Merge remote-tracking branch 'origin/dev' into feat/github-cli-copilot

The `@@agptfile:` expansion system previously used content-sniffing
(trying
`json.loads` then `csv.Sniffer`) to decide whether to parse file content
as
structured data. This was fragile — a file containing just `"42"` would
be
parsed as an integer, and the heuristics could misfire on ambiguous
content.

This PR replaces content-sniffing with **extension/MIME-based format
detection**.
When the file has a well-known extension (`.json`, `.csv`, etc.) or MIME
type
fragment (`workspace://id#application/json`), the content is parsed
accordingly.
Unknown formats or parse failures always fall back to plain string — no
surprises.

> [!NOTE]
> This PR builds on the `@@agptfile:` file reference protocol introduced
in #12332 and the structured data auto-parsing added in #12390.
>
> **What is `@@agptfile:`?**
> It is a special URI prefix (e.g. `@@agptfile:workspace:///report.csv`)
that the CoPilot SDK expands inline before sending tool arguments to
blocks. This lets the AI reference workspace files by name, and the SDK
automatically reads and injects the file content. See #12332 for the
full design.

### Changes 🏗️

**New utility: `backend/util/file_content_parser.py`**
- `infer_format(uri)` — determines format from file extension or MIME
fragment
- `parse_file_content(content, fmt)` — parses content, never raises
- Supported text formats: JSON, JSONL/NDJSON, CSV, TSV, YAML, TOML
- Supported binary formats: Parquet (via pyarrow), Excel/XLSX (via
openpyxl)
- JSON scalars (strings, numbers, booleans, null) stay as strings — only
  containers (arrays, objects) are promoted
- CSV/TSV require ≥1 row and ≥2 columns to qualify as tabular data
- Added `openpyxl` dependency for Excel reading via pandas
- Case-insensitive MIME fragment matching per RFC 2045
- Shared `PARSE_EXCEPTIONS` constant to avoid duplication between
modules

**Updated `expand_file_refs_in_args` in `file_ref.py`**
- Bare refs now use `infer_format` + `parse_file_content` instead of the
  old `_try_parse_structured` content-sniffing function
- Binary formats (parquet, xlsx) read raw bytes via `read_file_bytes`
- Embedded refs (text around `@@agptfile:`) still produce plain strings
- **Size guards**: Workspace and sandbox file reads now enforce a 10 MB
limit
  (matching the existing local file limit) to prevent OOM on large files

**Updated `blocks/github/commits.py`**
- Consolidated `_create_blob` and `_create_binary_blob` into a single
function
  with an `encoding` parameter

**Updated copilot system prompt**
- Documents the extension-based structured data parsing and supported
formats

**66 new tests** in `file_content_parser_test.py` covering:
- Format inference (extension, MIME, case-insensitive, precedence)
- All 8 format parsers (happy path + edge cases + fallbacks)
- Binary format handling (string input fallback, invalid bytes fallback)
- Unknown format passthrough

### Checklist 📋

#### For code changes:
- [x] I have clearly listed my changes in the PR description
- [x] I have made a test plan
- [x] I have tested my changes according to the test plan:
  - [x] All 66 file_content_parser_test.py tests pass
  - [x] All 31 file_ref_test.py tests pass
  - [x] All 13 file_ref_integration_test.py tests pass
  - [x] `poetry run format` passes clean (including pyright)

autogpt_platform/backend/backend/blocks/github/commits.py

@@ -11,7 +11,10 @@ from backend.blocks._base import (
     BlockSchemaInput,
     BlockSchemaOutput,
 )
+from backend.data.execution import ExecutionContext
 from backend.data.model import SchemaField
+from backend.util.file import parse_data_uri, resolve_media_content
+from backend.util.type import MediaFileType
 
 from ._api import get_api
 from ._auth import (
@@ -178,7 +181,8 @@ class FileOperation(StrEnum):
 
 class FileOperationInput(TypedDict):
     path: str
-    content: str
+    # MediaFileType is a str NewType — no runtime breakage for existing callers.
+    content: MediaFileType
     operation: FileOperation
 
 
@@ -275,11 +279,11 @@ class GithubMultiFileCommitBlock(Block):
         base_tree_sha = commit_data["tree"]["sha"]
 
         # 3. Build tree entries for each file operation (blobs created concurrently)
-        async def _create_blob(content: str) -> str:
+        async def _create_blob(content: str, encoding: str = "utf-8") -> str:
             blob_url = repo_url + "/git/blobs"
             blob_response = await api.post(
                 blob_url,
-                json={"content": content, "encoding": "utf-8"},
+                json={"content": content, "encoding": encoding},
             )
             return blob_response.json()["sha"]
 
@@ -301,10 +305,19 @@ class GithubMultiFileCommitBlock(Block):
             else:
                 upsert_files.append((path, file_op.get("content", "")))
 
-        # Create all blobs concurrently
+        # Create all blobs concurrently. Data URIs (from store_media_file)
+        # are sent as base64 blobs to preserve binary content.
         if upsert_files:
+
+            async def _make_blob(content: str) -> str:
+                parsed = parse_data_uri(content)
+                if parsed is not None:
+                    _, b64_payload = parsed
+                    return await _create_blob(b64_payload, encoding="base64")
+                return await _create_blob(content)
+
             blob_shas = await asyncio.gather(
-                *[_create_blob(content) for _, content in upsert_files]
+                *[_make_blob(content) for _, content in upsert_files]
             )
             for (path, _), blob_sha in zip(upsert_files, blob_shas):
                 tree_entries.append(
@@ -358,15 +371,36 @@ class GithubMultiFileCommitBlock(Block):
         input_data: Input,
         *,
         credentials: GithubCredentials,
+        execution_context: ExecutionContext,
         **kwargs,
     ) -> BlockOutput:
         try:
+            # Resolve media references (workspace://, data:, URLs) to data
+            # URIs so _make_blob can send binary content correctly.
+            resolved_files: list[FileOperationInput] = []
+            for file_op in input_data.files:
+                content = file_op.get("content", "")
+                operation = FileOperation(file_op.get("operation", "upsert"))
+                if operation != FileOperation.DELETE:
+                    content = await resolve_media_content(
+                        MediaFileType(content),
+                        execution_context,
+                        return_format="for_external_api",
+                    )
+                resolved_files.append(
+                    FileOperationInput(
+                        path=file_op["path"],
+                        content=MediaFileType(content),
+                        operation=operation,
+                    )
+                )
+
             sha, url = await self.multi_file_commit(
                 credentials,
                 input_data.repo_url,
                 input_data.branch,
                 input_data.commit_message,
-                input_data.files,
+                resolved_files,
             )
             yield "sha", sha
             yield "url", url

autogpt_platform/backend/backend/blocks/github/test_github_blocks.py

@@ -8,6 +8,7 @@ from backend.blocks.github.pull_requests import (
     GithubMergePullRequestBlock,
     prepare_pr_api_url,
 )
+from backend.data.execution import ExecutionContext
 from backend.util.exceptions import BlockExecutionError
 
 # ── prepare_pr_api_url tests ──
@@ -97,7 +98,11 @@ async def test_multi_file_commit_error_path():
         "credentials": TEST_CREDENTIALS_INPUT,
     }
     with pytest.raises(BlockExecutionError, match="ref update failed"):
-        async for _ in block.execute(input_data, credentials=TEST_CREDENTIALS):
+        async for _ in block.execute(
+            input_data,
+            credentials=TEST_CREDENTIALS,
+            execution_context=ExecutionContext(),
+        ):
             pass
 
 

autogpt_platform/backend/backend/copilot/context.py

@@ -11,6 +11,8 @@ from contextvars import ContextVar
 from typing import TYPE_CHECKING
 
 from backend.copilot.model import ChatSession
+from backend.data.db_accessors import workspace_db
+from backend.util.workspace import WorkspaceManager
 
 if TYPE_CHECKING:
     from e2b import AsyncSandbox
@@ -82,6 +84,17 @@ def resolve_sandbox_path(path: str) -> str:
     return normalized
 
 
+async def get_workspace_manager(user_id: str, session_id: str) -> WorkspaceManager:
+    """Create a session-scoped :class:`WorkspaceManager`.
+
+    Placed here (rather than in ``tools/workspace_files``) so that modules
+    like ``sdk/file_ref`` can import it without triggering the heavy
+    ``tools/__init__`` import chain.
+    """
+    workspace = await workspace_db().get_or_create_workspace(user_id)
+    return WorkspaceManager(user_id, workspace.id, session_id)
+
+
 def is_allowed_local_path(path: str, sdk_cwd: str | None = None) -> bool:
     """Return True if *path* is within an allowed host-filesystem location.
 

autogpt_platform/backend/backend/copilot/integration_creds.py

@@ -0,0 +1,162 @@
+"""Integration credential lookup with per-process TTL cache.
+
+Provides token retrieval for connected integrations so that copilot tools
+(e.g. bash_exec) can inject auth tokens into the execution environment without
+hitting the database on every command.
+
+Cache semantics (handled automatically by TTLCache):
+- Token found → cached for _TOKEN_CACHE_TTL (5 min).  Avoids repeated DB hits
+  for users who have credentials and are running many bash commands.
+- No credentials found → cached for _NULL_CACHE_TTL (60 s).  Avoids a DB hit
+  on every E2B command for users who haven't connected an account yet, while
+  still picking up a newly-connected account within one minute.
+
+Both caches are bounded to _CACHE_MAX_SIZE entries; cachetools evicts the
+least-recently-used entry when the limit is reached.
+
+Multi-worker note: both caches are in-process only.  Each worker/replica
+maintains its own independent cache, so a credential fetch may be duplicated
+across processes.  This is acceptable for the current goal (reduce DB hits per
+session per-process), but if cache efficiency across replicas becomes important
+a shared cache (e.g. Redis) should be used instead.
+"""
+
+import logging
+from typing import cast
+
+from cachetools import TTLCache
+
+from backend.data.model import APIKeyCredentials, OAuth2Credentials
+from backend.integrations.creds_manager import (
+    IntegrationCredentialsManager,
+    register_creds_changed_hook,
+)
+
+logger = logging.getLogger(__name__)
+
+# Maps provider slug → env var names to inject when the provider is connected.
+# Add new providers here when adding integration support.
+# NOTE: keep in sync with connect_integration._PROVIDER_INFO — both registries
+# must be updated when adding a new provider.
+PROVIDER_ENV_VARS: dict[str, list[str]] = {
+    "github": ["GH_TOKEN", "GITHUB_TOKEN"],
+}
+
+_TOKEN_CACHE_TTL = 300.0  # seconds — for found tokens
+_NULL_CACHE_TTL = 60.0  # seconds — for "not connected" results
+_CACHE_MAX_SIZE = 10_000
+
+# (user_id, provider) → token string.  TTLCache handles expiry + eviction.
+# Thread-safety note: TTLCache is NOT thread-safe, but that is acceptable here
+# because all callers (get_provider_token, invalidate_user_provider_cache) run
+# exclusively on the asyncio event loop.  There are no await points between a
+# cache read and its corresponding write within any function, so no concurrent
+# coroutine can interleave.  If ThreadPoolExecutor workers are ever added to
+# this path, a threading.RLock should be wrapped around these caches.
+_token_cache: TTLCache[tuple[str, str], str] = TTLCache(
+    maxsize=_CACHE_MAX_SIZE, ttl=_TOKEN_CACHE_TTL
+)
+# Separate cache for "no credentials" results with a shorter TTL.
+_null_cache: TTLCache[tuple[str, str], bool] = TTLCache(
+    maxsize=_CACHE_MAX_SIZE, ttl=_NULL_CACHE_TTL
+)
+
+
+def invalidate_user_provider_cache(user_id: str, provider: str) -> None:
+    """Remove the cached entry for *user_id*/*provider* from both caches.
+
+    Call this after storing new credentials so that the next
+    ``get_provider_token()`` call performs a fresh DB lookup instead of
+    serving a stale TTL-cached result.
+    """
+    key = (user_id, provider)
+    _token_cache.pop(key, None)
+    _null_cache.pop(key, None)
+
+
+# Register this module's cache-bust function with the credentials manager so
+# that any create/update/delete operation immediately evicts stale cache
+# entries.  This avoids a lazy import inside creds_manager and eliminates the
+# circular-import risk.
+register_creds_changed_hook(invalidate_user_provider_cache)
+
+# Module-level singleton to avoid re-instantiating IntegrationCredentialsManager
+# on every cache-miss call to get_provider_token().
+_manager = IntegrationCredentialsManager()
+
+
+async def get_provider_token(user_id: str, provider: str) -> str | None:
+    """Return the user's access token for *provider*, or ``None`` if not connected.
+
+    OAuth2 tokens are preferred (refreshed if needed); API keys are the fallback.
+    Found tokens are cached for _TOKEN_CACHE_TTL (5 min).  "Not connected" results
+    are cached for _NULL_CACHE_TTL (60 s) to avoid a DB hit on every bash_exec
+    command for users who haven't connected yet, while still picking up a
+    newly-connected account within one minute.
+    """
+    cache_key = (user_id, provider)
+
+    if cache_key in _null_cache:
+        return None
+    if cached := _token_cache.get(cache_key):
+        return cached
+
+    manager = _manager
+    try:
+        creds_list = await manager.store.get_creds_by_provider(user_id, provider)
+    except Exception:
+        logger.debug("Failed to fetch %s credentials for user %s", provider, user_id)
+        return None
+
+    # Pass 1: prefer OAuth2 (carry scope info, refreshable via token endpoint).
+    # Sort so broader-scoped tokens come first: a token with "repo" scope covers
+    # full git access, while a public-data-only token lacks push/pull permission.
+    # lock=False — background injection; not worth a distributed lock acquisition.
+    oauth2_creds = sorted(
+        [c for c in creds_list if c.type == "oauth2"],
+        key=lambda c: 0 if "repo" in (cast(OAuth2Credentials, c).scopes or []) else 1,
+    )
+    for creds in oauth2_creds:
+        if creds.type == "oauth2":
+            try:
+                fresh = await manager.refresh_if_needed(
+                    user_id, cast(OAuth2Credentials, creds), lock=False
+                )
+                token = fresh.access_token.get_secret_value()
+            except Exception:
+                logger.warning(
+                    "Failed to refresh %s OAuth token for user %s; "
+                    "falling back to potentially stale token",
+                    provider,
+                    user_id,
+                )
+                token = cast(OAuth2Credentials, creds).access_token.get_secret_value()
+            _token_cache[cache_key] = token
+            return token
+
+    # Pass 2: fall back to API key (no expiry, no refresh needed).
+    for creds in creds_list:
+        if creds.type == "api_key":
+            token = cast(APIKeyCredentials, creds).api_key.get_secret_value()
+            _token_cache[cache_key] = token
+            return token
+
+    # No credentials found — cache to avoid repeated DB hits.
+    _null_cache[cache_key] = True
+    return None
+
+
+async def get_integration_env_vars(user_id: str) -> dict[str, str]:
+    """Return env vars for all providers the user has connected.
+
+    Iterates :data:`PROVIDER_ENV_VARS`, fetches each token, and builds a flat
+    ``{env_var: token}`` dict ready to pass to a subprocess or E2B sandbox.
+    Only providers with a stored credential contribute entries.
+    """
+    env: dict[str, str] = {}
+    for provider, var_names in PROVIDER_ENV_VARS.items():
+        token = await get_provider_token(user_id, provider)
+        if token:
+            for var in var_names:
+                env[var] = token
+    return env

autogpt_platform/backend/backend/copilot/integration_creds_test.py

@@ -0,0 +1,193 @@
+"""Tests for integration_creds — TTL cache and token lookup paths."""
+
+from unittest.mock import AsyncMock, MagicMock, patch
+
+import pytest
+from pydantic import SecretStr
+
+from backend.copilot.integration_creds import (
+    _NULL_CACHE_TTL,
+    _TOKEN_CACHE_TTL,
+    PROVIDER_ENV_VARS,
+    _null_cache,
+    _token_cache,
+    get_integration_env_vars,
+    get_provider_token,
+    invalidate_user_provider_cache,
+)
+from backend.data.model import APIKeyCredentials, OAuth2Credentials
+
+_USER = "user-integration-creds-test"
+_PROVIDER = "github"
+
+
+def _make_api_key_creds(key: str = "test-api-key") -> APIKeyCredentials:
+    return APIKeyCredentials(
+        id="creds-api-key",
+        provider=_PROVIDER,
+        api_key=SecretStr(key),
+        title="Test API Key",
+        expires_at=None,
+    )
+
+
+def _make_oauth2_creds(token: str = "test-oauth-token") -> OAuth2Credentials:
+    return OAuth2Credentials(
+        id="creds-oauth2",
+        provider=_PROVIDER,
+        title="Test OAuth",
+        access_token=SecretStr(token),
+        refresh_token=SecretStr("test-refresh"),
+        access_token_expires_at=None,
+        refresh_token_expires_at=None,
+        scopes=[],
+    )
+
+
+@pytest.fixture(autouse=True)
+def clear_caches():
+    """Ensure clean caches before and after every test."""
+    _token_cache.clear()
+    _null_cache.clear()
+    yield
+    _token_cache.clear()
+    _null_cache.clear()
+
+
+class TestInvalidateUserProviderCache:
+    def test_removes_token_entry(self):
+        key = (_USER, _PROVIDER)
+        _token_cache[key] = "tok"
+        invalidate_user_provider_cache(_USER, _PROVIDER)
+        assert key not in _token_cache
+
+    def test_removes_null_entry(self):
+        key = (_USER, _PROVIDER)
+        _null_cache[key] = True
+        invalidate_user_provider_cache(_USER, _PROVIDER)
+        assert key not in _null_cache
+
+    def test_noop_when_key_not_cached(self):
+        # Should not raise even when there is no cache entry.
+        invalidate_user_provider_cache("no-such-user", _PROVIDER)
+
+    def test_only_removes_targeted_key(self):
+        other_key = ("other-user", _PROVIDER)
+        _token_cache[other_key] = "other-tok"
+        invalidate_user_provider_cache(_USER, _PROVIDER)
+        assert other_key in _token_cache
+
+
+class TestGetProviderToken:
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_returns_cached_token_without_db_hit(self):
+        _token_cache[(_USER, _PROVIDER)] = "cached-tok"
+
+        mock_manager = MagicMock()
+        with patch("backend.copilot.integration_creds._manager", mock_manager):
+            result = await get_provider_token(_USER, _PROVIDER)
+
+        assert result == "cached-tok"
+        mock_manager.store.get_creds_by_provider.assert_not_called()
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_returns_none_for_null_cached_provider(self):
+        _null_cache[(_USER, _PROVIDER)] = True
+
+        mock_manager = MagicMock()
+        with patch("backend.copilot.integration_creds._manager", mock_manager):
+            result = await get_provider_token(_USER, _PROVIDER)
+
+        assert result is None
+        mock_manager.store.get_creds_by_provider.assert_not_called()
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_api_key_creds_returned_and_cached(self):
+        api_creds = _make_api_key_creds("my-api-key")
+        mock_manager = MagicMock()
+        mock_manager.store.get_creds_by_provider = AsyncMock(return_value=[api_creds])
+
+        with patch("backend.copilot.integration_creds._manager", mock_manager):
+            result = await get_provider_token(_USER, _PROVIDER)
+
+        assert result == "my-api-key"
+        assert _token_cache.get((_USER, _PROVIDER)) == "my-api-key"
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_oauth2_preferred_over_api_key(self):
+        oauth_creds = _make_oauth2_creds("oauth-tok")
+        api_creds = _make_api_key_creds("api-tok")
+        mock_manager = MagicMock()
+        mock_manager.store.get_creds_by_provider = AsyncMock(
+            return_value=[api_creds, oauth_creds]
+        )
+        mock_manager.refresh_if_needed = AsyncMock(return_value=oauth_creds)
+
+        with patch("backend.copilot.integration_creds._manager", mock_manager):
+            result = await get_provider_token(_USER, _PROVIDER)
+
+        assert result == "oauth-tok"
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_oauth2_refresh_failure_falls_back_to_stale_token(self):
+        oauth_creds = _make_oauth2_creds("stale-oauth-tok")
+        mock_manager = MagicMock()
+        mock_manager.store.get_creds_by_provider = AsyncMock(return_value=[oauth_creds])
+        mock_manager.refresh_if_needed = AsyncMock(side_effect=RuntimeError("network"))
+
+        with patch("backend.copilot.integration_creds._manager", mock_manager):
+            result = await get_provider_token(_USER, _PROVIDER)
+
+        assert result == "stale-oauth-tok"
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_no_credentials_caches_null_entry(self):
+        mock_manager = MagicMock()
+        mock_manager.store.get_creds_by_provider = AsyncMock(return_value=[])
+
+        with patch("backend.copilot.integration_creds._manager", mock_manager):
+            result = await get_provider_token(_USER, _PROVIDER)
+
+        assert result is None
+        assert _null_cache.get((_USER, _PROVIDER)) is True
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_db_exception_returns_none_without_caching(self):
+        mock_manager = MagicMock()
+        mock_manager.store.get_creds_by_provider = AsyncMock(
+            side_effect=RuntimeError("db down")
+        )
+
+        with patch("backend.copilot.integration_creds._manager", mock_manager):
+            result = await get_provider_token(_USER, _PROVIDER)
+
+        assert result is None
+        # DB errors are not cached — next call will retry
+        assert (_USER, _PROVIDER) not in _token_cache
+        assert (_USER, _PROVIDER) not in _null_cache
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_null_cache_has_shorter_ttl_than_token_cache(self):
+        """Verify the TTL constants are set correctly for each cache."""
+        assert _null_cache.ttl == _NULL_CACHE_TTL
+        assert _token_cache.ttl == _TOKEN_CACHE_TTL
+        assert _NULL_CACHE_TTL < _TOKEN_CACHE_TTL
+
+
+class TestGetIntegrationEnvVars:
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_injects_all_env_vars_for_provider(self):
+        _token_cache[(_USER, "github")] = "gh-tok"
+
+        result = await get_integration_env_vars(_USER)
+
+        for var in PROVIDER_ENV_VARS["github"]:
+            assert result[var] == "gh-tok"
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_empty_dict_when_no_credentials(self):
+        _null_cache[(_USER, "github")] = True
+
+        result = await get_integration_env_vars(_USER)
+
+        assert result == {}

