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Changes subProperty axioms, deleted RO import, fixed bogus domain/range for occurs-at/is-site-of

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Mark Jensen
2023-09-17 12:37:02 -04:00
parent 57dbd99098
commit 77a709ea49
1 changed files with 71 additions and 68 deletions
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ExtendedRelationOntology.ttl
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@@ -5,16 +5,15 @@
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology> .
<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology> rdf:type owl:Ontology ;
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2023-04-07/ExtendedRelationOntology> ;
owl:imports <http://www.ontologyrepository.com/CommonCoreOntologies/Upper/ROImport> ,
obo:bfo ;
<http://purl.org/dc/terms/license> <https://opensource.org/licenses/BSD-3-Clause> ;
owl:imports obo:bfo ;
dcterms:license <https://opensource.org/licenses/BSD-3-Clause> ;
rdfs:comment "This ontology is designed to represent many of the relations (i.e. object properties) that hold between entities at the level of the mid-level Common Core Ontologies."@en ;
rdfs:label "Extended Relation Ontology"@en ;
owl:versionInfo "Version 1.4"@en .
@@ -23,6 +22,18 @@
# Annotation properties
#################################################################
### http://purl.org/dc/terms/created
dcterms:created rdf:type owl:AnnotationProperty .
### http://purl.org/dc/terms/creator
dcterms:creator rdf:type owl:AnnotationProperty .
### http://purl.org/dc/terms/license
dcterms:license rdf:type owl:AnnotationProperty .
### http://www.ontologyrepository.com/CommonCoreOntologies/acronym
cco:acronym rdf:type owl:AnnotationProperty ;
cco:definition "An Alternative Label that consists of a shortened or abbreviated form of the rdfs:label and is used to denote the entity."@en ;
@@ -44,32 +55,6 @@ cco:code_license rdf:type owl:AnnotationProperty ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:anyURI ;
rdfs:label "code license"@en .
### http://www.ontologyrepository.com/CommonCoreOntologies/is_disrupted_by
cco:is_disrupted_by rdf:type owl:ObjectProperty ;
dcterms:created "2022-12-30T21:32:27-05:00"^^xsd:dateTime ;
owl:inverseOf cco:disrupts ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000015 ;
cco:definition "Inverse of disrupts." ;
dcterms:creator "https://cubrc.org"^^xsd:anyURI ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:anyURI ;
rdfs:label "is disrupted by"@en ;
skos:prefLabel "is disrupted by"@en .
### http://www.ontologyrepository.com/CommonCoreOntologies/disrupts
cco:disrupts rdf:type owl:ObjectProperty ;
owl:inverseOf cco:is_disrupted_by ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000015 ;
dcterms:created "2022-12-30T21:32:27-05:00"^^xsd:dateTime ;
dcterms:creator "https://cubrc.org"^^xsd:anyURI ;
cco:definition "A relation where one process disrupts another process from occurring as it would have."@en ;
cco:elucidation "A process can disrupt another process from occurring as it would have by 1) preventing a disposition or role from being realized by that process, 2) lowering the grade of the process, or 3) stopping the process from continuing to occur."@en ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AgentOntology"^^xsd:anyURI ;
rdfs:label "disrupts"@en ;
skos:editorialNote "To lower the grade of a process is to lower the quality of a process according to some standard, for example when realizing a capability or a function."@en ;
skos:prefLabel "disrupts"@en .
### http://www.ontologyrepository.com/CommonCoreOntologies/content_license
cco:content_license rdf:type owl:AnnotationProperty ;
@@ -243,13 +228,17 @@ cco:term_editor rdf:type owl:AnnotationProperty ;
rdfs:label "term editor"@en .
### http://www.w3.org/2004/02/skos/core#editorialNote
skos:editorialNote rdf:type owl:AnnotationProperty .
#################################################################
# Object Properties
#################################################################
### http://www.ontologyrepository.com/CommonCoreOntologies/accessory_in
cco:accessory_in rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000056 ;
rdfs:subPropertyOf obo:BFO_0000056 ;
owl:inverseOf cco:has_accessory ;
rdfs:domain obo:BFO_0000040 ;
rdfs:range obo:BFO_0000015 ;
@@ -261,7 +250,7 @@ cco:accessory_in rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/accomplice_in
cco:accomplice_in rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000056 ;
rdfs:subPropertyOf obo:BFO_0000056 ;
owl:inverseOf cco:has_accomplice ;
rdfs:domain obo:BFO_0000040 ;
rdfs:range obo:BFO_0000015 ;
@@ -273,7 +262,7 @@ cco:accomplice_in rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/affects
cco:affects rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000057 ;
rdfs:subPropertyOf obo:BFO_0000057 ;
owl:inverseOf cco:is_affected_by ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000002 ;
@@ -347,9 +336,24 @@ cco:disposition_of_aggregate rdf:type owl:ObjectProperty ;
rdfs:label "disposition of aggregate"@en .
