stop - start > 0.5:
+			self.num_delayed = self.num_delayed + 1
+
+
+
+			
+
+class QueryPage(MDScreen):
+	def __init__(self, **kwargs):
+		super(MDScreen, self).__init__(**kwargs)
+		self.raj1 = None
+		self.dec1 = None
+		self.rad1 = None
+		self.tag1 = None
+
+		self.outputStack = []
+		self.bannerStack = []
+
+		self.outputDisplay = None
+		self.outputBanner = None
+
+		self.generateOutputText = lambda txt : "[font=Gentona-Book]{}[/font]".format(txt)
+
+		Clock.schedule_once(self._on_load_complete)
+
+	def _on_load_complete(self, dt):
+		self.raj1 = self.ids.raj1.text
+		self.dec1 = self.ids.dec1.text
+		if self.rad1 != None and self.rad1 != "": 
+			self.rad1 = float(self.ids.rad1.text)
+		self.tag1 = self.ids.tag1.text
+		self.outputDisplay = self.ids.output_display
+		self.outputBanner = self.ids.output_banner
+
+		setEnabled(self.ids.find_pulsars_button, True)
+
+	def setRAJ1(self, user_input):
+		self.raj1 = user_input
+
+	def setDEC1(self, user_input):
+		self.dec1 = user_input
+
+	def setRAD1(self, user_input):
+		self.rad1 = float(user_input)
+
+	def setTag(self, user_input):
+		print(self.tag1)
+		self.tag1 = user_input
+
+	def updateOutputDisplay(self, display, stack):
+		display.clear_widgets()
+		for i in range(0, len(stack)):
+			display.add_widget(stack[i])
+		stack = []
+
+	def findPulsars(self):
+		print("Your query: " + str(self.raj1) + str(self.dec1) + str(self.rad1))
+		if len(str(self.raj1)) > 0 and  len(str(self.dec1)) > 0 and  len(str(self.rad1)) > 0:
+			result = _root_app.psrdb.query(self.raj1, self.dec1, self.rad1)
+			# result = _root_app.psrdb.query("17:47:26", "65.64", 15)
+
+			truncated_db = result[['PSRJ','PEPOCH', 'DECJ', 'RAJD']]
+			truncated_db = truncated_db.values.tolist()
+
+			data_directory = "query_results/"
+			if not os.path.exists(data_directory):
+				os.mkdir(data_directory)
+
+			print("tag")
+			print(self.tag1)
+			if self.tag1 != None and self.tag1 != "" and len(str(self.tag1)) > 0: 
+				if len(self.tag1) > 0:
+					data_directory = data_directory + self.tag1 + "/"
+
+			else: 
+				full_str = str(self.raj1) + str(self.dec1) + str(self.rad1)
+				auto_gen_tag = re.sub(r'[^a-zA-Z0-9]', '', full_str)
+				data_directory = data_directory + auto_gen_tag + "/"
+			
+			if not os.path.exists(data_directory):
+					os.mkdir(data_directory)
+
+			if len(truncated_db) > 0:
+				banner_str = "[b]{} pulsars found.[/b]".format(str(len(truncated_db))) + "\nResults saved to: " + data_directory
+				self.outputBanner.text = self.generateOutputText(banner_str)
+				
+				for pulsar in truncated_db:
+					p = Pulsar(pulsar[0], pulsar[1], pulsar[2], pulsar[3])
+					nameLabel = "id-" + str(pulsar[0])
+					output_str = self.generateOutputText(str(pulsar[0]))
+					output_widget = MDLabel(id=nameLabel, adaptive_height=True, markup=True, text=output_str, theme_text_color='Secondary', size_hint=[1.0, 0.1])
+					self.outputStack.append(output_widget)
+					p.saveToFile(data_directory)
+			else: 
+				self.outputBanner.text = self.generateOutputText("No pulsars found from this query. Adjust the parameters and try again.".format(str(len(truncated_db)))) 
+
+			self.updateOutputDisplay(self.outputDisplay, self.outputStack)
+			print("Results saved to: " + data_directory)
+
+
+class ScreenManager(ScreenManager):
+    def __init__(self, **kwargs):
+        super(ScreenManager, self).__init__(**kwargs)
+
+    def changeScreen(self, screen_name):
+        self.current = screen_name
+
+
+
+class MainApp(MDApp):
+	def build(self):
+		global _root_app
+		_root_app = self
+
+		self.psrdb = PulsarDatabase()
+		self.pulsar_dict = {}
+
+		## theme ##
+		self.theme_cls.theme_style = "Dark"
+		self.theme_cls.primary_palette = "Gray"
+		self.theme_cls.accent_palette = "Blue"
+
+		## icon ##
+		self.icon = '23-03611_OpenXNav_Color-icon.png'
+		self.title = 'OpenXNAV'
+
+		self.sm = ScreenManager()
+
+		return self.sm
+
+	