autogpt_platform/backend/backend/copilot/prompting.py

@@ -52,17 +52,68 @@ Examples:
 You can embed a reference inside any string argument, or use it as the entire
 value.  Multiple references in one argument are all expanded.
 
-**Type coercion**: The platform automatically coerces expanded string values
-to match the block's expected input types.  For example, if a block expects
-`list[list[str]]` and you pass a string containing a JSON array (e.g. from
-an @@agptfile: expansion), the string will be parsed into the correct type.
+**Structured data**: When the **entire** argument value is a single file
+reference (no surrounding text), the platform automatically parses the file
+content based on its extension or MIME type.  Supported formats: JSON, JSONL,
+CSV, TSV, YAML, TOML, Parquet, and Excel (.xlsx — first sheet only).
+For example, pass `@@agptfile:workspace://<id>` where the file is a `.csv` and
+the rows will be parsed into `list[list[str]]` automatically.  If the format is
+unrecognised or parsing fails, the content is returned as a plain string.
+Legacy `.xls` files are **not** supported — only the modern `.xlsx` format.
 
+**Type coercion**: The platform also coerces expanded values to match the
+block's expected input types.  For example, if a block expects `list[list[str]]`
+and the expanded value is a JSON string, it will be parsed into the correct type.
+
+### Media file inputs (format: "file")
+Some block inputs accept media files — their schema shows `"format": "file"`.
+These fields accept:
+- **`workspace://<file_id>`** or **`workspace://<file_id>#<mime>`** — preferred
+  for large files (images, videos, PDFs). The platform passes the reference
+  directly to the block without reading the content into memory.
+- **`data:<mime>;base64,<payload>`** — inline base64 data URI, suitable for
+  small files only.
+
+When a block input has `format: "file"`, **pass the `workspace://` URI
+directly as the value** (do NOT wrap it in `@@agptfile:`). This avoids large
+payloads in tool arguments and preserves binary content (images, videos)
+that would be corrupted by text encoding.
+
+Example — committing an image file to GitHub:
+```json
+{
+  "files": [{
+    "path": "docs/hero.png",
+    "content": "workspace://abc123#image/png",
+    "operation": "upsert"
+  }]
+}
+```
 
 ### Sub-agent tasks
 - When using the Task tool, NEVER set `run_in_background` to true.
   All tasks must run in the foreground.
 """
 
+# E2B-only notes — E2B has full internet access so gh CLI works there.
+# Not shown in local (bubblewrap) mode: --unshare-net blocks all network.
+_E2B_TOOL_NOTES = """
+### GitHub CLI (`gh`) and git
+- If the user has connected their GitHub account, both `gh` and `git` are
+  pre-authenticated — use them directly without any manual login step.
+  `git` HTTPS operations (clone, push, pull) work automatically.
+- If the token changes mid-session (e.g. user reconnects with a new token),
+  run `gh auth setup-git` to re-register the credential helper.
+- If `gh` or `git` fails with an authentication error (e.g. "authentication
+  required", "could not read Username", or exit code 128), call
+  `connect_integration(provider="github")` to surface the GitHub credentials
+  setup card so the user can connect their account. Once connected, retry
+  the operation.
+- For operations that need broader access (e.g. private org repos, GitHub
+  Actions), pass the required scopes: e.g.
+  `connect_integration(provider="github", scopes=["repo", "read:org"])`.
+"""
+
 
 # Environment-specific supplement templates
 def _build_storage_supplement(
@@ -73,6 +124,7 @@ def _build_storage_supplement(
     storage_system_1_persistence: list[str],
     file_move_name_1_to_2: str,
     file_move_name_2_to_1: str,
+    extra_notes: str = "",
 ) -> str:
     """Build storage/filesystem supplement for a specific environment.
 
@@ -87,6 +139,7 @@ def _build_storage_supplement(
         storage_system_1_persistence: List of persistence behavior descriptions
         file_move_name_1_to_2: Direction label for primary→persistent
         file_move_name_2_to_1: Direction label for persistent→primary
+        extra_notes: Environment-specific notes appended after shared notes
     """
     # Format lists as bullet points with proper indentation
     characteristics = "\n".join(f"   - {c}" for c in storage_system_1_characteristics)
@@ -120,12 +173,16 @@ def _build_storage_supplement(
 
 ### File persistence
 Important files (code, configs, outputs) should be saved to workspace to ensure they persist.
-{_SHARED_TOOL_NOTES}"""
+{_SHARED_TOOL_NOTES}{extra_notes}"""
 
 
 # Pre-built supplements for common environments
 def _get_local_storage_supplement(cwd: str) -> str:
-    """Local ephemeral storage (files lost between turns)."""
+    """Local ephemeral storage (files lost between turns).
+
+    Network is isolated (bubblewrap --unshare-net), so internet-dependent CLIs
+    like gh will not work — no integration env-var notes are included.
+    """
     return _build_storage_supplement(
         working_dir=cwd,
         sandbox_type="in a network-isolated sandbox",
@@ -143,7 +200,11 @@ def _get_local_storage_supplement(cwd: str) -> str:
 
 
 def _get_cloud_sandbox_supplement() -> str:
-    """Cloud persistent sandbox (files survive across turns in session)."""
+    """Cloud persistent sandbox (files survive across turns in session).
+
+    E2B has full internet access, so integration tokens (GH_TOKEN etc.) are
+    injected per command in bash_exec — include the CLI guidance notes.
+    """
     return _build_storage_supplement(
         working_dir="/home/user",
         sandbox_type="in a cloud sandbox with full internet access",
@@ -158,6 +219,7 @@ def _get_cloud_sandbox_supplement() -> str:
         ],
         file_move_name_1_to_2="Sandbox → Persistent",
         file_move_name_2_to_1="Persistent → Sandbox",
+        extra_notes=_E2B_TOOL_NOTES,
     )
 
 

autogpt_platform/backend/backend/copilot/sdk/__init__.py

@@ -3,12 +3,45 @@
 This module provides the integration layer between the Claude Agent SDK
 and the existing CoPilot tool system, enabling drop-in replacement of
 the current LLM orchestration with the battle-tested Claude Agent SDK.
+
+Submodule imports are deferred via PEP 562 ``__getattr__`` to break a
+circular import cycle::
+
+    sdk/__init__ → tool_adapter → copilot.tools (TOOL_REGISTRY)
+    copilot.tools → run_block → sdk.file_ref  (no cycle here, but…)
+    sdk/__init__ → service → copilot.prompting → copilot.tools  (cycle!)
+
+``tool_adapter`` uses ``TOOL_REGISTRY`` at **module level** to build the
+static ``COPILOT_TOOL_NAMES`` list, so the import cannot be deferred to
+function scope without a larger refactor (moving tool-name registration
+to a separate lightweight module).  The lazy-import pattern here is the
+least invasive way to break the cycle while keeping module-level constants
+intact.
 """
 
-from .service import stream_chat_completion_sdk
-from .tool_adapter import create_copilot_mcp_server
+from typing import Any
 
 __all__ = [
     "stream_chat_completion_sdk",
     "create_copilot_mcp_server",
 ]
+
+# Dispatch table for PEP 562 lazy imports.  Each entry is a (module, attr)
+# pair so new exports can be added without touching __getattr__ itself.
+_LAZY_IMPORTS: dict[str, tuple[str, str]] = {
+    "stream_chat_completion_sdk": (".service", "stream_chat_completion_sdk"),
+    "create_copilot_mcp_server": (".tool_adapter", "create_copilot_mcp_server"),
+}
+
+
+def __getattr__(name: str) -> Any:
+    entry = _LAZY_IMPORTS.get(name)
+    if entry is not None:
+        module_path, attr = entry
+        import importlib
+
+        module = importlib.import_module(module_path, package=__name__)
+        value = getattr(module, attr)
+        globals()[name] = value
+        return value
+    raise AttributeError(f"module {__name__!r} has no attribute {name!r}")

autogpt_platform/backend/backend/copilot/sdk/file_ref.py

@@ -41,12 +41,20 @@ from typing import Any
 from backend.copilot.context import (
     get_current_sandbox,
     get_sdk_cwd,
+    get_workspace_manager,
     is_allowed_local_path,
     resolve_sandbox_path,
 )
 from backend.copilot.model import ChatSession
-from backend.copilot.tools.workspace_files import get_manager
 from backend.util.file import parse_workspace_uri
+from backend.util.file_content_parser import (
+    BINARY_FORMATS,
+    MIME_TO_FORMAT,
+    PARSE_EXCEPTIONS,
+    infer_format_from_uri,
+    parse_file_content,
+)
+from backend.util.type import MediaFileType
 
 
 class FileRefExpansionError(Exception):
@@ -74,6 +82,8 @@ _FILE_REF_RE = re.compile(
 _MAX_EXPAND_CHARS = 200_000
 # Maximum total characters across all @@agptfile: expansions in one string.
 _MAX_TOTAL_EXPAND_CHARS = 1_000_000
+# Maximum raw byte size for bare ref structured parsing (10 MB).
+_MAX_BARE_REF_BYTES = 10_000_000
 
 
 @dataclass
@@ -83,6 +93,11 @@ class FileRef:
     end_line: int | None  # 1-indexed, inclusive
 
 
+# ---------------------------------------------------------------------------
+# Public API  (top-down: main functions first, helpers below)
+# ---------------------------------------------------------------------------
+
+
 def parse_file_ref(text: str) -> FileRef | None:
     """Return a :class:`FileRef` if *text* is a bare file reference token.
 
@@ -104,17 +119,6 @@ def parse_file_ref(text: str) -> FileRef | None:
     return FileRef(uri=m.group(1), start_line=start, end_line=end)
 
 
-def _apply_line_range(text: str, start: int | None, end: int | None) -> str:
-    """Slice *text* to the requested 1-indexed line range (inclusive)."""
-    if start is None and end is None:
-        return text
-    lines = text.splitlines(keepends=True)
-    s = (start - 1) if start is not None else 0
-    e = end if end is not None else len(lines)
-    selected = list(itertools.islice(lines, s, e))
-    return "".join(selected)
-
-
 async def read_file_bytes(
     uri: str,
     user_id: str | None,
@@ -130,27 +134,47 @@ async def read_file_bytes(
     if plain.startswith("workspace://"):
         if not user_id:
             raise ValueError("workspace:// file references require authentication")
-        manager = await get_manager(user_id, session.session_id)
+        manager = await get_workspace_manager(user_id, session.session_id)
         ws = parse_workspace_uri(plain)
         try:
-            return await (
+            data = await (
                 manager.read_file(ws.file_ref)
                 if ws.is_path
                 else manager.read_file_by_id(ws.file_ref)
             )
         except FileNotFoundError:
             raise ValueError(f"File not found: {plain}")
-        except Exception as exc:
+        except (PermissionError, OSError) as exc:
             raise ValueError(f"Failed to read {plain}: {exc}") from exc
+        except (AttributeError, TypeError, RuntimeError) as exc:
+            # AttributeError/TypeError: workspace manager returned an
+            # unexpected type or interface; RuntimeError: async runtime issues.
+            logger.warning("Unexpected error reading %s: %s", plain, exc)
+            raise ValueError(f"Failed to read {plain}: {exc}") from exc
+        # NOTE: Workspace API does not support pre-read size checks;
+        # the full file is loaded before the size guard below.
+        if len(data) > _MAX_BARE_REF_BYTES:
+            raise ValueError(
+                f"File too large ({len(data)} bytes, limit {_MAX_BARE_REF_BYTES})"
+            )
+        return data
 
     if is_allowed_local_path(plain, get_sdk_cwd()):
         resolved = os.path.realpath(os.path.expanduser(plain))
         try:
+            # Read with a one-byte overshoot to detect files that exceed the limit
+            # without a separate os.path.getsize call (avoids TOCTOU race).
             with open(resolved, "rb") as fh:
-                return fh.read()
+                data = fh.read(_MAX_BARE_REF_BYTES + 1)
+            if len(data) > _MAX_BARE_REF_BYTES:
+                raise ValueError(
+                    f"File too large (>{_MAX_BARE_REF_BYTES} bytes, "
+                    f"limit {_MAX_BARE_REF_BYTES})"
+                )
+            return data
         except FileNotFoundError:
             raise ValueError(f"File not found: {plain}")
-        except Exception as exc:
+        except OSError as exc:
             raise ValueError(f"Failed to read {plain}: {exc}") from exc
 
     sandbox = get_current_sandbox()
@@ -162,9 +186,33 @@ async def read_file_bytes(
                 f"Path is not allowed (not in workspace, sdk_cwd, or sandbox): {plain}"
             ) from exc
         try:
-            return bytes(await sandbox.files.read(remote, format="bytes"))
-        except Exception as exc:
+            data = bytes(await sandbox.files.read(remote, format="bytes"))
+        except (FileNotFoundError, OSError, UnicodeDecodeError) as exc:
             raise ValueError(f"Failed to read from sandbox: {plain}: {exc}") from exc
+        except Exception as exc:
+            # E2B SDK raises SandboxException subclasses (NotFoundException,
+            # TimeoutException, NotEnoughSpaceException, etc.) which don't
+            # inherit from standard exceptions.  Import lazily to avoid a
+            # hard dependency on e2b at module level.
+            try:
+                from e2b.exceptions import SandboxException  # noqa: PLC0415
+
+                if isinstance(exc, SandboxException):
+                    raise ValueError(
+                        f"Failed to read from sandbox: {plain}: {exc}"
+                    ) from exc
+            except ImportError:
+                pass
+            # Re-raise unexpected exceptions (TypeError, AttributeError, etc.)
+            # so they surface as real bugs rather than being silently masked.
+            raise
+        # NOTE: E2B sandbox API does not support pre-read size checks;
+        # the full file is loaded before the size guard below.
+        if len(data) > _MAX_BARE_REF_BYTES:
+            raise ValueError(
+                f"File too large ({len(data)} bytes, limit {_MAX_BARE_REF_BYTES})"
+            )
+        return data
 
     raise ValueError(
         f"Path is not allowed (not in workspace, sdk_cwd, or sandbox): {plain}"
@@ -178,15 +226,13 @@ async def resolve_file_ref(
 ) -> str:
     """Resolve a :class:`FileRef` to its text content."""
     raw = await read_file_bytes(ref.uri, user_id, session)
-    return _apply_line_range(
-        raw.decode("utf-8", errors="replace"), ref.start_line, ref.end_line
-    )
+    return _apply_line_range(_to_str(raw), ref.start_line, ref.end_line)
 
 
 async def expand_file_refs_in_string(
     text: str,
     user_id: str | None,
-    session: "ChatSession",
+    session: ChatSession,
     *,
     raise_on_error: bool = False,
 ) -> str:
@@ -232,6 +278,9 @@ async def expand_file_refs_in_string(
             if len(content) > _MAX_EXPAND_CHARS:
                 content = content[:_MAX_EXPAND_CHARS] + "\n... [truncated]"
             remaining = _MAX_TOTAL_EXPAND_CHARS - total_chars
+            # remaining == 0 means the budget was exactly exhausted by the
+            # previous ref.  The elif below (len > remaining) won't catch
+            # this since 0 > 0 is false, so we need the <= 0 check.
             if remaining <= 0:
                 content = "[file-ref budget exhausted: total expansion limit reached]"
             elif len(content) > remaining:
@@ -252,13 +301,31 @@ async def expand_file_refs_in_string(
 async def expand_file_refs_in_args(
     args: dict[str, Any],
     user_id: str | None,
-    session: "ChatSession",
+    session: ChatSession,
+    *,
+    input_schema: dict[str, Any] | None = None,
 ) -> dict[str, Any]:
     """Recursively expand ``@@agptfile:...`` references in tool call arguments.
 
     String values are expanded in-place.  Nested dicts and lists are
     traversed.  Non-string scalars are returned unchanged.
 
