mirror of
https://github.com/JHUAPL/kaiju.git
synced 2026-01-10 07:38:00 -05:00
Removed all references to cheyenne.
This commit is contained in:
Eric Winter
@@ -4,10 +4,9 @@
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# version of the kaiju software.
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||||
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||||
# The lines starting with "#PBS" are directives for the PBS job control system,
|
||||
# used on pleiades, cheyenne, and derecho.
|
||||
# used on pleiades and derecho.
|
||||
|
||||
# On pleiades, this job should run in roughly 9 minutes of wall-clock time.
|
||||
# On cheyenne, this job should run in roughly 5 minutes of wall-clock time.
|
||||
# On derecho, this job should run in roughly 5 minutes of wall-clock time.
|
||||
|
||||
# Example usage
|
||||
@@ -16,7 +15,7 @@
|
||||
# IMPORTANT: You *must* do the following in the code below:
|
||||
# 1. Uncomment the #PBS lines for your system, comment out the #PBS lines
|
||||
# specific to other systems. Keep the common #PBS lines.
|
||||
# 2. (cheyenne and derecho only) Set the #PBS -A directive to your own account.
|
||||
# 2. (derecho only) Set the #PBS -A directive to your own account.
|
||||
# 3. Uncomment the modules lines for your system, comment out the others.
|
||||
# 4. Set kaiju_install_dir to your local kaiju installation.
|
||||
# 5. Set PATH to include your bin subdirectory of the build subdirectory of
|
||||
@@ -91,14 +90,6 @@
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||||
|
||||
#-----------------------------------------------------------------------------
|
||||
|
||||
# For the cheyenne system at UCAR:
|
||||
|
||||
##PBS -A UJHB0015
|
||||
##PBS -q regular
|
||||
##PBS -l select=4:ncpus=36:mpiprocs=2:ompthreads=18
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||||
|
||||
#-----------------------------------------------------------------------------
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||||
|
||||
# For the derecho system at UCAR:
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||||
|
||||
##PBS -A UJHB0019
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||||
@@ -137,16 +128,6 @@ module load comp-intel/2020.4.304 # Latest version
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||||
module load mpi-hpe/mpt.2.23
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||||
module load hdf5/1.8.18_mpt
|
||||
|
||||
# For cheyenne:
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||||
# module load cmake/3.22.0
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||||
# module load git/2.33.1 # Needed for git-lfs
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||||
# module load ncarenv/1.3
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||||
# module load intel/2022.1
|
||||
# module load geos/3.10.1 # Must come after intel/2022.1
|
||||
# module load ncarcompilers/0.5.0 # Must come after intel/2022.1
|
||||
# module load mpt/2.25
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||||
# module load hdf5-mpi/1.12.2
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||||
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||||
# For derecho:
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||||
# module load ncarenv/23.06
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||||
# module load cmake/3.26.3
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||||
@@ -207,7 +188,6 @@ export KMP_STACKSIZE=128M
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||||
# correctOMPenvironment.sh. Uncomment the line for your system, comment out the
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# rest.
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||||
export OMP_NUM_THREADS=28 # pleiades
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||||
# export OMP_NUM_THREADS=36 # cheyenne
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||||
# export OMP_NUM_THREADS=128 # derecho
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||||
|
||||
echo "The active environment variables are:"
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||||
@@ -234,8 +214,7 @@ echo "Running $exe on model $runid."
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||||
|
||||
# On derecho, the MPT implementation of MPI is not used, and so the omplace
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||||
# tool is not available. The pinCpuCores.sh script performs the same function
|
||||
# on derecho that correctOMPenvironment.sh and omplace perform on pleiades and
|
||||
# cheyenne.
|
||||
# on derecho that correctOMPenvironment.sh and omplace perform on pleiades.
|
||||
|
||||
# Uncomment the lines below appropriate to the system you are running on, and
|
||||
# comment out the others.
|
||||
@@ -244,10 +223,6 @@ echo "Running $exe on model $runid."
