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Adding comments and some error checking

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This commit is contained in:
Jeffrey Garretson
2022-01-31 14:07:36 -07:00
parent 97a02a527c
commit 40fb047c73
1 changed files with 17 additions and 0 deletions
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17
places/cheyenne/RunMpi.pbs
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@@ -20,12 +20,29 @@ mkdir -p $TMPDIR
#Optional stuff to load an environment
source ~/.bashrc
if [[ -z "$KAIJUHOME" ]]; then
# $KAIJUHOME environment variable is not set
echo "The KAIJUHOME environment variable is not set"
echo "You must either pass your environment with the -V option or"
echo " execute the kaiju/scripts/setupEnvironment script in your ~/.bashrc file"
exit
fi
if [[ ! -z "$MODULE_LIST" ]]; then
# user passed a list of modules to load as the environment variable MODULE_LIST
# call this with the flag '-v MODULE_LIST="<modules>"' to use this option
# where <modules> is a space-separated list of modules in quotes
# Example:
# qsub -v MODULE_LIST="intel/2021.2 ncarenv/1.3 ncarcompilers/0.5.0 mpt/2.22" RunMpi.pbs
module purge
module load $MODULE_LIST
elif [[ ! -z "$MODULE_SET" ]]; then
# user passed a module set name to load as the environment variable MODULE_SET
# call this with the flag '-v MODULE_SET=<set name>' to use this option
# where <set_name> is a saved set of modules, as printed by 'module savelist'
# Example:
# qsub -v MODULE_SET=kaiju21 RunMpi.pbs
module purge
module restore $MODULE_SET
else