+    **Bare references** (the entire argument value is a single
+    ``@@agptfile:...`` token with no surrounding text) are resolved and then
+    parsed according to the file's extension or MIME type.  See
+    :mod:`backend.util.file_content_parser` for the full list of supported
+    formats (JSON, JSONL, CSV, TSV, YAML, TOML, Parquet, Excel).
+
+    When *input_schema* is provided and the target property has
+    ``"type": "string"``, structured parsing is skipped — the raw file content
+    is returned as a plain string so blocks receive the original text.
+
+    If the format is unrecognised or parsing fails, the content is returned as
+    a plain string (the fallback).
+
+    **Embedded references** (``@@agptfile:`` mixed with other text) always
+    produce a plain string — structured parsing only applies to bare refs.
+
     Raises :class:`FileRefExpansionError` if any reference fails to resolve,
     so the tool is *not* executed with an error string as its input.  The
     caller (the MCP tool wrapper) should convert this into an MCP error
@@ -267,15 +334,382 @@ async def expand_file_refs_in_args(
     if not args:
         return args
 
-    async def _expand(value: Any) -> Any:
+    properties = (input_schema or {}).get("properties", {})
+
+    async def _expand(
+        value: Any,
+        *,
+        prop_schema: dict[str, Any] | None = None,
+    ) -> Any:
+        """Recursively expand a single argument value.
+
+        Strings are checked for ``@@agptfile:`` references and expanded
+        (bare refs get structured parsing; embedded refs get inline
+        substitution).  Dicts and lists are traversed recursively,
+        threading the corresponding sub-schema from *prop_schema* so
+        that nested fields also receive correct type-aware expansion.
+        Non-string scalars pass through unchanged.
+        """
         if isinstance(value, str):
+            ref = parse_file_ref(value)
+            if ref is not None:
+                # MediaFileType fields: return the raw URI immediately —
+                # no file reading, no format inference, no content parsing.
+                if _is_media_file_field(prop_schema):
+                    return ref.uri
+
+                fmt = infer_format_from_uri(ref.uri)
+                # Workspace URIs by ID (workspace://abc123) have no extension.
+                # When the MIME fragment is also missing, fall back to the
+                # workspace file manager's metadata for format detection.
+                if fmt is None and ref.uri.startswith("workspace://"):
+                    fmt = await _infer_format_from_workspace(ref.uri, user_id, session)
+                return await _expand_bare_ref(ref, fmt, user_id, session, prop_schema)
+
+            # Not a bare ref — do normal inline expansion.
             return await expand_file_refs_in_string(
                 value, user_id, session, raise_on_error=True
             )
         if isinstance(value, dict):
-            return {k: await _expand(v) for k, v in value.items()}
+            # When the schema says this is an object but doesn't define
+            # inner properties, skip expansion — the caller (e.g.
+            # RunBlockTool) will expand with the actual nested schema.
+            if (
+                prop_schema is not None
+                and prop_schema.get("type") == "object"
+                and "properties" not in prop_schema
+            ):
+                return value
+            nested_props = (prop_schema or {}).get("properties", {})
+            return {
+                k: await _expand(v, prop_schema=nested_props.get(k))
+                for k, v in value.items()
+            }
         if isinstance(value, list):
-            return [await _expand(item) for item in value]
+            items_schema = (prop_schema or {}).get("items")
+            return [await _expand(item, prop_schema=items_schema) for item in value]
         return value
 
-    return {k: await _expand(v) for k, v in args.items()}
+    return {k: await _expand(v, prop_schema=properties.get(k)) for k, v in args.items()}
+
+
+# ---------------------------------------------------------------------------
+# Private helpers  (used by the public functions above)
+# ---------------------------------------------------------------------------
+
+
+def _apply_line_range(text: str, start: int | None, end: int | None) -> str:
+    """Slice *text* to the requested 1-indexed line range (inclusive).
+
+    When the requested range extends beyond the file, a note is appended
+    so the LLM knows it received the entire remaining content.
+    """
+    if start is None and end is None:
+        return text
+    lines = text.splitlines(keepends=True)
+    total = len(lines)
+    s = (start - 1) if start is not None else 0
+    e = end if end is not None else total
+    selected = list(itertools.islice(lines, s, e))
+    result = "".join(selected)
+    if end is not None and end > total:
+        result += f"\n[Note: file has only {total} lines]\n"
+    return result
+
+
+def _to_str(content: str | bytes) -> str:
+    """Decode *content* to a string if it is bytes, otherwise return as-is."""
+    if isinstance(content, str):
+        return content
+    return content.decode("utf-8", errors="replace")
+
+
+def _check_content_size(content: str | bytes) -> None:
+    """Raise :class:`ValueError` if *content* exceeds the byte limit.
+
+    Raises ``ValueError`` (not ``FileRefExpansionError``) so that the caller
+    (``_expand_bare_ref``) can unify all resolution errors into a single
+    ``except ValueError`` → ``FileRefExpansionError`` handler, keeping the
+    error-flow consistent with ``read_file_bytes`` and ``resolve_file_ref``.
+
+    For ``bytes``, the length is the byte count directly.  For ``str``,
+    we encode to UTF-8 first because multi-byte characters (e.g. emoji)
+    mean the byte size can be up to 4x the character count.
+    """
+    if isinstance(content, bytes):
+        size = len(content)
+    else:
+        char_len = len(content)
+        # Fast lower bound: UTF-8 byte count >= char count.
+        # If char count already exceeds the limit, reject immediately
+        # without allocating an encoded copy.
+        if char_len > _MAX_BARE_REF_BYTES:
+            size = char_len  # real byte size is even larger
+        # Fast upper bound: each char is at most 4 UTF-8 bytes.
+        # If worst-case is still under the limit, skip encoding entirely.
+        elif char_len * 4 <= _MAX_BARE_REF_BYTES:
+            return
+        else:
+            # Edge case: char count is under limit but multibyte chars
+            # might push byte count over. Encode to get exact size.
+            size = len(content.encode("utf-8"))
+    if size > _MAX_BARE_REF_BYTES:
+        raise ValueError(
+            f"File too large for structured parsing "
+            f"({size} bytes, limit {_MAX_BARE_REF_BYTES})"
+        )
+
+
+async def _infer_format_from_workspace(
+    uri: str,
+    user_id: str | None,
+    session: ChatSession,
+) -> str | None:
+    """Look up workspace file metadata to infer the format.
+
+    Workspace URIs by ID (``workspace://abc123``) have no file extension.
+    When the MIME fragment is also absent, we query the workspace file
+    manager for the file's stored MIME type and original filename.
+    """
+    if not user_id:
+        return None
+    try:
+        ws = parse_workspace_uri(uri)
+        manager = await get_workspace_manager(user_id, session.session_id)
+        info = await (
+            manager.get_file_info(ws.file_ref)
+            if not ws.is_path
+            else manager.get_file_info_by_path(ws.file_ref)
+        )
+        if info is None:
+            return None
+        # Try MIME type first, then filename extension.
+        mime = (info.mime_type or "").split(";", 1)[0].strip().lower()
+        return MIME_TO_FORMAT.get(mime) or infer_format_from_uri(info.name)
+    except (
+        ValueError,
+        FileNotFoundError,
+        OSError,
+        PermissionError,
+        AttributeError,
+        TypeError,
+    ):
+        # Expected failures: bad URI, missing file, permission denied, or
+        # workspace manager returning unexpected types.  Propagate anything
+        # else (e.g. programming errors) so they don't get silently swallowed.
+        logger.debug("workspace metadata lookup failed for %s", uri, exc_info=True)
+        return None
+
+
+def _is_media_file_field(prop_schema: dict[str, Any] | None) -> bool:
+    """Return True if *prop_schema* describes a MediaFileType field (format: file)."""
+    if prop_schema is None:
+        return False
+    return (
+        prop_schema.get("type") == "string"
+        and prop_schema.get("format") == MediaFileType.string_format
+    )
+
+
+async def _expand_bare_ref(
+    ref: FileRef,
+    fmt: str | None,
+    user_id: str | None,
+    session: ChatSession,
+    prop_schema: dict[str, Any] | None,
+) -> Any:
+    """Resolve and parse a bare ``@@agptfile:`` reference.
+
+    This is the structured-parsing path: the file is read, optionally parsed
+    according to *fmt*, and adapted to the target *prop_schema*.
+
+    Raises :class:`FileRefExpansionError` on resolution or parsing failure.
+
+    Note: MediaFileType fields (format: "file") are handled earlier in
+    ``_expand`` to avoid unnecessary format inference and file I/O.
+    """
+    try:
+        if fmt is not None and fmt in BINARY_FORMATS:
+            # Binary formats need raw bytes, not UTF-8 text.
+            # Line ranges are meaningless for binary formats (parquet/xlsx)
+            # — ignore them and parse full bytes.  Warn so the caller/model
+            # knows the range was silently dropped.
+            if ref.start_line is not None or ref.end_line is not None:
+                logger.warning(
+                    "Line range [%s-%s] ignored for binary format %s (%s); "
+                    "binary formats are always parsed in full.",
+                    ref.start_line,
+                    ref.end_line,
+                    fmt,
+                    ref.uri,
+                )
+            content: str | bytes = await read_file_bytes(ref.uri, user_id, session)
+        else:
+            content = await resolve_file_ref(ref, user_id, session)
+    except ValueError as exc:
+        raise FileRefExpansionError(str(exc)) from exc
+
+    # For known formats this rejects files >10 MB before parsing.
+    # For unknown formats _MAX_EXPAND_CHARS (200K chars) below is stricter,
+    # but this check still guards the parsing path which has no char limit.
+    # _check_content_size raises ValueError, which we unify here just like
+    # resolution errors above.
+    try:
+        _check_content_size(content)
+    except ValueError as exc:
+        raise FileRefExpansionError(str(exc)) from exc
+
+    # When the schema declares this parameter as "string",
+    # return raw file content — don't parse into a structured
+    # type that would need json.dumps() serialisation.
+    expect_string = (prop_schema or {}).get("type") == "string"
+    if expect_string:
+        if isinstance(content, bytes):
+            raise FileRefExpansionError(
+                f"Cannot use {fmt} file as text input: "
+                f"binary formats (parquet, xlsx) must be passed "
+                f"to a block that accepts structured data (list/object), "
+                f"not a string-typed parameter."
+            )
+        return content
+
+    if fmt is not None:
+        # Use strict mode for binary formats so we surface the
+        # actual error (e.g. missing pyarrow/openpyxl, corrupt
+        # file) instead of silently returning garbled bytes.
+        strict = fmt in BINARY_FORMATS
+        try:
+            parsed = parse_file_content(content, fmt, strict=strict)
+        except PARSE_EXCEPTIONS as exc:
+            raise FileRefExpansionError(f"Failed to parse {fmt} file: {exc}") from exc
+        # Normalize bytes fallback to str so tools never
+        # receive raw bytes when parsing fails.
+        if isinstance(parsed, bytes):
+            parsed = _to_str(parsed)
+        return _adapt_to_schema(parsed, prop_schema)
+
+    # Unknown format — return as plain string, but apply
+    # the same per-ref character limit used by inline refs
+    # to prevent injecting unexpectedly large content.
+    text = _to_str(content)
+    if len(text) > _MAX_EXPAND_CHARS:
+        text = text[:_MAX_EXPAND_CHARS] + "\n... [truncated]"
+    return text
+
+
+def _adapt_to_schema(parsed: Any, prop_schema: dict[str, Any] | None) -> Any:
+    """Adapt a parsed file value to better fit the target schema type.
+
+    When the parser returns a natural type (e.g. dict from YAML, list from CSV)
+    that doesn't match the block's expected type, this function converts it to
+    a more useful representation instead of relying on pydantic's generic
+    coercion (which can produce awkward results like flattened dicts → lists).
+
+    Returns *parsed* unchanged when no adaptation is needed.
+    """
+    if prop_schema is None:
+        return parsed
+
+    target_type = prop_schema.get("type")
+
+    # Dict → array: delegate to helper.
+    if isinstance(parsed, dict) and target_type == "array":
+        return _adapt_dict_to_array(parsed, prop_schema)
+
+    # List → object: delegate to helper (raises for non-tabular lists).
+    if isinstance(parsed, list) and target_type == "object":
+        return _adapt_list_to_object(parsed)
+
+    # Tabular list → Any (no type): convert to list of dicts.
+    # Blocks like FindInDictionaryBlock have `input: Any` which produces
+    # a schema with no "type" key.  Tabular [[header],[rows]] is unusable
+    # for key lookup, but [{col: val}, ...] works with FindInDict's
+    # list-of-dicts branch (line 195-199 in data_manipulation.py).
+    if isinstance(parsed, list) and target_type is None and _is_tabular(parsed):
+        return _tabular_to_list_of_dicts(parsed)
+
+    return parsed
+
+
+def _adapt_dict_to_array(parsed: dict, prop_schema: dict[str, Any]) -> Any:
+    """Adapt a parsed dict to an array-typed field.
+
+    Extracts list-valued entries when the target item type is ``array``,
+    passes through unchanged when item type is ``string`` (lets pydantic error),
+    or wraps in ``[parsed]`` as a fallback.
+    """
+    items_type = (prop_schema.get("items") or {}).get("type")
+    if items_type == "array":
+        # Target is List[List[Any]] — extract list-typed values from the
+        # dict as inner lists.  E.g. YAML {"fruits": [{...},...]}} with
+        # ConcatenateLists (List[List[Any]]) → [[{...},...]].
+        list_values = [v for v in parsed.values() if isinstance(v, list)]
+        if list_values:
+            return list_values
+    if items_type == "string":
+        # Target is List[str] — wrapping a dict would give [dict]
+        # which can't coerce to strings.  Return unchanged and let
+        # pydantic surface a clear validation error.
+        return parsed
+    # Fallback: wrap in a single-element list so the block gets [dict]
+    # instead of pydantic flattening keys/values into a flat list.
+    return [parsed]
+
+
+def _adapt_list_to_object(parsed: list) -> Any:
+    """Adapt a parsed list to an object-typed field.
+
+    Converts tabular lists to column-dicts; raises for non-tabular lists.
+    """
+    if _is_tabular(parsed):
+        return _tabular_to_column_dict(parsed)
+    # Non-tabular list (e.g. a plain Python list from a YAML file) cannot
+    # be meaningfully coerced to an object.  Raise explicitly so callers
+    # get a clear error rather than pydantic silently wrapping the list.
+    raise FileRefExpansionError(
+        "Cannot adapt a non-tabular list to an object-typed field. "
+        "Expected a tabular structure ([[header], [row1], ...]) or a dict."
+    )
+
+
+def _is_tabular(parsed: Any) -> bool:
+    """Check if parsed data is in tabular format: [[header], [row1], ...].
+
+    Uses isinstance checks because this is a structural type guard on
+    opaque parser output (Any), not duck typing.  A Protocol wouldn't
+    help here — we need to verify exact list-of-lists shape.
+    """
+    if not isinstance(parsed, list) or len(parsed) < 2:
+        return False
+    header = parsed[0]
+    if not isinstance(header, list) or not header:
+        return False
+    if not all(isinstance(h, str) for h in header):
+        return False
+    return all(isinstance(row, list) for row in parsed[1:])
+
+
+def _tabular_to_list_of_dicts(parsed: list) -> list[dict[str, Any]]:
+    """Convert [[header], [row1], ...] → [{header[0]: row[0], ...}, ...].
+
+    Ragged rows (fewer columns than the header) get None for missing values.
+    Extra values beyond the header length are silently dropped.
+    """
+    header = parsed[0]
+    return [
+        dict(itertools.zip_longest(header, row[: len(header)], fillvalue=None))
+        for row in parsed[1:]
+    ]
+
+
+def _tabular_to_column_dict(parsed: list) -> dict[str, list]:
+    """Convert [[header], [row1], ...] → {"col1": [val1, ...], ...}.
+
+    Ragged rows (fewer columns than the header) get None for missing values,
+    ensuring all columns have equal length.
+    """
+    header = parsed[0]
+    return {
+        col: [row[i] if i < len(row) else None for row in parsed[1:]]
+        for i, col in enumerate(header)
+    }

autogpt_platform/backend/backend/copilot/sdk/file_ref_integration_test.py

@@ -175,6 +175,199 @@ async def test_expand_args_replaces_file_ref_in_nested_dict():
         assert result["count"] == 42
 