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||||
placer_cmd="$KAIJUHOME/scripts/preproc/correctOMPenvironment.sh $nodefile omplace"
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mpiexec $placer_cmd $exe $runid.xml >& ${exe}.${runid}.out
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||||
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||||
# cheyenne
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||||
# placer_cmd="$KAIJUHOME/scripts/preproc/correctOMPenvironment.sh $nodefile omplace"
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# mpiexec $placer_cmd $exe $runid.xml >& ${exe}.${runid}.out
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||||
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||||
# derecho
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||||
# placer_cmd="$KAIJUHOME/scripts/preproc/pinCpuCores.sh"
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||||
# mpiexec $placer_cmd $exe $runid.xml >& ${exe}.${runid}.out
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||||
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||||
@@ -4,10 +4,9 @@
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||||
# MPI version of the kaiju software.
|
||||
|
||||
# The lines starting with "#PBS" are directives for the PBS job control system,
|
||||
# used on pleiades, cheyenne, and derecho.
|
||||
# used on pleiades and derecho.
|
||||
|
||||
# On pleiades, this job should run in roughly 75 minutes of wall-clock time.
|
||||
# On cheyenne, this job should run in roughly 42 minutes of wall-clock time.
|
||||
# On derecho, this job should run in roughly 20 minutes of wall-clock time.
|
||||
|
||||
# Example usage
|
||||
@@ -16,7 +15,7 @@
|
||||
# IMPORTANT: You *must* do the following in the code below:
|
||||
# 1. Uncomment the #PBS lines for your system and model resolution, comment out
|
||||
# the #PBS lines specific to other cases. Keep the common #PBS lines.
|
||||
# 2. (cheyenne and derecho only) Set the #PBS -A directive to your own account.
|
||||
# 2. (derecho only) Set the #PBS -A directive to your own account.
|
||||
# 3. Uncomment the modules lines for your system, comment out the others.
|
||||
# 4. Set kaiju_install_dir to your local kaiju installation.
|
||||
# 5. Set PATH to include your bin subdirectory of the build subdirectory of
|
||||
@@ -101,14 +100,6 @@
|
||||
|
||||
#-----------------------------------------------------------------------------
|
||||
|
||||
# For the cheyenne system at UCAR:
|
||||
|
||||
##PBS -A UJHB0015
|
||||
##PBS -q regular
|
||||
##PBS -l select=2:ncpus=36:mpiprocs=2:ompthreads=18+1:ncpus=36:mpiprocs=1:ompthreads=36
|
||||
|
||||
#-----------------------------------------------------------------------------
|
||||
|
||||
# For the derecho system at UCAR:
|
||||
|
||||
##PBS -A UJHB0019
|
||||
@@ -151,16 +142,6 @@ module load comp-intel/2020.4.304 # Latest version
|
||||
module load mpi-hpe/mpt.2.23
|
||||
module load hdf5/1.8.18_mpt
|
||||
|
||||
# For cheyenne:
|
||||
# module load cmake/3.22.0
|
||||
# module load git/2.33.1 # Needed for git-lfs
|
||||
# module load ncarenv/1.3
|
||||
# module load intel/2022.1
|
||||
# module load geos/3.10.1 # Must come after intel/2022.1
|
||||
# module load ncarcompilers/0.5.0 # Must come after intel/2022.1
|
||||
# module load mpt/2.25
|
||||
# module load hdf5-mpi/1.12.2
|
||||
|
||||
# For derecho:
|
||||
# module load ncarenv/23.06
|
||||
# module load cmake/3.26.3
|
||||
@@ -221,7 +202,6 @@ export KMP_STACKSIZE=128M
|
||||
# correctOMPenvironment.sh. Uncomment the line for your system, comment out the
|
||||
# rest.
|
||||
export OMP_NUM_THREADS=28 # pleiades
|
||||
# export OMP_NUM_THREADS=36 # cheyenne
|
||||
# export OMP_NUM_THREADS=128 # derecho
|
||||
|
||||
echo "The active environment variables are:"
|
||||
@@ -248,8 +228,7 @@ echo "Running $exe on model $runid."
|
||||
|
||||
# On derecho, the MPT implementation of MPI is not used, and so the omplace
|
||||
# tool is not available. The pinCpuCores.sh script performs the same function
|
||||
# on derecho that correctOMPenvironment.sh and omplace perform on pleiades and
|
||||
# cheyenne.
|
||||
# on derecho that correctOMPenvironment.sh and omplace perform on pleiades.
|
||||
|
||||
# Uncomment the lines below appropriate to the system you are running on, and
|
||||
# comment out the others.
|
||||
@@ -258,10 +237,6 @@ echo "Running $exe on model $runid."