1_pulsar_querying/openXNAV-gui/environment.yml

@@ -0,0 +1,7 @@
+name: openXNAV-gui
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - kivy
+  - psrqpy

1_pulsar_querying/openXNAV-gui/kv/queryPage.kv

@@ -0,0 +1,106 @@
+<QueryPage>:
+
+    # box container
+    MDBoxLayout:
+        id: sp_boxLayout
+        size: self.parent.size
+        pos: self.parent.pos
+        orientation: 'vertical'
+        md_bg_color: app.theme_cls.bg_normal
+        padding: 30
+        spacing: 0
+
+        # grid layout
+        # 2 cols x 3 rows
+        MDGridLayout:
+            id: query_input
+            md_bg_color: app.theme_cls.bg_normal
+            cols: 2
+            rows: 3
+            padding: 30
+            spacing: [30, 15]
+            size_hint: [1, 0.8]
+            
+            # User Input - Right Ascension
+            MDTextField:
+                id: raj1
+                hint_text: "Right Ascension (HH:MM:SS)"
+                mode: "rectangle"
+                text: ""
+                mulitline: False
+                # required: True
+                # error_color: [1,.20,.20,1]
+                line_color_normal: app.theme_cls.opposite_bg_normal
+                on_text: app.sm.current_screen.setRAJ1(self.text)
+
+            # User Input - Declination
+            MDTextField:
+                id: dec1
+                hint_text: "Declination (Degrees)"
+                mode: "rectangle"
+                text: ""
+                mulitline: False
+                # required: True
+                # error_color: [1,.20,.20,1]
+                line_color_normal: app.theme_cls.opposite_bg_normal
+                on_text: app.sm.current_screen.setDEC1(self.text)
+
+            # User Input - Radius
+            MDTextField:
+                id: rad1
+                hint_text: "Radius"
+                text: ""
+                mode: "rectangle"
+                # required: True
+                # error_color: [1,.20,.20,1]
+                line_color_normal: app.theme_cls.opposite_bg_normal
+                on_text: app.sm.current_screen.setRAD1(self.text)
+
+            # Button - Submit/Query
+            MDFlatButton:
+                id: find_pulsars_button
+                text: "[font=Gentona-Bold]FIND PULSARS[/font]"
+                md_bg_color: app.theme_cls.accent_dark
+                padding: [30,15,30,15]
+                on_press: app.sm.current_screen.findPulsars()
+                disabled: True
+
+            # User Input - (Optional) Data Storage Tag
+            MDTextField:
+                id: tag1
+                hint_text: "Tag (Optional)"
+                mode: "rectangle"
+                multiline: False
+                required: False
+                on_text: app.sm.current_screen.setTag(self.text)
+
+            # Display - Query Results
+            MDGridLayout:
+                id: output_display
+                height: self.minimum_height
+                cols: 4
+                padding: 30
+                spacing: 0
+
+        # Banner - Feedback To User
+        MDBoxLayout:
+            id: output_banner_container
+            height: self.minimum_height
+            padding: 30
+            spacing: 0
+            size_hint: [1, 0.2]
+
+            MDLabel:    
+                id: output_banner
+                markup: True
+                theme_text_color: 'Secondary'
+                halign: 'left'
+                valign: 'bottom'
+
+
+
+
+
+
+
+

1_pulsar_querying/openXNAV-gui/kv/startPage.kv

@@ -0,0 +1,53 @@
+<StartPage>:
+    # box container
+    MDBoxLayout:
+        id: sp_boxLayout
+        size: self.parent.size
+        pos: self.parent.pos
+        orientation: 'vertical'
+        md_bg_color: app.theme_cls.bg_normal
+        padding: 30
+        spacing: 0
+
+        # PLANTS Banner Display
+        MDLabel: 
+            id: nameLabel   
+            markup: True
+            text: "\n\n[font=Gentona-ExtraBold][size=72sp]OpenXNAV[b][font=Gentona-BookItalic][size=16sp]powered by Johns Hopkins APL[/b][/size][/font]"
+            theme_text_color: 'Primary'
+            size: self.texture_size
+            halign: 'left'
+            valign: 'bottom'
+
+        # Start Button (Nav: QueryPage)
+        MDGridLayout:
+            id: sp_gridLayout 
+            cols: 1
+            rows: 1
+
+            MDRaisedButton:
+                id: startButton
+                padding: [30,15,30,15]
+                theme_text_color: "Custom"
+                text_color: 1, 1, 1, 1
+                line_color: 1, 1, 1, 1
+                md_bg_color: app.theme_cls.accent_dark
+                on_press: app.sm.changeScreen("queryPage")
+
+        # Progress Bar (Text Display)
+        MDLabel:    
+            id: loadingText
+            markup: True
+            theme_text_color: 'Secondary'
+            size: self.texture_size
+            halign: 'left'
+            valign: 'bottom'
+            size_hint: [1.0, 0.4]
+
+        # Progress Bar (to show loading progress)
+        MDProgressBar:
+            id: progress
+            type: "indeterminate"
+            color: app.theme_cls.accent_light
+            back_color: app.theme_cls.bg_normal
+            size_hint: [1.0, 0.1]