 
+# ---------------------------------------------------------------------------
+# expand_file_refs_in_args — bare ref structured parsing
+# ---------------------------------------------------------------------------
+
+
+@pytest.mark.asyncio
+async def test_bare_ref_json_returns_parsed_dict():
+    """Bare ref to a .json file returns parsed dict, not raw string."""
+    with tempfile.TemporaryDirectory() as sdk_cwd:
+        json_file = os.path.join(sdk_cwd, "data.json")
+        with open(json_file, "w") as f:
+            f.write('{"key": "value", "count": 42}')
+
+        with patch("backend.copilot.context._current_sdk_cwd") as mock_cwd_var:
+            mock_cwd_var.get.return_value = sdk_cwd
+
+            result = await expand_file_refs_in_args(
+                {"data": f"@@agptfile:{json_file}"},
+                user_id="u1",
+                session=_make_session(),
+            )
+
+        assert result["data"] == {"key": "value", "count": 42}
+
+
+@pytest.mark.asyncio
+async def test_bare_ref_csv_returns_parsed_table():
+    """Bare ref to a .csv file returns list[list[str]] table."""
+    with tempfile.TemporaryDirectory() as sdk_cwd:
+        csv_file = os.path.join(sdk_cwd, "data.csv")
+        with open(csv_file, "w") as f:
+            f.write("Name,Score\nAlice,90\nBob,85")
+
+        with patch("backend.copilot.context._current_sdk_cwd") as mock_cwd_var:
+            mock_cwd_var.get.return_value = sdk_cwd
+
+            result = await expand_file_refs_in_args(
+                {"input": f"@@agptfile:{csv_file}"},
+                user_id="u1",
+                session=_make_session(),
+            )
+
+        assert result["input"] == [
+            ["Name", "Score"],
+            ["Alice", "90"],
+            ["Bob", "85"],
+        ]
+
+
+@pytest.mark.asyncio
+async def test_bare_ref_unknown_extension_returns_string():
+    """Bare ref to a file with unknown extension returns plain string."""
+    with tempfile.TemporaryDirectory() as sdk_cwd:
+        txt_file = os.path.join(sdk_cwd, "readme.txt")
+        with open(txt_file, "w") as f:
+            f.write("plain text content")
+
+        with patch("backend.copilot.context._current_sdk_cwd") as mock_cwd_var:
+            mock_cwd_var.get.return_value = sdk_cwd
+
+            result = await expand_file_refs_in_args(
+                {"data": f"@@agptfile:{txt_file}"},
+                user_id="u1",
+                session=_make_session(),
+            )
+
+        assert result["data"] == "plain text content"
+        assert isinstance(result["data"], str)
+
+
+@pytest.mark.asyncio
+async def test_bare_ref_invalid_json_falls_back_to_string():
+    """Bare ref to a .json file with invalid JSON falls back to string."""
+    with tempfile.TemporaryDirectory() as sdk_cwd:
+        json_file = os.path.join(sdk_cwd, "bad.json")
+        with open(json_file, "w") as f:
+            f.write("not valid json {{{")
+
+        with patch("backend.copilot.context._current_sdk_cwd") as mock_cwd_var:
+            mock_cwd_var.get.return_value = sdk_cwd
+
+            result = await expand_file_refs_in_args(
+                {"data": f"@@agptfile:{json_file}"},
+                user_id="u1",
+                session=_make_session(),
+            )
+
+        assert result["data"] == "not valid json {{{"
+        assert isinstance(result["data"], str)
+
+
+@pytest.mark.asyncio
+async def test_embedded_ref_always_returns_string_even_for_json():
+    """Embedded ref (text around it) returns plain string, not parsed JSON."""
+    with tempfile.TemporaryDirectory() as sdk_cwd:
+        json_file = os.path.join(sdk_cwd, "data.json")
+        with open(json_file, "w") as f:
+            f.write('{"key": "value"}')
+
+        with patch("backend.copilot.context._current_sdk_cwd") as mock_cwd_var:
+            mock_cwd_var.get.return_value = sdk_cwd
+
+            result = await expand_file_refs_in_args(
+                {"data": f"prefix @@agptfile:{json_file} suffix"},
+                user_id="u1",
+                session=_make_session(),
+            )
+
+        assert isinstance(result["data"], str)
+        assert result["data"].startswith("prefix ")
+        assert result["data"].endswith(" suffix")
+
+
+@pytest.mark.asyncio
+async def test_bare_ref_yaml_returns_parsed_dict():
+    """Bare ref to a .yaml file returns parsed dict."""
+    with tempfile.TemporaryDirectory() as sdk_cwd:
+        yaml_file = os.path.join(sdk_cwd, "config.yaml")
+        with open(yaml_file, "w") as f:
+            f.write("name: test\ncount: 42\n")
+
+        with patch("backend.copilot.context._current_sdk_cwd") as mock_cwd_var:
+            mock_cwd_var.get.return_value = sdk_cwd
+
+            result = await expand_file_refs_in_args(
+                {"config": f"@@agptfile:{yaml_file}"},
+                user_id="u1",
+                session=_make_session(),
+            )
+
+        assert result["config"] == {"name": "test", "count": 42}
+
+
+@pytest.mark.asyncio
+async def test_bare_ref_binary_with_line_range_ignores_range():
+    """Bare ref to a binary file (.parquet) with line range parses the full file.
+
+    Binary formats (parquet, xlsx) ignore line ranges — the full content is
+    parsed and the range is silently dropped with a log warning.
+    """
+    try:
+        import pandas as pd
+    except ImportError:
+        pytest.skip("pandas not installed")
+    try:
+        import pyarrow  # noqa: F401  # pyright: ignore[reportMissingImports]
+    except ImportError:
+        pytest.skip("pyarrow not installed")
+
+    with tempfile.TemporaryDirectory() as sdk_cwd:
+        parquet_file = os.path.join(sdk_cwd, "data.parquet")
+        import io as _io
+
+        df = pd.DataFrame({"A": [1, 2, 3], "B": [4, 5, 6]})
+        buf = _io.BytesIO()
+        df.to_parquet(buf, index=False)
+        with open(parquet_file, "wb") as f:
+            f.write(buf.getvalue())
+
+        with patch("backend.copilot.context._current_sdk_cwd") as mock_cwd_var:
+            mock_cwd_var.get.return_value = sdk_cwd
+
+            # Line range [1-2] should be silently ignored for binary formats.
+            result = await expand_file_refs_in_args(
+                {"data": f"@@agptfile:{parquet_file}[1-2]"},
+                user_id="u1",
+                session=_make_session(),
+            )
+
+        # Full file is returned despite the line range.
+        assert result["data"] == [["A", "B"], [1, 4], [2, 5], [3, 6]]
+
+
+@pytest.mark.asyncio
+async def test_bare_ref_toml_returns_parsed_dict():
+    """Bare ref to a .toml file returns parsed dict."""
+    with tempfile.TemporaryDirectory() as sdk_cwd:
+        toml_file = os.path.join(sdk_cwd, "config.toml")
+        with open(toml_file, "w") as f:
+            f.write('name = "test"\ncount = 42\n')
+
+        with patch("backend.copilot.context._current_sdk_cwd") as mock_cwd_var:
+            mock_cwd_var.get.return_value = sdk_cwd
+
+            result = await expand_file_refs_in_args(
+                {"config": f"@@agptfile:{toml_file}"},
+                user_id="u1",
+                session=_make_session(),
+            )
+
+        assert result["config"] == {"name": "test", "count": 42}
+
+
 # ---------------------------------------------------------------------------
 # _read_file_handler — extended to accept workspace:// and local paths
 # ---------------------------------------------------------------------------
@@ -219,7 +412,7 @@ async def test_read_file_handler_workspace_uri():
         "backend.copilot.sdk.tool_adapter.get_execution_context",
         return_value=("user-1", mock_session),
     ), patch(
-        "backend.copilot.sdk.file_ref.get_manager",
+        "backend.copilot.sdk.file_ref.get_workspace_manager",
         new=AsyncMock(return_value=mock_manager),
     ):
         result = await _read_file_handler(
@@ -276,7 +469,7 @@ async def test_read_file_bytes_workspace_virtual_path():
     mock_manager.read_file.return_value = b"virtual path content"
 
     with patch(
-        "backend.copilot.sdk.file_ref.get_manager",
+        "backend.copilot.sdk.file_ref.get_workspace_manager",
         new=AsyncMock(return_value=mock_manager),
     ):
         result = await read_file_bytes("workspace:///reports/q1.md", "user-1", session)

autogpt_platform/backend/backend/copilot/sdk/service.py

@@ -29,6 +29,7 @@ from langfuse import propagate_attributes
 from langsmith.integrations.claude_agent_sdk import configure_claude_agent_sdk
 from pydantic import BaseModel
 
+from backend.copilot.context import get_workspace_manager
 from backend.data.redis_client import get_redis_async
 from backend.executor.cluster_lock import AsyncClusterLock
 from backend.util.exceptions import NotFoundError
@@ -62,7 +63,6 @@ from ..service import (
 )
 from ..tools.e2b_sandbox import get_or_create_sandbox, pause_sandbox_direct
 from ..tools.sandbox import WORKSPACE_PREFIX, make_session_path
-from ..tools.workspace_files import get_manager
 from ..tracking import track_user_message
 from .compaction import CompactionTracker, filter_compaction_messages
 from .response_adapter import SDKResponseAdapter
@@ -565,7 +565,7 @@ async def _prepare_file_attachments(
         return empty
 
     try:
-        manager = await get_manager(user_id, session_id)
+        manager = await get_workspace_manager(user_id, session_id)
     except Exception:
         logger.warning(
             "Failed to create workspace manager for file attachments",
@@ -769,7 +769,7 @@ async def stream_chat_completion_sdk(
                     )
                 return None
             try:
-                return await get_or_create_sandbox(
+                sandbox = await get_or_create_sandbox(
                     session_id,
                     api_key=e2b_api_key,
                     template=config.e2b_sandbox_template,
@@ -783,7 +783,9 @@ async def stream_chat_completion_sdk(
                     e2b_err,
                     exc_info=True,
                 )
-            return None
+                return None
+
+            return sandbox
 
         async def _fetch_transcript():
             """Download transcript for --resume if applicable."""

autogpt_platform/backend/backend/copilot/sdk/service_test.py

@@ -20,7 +20,7 @@ class _FakeFileInfo:
     size_bytes: int
 
 
-_PATCH_TARGET = "backend.copilot.sdk.service.get_manager"
+_PATCH_TARGET = "backend.copilot.sdk.service.get_workspace_manager"
 
 
 class TestPrepareFileAttachments:

autogpt_platform/backend/backend/copilot/sdk/tool_adapter.py

@@ -347,7 +347,7 @@ def create_copilot_mcp_server(*, use_e2b: bool = False):
     :func:`get_sdk_disallowed_tools`.
     """
 
-    def _truncating(fn, tool_name: str):
+    def _truncating(fn, tool_name: str, input_schema: dict[str, Any] | None = None):
         """Wrap a tool handler so its response is truncated to stay under the
         SDK's 10 MB JSON buffer, and stash the (truncated) output for the
         response adapter before the SDK can apply its own head-truncation.
@@ -361,7 +361,9 @@ def create_copilot_mcp_server(*, use_e2b: bool = False):
             user_id, session = get_execution_context()
             if session is not None:
                 try:
-                    args = await expand_file_refs_in_args(args, user_id, session)
+                    args = await expand_file_refs_in_args(
+                        args, user_id, session, input_schema=input_schema
+                    )
                 except FileRefExpansionError as exc:
                     return _mcp_error(
                         f"@@agptfile: reference could not be resolved: {exc}. "
@@ -389,11 +391,12 @@ def create_copilot_mcp_server(*, use_e2b: bool = False):
 
     for tool_name, base_tool in TOOL_REGISTRY.items():
         handler = create_tool_handler(base_tool)
+        schema = _build_input_schema(base_tool)
         decorated = tool(
             tool_name,
             base_tool.description,
-            _build_input_schema(base_tool),
-        )(_truncating(handler, tool_name))
+            schema,
+        )(_truncating(handler, tool_name, input_schema=schema))
         sdk_tools.append(decorated)
 
     # E2B file tools replace SDK built-in Read/Write/Edit/Glob/Grep.

autogpt_platform/backend/backend/copilot/tools/__init__.py

@@ -12,6 +12,7 @@ from .agent_browser import BrowserActTool, BrowserNavigateTool, BrowserScreensho
 from .agent_output import AgentOutputTool
 from .base import BaseTool
 from .bash_exec import BashExecTool
+from .connect_integration import ConnectIntegrationTool
 from .continue_run_block import ContinueRunBlockTool
 from .create_agent import CreateAgentTool
 from .customize_agent import CustomizeAgentTool
@@ -84,6 +85,7 @@ TOOL_REGISTRY: dict[str, BaseTool] = {
     "browser_screenshot": BrowserScreenshotTool(),
     # Sandboxed code execution (bubblewrap)
     "bash_exec": BashExecTool(),
+    "connect_integration": ConnectIntegrationTool(),
     # Persistent workspace tools (cloud storage, survives across sessions)
     # Feature request tools
     "search_feature_requests": SearchFeatureRequestsTool(),

autogpt_platform/backend/backend/copilot/tools/agent_browser.py

@@ -32,6 +32,7 @@ import shutil
 import tempfile
 from typing import Any
 
+from backend.copilot.context import get_workspace_manager
 from backend.copilot.model import ChatSession
 from backend.util.request import validate_url_host
 
@@ -43,7 +44,6 @@ from .models import (
     ErrorResponse,
     ToolResponseBase,
 )
-from .workspace_files import get_manager
 
 logger = logging.getLogger(__name__)
 
@@ -194,7 +194,7 @@ async def _save_browser_state(
             ),
         }
 
-        manager = await get_manager(user_id, session.session_id)
+        manager = await get_workspace_manager(user_id, session.session_id)
         await manager.write_file(
             content=json.dumps(state).encode("utf-8"),
             filename=_STATE_FILENAME,
@@ -218,7 +218,7 @@ async def _restore_browser_state(
     Returns True on success (or no state to restore), False on failure.
     """
     try:
-        manager = await get_manager(user_id, session.session_id)
+        manager = await get_workspace_manager(user_id, session.session_id)
 
         file_info = await manager.get_file_info_by_path(_STATE_FILENAME)
         if file_info is None:
@@ -360,7 +360,7 @@ async def close_browser_session(session_name: str, user_id: str | None = None) -
     # Delete persisted browser state (cookies, localStorage) from workspace.
     if user_id:
         try:
-            manager = await get_manager(user_id, session_name)
+            manager = await get_workspace_manager(user_id, session_name)
             file_info = await manager.get_file_info_by_path(_STATE_FILENAME)
             if file_info is not None:
                 await manager.delete_file(file_info.id)

autogpt_platform/backend/backend/copilot/tools/agent_browser_test.py

@@ -897,7 +897,7 @@ class TestHasLocalSession:
 # _save_browser_state
 # ---------------------------------------------------------------------------
 
-_GET_MANAGER = "backend.copilot.tools.agent_browser.get_manager"
+_GET_MANAGER = "backend.copilot.tools.agent_browser.get_workspace_manager"
 
 
 def _make_mock_manager():

autogpt_platform/backend/backend/copilot/tools/bash_exec.py

@@ -22,6 +22,7 @@ from e2b import AsyncSandbox
 from e2b.exceptions import TimeoutException
 
 from backend.copilot.context import E2B_WORKDIR, get_current_sandbox
+from backend.copilot.integration_creds import get_integration_env_vars
 from backend.copilot.model import ChatSession
 
 from .base import BaseTool
@@ -96,7 +97,9 @@ class BashExecTool(BaseTool):
 
         sandbox = get_current_sandbox()
         if sandbox is not None:
-            return await self._execute_on_e2b(sandbox, command, timeout, session_id)
+            return await self._execute_on_e2b(
+                sandbox, command, timeout, session_id, user_id
+            )
 
         # Bubblewrap fallback: local isolated execution.
         if not has_full_sandbox():
@@ -133,14 +136,27 @@ class BashExecTool(BaseTool):
         command: str,
         timeout: int,
         session_id: str | None,
+        user_id: str | None = None,
     ) -> ToolResponseBase:
-        """Execute *command* on the E2B sandbox via commands.run()."""
+        """Execute *command* on the E2B sandbox via commands.run().
+
+        Integration tokens (e.g. GH_TOKEN) are injected into the sandbox env
+        for any user with connected accounts. E2B has full internet access, so
+        CLI tools like ``gh`` work without manual authentication.
+        """
+        envs: dict[str, str] = {
+            "PATH": "/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin",
+        }
+        if user_id is not None:
+            integration_env = await get_integration_env_vars(user_id)
+            envs.update(integration_env)
+
         try:
             result = await sandbox.commands.run(
                 f"bash -c {shlex.quote(command)}",
                 cwd=E2B_WORKDIR,
                 timeout=timeout,
-                envs={"PATH": "/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin"},
+                envs=envs,
             )
             return BashExecResponse(
                 message=f"Command executed on E2B (exit {result.exit_code})",

autogpt_platform/backend/backend/copilot/tools/bash_exec_test.py

@@ -0,0 +1,78 @@
+"""Tests for BashExecTool — E2B path with token injection."""
+
+from unittest.mock import AsyncMock, MagicMock, patch
+
+import pytest
+
+from ._test_data import make_session
+from .bash_exec import BashExecTool
+from .models import BashExecResponse
+
+_USER = "user-bash-exec-test"
+
+
+def _make_tool() -> BashExecTool:
+    return BashExecTool()
+
+
+def _make_sandbox(exit_code: int = 0, stdout: str = "", stderr: str = "") -> MagicMock:
+    result = MagicMock()
+    result.exit_code = exit_code
+    result.stdout = stdout
+    result.stderr = stderr
+
+    sandbox = MagicMock()
+    sandbox.commands.run = AsyncMock(return_value=result)
+    return sandbox
+
+
+class TestBashExecE2BTokenInjection:
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_token_injected_when_user_id_set(self):
+        """When user_id is provided, integration env vars are merged into sandbox envs."""
+        tool = _make_tool()
+        session = make_session(user_id=_USER)
+        sandbox = _make_sandbox(stdout="ok")
+        env_vars = {"GH_TOKEN": "gh-secret", "GITHUB_TOKEN": "gh-secret"}
+
+        with patch(
+            "backend.copilot.tools.bash_exec.get_integration_env_vars",
+            new=AsyncMock(return_value=env_vars),
+        ) as mock_get_env:
+            result = await tool._execute_on_e2b(
+                sandbox=sandbox,
+                command="echo hi",
+                timeout=10,
+                session_id=session.session_id,
+                user_id=_USER,
+            )
+
+        mock_get_env.assert_awaited_once_with(_USER)
+        call_kwargs = sandbox.commands.run.call_args[1]
+        assert call_kwargs["envs"]["GH_TOKEN"] == "gh-secret"
+        assert call_kwargs["envs"]["GITHUB_TOKEN"] == "gh-secret"
+        assert isinstance(result, BashExecResponse)
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_no_token_injection_when_user_id_is_none(self):
+        """When user_id is None, get_integration_env_vars must NOT be called."""
+        tool = _make_tool()
+        session = make_session(user_id=_USER)
+        sandbox = _make_sandbox(stdout="ok")
+
+        with patch(
+            "backend.copilot.tools.bash_exec.get_integration_env_vars",
+            new=AsyncMock(return_value={"GH_TOKEN": "should-not-appear"}),
+        ) as mock_get_env:
+            result = await tool._execute_on_e2b(
+                sandbox=sandbox,
+                command="echo hi",
+                timeout=10,
+                session_id=session.session_id,
+                user_id=None,
+            )
+
+        mock_get_env.assert_not_called()
+        call_kwargs = sandbox.commands.run.call_args[1]
+        assert "GH_TOKEN" not in call_kwargs["envs"]
+        assert isinstance(result, BashExecResponse)