|
||||
placer_cmd="$KAIJUHOME/scripts/preproc/correctOMPenvironment.sh $nodefile omplace"
|
||||
mpiexec $placer_cmd $exe $runid.xml >& ${exe}.${runid}.out
|
||||
|
||||
# cheyenne
|
||||
# placer_cmd="$KAIJUHOME/scripts/preproc/correctOMPenvironment.sh $nodefile omplace"
|
||||
# mpiexec $placer_cmd $exe $runid.xml >& ${exe}.${runid}.out
|
||||
|
||||
# derecho
|
||||
# placer_cmd="$KAIJUHOME/scripts/preproc/pinCpuCores.sh"
|
||||
# mpiexec $placer_cmd $exe $runid.xml >& ${exe}.${runid}.out
|
||||
|
||||
@@ -4,10 +4,9 @@
|
||||
# the serial version of the kaiju software.
|
||||
|
||||
# The lines starting with "#PBS" are directives for the PBS job control
|
||||
# system, used on pleiades, cheyenne, and derecho.
|
||||
# system, used on pleiades and derecho.
|
||||
|
||||
# On pleiades, this job should run in roughly 82 minutes of wall-clock time.
|
||||
# On cheyenne, this job should run in roughly 67 minutes of wall-clock time.
|
||||
# On derecho, this job should run in roughly 37 minutes of wall-clock time.
|
||||
|
||||
# Example usage
|
||||
@@ -16,7 +15,7 @@
|
||||
# IMPORTANT: You *must* do the following in the code below:
|
||||
# 1. Uncomment the #PBS lines for your system, comment out the #PBS lines
|
||||
# specific to other systems. Keep the common #PBS lines.
|
||||
# 2. (cheyenne and derecho only) Set the #PBS -A directive to your own account.
|
||||
# 2. (derecho only) Set the #PBS -A directive to your own account.
|
||||
# 3. Uncomment the modules lines for your system, comment out the others.
|
||||
# 4. Set kaiju_install_dir to your local kaiju installation.
|
||||
# 5. Set PATH to include your bin subdirectory of the build subdirectory of
|
||||
@@ -77,15 +76,6 @@
|
||||
|
||||
#-----------------------------------------------------------------------------
|
||||
|
||||
# For the cheyenne system at UCAR:
|
||||
|
||||
# You *must* set the -A directive to your account number.
|
||||
##PBS -A UJHB0015
|
||||
##PBS -q regular
|
||||
##PBS -l select=1:ncpus=36:ompthreads=36
|
||||
|
||||
#-----------------------------------------------------------------------------
|
||||
|
||||
# For the derecho system at UCAR:
|
||||
|
||||
# You *must* set the -A directive to your account number.
|
||||
@@ -124,15 +114,6 @@ module load pkgsrc/2022Q1-rome # For git-lfs and cmake
|
||||
module load comp-intel/2020.4.304 # Latest version
|
||||
module load hdf5/1.8.18_serial
|
||||
|
||||
# For cheyenne:
|
||||
# module load cmake/3.22.0
|
||||
# module load git/2.33.1 # Needed for git-lfs
|
||||
# module load ncarenv/1.3
|
||||
# module load intel/2022.1
|
||||
# module load geos/3.10.1 # Must come after intel/2022.1
|
||||
# module load ncarcompilers/0.5.0 # Must come after intel/2022.1
|
||||
# module load hdf5/1.12.2
|
||||
|
||||
# For derecho:
|
||||
# module load ncarenv/23.06
|
||||
# module load craype/2.7.20
|
||||
|
||||
@@ -4,10 +4,9 @@
|
||||
# the MPI version of the kaiju software.
|
||||
|
||||
# The lines starting with "#PBS" are directives for the PBS job control system,
|
||||
# used on pleiades, cheyenne, and derecho.
|
||||