1_pulsar_querying/openXNAV-gui/main.kv

@@ -0,0 +1,19 @@
+#:include kv/startPage.kv
+#:include kv/queryPage.kv
+
+#:import FadeTransition kivy.uix.screenmanager.FadeTransition
+
+# App Manager - Will Toggle Between Views/Pages
+<ScreenManager>:
+    id: screen_manager
+    name: "screenManager"
+
+    # Default Page - Start Page
+    StartPage:
+        id: start_page
+        name: "startPage"
+
+    # Query Pulsars via User Provided Input
+    QueryPage:
+        id: query_page
+        name: "queryPage"

1_pulsar_querying/openXNAV-gui/queryPulsar.py

@@ -0,0 +1,135 @@
+from psrqpy import QueryATNF
+
+
+class PulsarDatabase():
+	def __init__(self, **kwargs):
+		query = QueryATNF()
+		self.db = query.pandas
+
+	def full_database(self):
+		return self.db
+	
+	def query(self, x, y, r):
+		print(x)
+		print(y)
+		print(r)
+		c = [x, y, r]
+		# result = QueryATNF(coord1=x, coord2=y, radius=r)
+		result = QueryATNF(params=['JNAME', 'PSRJ','PEPOCH', 'DECJ', 'RAJD'], circular_boundary=c)
+		return result.pandas
+
+
+def formatPulsarName(p_name):
+	name_split = p_name.split('+', 2)
+	if len(name_split) < 2: 
+		name_split = p_name.split('-', 2)
+	if len(name_split) < 2: 
+		p_name = name_split[0]
+	else: 
+		p_name = name_split[0] + "_" + name_split[1]
+	return p_name
+
+class Pulsar(): 
+	def __init__(self, p_name, epoch, dec, right_a, ref_frame='J2000'):
+		self.p_name = p_name
+		self.epoch = epoch
+		self.dec = dec
+		self.right_a = right_a
+		self.ref_frame = ref_frame
+
+		self.ra_per_yr = 0
+		self.dec_per_yr = 0
+		self.parallax = 0
+		self.magnitude = None
+		self.rv = '0.0000000000000000e+00'
+		self.p_id = 0
+
+	def saveToFile(self, root_directory):
+		# parse name
+		self.p_name = formatPulsarName(self.p_name)
+
+
+		# generate lines for file
+		##
+		lines = ['stk.v.12.0\n', 'WrittenBy    OpenXNAV\n\n', 'BEGIN Star\n\n']
+		lines.append('    Name		 ' + self.p_name + '\n\n')
+		lines.append('    BEGIN PathDescription\n\n')
+
+		lines.append('        Epoch		  ' + str(self.epoch) + '\n')
+
+		lines.append('        RefFrame		 ' + str(self.ref_frame) + '\n')
+
+		lines.append('        RightAscension		  ' + str(self.right_a) + '\n')
+
+		lines.append('        Declination		  ' + str(self.dec) + '\n')
+
+		# PMElong ?
+		lines.append('        ProperMotionRAPerYr		 ' + str(self.ra_per_yr) + '\n')
+
+		# PMElat ?
+		lines.append('        ProperMotionDecPerYr		 ' + str(self.dec_per_yr) + '\n')
+
+		lines.append('        Parallax		  ' + str(self.parallax) + '\n')
+
+		# VTrans ? 
+		lines.append('        RadialVelocity		  ' + str(self.rv) + '\n\n')
+
+		lines.append('    END PathDescription\n\n')
+		lines.append('    BEGIN PhysicalData\n\n')
+
+		lines.append('        Magnitude		  ' + str(self.magnitude) + "\n\n")
+
+		lines.append('    END PhysicalData\n\n')
+		lines.append('    BEGIN IdentityData\n\n')
+
+		lines.append('        Id		 ' + str(self.p_id) + "\n\n")
+
+		lines.append('    END IdentityData\n\n\n')
+
+		lines.append('    BEGIN Extensions\n\n')
+
+		lines.append('        BEGIN ExternData\n')
+		lines.append('        END ExternData\n\n')
+
+		lines.append('        BEGIN ADFFileData\n')
+		lines.append('        END ADFFileData\n\n')
+
+		lines.append('        BEGIN AccessConstraints\n')
+		lines.append('            LineOfSight IncludeIntervals\n\n')
+		lines.append('            UsePreferredMaxStep No\n')
+		lines.append('            PreferredMaxStep 360\n')
+		lines.append('        END AccessConstraints\n\n')
+
+		lines.append('        BEGIN Desc\n')
+		lines.append('        END Desc\n\n')
+
+		lines.append('        BEGIN Crdn\n')
+		lines.append('        END Crdn\n\n')
+
+		lines.append('        BEGIN Graphics\n\n')
+
+		lines.append('            BEGIN Attributes\n\n')
+		lines.append('                MarkerColor		 #00ff00\n')
+		lines.append('                LabelColor		 #00ff00\n')
+		lines.append('                MarkerStyle		 2\n')
+		lines.append('                FontStyle		 0\n\n')
+		lines.append('            END Attributes\n\n')
+
+		lines.append('            BEGIN Graphics\n\n')
+		lines.append('                Show		 On\n')
+		lines.append('                Inherit		 On\n')
+		lines.append('                ShowLabel		 On\n')
+		lines.append('                ShowMarker		 On\n\n')
+		lines.append('            END Graphics\n')
+		lines.append('        END Graphics\n\n')
+
+		lines.append('        BEGIN VO\n')
+		lines.append('        END VO\n\n')
+		lines.append('    END Extensions\n\n')
+		lines.append('END Star')
+
+		filename = root_directory + self.p_name + ".st"
+		with open(filename, 'w') as f:
+			for line in lines:
+				f.write(line)
+		f.close()