autogpt_platform/backend/backend/copilot/tools/connect_integration.py

@@ -0,0 +1,215 @@
+"""Tool for prompting the user to connect a required integration.
+
+When the copilot encounters an authentication failure (e.g. `gh` CLI returns
+"authentication required"), it calls this tool to surface the credentials
+setup card in the chat — the same UI that appears when a GitHub block runs
+without configured credentials.
+"""
+
+import functools
+from typing import Any, TypedDict
+
+from backend.copilot.model import ChatSession
+from backend.copilot.tools.models import (
+    ErrorResponse,
+    ResponseType,
+    SetupInfo,
+    SetupRequirementsResponse,
+    ToolResponseBase,
+    UserReadiness,
+)
+
+from .base import BaseTool
+
+
+class _ProviderInfo(TypedDict):
+    name: str
+    types: list[str]
+    # Default OAuth scopes requested when the agent doesn't specify any.
+    scopes: list[str]
+
+
+class _CredentialEntry(TypedDict):
+    """Shape of each entry inside SetupRequirementsResponse.user_readiness.missing_credentials."""
+
+    id: str
+    title: str
+    provider: str
+    provider_name: str
+    type: str
+    types: list[str]
+    scopes: list[str]
+
+
+@functools.lru_cache(maxsize=1)
+def _is_github_oauth_configured() -> bool:
+    """Return True if GitHub OAuth env vars are set.
+
+    Evaluated lazily (not at import time) to avoid triggering Secrets() during
+    module import, which can fail in environments where secrets are not loaded.
+    """
+    from backend.blocks.github._auth import GITHUB_OAUTH_IS_CONFIGURED
+
+    return GITHUB_OAUTH_IS_CONFIGURED
+
+
+# Registry of known providers: name + supported credential types for the UI.
+# When adding a new provider, also add its env var names to
+# backend.copilot.integration_creds.PROVIDER_ENV_VARS.
+def _get_provider_info() -> dict[str, _ProviderInfo]:
+    """Build the provider registry, evaluating OAuth config lazily."""
+    return {
+        "github": {
+            "name": "GitHub",
+            "types": (
+                ["api_key", "oauth2"] if _is_github_oauth_configured() else ["api_key"]
+            ),
+            # Default: repo scope covers clone/push/pull for public and private repos.
+            # Agent can request additional scopes (e.g. "read:org") via the scopes param.
+            "scopes": ["repo"],
+        },
+    }
+
+
+class ConnectIntegrationTool(BaseTool):
+    """Surface the credentials setup UI when an integration is not connected."""
+
+    @property
+    def name(self) -> str:
+        return "connect_integration"
+
+    @property
+    def description(self) -> str:
+        return (
+            "Prompt the user to connect a required integration (e.g. GitHub). "
+            "Call this when an external CLI or API call fails because the user "
+            "has not connected the relevant account. "
+            "The tool surfaces a credentials setup card in the chat so the user "
+            "can authenticate without leaving the page. "
+            "After the user connects the account, retry the operation. "
+            "In E2B/cloud sandbox mode the token (GH_TOKEN/GITHUB_TOKEN) is "
+            "automatically injected per-command in bash_exec — no manual export needed. "
+            "In local bubblewrap mode network is isolated so GitHub CLI commands "
+            "will still fail after connecting; inform the user of this limitation."
+        )
+
+    @property
+    def parameters(self) -> dict[str, Any]:
+        return {
+            "type": "object",
+            "properties": {
+                "provider": {
+                    "type": "string",
+                    "description": (
+                        "Integration provider slug, e.g. 'github'. "
+                        "Must be one of the supported providers."
+                    ),
+                    "enum": list(_get_provider_info().keys()),
+                },
+                "reason": {
+                    "type": "string",
+                    "description": (
+                        "Brief explanation of why the integration is needed, "
+                        "shown to the user in the setup card."
+                    ),
+                    "maxLength": 500,
+                },
+                "scopes": {
+                    "type": "array",
+                    "items": {"type": "string"},
+                    "description": (
+                        "OAuth scopes to request. Omit to use the provider default. "
+                        "Add extra scopes when you need more access — e.g. for GitHub: "
+                        "'repo' (clone/push/pull), 'read:org' (org membership), "
+                        "'workflow' (GitHub Actions). "
+                        "Requesting only the scopes you actually need is best practice."
+                    ),
+                },
+            },
+            "required": ["provider"],
+        }
+
+    @property
+    def requires_auth(self) -> bool:
+        # Require auth so only authenticated users can trigger the setup card.
+        # The card itself is user-agnostic (no per-user data needed), so
+        # user_id is intentionally unused in _execute.
+        return True
+
+    async def _execute(
+        self,
+        user_id: str | None,
+        session: ChatSession,
+        **kwargs: Any,
+    ) -> ToolResponseBase:
+        del user_id  # setup card is user-agnostic; auth is enforced via requires_auth
+        session_id = session.session_id if session else None
+        provider: str = (kwargs.get("provider") or "").strip().lower()
+        reason: str = (kwargs.get("reason") or "").strip()[
+            :500
+        ]  # cap LLM-controlled text
+        extra_scopes: list[str] = [
+            str(s).strip() for s in (kwargs.get("scopes") or []) if str(s).strip()
+        ]
+
+        provider_info = _get_provider_info()
+        info = provider_info.get(provider)
+        if not info:
+            supported = ", ".join(f"'{p}'" for p in provider_info)
+            return ErrorResponse(
+                message=(
+                    f"Unknown provider '{provider}'. "
+                    f"Supported providers: {supported}."
+                ),
+                error="unknown_provider",
+                session_id=session_id,
+            )
+
+        provider_name: str = info["name"]
+        supported_types: list[str] = info["types"]
+        # Merge agent-requested scopes with provider defaults (deduplicated, order preserved).
+        default_scopes: list[str] = info["scopes"]
+        seen: set[str] = set()
+        scopes: list[str] = []
+        for s in default_scopes + extra_scopes:
+            if s not in seen:
+                seen.add(s)
+                scopes.append(s)
+        field_key = f"{provider}_credentials"
+
+        message_parts = [
+            f"To continue, please connect your {provider_name} account.",
+        ]
+        if reason:
+            message_parts.append(reason)
+
+        credential_entry: _CredentialEntry = {
+            "id": field_key,
+            "title": f"{provider_name} Credentials",
+            "provider": provider,
+            "provider_name": provider_name,
+            "type": supported_types[0],
+            "types": supported_types,
+            "scopes": scopes,
+        }
+        missing_credentials: dict[str, _CredentialEntry] = {field_key: credential_entry}
+
+        return SetupRequirementsResponse(
+            type=ResponseType.SETUP_REQUIREMENTS,
+            message=" ".join(message_parts),
+            session_id=session_id,
+            setup_info=SetupInfo(
+                agent_id=f"connect_{provider}",
+                agent_name=provider_name,
+                user_readiness=UserReadiness(
+                    has_all_credentials=False,
+                    missing_credentials=missing_credentials,
+                    ready_to_run=False,
+                ),
+                requirements={
+                    "credentials": [missing_credentials[field_key]],
+                    "inputs": [],
+                    "execution_modes": [],
+                },
+            ),
+        )

autogpt_platform/backend/backend/copilot/tools/connect_integration_test.py

@@ -0,0 +1,135 @@
+"""Tests for ConnectIntegrationTool."""
+
+import pytest
+
+from ._test_data import make_session
+from .connect_integration import ConnectIntegrationTool
+from .models import ErrorResponse, SetupRequirementsResponse
+
+_TEST_USER_ID = "test-user-connect-integration"
+
+
+class TestConnectIntegrationTool:
+    def _make_tool(self) -> ConnectIntegrationTool:
+        return ConnectIntegrationTool()
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_unknown_provider_returns_error(self):
+        tool = self._make_tool()
+        session = make_session(user_id=_TEST_USER_ID)
+        result = await tool._execute(
+            user_id=_TEST_USER_ID, session=session, provider="nonexistent"
+        )
+        assert isinstance(result, ErrorResponse)
+        assert result.error == "unknown_provider"
+        assert "nonexistent" in result.message
+        assert "github" in result.message
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_empty_provider_returns_error(self):
+        tool = self._make_tool()
+        session = make_session(user_id=_TEST_USER_ID)
+        result = await tool._execute(
+            user_id=_TEST_USER_ID, session=session, provider=""
+        )
+        assert isinstance(result, ErrorResponse)
+        assert result.error == "unknown_provider"
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_github_provider_returns_setup_response(self):
+        tool = self._make_tool()
+        session = make_session(user_id=_TEST_USER_ID)
+        result = await tool._execute(
+            user_id=_TEST_USER_ID, session=session, provider="github"
+        )
+        assert isinstance(result, SetupRequirementsResponse)
+        assert result.setup_info.agent_name == "GitHub"
+        assert result.setup_info.agent_id == "connect_github"
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_github_has_missing_credentials_in_readiness(self):
+        tool = self._make_tool()
+        session = make_session(user_id=_TEST_USER_ID)
+        result = await tool._execute(
+            user_id=_TEST_USER_ID, session=session, provider="github"
+        )
+        assert isinstance(result, SetupRequirementsResponse)
+        readiness = result.setup_info.user_readiness
+        assert readiness.has_all_credentials is False
+        assert readiness.ready_to_run is False
+        assert "github_credentials" in readiness.missing_credentials
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_github_requirements_include_credential_entry(self):
+        tool = self._make_tool()
+        session = make_session(user_id=_TEST_USER_ID)
+        result = await tool._execute(
+            user_id=_TEST_USER_ID, session=session, provider="github"
+        )
+        assert isinstance(result, SetupRequirementsResponse)
+        creds = result.setup_info.requirements["credentials"]
+        assert len(creds) == 1
+        assert creds[0]["provider"] == "github"
+        assert creds[0]["id"] == "github_credentials"
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_reason_appears_in_message(self):
+        tool = self._make_tool()
+        session = make_session(user_id=_TEST_USER_ID)
+        reason = "Needed to create a pull request."
+        result = await tool._execute(
+            user_id=_TEST_USER_ID, session=session, provider="github", reason=reason
+        )
+        assert isinstance(result, SetupRequirementsResponse)
+        assert reason in result.message
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_session_id_propagated(self):
+        tool = self._make_tool()
+        session = make_session(user_id=_TEST_USER_ID)
+        result = await tool._execute(
+            user_id=_TEST_USER_ID, session=session, provider="github"
+        )
+        assert isinstance(result, SetupRequirementsResponse)
+        assert result.session_id == session.session_id
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_provider_case_insensitive(self):
+        """Provider slug is normalised to lowercase before lookup."""
+        tool = self._make_tool()
+        session = make_session(user_id=_TEST_USER_ID)
+        result = await tool._execute(
+            user_id=_TEST_USER_ID, session=session, provider="GitHub"
+        )
+        assert isinstance(result, SetupRequirementsResponse)
+
+    def test_tool_name(self):
+        assert ConnectIntegrationTool().name == "connect_integration"
+
+    def test_requires_auth(self):
+        assert ConnectIntegrationTool().requires_auth is True
+
+    @pytest.mark.asyncio(loop_scope="session")
+    async def test_unauthenticated_user_gets_need_login_response(self):
+        """execute() with user_id=None must return NeedLoginResponse, not the setup card.
+
+        This verifies that the requires_auth guard in BaseTool.execute() fires
+        before _execute() is called, so unauthenticated callers cannot probe
+        which integrations are configured.
+        """
+        import json
+
+        tool = self._make_tool()
+        # Session still needs a user_id string; the None is passed to execute()
+        # to simulate an unauthenticated call.
+        session = make_session(user_id=_TEST_USER_ID)
+        result = await tool.execute(
+            user_id=None,
+            session=session,
+            tool_call_id="test-call-id",
+            provider="github",
+        )
+        raw = result.output
+        output = json.loads(raw) if isinstance(raw, str) else raw
+        assert output.get("type") == "need_login"
+        assert result.success is False

autogpt_platform/backend/backend/copilot/tools/run_block.py

@@ -12,6 +12,7 @@ from backend.copilot.constants import (
     COPILOT_SESSION_PREFIX,
 )
 from backend.copilot.model import ChatSession
+from backend.copilot.sdk.file_ref import FileRefExpansionError, expand_file_refs_in_args
 from backend.data.db_accessors import review_db
 from backend.data.execution import ExecutionContext
 
@@ -197,6 +198,29 @@ class RunBlockTool(BaseTool):
                 session_id=session_id,
             )
 
+        # Expand @@agptfile: refs in input_data with the block's input
+        # schema.  The generic _truncating wrapper skips opaque object
+        # properties (input_data has no declared inner properties in the
+        # tool schema), so file ref tokens are still intact here.
+        # Using the block's schema lets us return raw text for string-typed
+        # fields and parsed structures for list/dict-typed fields.
+        if input_data:
+            try:
+                input_data = await expand_file_refs_in_args(
+                    input_data,
+                    user_id,
+                    session,
+                    input_schema=input_schema,
+                )
+            except FileRefExpansionError as exc:
+                return ErrorResponse(
+                    message=(
+                        f"Failed to resolve file reference: {exc}. "
+                        "Ensure the file exists before referencing it."
+                    ),
+                    session_id=session_id,
+                )
+
         if missing_credentials:
             # Return setup requirements response with missing credentials
             credentials_fields_info = block.input_schema.get_credentials_fields_info()

autogpt_platform/backend/backend/copilot/tools/workspace_files.py

@@ -10,11 +10,11 @@ from pydantic import BaseModel
 from backend.copilot.context import (
     E2B_WORKDIR,
     get_current_sandbox,
+    get_workspace_manager,
     resolve_sandbox_path,
 )
 from backend.copilot.model import ChatSession
 from backend.copilot.tools.sandbox import make_session_path
-from backend.data.db_accessors import workspace_db
 from backend.util.settings import Config
 from backend.util.virus_scanner import scan_content_safe
 from backend.util.workspace import WorkspaceManager
@@ -218,12 +218,6 @@ def _is_text_mime(mime_type: str) -> bool:
     return any(mime_type.startswith(t) for t in _TEXT_MIME_PREFIXES)
 
 
-async def get_manager(user_id: str, session_id: str) -> WorkspaceManager:
-    """Create a session-scoped WorkspaceManager."""
-    workspace = await workspace_db().get_or_create_workspace(user_id)
-    return WorkspaceManager(user_id, workspace.id, session_id)
-
-
 async def _resolve_file(
     manager: WorkspaceManager,
     file_id: str | None,
@@ -386,7 +380,7 @@ class ListWorkspaceFilesTool(BaseTool):
         include_all_sessions: bool = kwargs.get("include_all_sessions", False)
 
         try:
-            manager = await get_manager(user_id, session_id)
+            manager = await get_workspace_manager(user_id, session_id)
             files = await manager.list_files(
                 path=path_prefix, limit=limit, include_all_sessions=include_all_sessions
             )
@@ -536,7 +530,7 @@ class ReadWorkspaceFileTool(BaseTool):
             )
 
         try:
-            manager = await get_manager(user_id, session_id)
+            manager = await get_workspace_manager(user_id, session_id)
             resolved = await _resolve_file(manager, file_id, path, session_id)
             if isinstance(resolved, ErrorResponse):
                 return resolved
@@ -772,7 +766,7 @@ class WriteWorkspaceFileTool(BaseTool):
 
         try:
             await scan_content_safe(content, filename=filename)
-            manager = await get_manager(user_id, session_id)
+            manager = await get_workspace_manager(user_id, session_id)
             rec = await manager.write_file(
                 content=content,
                 filename=filename,
@@ -899,7 +893,7 @@ class DeleteWorkspaceFileTool(BaseTool):
             )
 
         try:
-            manager = await get_manager(user_id, session_id)
+            manager = await get_workspace_manager(user_id, session_id)
             resolved = await _resolve_file(manager, file_id, path, session_id)
             if isinstance(resolved, ErrorResponse):
                 return resolved

autogpt_platform/backend/backend/integrations/creds_manager.py

@@ -25,6 +25,35 @@ logger = logging.getLogger(__name__)
 settings = Settings()
 
 
+_on_creds_changed: Callable[[str, str], None] | None = None
+
+
+def register_creds_changed_hook(hook: Callable[[str, str], None]) -> None:
+    """Register a callback invoked after any credential is created/updated/deleted.
+
+    The callback receives ``(user_id, provider)`` and should be idempotent.
+    Only one hook can be registered at a time; calling this again replaces the
+    previous hook.  Intended to be called once at application startup by the
+    copilot module to bust its token cache without creating an import cycle.
+    """
+    global _on_creds_changed
+    _on_creds_changed = hook
+
+
+def _bust_copilot_cache(user_id: str, provider: str) -> None:
+    """Invoke the registered hook (if any) to bust downstream token caches."""
+    if _on_creds_changed is not None:
+        try:
+            _on_creds_changed(user_id, provider)
+        except Exception:
+            logger.warning(
+                "Credential-change hook failed for user=%s provider=%s",
+                user_id,
+                provider,
+                exc_info=True,
+            )
+
+
 class IntegrationCredentialsManager:
     """
     Handles the lifecycle of integration credentials.
@@ -69,7 +98,11 @@ class IntegrationCredentialsManager:
         return self._locks
 
     async def create(self, user_id: str, credentials: Credentials) -> None:
-        return await self.store.add_creds(user_id, credentials)
+        result = await self.store.add_creds(user_id, credentials)
+        # Bust the copilot token cache so that the next bash_exec picks up the
+        # new credential immediately instead of waiting for _NULL_CACHE_TTL.
+        _bust_copilot_cache(user_id, credentials.provider)
+        return result
 
     async def exists(self, user_id: str, credentials_id: str) -> bool:
         return (await self.store.get_creds_by_id(user_id, credentials_id)) is not None
@@ -156,6 +189,8 @@ class IntegrationCredentialsManager:
 
                 fresh_credentials = await oauth_handler.refresh_tokens(credentials)
                 await self.store.update_creds(user_id, fresh_credentials)
+                # Bust copilot cache so the refreshed token is picked up immediately.
+                _bust_copilot_cache(user_id, fresh_credentials.provider)
                 if _lock and (await _lock.locked()) and (await _lock.owned()):
                     try:
                         await _lock.release()
@@ -168,10 +203,17 @@ class IntegrationCredentialsManager:
     async def update(self, user_id: str, updated: Credentials) -> None:
         async with self._locked(user_id, updated.id):
             await self.store.update_creds(user_id, updated)
+        # Bust the copilot token cache so the updated credential is picked up immediately.
+        _bust_copilot_cache(user_id, updated.provider)
 
     async def delete(self, user_id: str, credentials_id: str) -> None:
         async with self._locked(user_id, credentials_id):
+            # Read inside the lock to avoid TOCTOU — another coroutine could
+            # delete the same credential between the read and the delete.
+            creds = await self.store.get_creds_by_id(user_id, credentials_id)
             await self.store.delete_creds_by_id(user_id, credentials_id)
+        if creds:
+            _bust_copilot_cache(user_id, creds.provider)
 
     # -- Locking utilities -- #
 

autogpt_platform/backend/backend/util/file.py

@@ -275,13 +275,12 @@ async def store_media_file(
     # Process file
     elif file.startswith("data:"):
         # Data URI
-        match = re.match(r"^data:([^;]+);base64,(.*)$", file, re.DOTALL)
-        if not match:
+        parsed_uri = parse_data_uri(file)
+        if parsed_uri is None:
             raise ValueError(
                 "Invalid data URI format. Expected data:<mime>;base64,<data>"
             )
-        mime_type = match.group(1).strip().lower()
-        b64_content = match.group(2).strip()
+        mime_type, b64_content = parsed_uri
 
         # Generate filename and decode
         extension = _extension_from_mime(mime_type)
@@ -415,13 +414,70 @@ def get_dir_size(path: Path) -> int:
     return total
 