# used on pleiades and derecho.
|
||||
|
||||
# On pleiades, this job should run in roughly 75 minutes of wall-clock time.
|
||||
# On cheyenne, this job should run in roughly 10 minutes of wall-clock time.
|
||||
# On derecho, this job should run in roughly 7 minutes of wall-clock time.
|
||||
|
||||
# Example usage
|
||||
@@ -16,7 +15,7 @@
|
||||
# IMPORTANT: You *must* do the following in the code below:
|
||||
# 1. Uncomment the #PBS lines for your system and model resolution, comment out
|
||||
# the #PBS lines specific to other cases. Keep the common #PBS lines.
|
||||
# 2. (cheyenne and derecho only) Set the #PBS -A directive to your own account.
|
||||
# 2. (derecho only) Set the #PBS -A directive to your own account.
|
||||
# 3. Uncomment the modules lines for your system, comment out the others.
|
||||
# 4. Set kaiju_install_dir to your local kaiju installation.
|
||||
# 5. Set PATH to include your bin subdirectory of the build subdirectory of
|
||||
@@ -96,14 +95,6 @@
|
||||
|
||||
#-----------------------------------------------------------------------------
|
||||
|
||||
# For the cheyenne system at UCAR:
|
||||
|
||||
##PBS -A UJHB0015
|
||||
##PBS -q regular
|
||||
##PBS -l select=4:ncpus=36:mpiprocs=2:ompthreads=18
|
||||
|
||||
#-----------------------------------------------------------------------------
|
||||
|
||||
# For the derecho system at UCAR:
|
||||
|
||||
##PBS -A UJHB0019
|
||||
@@ -142,16 +133,6 @@ module load comp-intel/2020.4.304 # Latest version
|
||||
module load mpi-hpe/mpt.2.23
|
||||
module load hdf5/1.8.18_mpt
|
||||
|
||||
# For cheyenne:
|
||||
# module load cmake/3.22.0
|
||||
# module load git/2.33.1 # Needed for git-lfs
|
||||
# module load ncarenv/1.3
|
||||
# module load intel/2022.1
|
||||
# module load geos/3.10.1 # Must come after intel/2022.1
|
||||
# module load ncarcompilers/0.5.0 # Must come after intel/2022.1
|
||||
# module load mpt/2.25
|
||||
# module load hdf5-mpi/1.12.2
|
||||
|
||||
# For derecho:
|
||||
# module load ncarenv/23.06
|
||||
# module load cmake/3.26.3
|
||||
@@ -212,7 +193,6 @@ export KMP_STACKSIZE=128M
|
||||
# correctOMPenvironment.sh. Uncomment the line for your system, comment out the
|
||||
# rest.
|
||||
export OMP_NUM_THREADS=28 # pleiades
|
||||
# export OMP_NUM_THREADS=36 # cheyenne
|
||||
# export OMP_NUM_THREADS=128 # derecho
|
||||
|
||||
echo "The active environment variables are:"
|
||||
@@ -239,8 +219,7 @@ echo "Running $exe on model $runid."
|
||||
|
||||
# On derecho, the MPT implementation of MPI is not used, and so the omplace
|
||||
# tool is not available. The pinCpuCores.sh script performs the same function
|
||||
# on derecho that correctOMPenvironment.sh and omplace perform on pleiades and
|
||||
# cheyenne.
|
||||
# on derecho that correctOMPenvironment.sh and omplace perform on pleiades.
|
||||
|
||||
# Uncomment the lines below appropriate to the system you are running on, and
|
||||
# comment out the others.
|
||||
@@ -249,10 +228,6 @@ echo "Running $exe on model $runid."
|
||||
placer_cmd="$KAIJUHOME/scripts/preproc/correctOMPenvironment.sh $nodefile omplace"