1_pulsar_querying/openXNAV-gui/query_results/L2_064114231956150/J0538_2817.st

@@ -0,0 +1,81 @@
+stk.v.12.0
+WrittenBy    TeamSpaceJunk
+
+BEGIN Star
+
+    Name		 J0538_2817
+
+    BEGIN PathDescription
+
+        Epoch		  51086.0
+        RefFrame		 J2000
+        RightAscension		  84.60440499999999
+        Declination		  +28:17:09.161
+        ProperMotionRAPerYr		 0
+        ProperMotionDecPerYr		 0
+        Parallax		  0
+        RadialVelocity		  0.0000000000000000e+00
+
+    END PathDescription
+
+    BEGIN PhysicalData
+
+        Magnitude		  None
+
+    END PhysicalData
+
+    BEGIN IdentityData
+
+        Id		 0
+
+    END IdentityData
+
+
+    BEGIN Extensions
+
+        BEGIN ExternData
+        END ExternData
+
+        BEGIN ADFFileData
+        END ADFFileData
+
+        BEGIN AccessConstraints
+            LineOfSight IncludeIntervals
+
+            UsePreferredMaxStep No
+            PreferredMaxStep 360
+        END AccessConstraints
+
+        BEGIN Desc
+        END Desc
+
+        BEGIN Crdn
+        END Crdn
+
+        BEGIN Graphics
+
+            BEGIN Attributes
+
+                MarkerColor		 #00ff00
+                LabelColor		 #00ff00
+                MarkerStyle		 2
+                FontStyle		 0
+
+            END Attributes
+
+            BEGIN Graphics
+
+                Show		 On
+                Inherit		 On
+                ShowLabel		 On
+                ShowMarker		 On
+
+            END Graphics
+        END Graphics
+
+        BEGIN VO
+        END VO
+
+    END Extensions
+
+END Star

1_pulsar_querying/openXNAV-gui/query_results/L2_064114231956150/J0543_2329.st

@@ -0,0 +1,81 @@
+stk.v.12.0
+WrittenBy    TeamSpaceJunk
+
+BEGIN Star
+
+    Name		 J0543_2329
+
+    BEGIN PathDescription
+
+        Epoch		  48892.0
+        RefFrame		 J2000
+        RightAscension		  85.79025
+        Declination		  23:29:05
+        ProperMotionRAPerYr		 0
+        ProperMotionDecPerYr		 0
+        Parallax		  0
+        RadialVelocity		  0.0000000000000000e+00
+
+    END PathDescription
+
+    BEGIN PhysicalData
+
+        Magnitude		  None
+
+    END PhysicalData
+
+    BEGIN IdentityData
+
+        Id		 0
+
+    END IdentityData
+
+
+    BEGIN Extensions
+
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