 
+async def resolve_media_content(
+    content: MediaFileType,
+    execution_context: "ExecutionContext",
+    *,
+    return_format: MediaReturnFormat,
+) -> MediaFileType:
+    """Resolve a ``MediaFileType`` value if it is a media reference, pass through otherwise.
+
+    Convenience wrapper around :func:`is_media_file_ref` + :func:`store_media_file`.
+    Plain text content (source code, filenames) is returned unchanged.  Media
+    references (``data:``, ``workspace://``, ``http(s)://``) are resolved via
+    :func:`store_media_file` using *return_format*.
+
+    Use this when a block field is typed as ``MediaFileType`` but may contain
+    either literal text or a media reference.
+    """
+    if not content or not is_media_file_ref(content):
+        return content
+    return await store_media_file(
+        content, execution_context, return_format=return_format
+    )
+
+
+def is_media_file_ref(value: str) -> bool:
+    """Return True if *value* looks like a ``MediaFileType`` reference.
+
+    Detects data URIs, workspace:// references, and HTTP(S) URLs — the
+    formats accepted by :func:`store_media_file`.  Plain text content
+    (e.g. source code, filenames) returns False.
+
+    Known limitation: HTTP(S) URL detection is heuristic.  Any string that
+    starts with ``http://`` or ``https://`` is treated as a media URL, even
+    if it appears as a URL inside source-code comments or documentation.
+    Blocks that produce source code or Markdown as output may therefore
+    trigger false positives.  Callers that need higher precision should
+    inspect the string further (e.g. verify the URL is reachable or has a
+    media-friendly extension).
+
+    Note: this does *not* match local file paths, which are ambiguous
+    (could be filenames or actual paths).  Blocks that need to resolve
+    local paths should check for them separately.
+    """
+    return value.startswith(("data:", "workspace://", "http://", "https://"))
+
+
+def parse_data_uri(value: str) -> tuple[str, str] | None:
+    """Parse a ``data:<mime>;base64,<payload>`` URI.
+
+    Returns ``(mime_type, base64_payload)`` if *value* is a valid data URI,
+    or ``None`` if it is not.
+    """
+    match = re.match(r"^data:([^;]+);base64,(.*)$", value, re.DOTALL)
+    if not match:
+        return None
+    return match.group(1).strip().lower(), match.group(2).strip()
+
+
 def get_mime_type(file: str) -> str:
     """
     Get the MIME type of a file, whether it's a data URI, URL, or local path.
     """
     if file.startswith("data:"):
-        match = re.match(r"^data:([^;]+);base64,", file)
-        return match.group(1) if match else "application/octet-stream"
+        parsed_uri = parse_data_uri(file)
+        return parsed_uri[0] if parsed_uri else "application/octet-stream"
 
     elif file.startswith(("http://", "https://")):
         parsed_url = urlparse(file)

autogpt_platform/backend/backend/util/file_content_parser.py

@@ -0,0 +1,375 @@
+"""Parse file content into structured Python objects based on file format.
+
+Used by the ``@@agptfile:`` expansion system to eagerly parse well-known file
+formats into native Python types *before* schema-driven coercion runs.  This
+lets blocks with ``Any``-typed inputs receive structured data rather than raw
+strings, while blocks expecting strings get the value coerced back via
+``convert()``.
+
+Supported formats:
+
+- **JSON** (``.json``) — arrays and objects are promoted; scalars stay as strings
+- **JSON Lines** (``.jsonl``, ``.ndjson``) — each non-empty line parsed as JSON;
+  when all lines are dicts with the same keys (tabular data), output is
+  ``list[list[Any]]`` with a header row, consistent with CSV/Parquet/Excel;
+  otherwise returns a plain ``list`` of parsed values
+- **CSV** (``.csv``) — ``csv.reader`` → ``list[list[str]]``
+- **TSV** (``.tsv``) — tab-delimited → ``list[list[str]]``
+- **YAML** (``.yaml``, ``.yml``) — parsed via PyYAML; containers only
+- **TOML** (``.toml``) — parsed via stdlib ``tomllib``
+- **Parquet** (``.parquet``) — via pandas/pyarrow → ``list[list[Any]]`` with header row
+- **Excel** (``.xlsx``) — via pandas/openpyxl → ``list[list[Any]]`` with header row
+  (legacy ``.xls`` is **not** supported — only the modern OOXML format)
+
+The **fallback contract** is enforced by :func:`parse_file_content`, not by
+individual parser functions.  If any parser raises, ``parse_file_content``
+catches the exception and returns the original content unchanged (string for
+text formats, bytes for binary formats).  Callers should never see an
+exception from the public API when ``strict=False``.
+"""
+
+import csv
+import io
+import json
+import logging
+import tomllib
+import zipfile
+from collections.abc import Callable
+
+# posixpath.splitext handles forward-slash URI paths correctly on all platforms,
+# unlike os.path.splitext which uses platform-native separators.
+from posixpath import splitext
+from typing import Any
+
+import yaml
+
+logger = logging.getLogger(__name__)
+
+# ---------------------------------------------------------------------------
+# Extension / MIME → format label mapping
+# ---------------------------------------------------------------------------
+
+_EXT_TO_FORMAT: dict[str, str] = {
+    ".json": "json",
+    ".jsonl": "jsonl",
+    ".ndjson": "jsonl",
+    ".csv": "csv",
+    ".tsv": "tsv",
+    ".yaml": "yaml",
+    ".yml": "yaml",
+    ".toml": "toml",
+    ".parquet": "parquet",
+    ".xlsx": "xlsx",
+}
+
+MIME_TO_FORMAT: dict[str, str] = {
+    "application/json": "json",
+    "application/x-ndjson": "jsonl",
+    "application/jsonl": "jsonl",
+    "text/csv": "csv",
+    "text/tab-separated-values": "tsv",
+    "application/x-yaml": "yaml",
+    "application/yaml": "yaml",
+    "text/yaml": "yaml",
+    "application/toml": "toml",
+    "application/vnd.apache.parquet": "parquet",
+    "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet": "xlsx",
+}
+
+# Formats that require raw bytes rather than decoded text.
+BINARY_FORMATS: frozenset[str] = frozenset({"parquet", "xlsx"})
+
+
+# ---------------------------------------------------------------------------
+# Public API  (top-down: main functions first, helpers below)
+# ---------------------------------------------------------------------------
+
+
+def infer_format_from_uri(uri: str) -> str | None:
+    """Return a format label based on URI extension or MIME fragment.
+
+    Returns ``None`` when the format cannot be determined — the caller should
+    fall back to returning the content as a plain string.
+    """
+    # 1. Check MIME fragment  (workspace://abc123#application/json)
+    if "#" in uri:
+        _, fragment = uri.rsplit("#", 1)
+        fmt = MIME_TO_FORMAT.get(fragment.lower())
+        if fmt:
+            return fmt
+
+    # 2. Check file extension from the path portion.
+    #    Strip the fragment first so ".json#mime" doesn't confuse splitext.
+    path = uri.split("#")[0].split("?")[0]
+    _, ext = splitext(path)
+    fmt = _EXT_TO_FORMAT.get(ext.lower())
+    if fmt is not None:
+        return fmt
+
+    # Legacy .xls is not supported — map it so callers can produce a
+    # user-friendly error instead of returning garbled binary.
+    if ext.lower() == ".xls":
+        return "xls"
+
+    return None
+
+
+def parse_file_content(content: str | bytes, fmt: str, *, strict: bool = False) -> Any:
+    """Parse *content* according to *fmt* and return a native Python value.
+
+    When *strict* is ``False`` (default), returns the original *content*
+    unchanged if *fmt* is not recognised or parsing fails for any reason.
+    This mode **never raises**.
+
+    When *strict* is ``True``, parsing errors are propagated to the caller.
+    Unrecognised formats or type mismatches (e.g. text for a binary format)
+    still return *content* unchanged without raising.
+    """
+    if fmt == "xls":
+        return (
+            "[Unsupported format] Legacy .xls files are not supported. "
+            "Please re-save the file as .xlsx (Excel 2007+) and upload again."
+        )
+
+    try:
+        if fmt in BINARY_FORMATS:
+            parser = _BINARY_PARSERS.get(fmt)
+            if parser is None:
+                return content
+            if isinstance(content, str):
+                # Caller gave us text for a binary format — can't parse.
+                return content
+            return parser(content)
+
+        parser = _TEXT_PARSERS.get(fmt)
+        if parser is None:
+            return content
+        if isinstance(content, bytes):
+            content = content.decode("utf-8", errors="replace")
+        return parser(content)
+
+    except PARSE_EXCEPTIONS:
+        if strict:
+            raise
+        logger.debug("Structured parsing failed for format=%s, falling back", fmt)
+        return content
+
+
+# ---------------------------------------------------------------------------
+# Exception loading helpers
+# ---------------------------------------------------------------------------
+
+
+def _load_openpyxl_exception() -> type[Exception]:
+    """Return openpyxl's InvalidFileException, raising ImportError if absent."""
+    from openpyxl.utils.exceptions import InvalidFileException  # noqa: PLC0415
+
+    return InvalidFileException
+
+
+def _load_arrow_exception() -> type[Exception]:
+    """Return pyarrow's ArrowException, raising ImportError if absent."""
+    from pyarrow import ArrowException  # noqa: PLC0415
+
+    return ArrowException
+
+
+def _optional_exc(loader: "Callable[[], type[Exception]]") -> "type[Exception] | None":
+    """Return the exception class from *loader*, or ``None`` if the dep is absent."""
+    try:
+        return loader()
+    except ImportError:
+        return None
+
+
+# Exception types that can be raised during file content parsing.
+# Shared between ``parse_file_content`` (which catches them in non-strict mode)
+# and ``file_ref._expand_bare_ref`` (which re-raises them as FileRefExpansionError).
+#
+# Optional-dependency exception types are loaded via a helper that raises
+# ``ImportError`` at *parse time* rather than silently becoming ``None`` here.
+# This ensures mypy sees clean types and missing deps surface as real errors.
+PARSE_EXCEPTIONS: tuple[type[BaseException], ...] = tuple(
+    exc
+    for exc in (
+        json.JSONDecodeError,
+        csv.Error,
+        yaml.YAMLError,
+        tomllib.TOMLDecodeError,
+        ValueError,
+        UnicodeDecodeError,
+        ImportError,
+        OSError,
+        KeyError,
+        TypeError,
+        zipfile.BadZipFile,
+        _optional_exc(_load_openpyxl_exception),
+        # ArrowException covers ArrowIOError and ArrowCapacityError which
+        # do not inherit from standard exceptions; ArrowInvalid/ArrowTypeError
+        # already map to ValueError/TypeError but this catches the rest.
+        _optional_exc(_load_arrow_exception),
+    )
+    if exc is not None
+)
+
+
+# ---------------------------------------------------------------------------
+# Text-based parsers  (content: str → Any)
+# ---------------------------------------------------------------------------
+
+
+def _parse_container(parser: Callable[[str], Any], content: str) -> list | dict | str:
+    """Parse *content* and return the result only if it is a container (list/dict).
+
+    Scalar values (strings, numbers, booleans, None) are discarded and the
+    original *content* string is returned instead.  This prevents e.g. a JSON
+    file containing just ``"42"`` from silently becoming an int.
+    """
+    parsed = parser(content)
+    if isinstance(parsed, (list, dict)):
+        return parsed
+    return content
+
+
+def _parse_json(content: str) -> list | dict | str:
+    return _parse_container(json.loads, content)
+
+
+def _parse_jsonl(content: str) -> Any:
+    lines = [json.loads(line) for line in content.splitlines() if line.strip()]
+    if not lines:
+        return content
+
+    # When every line is a dict with the same keys, convert to table format
+    # (header row + data rows) — consistent with CSV/TSV/Parquet/Excel output.
+    # Require ≥2 dicts so a single-line JSONL stays as [dict] (not a table).
+    if len(lines) >= 2 and all(isinstance(obj, dict) for obj in lines):
+        keys = list(lines[0].keys())
+        # Cache as tuple to avoid O(n×k) list allocations in the all() call.
+        keys_tuple = tuple(keys)
+        if keys and all(tuple(obj.keys()) == keys_tuple for obj in lines[1:]):
+            return [keys] + [[obj[k] for k in keys] for obj in lines]
+
+    return lines
+
+
+def _parse_csv(content: str) -> Any:
+    return _parse_delimited(content, delimiter=",")
+
+
+def _parse_tsv(content: str) -> Any:
+    return _parse_delimited(content, delimiter="\t")
+
+
+def _parse_delimited(content: str, *, delimiter: str) -> Any:
+    reader = csv.reader(io.StringIO(content), delimiter=delimiter)
+    # csv.reader never yields [] — blank lines yield [""]. Filter out
+    # rows where every cell is empty (i.e. truly blank lines).
+    rows = [row for row in reader if _row_has_content(row)]
+    if not rows:
+        return content
+    # If the declared delimiter produces only single-column rows, try
+    # sniffing the actual delimiter — catches misidentified files (e.g.
+    # a tab-delimited file with a .csv extension).
+    if len(rows[0]) == 1:
+        try:
+            dialect = csv.Sniffer().sniff(content[:8192])
+            if dialect.delimiter != delimiter:
+                reader = csv.reader(io.StringIO(content), dialect)
+                rows = [row for row in reader if _row_has_content(row)]
+        except csv.Error:
+            pass
+    if rows and len(rows[0]) >= 2:
+        return rows
+    return content
+
+
+def _row_has_content(row: list[str]) -> bool:
+    """Return True when *row* contains at least one non-empty cell.
+
+    ``csv.reader`` never yields ``[]`` — truly blank lines yield ``[""]``.
+    This predicate filters those out consistently across the initial read
+    and the sniffer-fallback re-read.
+    """
+    return any(cell for cell in row)
+
+
+def _parse_yaml(content: str) -> list | dict | str:
+    # NOTE: YAML anchor/alias expansion can amplify input beyond the 10MB cap.
+    # safe_load prevents code execution; for production hardening consider
+    # a YAML parser with expansion limits (e.g. ruamel.yaml with max_alias_count).
+    if "\n---" in content or content.startswith("---\n"):
+        # Multi-document YAML: only the first document is parsed; the rest
+        # are silently ignored by yaml.safe_load.  Warn so callers are aware.
+        logger.warning(
+            "Multi-document YAML detected (--- separator); "
+            "only the first document will be parsed."
+        )
+    return _parse_container(yaml.safe_load, content)
+
+
+def _parse_toml(content: str) -> Any:
+    parsed = tomllib.loads(content)
+    # tomllib.loads always returns a dict — return it even if empty.
+    return parsed
+
+
+_TEXT_PARSERS: dict[str, Callable[[str], Any]] = {
+    "json": _parse_json,
+    "jsonl": _parse_jsonl,
+    "csv": _parse_csv,
+    "tsv": _parse_tsv,
+    "yaml": _parse_yaml,
+    "toml": _parse_toml,
+}
+
+# ---------------------------------------------------------------------------
+# Binary-based parsers  (content: bytes → Any)
+# ---------------------------------------------------------------------------
+
+
+def _parse_parquet(content: bytes) -> list[list[Any]]:
+    import pandas as pd
+
+    df = pd.read_parquet(io.BytesIO(content))
+    return _df_to_rows(df)
+
+
+def _parse_xlsx(content: bytes) -> list[list[Any]]:
+    import pandas as pd
+
+    # Explicitly specify openpyxl engine; the default engine varies by pandas
+    # version and does not support legacy .xls (which is excluded by our format map).
+    df = pd.read_excel(io.BytesIO(content), engine="openpyxl")
+    return _df_to_rows(df)
+
+
+def _df_to_rows(df: Any) -> list[list[Any]]:
+    """Convert a DataFrame to ``list[list[Any]]`` with a header row.
+
+    NaN values are replaced with ``None`` so the result is JSON-serializable.
+    Uses explicit cell-level checking because ``df.where(df.notna(), None)``
+    silently converts ``None`` back to ``NaN`` in float64 columns.
+    """
+    header = df.columns.tolist()
+    rows = [
+        [None if _is_nan(cell) else cell for cell in row] for row in df.values.tolist()
+    ]
+    return [header] + rows
+
+
+def _is_nan(cell: Any) -> bool:
+    """Check if a cell value is NaN, handling non-scalar types (lists, dicts).
+
+    ``pd.isna()`` on a list/dict returns a boolean array which raises
+    ``ValueError`` in a boolean context.  Guard with a scalar check first.
+    """
+    import pandas as pd
+
+    return bool(pd.api.types.is_scalar(cell) and pd.isna(cell))
+
+
+_BINARY_PARSERS: dict[str, Callable[[bytes], Any]] = {
+    "parquet": _parse_parquet,
+    "xlsx": _parse_xlsx,
+}