|
||||
mpiexec $placer_cmd $exe $runid.xml >& ${exe}.${runid}.out
|
||||
|
||||
# cheyenne
|
||||
# placer_cmd="$KAIJUHOME/scripts/preproc/correctOMPenvironment.sh $nodefile omplace"
|
||||
# mpiexec $placer_cmd $exe $runid.xml >& ${exe}.${runid}.out
|
||||
|
||||
# derecho
|
||||
# placer_cmd="$KAIJUHOME/scripts/preproc/pinCpuCores.sh"
|
||||
# mpiexec $placer_cmd $exe $runid.xml >& ${exe}.${runid}.out
|
||||
|
||||
@@ -4,10 +4,9 @@
|
||||
# using the serial version of the kaiju software.
|
||||
|
||||
# The lines starting with "#PBS" are directives for the PBS job control
|
||||
# system, used on pleiades, cheyenne, and derecho.
|
||||
# system, used on pleiades and derecho.
|
||||
|
||||
# On pleiades, this job should run in roughly 110 minutes of wall-clock time.
|
||||
# On cheyenne, this job should run in roughly 101 minutes of wall-clock time.
|
||||
# On derecho, this job should run in roughly 137 minutes of wall-clock time.
|
||||
|
||||
# Example usage
|
||||
@@ -16,7 +15,7 @@
|
||||
# IMPORTANT: You *must* do the following in the code below:
|
||||
# 1. Uncomment the #PBS lines for your system, comment out the #PBS lines
|
||||
# specific to other systems. Keep the common #PBS lines.
|
||||
# 2. (cheyenne and derecho only) Set the #PBS -A directive to your own account.
|
||||
# 2. (derecho only) Set the #PBS -A directive to your own account.
|
||||
# 3. Uncomment the modules lines for your system, comment out the others.
|
||||
# 4. Set kaiju_install_dir to your local kaiju installation.
|
||||
# 5. Set PATH to include your bin subdirectory of the build subdirectory of
|
||||
@@ -77,15 +76,6 @@
|
||||
|
||||
#-----------------------------------------------------------------------------
|
||||
|
||||
# For the cheyenne system at UCAR:
|
||||
|
||||
# You *must* set the -A directive to your account number.
|
||||
##PBS -A UJHB0015
|
||||
##PBS -q regular
|
||||
##PBS -l select=1:ncpus=36:ompthreads=36
|
||||
|
||||
#-----------------------------------------------------------------------------
|
||||
|
||||
# For the derecho system at UCAR:
|
||||
|
||||
# You *must* set the -A directive to your account number.
|
||||
@@ -124,15 +114,6 @@ module load pkgsrc/2022Q1-rome # For git-lfs and cmake
|
||||
module load comp-intel/2020.4.304 # Latest version
|
||||
module load hdf5/1.8.18_serial
|
||||
|
||||
# For cheyenne:
|
||||
# module load cmake/3.22.0
|
||||
# module load git/2.33.1 # Needed for git-lfs
|
||||
# module load ncarenv/1.3
|
||||
# module load intel/2022.1
|
||||
# module load geos/3.10.1 # Must come after intel/2022.1
|
||||
# module load ncarcompilers/0.5.0 # Must come after intel/2022.1
|
||||
# module load hdf5/1.12.2
|
||||
|
||||
# For derecho:
|
||||
# module load ncarenv/23.06
|
||||
# module load craype/2.7.20
|
||||
|
||||
@@ -4,10 +4,9 @@
|
||||
# serial version of the kaiju software.
|
||||
|
||||
# The lines starting with "#PBS" are directives for the PBS job control
|
||||
# system, used on pleiades, cheyenne, and derecho.
|
||||
# system, used on pleiades and derecho.
|
||||
|
||||
# On pleiades, this job should run in roughly 1 minute of wall-clock time.
|
||||
# On cheyenne, this job should run in roughly 1 minute of wall-clock time.
|
||||
# On derecho, this job should run in roughly 1 minute of wall-clock time.
|
||||
|
||||
# Example usage
|
||||
@@ -16,7 +15,7 @@
|
||||
# IMPORTANT: You *must* do the following:
|
||||
# 1. Uncomment the #PBS lines for your system, comment out the #PBS lines
|
||||
# specific to other systems. Keep the common #PBS lines.
|
||||
# 2. (cheyenne and derecho only) Set the #PBS -A directive to your own account.
|
||||
# 2. (derecho only) Set the #PBS -A directive to your own account.
|
||||
# 3. Uncomment the modules lines for your system, comment out the others.
|
||||
# 4. Set kaiju_install_dir to your local kaiju installation.
|
||||
# 5. Set PATH to include your bin subdirectory of the build subdirectory of
|
||||
@@ -77,15 +76,6 @@
|
||||
|
||||
#-----------------------------------------------------------------------------
|
||||
|
||||
# For the cheyenne system at UCAR:
|
||||
|
||||
# You *must* set the -A directive to your account number.
|
||||
##PBS -A UJHB0015
|
||||
##PBS -q regular
|
||||
##PBS -l select=1:ncpus=36:ompthreads=36
|
||||
|
||||
#-----------------------------------------------------------------------------
|
||||
|
||||
# For the derecho system at UCAR:
|
||||
|
||||
# You *must* set the -A directive to your account number.
|
||||
@@ -124,15 +114,6 @@ module load pkgsrc/2022Q1-rome # For git-lfs and cmake
|
||||
module load comp-intel/2020.4.304 # Latest version
|
||||
module load hdf5/1.8.18_serial
|
||||
|
||||
# For cheyenne:
|
||||
# module load cmake/3.22.0
|
||||
# module load git/2.33.1 # Needed for git-lfs
|
||||
# module load ncarenv/1.3
|
||||
# module load intel/2022.1
|
||||
# module load geos/3.10.1 # Must come after intel/2022.1
|
||||
# module load ncarcompilers/0.5.0 # Must come after intel/2022.1
|
||||
# module load hdf5/1.12.2
|
||||
|
||||
# For derecho:
|
||||
# module load ncarenv/23.06
|
||||
# module load craype/2.7.20
|
||||
|
||||
Reference in New Issue
Block a user