autogpt_platform/backend/backend/util/file_content_parser_test.py

@@ -0,0 +1,624 @@
+"""Tests for file_content_parser — format inference and structured parsing."""
+
+import io
+import json
+
+import pytest
+
+from backend.util.file_content_parser import (
+    BINARY_FORMATS,
+    infer_format_from_uri,
+    parse_file_content,
+)
+
+# ---------------------------------------------------------------------------
+# infer_format_from_uri
+# ---------------------------------------------------------------------------
+
+
+class TestInferFormat:
+    # --- extension-based ---
+
+    def test_json_extension(self):
+        assert infer_format_from_uri("/home/user/data.json") == "json"
+
+    def test_jsonl_extension(self):
+        assert infer_format_from_uri("/tmp/events.jsonl") == "jsonl"
+
+    def test_ndjson_extension(self):
+        assert infer_format_from_uri("/tmp/events.ndjson") == "jsonl"
+
+    def test_csv_extension(self):
+        assert infer_format_from_uri("workspace:///reports/sales.csv") == "csv"
+
+    def test_tsv_extension(self):
+        assert infer_format_from_uri("/home/user/data.tsv") == "tsv"
+
+    def test_yaml_extension(self):
+        assert infer_format_from_uri("/home/user/config.yaml") == "yaml"
+
+    def test_yml_extension(self):
+        assert infer_format_from_uri("/home/user/config.yml") == "yaml"
+
+    def test_toml_extension(self):
+        assert infer_format_from_uri("/home/user/config.toml") == "toml"
+
+    def test_parquet_extension(self):
+        assert infer_format_from_uri("/data/table.parquet") == "parquet"
+
+    def test_xlsx_extension(self):
+        assert infer_format_from_uri("/data/spreadsheet.xlsx") == "xlsx"
+
+    def test_xls_extension_returns_xls_label(self):
+        # Legacy .xls is mapped so callers can produce a helpful error.
+        assert infer_format_from_uri("/data/old_spreadsheet.xls") == "xls"
+
+    def test_case_insensitive(self):
+        assert infer_format_from_uri("/data/FILE.JSON") == "json"
+        assert infer_format_from_uri("/data/FILE.CSV") == "csv"
+
+    def test_unicode_filename(self):
+        assert infer_format_from_uri("/home/user/\u30c7\u30fc\u30bf.json") == "json"
+        assert infer_format_from_uri("/home/user/\u00e9t\u00e9.csv") == "csv"
+
+    def test_unknown_extension(self):
+        assert infer_format_from_uri("/home/user/readme.txt") is None
+
+    def test_no_extension(self):
+        assert infer_format_from_uri("workspace://abc123") is None
+
+    # --- MIME-based ---
+
+    def test_mime_json(self):
+        assert infer_format_from_uri("workspace://abc123#application/json") == "json"
+
+    def test_mime_csv(self):
+        assert infer_format_from_uri("workspace://abc123#text/csv") == "csv"
+
+    def test_mime_tsv(self):
+        assert (
+            infer_format_from_uri("workspace://abc123#text/tab-separated-values")
+            == "tsv"
+        )
+
+    def test_mime_ndjson(self):
+        assert (
+            infer_format_from_uri("workspace://abc123#application/x-ndjson") == "jsonl"
+        )
+
+    def test_mime_yaml(self):
+        assert infer_format_from_uri("workspace://abc123#application/x-yaml") == "yaml"
+
+    def test_mime_xlsx(self):
+        uri = "workspace://abc123#application/vnd.openxmlformats-officedocument.spreadsheetml.sheet"
+        assert infer_format_from_uri(uri) == "xlsx"
+
+    def test_mime_parquet(self):
+        assert (
+            infer_format_from_uri("workspace://abc123#application/vnd.apache.parquet")
+            == "parquet"
+        )
+
+    def test_unknown_mime(self):
+        assert infer_format_from_uri("workspace://abc123#text/plain") is None
+
+    def test_unknown_mime_falls_through_to_extension(self):
+        # Unknown MIME (text/plain) should fall through to extension-based detection.
+        assert infer_format_from_uri("workspace:///data.csv#text/plain") == "csv"
+
+    # --- MIME takes precedence over extension ---
+
+    def test_mime_overrides_extension(self):
+        # .txt extension but JSON MIME → json
+        assert infer_format_from_uri("workspace:///file.txt#application/json") == "json"
+
+
+# ---------------------------------------------------------------------------
+# parse_file_content — JSON
+# ---------------------------------------------------------------------------
+
+
+class TestParseJson:
+    def test_array(self):
+        result = parse_file_content("[1, 2, 3]", "json")
+        assert result == [1, 2, 3]
+
+    def test_object(self):
+        result = parse_file_content('{"key": "value"}', "json")
+        assert result == {"key": "value"}
+
+    def test_nested(self):
+        content = json.dumps({"rows": [[1, 2], [3, 4]]})
+        result = parse_file_content(content, "json")
+        assert result == {"rows": [[1, 2], [3, 4]]}
+
+    def test_scalar_string_stays_as_string(self):
+        result = parse_file_content('"hello"', "json")
+        assert result == '"hello"'  # original content, not parsed
+
+    def test_scalar_number_stays_as_string(self):
+        result = parse_file_content("42", "json")
+        assert result == "42"
+
+    def test_scalar_boolean_stays_as_string(self):
+        result = parse_file_content("true", "json")
+        assert result == "true"
+
+    def test_null_stays_as_string(self):
+        result = parse_file_content("null", "json")
+        assert result == "null"
+
+    def test_invalid_json_fallback(self):
+        content = "not json at all"
+        result = parse_file_content(content, "json")
+        assert result == content
+
+    def test_empty_string_fallback(self):
+        result = parse_file_content("", "json")
+        assert result == ""
+
+    def test_bytes_input_decoded(self):
+        result = parse_file_content(b"[1, 2, 3]", "json")
+        assert result == [1, 2, 3]
+
+
+# ---------------------------------------------------------------------------
+# parse_file_content — JSONL
+# ---------------------------------------------------------------------------
+
+
+class TestParseJsonl:
+    def test_tabular_uniform_dicts_to_table_format(self):
+        """JSONL with uniform dict keys → table format (header + rows),
+        consistent with CSV/TSV/Parquet/Excel output."""
+        content = '{"name":"apple","color":"red"}\n{"name":"banana","color":"yellow"}\n{"name":"cherry","color":"red"}'
+        result = parse_file_content(content, "jsonl")
+        assert result == [
+            ["name", "color"],
+            ["apple", "red"],
+            ["banana", "yellow"],
+            ["cherry", "red"],
+        ]
+
+    def test_tabular_single_key_dicts(self):
+        """JSONL with single-key uniform dicts → table format."""
+        content = '{"a": 1}\n{"a": 2}\n{"a": 3}'
+        result = parse_file_content(content, "jsonl")
+        assert result == [["a"], [1], [2], [3]]
+
+    def test_tabular_blank_lines_skipped(self):
+        content = '{"a": 1}\n\n{"a": 2}\n'
+        result = parse_file_content(content, "jsonl")
+        assert result == [["a"], [1], [2]]
+
+    def test_heterogeneous_dicts_stay_as_list(self):
+        """JSONL with different keys across objects → list of dicts (no table)."""
+        content = '{"name":"apple"}\n{"color":"red"}\n{"size":3}'
+        result = parse_file_content(content, "jsonl")
+        assert result == [{"name": "apple"}, {"color": "red"}, {"size": 3}]
+
+    def test_partially_overlapping_keys_stay_as_list(self):
+        """JSONL dicts with partially overlapping keys → list of dicts."""
+        content = '{"name":"apple","color":"red"}\n{"name":"banana","size":"medium"}'
+        result = parse_file_content(content, "jsonl")
+        assert result == [
+            {"name": "apple", "color": "red"},
+            {"name": "banana", "size": "medium"},
+        ]
+
+    def test_mixed_types_stay_as_list(self):
+        """JSONL with non-dict lines → list of parsed values (no table)."""
+        content = '1\n"hello"\n[1,2]\n'
+        result = parse_file_content(content, "jsonl")
+        assert result == [1, "hello", [1, 2]]
+
+    def test_mixed_dicts_and_non_dicts_stay_as_list(self):
+        """JSONL mixing dicts and non-dicts → list of parsed values."""
+        content = '{"a": 1}\n42\n{"b": 2}'
+        result = parse_file_content(content, "jsonl")
+        assert result == [{"a": 1}, 42, {"b": 2}]
+
+    def test_tabular_preserves_key_order(self):
+        """Table header should follow the key order of the first object."""
+        content = '{"z": 1, "a": 2}\n{"z": 3, "a": 4}'
+        result = parse_file_content(content, "jsonl")
+        assert result[0] == ["z", "a"]  # order from first object
+        assert result[1] == [1, 2]
+        assert result[2] == [3, 4]
+
+    def test_single_dict_stays_as_list(self):
+        """Single-line JSONL with one dict → [dict], NOT a table.
+        Tabular detection requires ≥2 dicts to avoid vacuously true all()."""
+        content = '{"a": 1, "b": 2}'
+        result = parse_file_content(content, "jsonl")
+        assert result == [{"a": 1, "b": 2}]
+
+    def test_tabular_with_none_values(self):
+        """Uniform keys but some null values → table with None cells."""
+        content = '{"name":"apple","color":"red"}\n{"name":"banana","color":null}'
+        result = parse_file_content(content, "jsonl")
+        assert result == [
+            ["name", "color"],
+            ["apple", "red"],
+            ["banana", None],
+        ]
+
+    def test_empty_file_fallback(self):
+        result = parse_file_content("", "jsonl")
+        assert result == ""
+
+    def test_all_blank_lines_fallback(self):
+        result = parse_file_content("\n\n\n", "jsonl")
+        assert result == "\n\n\n"
+
+    def test_invalid_line_fallback(self):
+        content = '{"a": 1}\nnot json\n'
+        result = parse_file_content(content, "jsonl")
+        assert result == content  # fallback
+
+
+# ---------------------------------------------------------------------------
+# parse_file_content — CSV
+# ---------------------------------------------------------------------------
+
+
+class TestParseCsv:
+    def test_basic(self):
+        content = "Name,Score\nAlice,90\nBob,85"
+        result = parse_file_content(content, "csv")
+        assert result == [["Name", "Score"], ["Alice", "90"], ["Bob", "85"]]
+
+    def test_quoted_fields(self):
+        content = 'Name,Bio\nAlice,"Loves, commas"\nBob,Simple'
+        result = parse_file_content(content, "csv")
+        assert result[1] == ["Alice", "Loves, commas"]
+
+    def test_single_column_fallback(self):
+        # Only 1 column — not tabular enough.
+        content = "Name\nAlice\nBob"
+        result = parse_file_content(content, "csv")
+        assert result == content
+
+    def test_empty_rows_skipped(self):
+        content = "A,B\n\n1,2\n\n3,4"
+        result = parse_file_content(content, "csv")
+        assert result == [["A", "B"], ["1", "2"], ["3", "4"]]
+
+    def test_empty_file_fallback(self):
+        result = parse_file_content("", "csv")
+        assert result == ""
+
+    def test_utf8_bom(self):
+        """CSV with a UTF-8 BOM should parse correctly (BOM stripped by decode)."""
+        bom = "\ufeff"
+        content = bom + "Name,Score\nAlice,90\nBob,85"
+        result = parse_file_content(content, "csv")
+        # The BOM may be part of the first header cell; ensure rows are still parsed.
+        assert len(result) == 3
+        assert result[1] == ["Alice", "90"]
+        assert result[2] == ["Bob", "85"]
+
+
+# ---------------------------------------------------------------------------
+# parse_file_content — TSV
+# ---------------------------------------------------------------------------
+
+
+class TestParseTsv:
+    def test_basic(self):
+        content = "Name\tScore\nAlice\t90\nBob\t85"
+        result = parse_file_content(content, "tsv")
+        assert result == [["Name", "Score"], ["Alice", "90"], ["Bob", "85"]]
+
+    def test_single_column_fallback(self):
+        content = "Name\nAlice\nBob"
+        result = parse_file_content(content, "tsv")
+        assert result == content
+
+
+# ---------------------------------------------------------------------------
+# parse_file_content — YAML
+# ---------------------------------------------------------------------------
+
+
+class TestParseYaml:
+    def test_list(self):
+        content = "- apple\n- banana\n- cherry"
+        result = parse_file_content(content, "yaml")
+        assert result == ["apple", "banana", "cherry"]
+
+    def test_dict(self):
+        content = "name: Alice\nage: 30"
+        result = parse_file_content(content, "yaml")
+        assert result == {"name": "Alice", "age": 30}
+
+    def test_nested(self):
+        content = "users:\n  - name: Alice\n  - name: Bob"
+        result = parse_file_content(content, "yaml")
+        assert result == {"users": [{"name": "Alice"}, {"name": "Bob"}]}
+
+    def test_scalar_stays_as_string(self):
+        result = parse_file_content("hello world", "yaml")
+        assert result == "hello world"
+
+    def test_invalid_yaml_fallback(self):
+        content = ":\n  :\n    invalid: - -"
+        result = parse_file_content(content, "yaml")
+        # Malformed YAML should fall back to the original string, not raise.
+        assert result == content
+
+
+# ---------------------------------------------------------------------------
+# parse_file_content — TOML
+# ---------------------------------------------------------------------------
+
+
+class TestParseToml:
+    def test_basic(self):
+        content = '[server]\nhost = "localhost"\nport = 8080'
+        result = parse_file_content(content, "toml")
+        assert result == {"server": {"host": "localhost", "port": 8080}}
+
+    def test_flat(self):
+        content = 'name = "test"\ncount = 42'
+        result = parse_file_content(content, "toml")
+        assert result == {"name": "test", "count": 42}
+
+    def test_empty_string_returns_empty_dict(self):
+        result = parse_file_content("", "toml")
+        assert result == {}
+
+    def test_invalid_toml_fallback(self):
+        result = parse_file_content("not = [valid toml", "toml")
+        assert result == "not = [valid toml"
+
+
+# ---------------------------------------------------------------------------
+# parse_file_content — Parquet (binary)
+# ---------------------------------------------------------------------------
+
+
+try:
+    import pyarrow as _pa  # noqa: F401  # pyright: ignore[reportMissingImports]
+
+    _has_pyarrow = True
+except ImportError:
+    _has_pyarrow = False
+
+
+@pytest.mark.skipif(not _has_pyarrow, reason="pyarrow not installed")
+class TestParseParquet:
+    @pytest.fixture
+    def parquet_bytes(self) -> bytes:
+        import pandas as pd
+
+        df = pd.DataFrame({"Name": ["Alice", "Bob"], "Score": [90, 85]})
+        buf = io.BytesIO()
+        df.to_parquet(buf, index=False)
+        return buf.getvalue()
+
+    def test_basic(self, parquet_bytes: bytes):
+        result = parse_file_content(parquet_bytes, "parquet")
+        assert result == [["Name", "Score"], ["Alice", 90], ["Bob", 85]]
+
+    def test_string_input_fallback(self):
+        # Parquet is binary — string input can't be parsed.
+        result = parse_file_content("not parquet", "parquet")
+        assert result == "not parquet"
+
+    def test_invalid_bytes_fallback(self):
+        result = parse_file_content(b"not parquet bytes", "parquet")
+        assert result == b"not parquet bytes"
+
+    def test_empty_bytes_fallback(self):
+        """Empty binary input should return the empty bytes, not crash."""
+        result = parse_file_content(b"", "parquet")
+        assert result == b""
+
+    def test_nan_replaced_with_none(self):
+        """NaN values in Parquet must become None for JSON serializability."""
+        import math
+
+        import pandas as pd
+
+        df = pd.DataFrame({"A": [1.0, float("nan"), 3.0], "B": ["x", None, "z"]})
+        buf = io.BytesIO()
+        df.to_parquet(buf, index=False)
+        result = parse_file_content(buf.getvalue(), "parquet")
+        # Row with NaN in float col → None
+        assert result[2][0] is None  # float NaN → None
+        assert result[2][1] is None  # str None → None
+        # Ensure no NaN leaks
+        for row in result[1:]:
+            for cell in row:
+                if isinstance(cell, float):
+                    assert not math.isnan(cell), f"NaN leaked: {row}"
+
+
+# ---------------------------------------------------------------------------
+# parse_file_content — Excel (binary)
+# ---------------------------------------------------------------------------
+
+
+class TestParseExcel:
+    @pytest.fixture
+    def xlsx_bytes(self) -> bytes:
+        import pandas as pd
+
+        df = pd.DataFrame({"Name": ["Alice", "Bob"], "Score": [90, 85]})
+        buf = io.BytesIO()
+        df.to_excel(buf, index=False)  # type: ignore[arg-type]  # BytesIO is a valid target
+        return buf.getvalue()
+
+    def test_basic(self, xlsx_bytes: bytes):
+        result = parse_file_content(xlsx_bytes, "xlsx")
+        assert result == [["Name", "Score"], ["Alice", 90], ["Bob", 85]]
+
+    def test_string_input_fallback(self):
+        result = parse_file_content("not xlsx", "xlsx")
+        assert result == "not xlsx"
+
+    def test_invalid_bytes_fallback(self):
+        result = parse_file_content(b"not xlsx bytes", "xlsx")
+        assert result == b"not xlsx bytes"
+
+    def test_empty_bytes_fallback(self):
+        """Empty binary input should return the empty bytes, not crash."""
+        result = parse_file_content(b"", "xlsx")
+        assert result == b""
+
+    def test_nan_replaced_with_none(self):
+        """NaN values in float columns must become None for JSON serializability."""
+        import math
+
+        import pandas as pd
+
+        df = pd.DataFrame({"A": [1.0, float("nan"), 3.0], "B": ["x", "y", None]})
+        buf = io.BytesIO()
+        df.to_excel(buf, index=False)  # type: ignore[arg-type]
+        result = parse_file_content(buf.getvalue(), "xlsx")
+        # Row with NaN in float col → None, not float('nan')
+        assert result[2][0] is None  # float NaN → None
+        assert result[3][1] is None  # str None → None
+        # Ensure no NaN leaks
+        for row in result[1:]:  # skip header
+            for cell in row:
+                if isinstance(cell, float):
+                    assert not math.isnan(cell), f"NaN leaked: {row}"
+
+
+# ---------------------------------------------------------------------------
+# parse_file_content — unknown format / fallback
+# ---------------------------------------------------------------------------
+
+
+class TestFallback:
+    def test_unknown_format_returns_content(self):
+        result = parse_file_content("hello world", "xml")
+        assert result == "hello world"
+
+    def test_none_format_returns_content(self):
+        # Shouldn't normally be called with unrecognised format, but must not crash.
+        result = parse_file_content("hello", "unknown_format")
+        assert result == "hello"
+
+
+# ---------------------------------------------------------------------------
+# BINARY_FORMATS
+# ---------------------------------------------------------------------------
+
+
+class TestBinaryFormats:
+    def test_parquet_is_binary(self):
+        assert "parquet" in BINARY_FORMATS
+
+    def test_xlsx_is_binary(self):
+        assert "xlsx" in BINARY_FORMATS
+
+    def test_text_formats_not_binary(self):
+        for fmt in ("json", "jsonl", "csv", "tsv", "yaml", "toml"):
+            assert fmt not in BINARY_FORMATS
+
+
+# ---------------------------------------------------------------------------
+# MIME mapping
+# ---------------------------------------------------------------------------
+
+
+class TestMimeMapping:
+    def test_application_yaml(self):
+        assert infer_format_from_uri("workspace://abc123#application/yaml") == "yaml"
+
+
+# ---------------------------------------------------------------------------
+# CSV sniffer fallback
+# ---------------------------------------------------------------------------
+
+
+class TestCsvSnifferFallback:
+    def test_tab_delimited_with_csv_format(self):
+        """Tab-delimited content parsed as csv should use sniffer fallback."""
+        content = "Name\tScore\nAlice\t90\nBob\t85"
+        result = parse_file_content(content, "csv")
+        assert result == [["Name", "Score"], ["Alice", "90"], ["Bob", "85"]]
+
+    def test_sniffer_failure_returns_content(self):
+        """When sniffer fails, single-column falls back to raw content."""
+        content = "Name\nAlice\nBob"
+        result = parse_file_content(content, "csv")
+        assert result == content
+
+
+# ---------------------------------------------------------------------------
+# OpenpyxlInvalidFile fallback
+# ---------------------------------------------------------------------------
+
+
+class TestOpenpyxlFallback:
+    def test_invalid_xlsx_non_strict(self):
+        """Invalid xlsx bytes should fall back gracefully in non-strict mode."""
+        result = parse_file_content(b"not xlsx bytes", "xlsx")
+        assert result == b"not xlsx bytes"
+
+
+# ---------------------------------------------------------------------------
+# Header-only CSV
+# ---------------------------------------------------------------------------
+
+
+class TestHeaderOnlyCsv:
+    def test_header_only_csv_returns_header_row(self):
+        """CSV with only a header row (no data rows) should return [[header]]."""
+        content = "Name,Score"
+        result = parse_file_content(content, "csv")
+        assert result == [["Name", "Score"]]
+
+    def test_header_only_csv_with_trailing_newline(self):
+        content = "Name,Score\n"
+        result = parse_file_content(content, "csv")
+        assert result == [["Name", "Score"]]
+
+
+# ---------------------------------------------------------------------------
+# Binary format + line range (line range ignored for binary formats)
+# ---------------------------------------------------------------------------
+
+
+@pytest.mark.skipif(not _has_pyarrow, reason="pyarrow not installed")
+class TestBinaryFormatLineRange:
+    def test_parquet_ignores_line_range(self):
+        """Binary formats should parse the full file regardless of line range.
+
+        Line ranges are meaningless for binary formats (parquet/xlsx) — the
+        caller (file_ref._expand_bare_ref) passes raw bytes and the parser
+        should return the complete structured data.
+        """
+        import pandas as pd
+
+        df = pd.DataFrame({"A": [1, 2, 3], "B": [4, 5, 6]})
+        buf = io.BytesIO()
+        df.to_parquet(buf, index=False)
+        # parse_file_content itself doesn't take a line range — this tests
+        # that the full content is parsed even though the bytes could have
+        # been truncated upstream (it's not, by design).
+        result = parse_file_content(buf.getvalue(), "parquet")
+        assert result == [["A", "B"], [1, 4], [2, 5], [3, 6]]
+
+
+# ---------------------------------------------------------------------------
+# Legacy .xls UX
+# ---------------------------------------------------------------------------
+
+
+class TestXlsFallback:
+    def test_xls_returns_helpful_error_string(self):
+        """Uploading a .xls file should produce a helpful error, not garbled binary."""
+        result = parse_file_content(b"\xd0\xcf\x11\xe0garbled", "xls")
+        assert isinstance(result, str)
+        assert ".xlsx" in result
+        assert "not supported" in result.lower()
+
+    def test_xls_with_string_content(self):
+        result = parse_file_content("some text", "xls")
+        assert isinstance(result, str)
+        assert ".xlsx" in result

autogpt_platform/backend/backend/util/file_test.py

@@ -8,7 +8,12 @@ from unittest.mock import AsyncMock, MagicMock, patch
 import pytest
 
 from backend.data.execution import ExecutionContext
-from backend.util.file import store_media_file
+from backend.util.file import (
+    is_media_file_ref,
+    parse_data_uri,
+    resolve_media_content,
+    store_media_file,
+)
 from backend.util.type import MediaFileType
 
 
@@ -344,3 +349,162 @@ class TestFileCloudIntegration:
                     execution_context=make_test_context(graph_exec_id=graph_exec_id),
                     return_format="for_local_processing",
                 )
+
+
+# ---------------------------------------------------------------------------
+# is_media_file_ref
+# ---------------------------------------------------------------------------
+
+
+class TestIsMediaFileRef:
+    def test_data_uri(self):
+        assert is_media_file_ref("data:image/png;base64,iVBORw0KGg==") is True
+
+    def test_workspace_uri(self):
+        assert is_media_file_ref("workspace://abc123") is True
+
+    def test_workspace_uri_with_mime(self):
+        assert is_media_file_ref("workspace://abc123#image/png") is True
+
+    def test_http_url(self):
+        assert is_media_file_ref("http://example.com/image.png") is True
+
+    def test_https_url(self):
+        assert is_media_file_ref("https://example.com/image.png") is True
+
+    def test_plain_text(self):
+        assert is_media_file_ref("print('hello')") is False
+
+    def test_local_path(self):
+        assert is_media_file_ref("/tmp/file.txt") is False
+
+    def test_empty_string(self):
+        assert is_media_file_ref("") is False
+
+    def test_filename(self):
+        assert is_media_file_ref("image.png") is False
+
+
+# ---------------------------------------------------------------------------
+# parse_data_uri
+# ---------------------------------------------------------------------------
+
+
+class TestParseDataUri:
+    def test_valid_png(self):
+        result = parse_data_uri("data:image/png;base64,iVBORw0KGg==")
+        assert result is not None
+        mime, payload = result
+        assert mime == "image/png"
+        assert payload == "iVBORw0KGg=="
+
+    def test_valid_text(self):
+        result = parse_data_uri("data:text/plain;base64,SGVsbG8=")
+        assert result is not None
+        assert result[0] == "text/plain"
+        assert result[1] == "SGVsbG8="
+
+    def test_mime_case_normalized(self):
+        result = parse_data_uri("data:IMAGE/PNG;base64,abc")
+        assert result is not None
+        assert result[0] == "image/png"
+
+    def test_not_data_uri(self):
+        assert parse_data_uri("workspace://abc123") is None
+
+    def test_plain_text(self):
+        assert parse_data_uri("hello world") is None
+
+    def test_missing_base64(self):
+        assert parse_data_uri("data:image/png;utf-8,abc") is None
+
+    def test_empty_payload(self):
+        result = parse_data_uri("data:image/png;base64,")
+        assert result is not None
+        assert result[1] == ""
+
+
+# ---------------------------------------------------------------------------
+# resolve_media_content
+# ---------------------------------------------------------------------------
+
+
+class TestResolveMediaContent:
+    @pytest.mark.asyncio
+    async def test_plain_text_passthrough(self):
+        """Plain text content (not a media ref) passes through unchanged."""
+        ctx = make_test_context()
+        result = await resolve_media_content(
+            MediaFileType("print('hello')"),
+            ctx,
+            return_format="for_external_api",
+        )
+        assert result == "print('hello')"
+
+    @pytest.mark.asyncio
+    async def test_empty_string_passthrough(self):
+        """Empty string passes through unchanged."""
+        ctx = make_test_context()
+        result = await resolve_media_content(
+            MediaFileType(""),
+            ctx,
+            return_format="for_external_api",
+        )
+        assert result == ""
+
+    @pytest.mark.asyncio
+    async def test_media_ref_delegates_to_store(self):
+        """Media references are resolved via store_media_file."""
+        ctx = make_test_context()
+        with patch(
+            "backend.util.file.store_media_file",
+            new=AsyncMock(return_value=MediaFileType("data:image/png;base64,abc")),
+        ) as mock_store:
+            result = await resolve_media_content(
+                MediaFileType("workspace://img123"),
+                ctx,
+                return_format="for_external_api",
+            )
+        assert result == "data:image/png;base64,abc"
+        mock_store.assert_called_once_with(
+            MediaFileType("workspace://img123"),
+            ctx,
+            return_format="for_external_api",
+        )
+
+    @pytest.mark.asyncio
+    async def test_data_uri_delegates_to_store(self):
+        """Data URIs are also resolved via store_media_file."""
+        ctx = make_test_context()
+        data_uri = "data:image/png;base64,iVBORw0KGg=="
+        with patch(
+            "backend.util.file.store_media_file",
+            new=AsyncMock(return_value=MediaFileType(data_uri)),
+        ) as mock_store:
+            result = await resolve_media_content(
+                MediaFileType(data_uri),
+                ctx,
+                return_format="for_external_api",
+            )
+        assert result == data_uri
+        mock_store.assert_called_once()
+
+    @pytest.mark.asyncio
+    async def test_https_url_delegates_to_store(self):
+        """HTTPS URLs are resolved via store_media_file."""
+        ctx = make_test_context()
+        with patch(
+            "backend.util.file.store_media_file",
+            new=AsyncMock(return_value=MediaFileType("data:image/png;base64,abc")),
+        ) as mock_store:
+            result = await resolve_media_content(
+                MediaFileType("https://example.com/image.png"),
+                ctx,
+                return_format="for_local_processing",
+            )
+        assert result == "data:image/png;base64,abc"
+        mock_store.assert_called_once_with(
+            MediaFileType("https://example.com/image.png"),
+            ctx,
+            return_format="for_local_processing",
+        )

autogpt_platform/backend/poetry.lock

@@ -1360,6 +1360,18 @@ files = [
 dnspython = ">=2.0.0"
 idna = ">=2.0.0"
 
+[[package]]
+name = "et-xmlfile"
+version = "2.0.0"
+description = "An implementation of lxml.xmlfile for the standard library"
+optional = false
+python-versions = ">=3.8"
+groups = ["main"]
+files = [
+    {file = "et_xmlfile-2.0.0-py3-none-any.whl", hash = "sha256:7a91720bc756843502c3b7504c77b8fe44217c85c537d85037f0f536151b2caa"},
+    {file = "et_xmlfile-2.0.0.tar.gz", hash = "sha256:dab3f4764309081ce75662649be815c4c9081e88f0837825f90fd28317d4da54"},
+]
+
 [[package]]
 name = "exa-py"
 version = "1.16.1"
@@ -4228,6 +4240,21 @@ datalib = ["numpy (>=1)", "pandas (>=1.2.3)", "pandas-stubs (>=1.1.0.11)"]
 realtime = ["websockets (>=13,<16)"]
 voice-helpers = ["numpy (>=2.0.2)", "sounddevice (>=0.5.1)"]
 
+[[package]]
+name = "openpyxl"
+version = "3.1.5"
+description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
+optional = false
+python-versions = ">=3.8"
+groups = ["main"]
+files = [
+    {file = "openpyxl-3.1.5-py2.py3-none-any.whl", hash = "sha256:5282c12b107bffeef825f4617dc029afaf41d0ea60823bbb665ef3079dc79de2"},
+    {file = "openpyxl-3.1.5.tar.gz", hash = "sha256:cf0e3cf56142039133628b5acffe8ef0c12bc902d2aadd3e0fe5878dc08d1050"},
+]
+
+[package.dependencies]
+et-xmlfile = "*"
+
 [[package]]
 name = "opentelemetry-api"
 version = "1.39.1"
@@ -5430,6 +5457,66 @@ files = [
     {file = "psycopg2_binary-2.9.11-cp39-cp39-win_amd64.whl", hash = "sha256:875039274f8a2361e5207857899706da840768e2a775bf8c65e82f60b197df02"},
 ]
 
+[[package]]
+name = "pyarrow"
+version = "23.0.1"
+description = "Python library for Apache Arrow"
+optional = false
+python-versions = ">=3.10"
+groups = ["main"]
+files = [
+    {file = "pyarrow-23.0.1-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:3fab8f82571844eb3c460f90a75583801d14ca0cc32b1acc8c361650e006fd56"},
+    {file = "pyarrow-23.0.1-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:3f91c038b95f71ddfc865f11d5876c42f343b4495535bd262c7b321b0b94507c"},
+    {file = "pyarrow-23.0.1-cp310-cp310-manylinux_2_28_aarch64.whl", hash = "sha256:d0744403adabef53c985a7f8a082b502a368510c40d184df349a0a8754533258"},
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+    {file = "pyarrow-23.0.1.tar.gz", hash = "sha256:b8c5873e33440b2bc2f4a79d2b47017a89c5a24116c055625e6f2ee50523f019"},
+]
+
 [[package]]
 name = "pyasn1"
 version = "0.6.2"
@@ -8882,4 +8969,4 @@ cffi = ["cffi (>=1.17,<2.0) ; platform_python_implementation != \"PyPy\" and pyt
 [metadata]
 lock-version = "2.1"
 python-versions = ">=3.10,<3.14"
-content-hash = "4e4365721cd3b68c58c237353b74adae1c64233fd4446904c335f23eb866fdca"
+content-hash = "86dab25684dd46e635a33bd33281a926e5626a874ecc048c34389fecf34a87d8"

autogpt_platform/backend/pyproject.toml

@@ -92,6 +92,8 @@ gravitas-md2gdocs = "^0.1.0"
 posthog = "^7.6.0"
 fpdf2 = "^2.8.6"
 langsmith = "^0.7.7"
+openpyxl = "^3.1.5"
+pyarrow = "^23.0.0"
 
 [tool.poetry.group.dev.dependencies]
 aiohappyeyeballs = "^2.6.1"

autogpt_platform/frontend/src/app/(platform)/copilot/components/ChatMessagesContainer/components/MessagePartRenderer.tsx

@@ -3,6 +3,7 @@ import { ErrorCard } from "@/components/molecules/ErrorCard/ErrorCard";
 import { ExclamationMarkIcon } from "@phosphor-icons/react";
 import { ToolUIPart, UIDataTypes, UIMessage, UITools } from "ai";
 import { useState } from "react";
+import { ConnectIntegrationTool } from "../../../tools/ConnectIntegrationTool/ConnectIntegrationTool";
 import { CreateAgentTool } from "../../../tools/CreateAgent/CreateAgent";
 import { EditAgentTool } from "../../../tools/EditAgent/EditAgent";
 import {
@@ -129,6 +130,8 @@ export function MessagePartRenderer({ part, messageID, partIndex }: Props) {
     case "tool-search_docs":
     case "tool-get_doc_page":
       return <SearchDocsTool key={key} part={part as ToolUIPart} />;
+    case "tool-connect_integration":
+      return <ConnectIntegrationTool key={key} part={part as ToolUIPart} />;
     case "tool-run_block":
     case "tool-continue_run_block":
       return <RunBlockTool key={key} part={part as ToolUIPart} />;

autogpt_platform/frontend/src/app/(platform)/copilot/tools/ConnectIntegrationTool/ConnectIntegrationTool.tsx

@@ -0,0 +1,104 @@
+"use client";
+
+import type { SetupRequirementsResponse } from "@/app/api/__generated__/models/setupRequirementsResponse";
+import type { ToolUIPart } from "ai";
+import { useState } from "react";
+import { MorphingTextAnimation } from "../../components/MorphingTextAnimation/MorphingTextAnimation";
+import { ContentMessage } from "../../components/ToolAccordion/AccordionContent";
+import { SetupRequirementsCard } from "../RunBlock/components/SetupRequirementsCard/SetupRequirementsCard";
+
+type Props = {
+  part: ToolUIPart;
+};
+
+function parseJson(raw: unknown): unknown {
+  if (typeof raw === "string") {
+    try {
+      return JSON.parse(raw);
+    } catch {
+      return null;
+    }
+  }
+  return raw;
+}
+
+function parseOutput(raw: unknown): SetupRequirementsResponse | null {
+  const parsed = parseJson(raw);
+  if (parsed && typeof parsed === "object" && "setup_info" in parsed) {
+    return parsed as SetupRequirementsResponse;
+  }
+  return null;
+}
+
+function parseError(raw: unknown): string | null {
+  const parsed = parseJson(raw);
+  if (parsed && typeof parsed === "object" && "message" in parsed) {
+    return String((parsed as { message: unknown }).message);
+  }
+  return null;
+}
+
+export function ConnectIntegrationTool({ part }: Props) {
+  // Persist dismissed state here so SetupRequirementsCard remounts don't re-enable Proceed.
+  const [isDismissed, setIsDismissed] = useState(false);
+
+  const isStreaming =
+    part.state === "input-streaming" || part.state === "input-available";
+  const isError = part.state === "output-error";
+
+  const output =
+    part.state === "output-available"
+      ? parseOutput((part as { output?: unknown }).output)
+      : null;
+
+  const errorMessage = isError
+    ? (parseError((part as { output?: unknown }).output) ??
+      "Failed to connect integration")
+    : null;
+
+  const rawProvider =
+    (part as { input?: { provider?: string } }).input?.provider ?? "";
+  const providerName =
+    output?.setup_info?.agent_name ??
+    // Sanitize LLM-controlled provider slug: trim and cap at 64 chars to
+    // prevent runaway text in the DOM.
+    (rawProvider ? rawProvider.trim().slice(0, 64) : "integration");
+
+  const label = isStreaming
+    ? `Connecting ${providerName}…`
+    : isError
+      ? `Failed to connect ${providerName}`
+      : output
+        ? `Connect ${output.setup_info?.agent_name ?? providerName}`
+        : `Connect ${providerName}`;
+
+  return (
+    <div className="py-2">
+      <div className="flex items-center gap-2 text-sm text-muted-foreground">
+        <MorphingTextAnimation
+          text={label}
+          className={isError ? "text-red-500" : undefined}
+        />
+      </div>
+
+      {isError && errorMessage && (
+        <p className="mt-1 text-sm text-red-500">{errorMessage}</p>
+      )}
+
+      {output && (
+        <div className="mt-2">
+          {isDismissed ? (
+            <ContentMessage>Connected. Continuing…</ContentMessage>
+          ) : (
+            <SetupRequirementsCard
+              output={output}
+              credentialsLabel={`${output.setup_info?.agent_name ?? providerName} credentials`}
+              retryInstruction="I've connected my account. Please continue."
+              onComplete={() => setIsDismissed(true)}
+            />
+          )}
+        </div>
+      )}
+    </div>
+  );
+}

autogpt_platform/frontend/src/app/(platform)/copilot/tools/RunBlock/components/SetupRequirementsCard/SetupRequirementsCard.tsx

@@ -23,12 +23,16 @@ interface Props {
   /** Override the label shown above the credentials section.
    * Defaults to "Credentials". */
   credentialsLabel?: string;
+  /** Called after Proceed is clicked so the parent can persist the dismissed state
+   * across remounts (avoids re-enabling the Proceed button on remount). */
+  onComplete?: () => void;
 }
 
 export function SetupRequirementsCard({
   output,
   retryInstruction,
   credentialsLabel,
+  onComplete,
 }: Props) {
   const { onSend } = useCopilotChatActions();
 
@@ -68,13 +72,17 @@ export function SetupRequirementsCard({
       return v !== undefined && v !== null && v !== "";
     });
 
+  if (hasSent) {
+    return <ContentMessage>Connected. Continuing…</ContentMessage>;
+  }
+
   const canRun =
-    !hasSent &&
     (!needsCredentials || isAllCredentialsComplete) &&
     (!needsInputs || isAllInputsComplete);
 
   function handleRun() {
     setHasSent(true);
+    onComplete?.();
 
     const parts: string[] = [];
     if (needsCredentials) {

autogpt_platform/frontend/src/app/(platform)/library/components/JumpBackIn/JumpBackIn.tsx

@@ -0,0 +1,40 @@
+"use client";
+
+import { ArrowRight, Lightning } from "@phosphor-icons/react";
+import NextLink from "next/link";
+
+import { Button } from "@/components/atoms/Button/Button";
+import { Text } from "@/components/atoms/Text/Text";
+import { useJumpBackIn } from "./useJumpBackIn";
+
+export function JumpBackIn() {
+  const { agent, isLoading } = useJumpBackIn();
+
+  if (isLoading || !agent) {
+    return null;
+  }
+
+  return (
+    <div className="flex items-center justify-between rounded-large border border-zinc-200 bg-gradient-to-r from-zinc-50 to-white px-5 py-4">
+      <div className="flex items-center gap-3">
+        <div className="flex h-9 w-9 items-center justify-center rounded-full bg-zinc-900">
+          <Lightning size={18} weight="fill" className="text-white" />
+        </div>
+        <div className="flex flex-col">
+          <Text variant="small" className="text-zinc-500">
+            Continue where you left off
+          </Text>
+          <Text variant="body-medium" className="text-zinc-900">
+            {agent.name}
+          </Text>
+        </div>
+      </div>
+      <NextLink href={`/library/agents/${agent.id}`}>
+        <Button variant="primary" size="small" className="gap-1.5">
+          Jump Back In
+          <ArrowRight size={16} />
+        </Button>
+      </NextLink>
+    </div>
+  );
+}

autogpt_platform/frontend/src/app/(platform)/library/components/JumpBackIn/useJumpBackIn.ts

@@ -0,0 +1,28 @@
+"use client";
+
+import { useGetV2ListLibraryAgents } from "@/app/api/__generated__/endpoints/library/library";
+import { okData } from "@/app/api/helpers";
+
+export function useJumpBackIn() {
+  const { data, isLoading } = useGetV2ListLibraryAgents(
+    {
+      page: 1,
+      page_size: 1,
+      sort_by: "updatedAt",
+    },
+    {
+      query: { select: okData },
+    },
+  );
+
+  // The API doesn't include execution data by default (include_executions is
+  // internal to the backend), so recent_executions is always empty here.
+  // We use the most recently updated agent as the "jump back in" candidate
+  // instead — updatedAt is the best available proxy for recent activity.
+  const agent = data?.agents[0] ?? null;
+
+  return {
+    agent,
+    isLoading,
+  };
+}

autogpt_platform/frontend/src/app/(platform)/library/page.tsx

@@ -2,6 +2,7 @@
 
 import { useEffect, useState, useCallback } from "react";
 import { HeartIcon, ListIcon } from "@phosphor-icons/react";
+import { JumpBackIn } from "./components/JumpBackIn/JumpBackIn";
 import { LibraryActionHeader } from "./components/LibraryActionHeader/LibraryActionHeader";
 import { LibraryAgentList } from "./components/LibraryAgentList/LibraryAgentList";
 import { Tab } from "./components/LibraryTabs/LibraryTabs";
@@ -38,6 +39,7 @@ export default function LibraryPage() {
       onAnimationComplete={handleFavoriteAnimationComplete}
     >
       <main className="pt-160 container min-h-screen space-y-4 pb-20 pt-16 sm:px-8 md:px-12">
+        <JumpBackIn />
         <LibraryActionHeader setSearchTerm={setSearchTerm} />
         <LibraryAgentList
           searchTerm={searchTerm}

autogpt_platform/frontend/src/components/contextual/CredentialsInput/useCredentialsInput.ts

@@ -125,9 +125,9 @@ export function useCredentialsInput({
       if (hasAttemptedAutoSelect.current) return;
       hasAttemptedAutoSelect.current = true;
 
-      // Auto-select if exactly one credential matches.
-      // For optional fields with multiple options, let the user choose.
-      if (isOptional && savedCreds.length > 1) return;
+      // Auto-select only when there is exactly one saved credential.
+      // With multiple options the user must choose — regardless of optional/required.
+      if (savedCreds.length > 1) return;
 
       const cred = savedCreds[0];
       onSelectCredential({