### http://www.ontologyrepository.com/CommonCoreOntologies/disrupts
cco:disrupts rdf:type owl:ObjectProperty ;
owl:inverseOf cco:is_disrupted_by ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000015 ;
dcterms:created "2022-12-30T21:32:27-05:00"^^xsd:dateTime ;
dcterms:creator "https://cubrc.org"^^xsd:anyURI ;
cco:definition "A relation where one process disrupts another process from occurring as it would have."@en ;
cco:elucidation "A process can disrupt another process from occurring as it would have by 1) preventing a disposition or role from being realized by that process, 2) lowering the grade of the process, or 3) stopping the process from continuing to occur."@en ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AgentOntology"^^xsd:anyURI ;
rdfs:label "disrupts"@en ;
skos:editorialNote "To lower the grade of a process is to lower the quality of a process according to some standard, for example when realizing a capability or a function."@en ;
skos:prefLabel "disrupts"@en .
### http://www.ontologyrepository.com/CommonCoreOntologies/has_accessory
cco:has_accessory rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000057 ;
rdfs:subPropertyOf obo:BFO_0000057 ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000040 ;
cco:definition "x has_accessory y iff x is an instance of Process and y is an instance of Agent, such that y assists another agent in the commission of x, and y was not located at the location of x when x occurred, and y was not an agent_in x."@en ;
@@ -360,7 +364,7 @@ cco:has_accessory rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/has_accomplice
cco:has_accomplice rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000057 ;
rdfs:subPropertyOf obo:BFO_0000057 ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000040 ;
cco:definition "A Processual Entity p1 has_accomplice some agent a1 iff a1 assists in the commission of p1, is located at the location of p1, but is not agent_in p1."@en ;
@@ -371,7 +375,7 @@ cco:has_accomplice rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/has_input
cco:has_input rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000057 ;
rdfs:subPropertyOf obo:BFO_0000057 ;
owl:inverseOf cco:is_input_of ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000002 ;
@@ -391,7 +395,7 @@ cco:has_member_of_located_in rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/has_object
cco:has_object rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000057 ;
rdfs:subPropertyOf obo:BFO_0000057 ;
owl:inverseOf cco:is_object_of ;
cco:definition "If p is a process and c is a continuant, then p has object c if and only if the c is part of the projected state that the agent intends to achieve by performing p."@en ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:anyURI ;
@@ -400,7 +404,7 @@ cco:has_object rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/has_output
cco:has_output rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000057 ;
rdfs:subPropertyOf obo:BFO_0000057 ;
owl:inverseOf cco:is_output_of ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000002 ;
@@ -412,7 +416,7 @@ cco:has_output rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/has_process_part
cco:has_process_part rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:BFO_0000051 ;
rdfs:subPropertyOf obo:BFO_0000117 ;
owl:inverseOf cco:is_part_of_process ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000015 ;
@@ -436,7 +440,7 @@ cco:inheres_in_aggregate rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/is_affected_by
cco:is_affected_by rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000056 ;
rdfs:subPropertyOf obo:BFO_0000056 ;
rdfs:domain obo:BFO_0000002 ;
rdfs:range obo:BFO_0000015 ;
cco:definition "c is_affected_by p iff p is an instance of a Process and c is an instance of a Continuant, such that p influences c in some manner, most often by producing a change in c."@en ;
@@ -453,9 +457,21 @@ cco:is_cause_of rdf:type owl:ObjectProperty ;
rdfs:label "is cause of"@en .
### http://www.ontologyrepository.com/CommonCoreOntologies/is_disrupted_by
cco:is_disrupted_by rdf:type owl:ObjectProperty ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000015 ;
dcterms:created "2022-12-30T21:32:27-05:00"^^xsd:dateTime ;
dcterms:creator "https://cubrc.org"^^xsd:anyURI ;
cco:definition "Inverse of disrupts." ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:anyURI ;
rdfs:label "is disrupted by"@en ;
skos:prefLabel "is disrupted by"@en .
### http://www.ontologyrepository.com/CommonCoreOntologies/is_input_of
cco:is_input_of rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000056 ;
rdfs:subPropertyOf obo:BFO_0000056 ;
rdfs:domain obo:BFO_0000002 ;
rdfs:range obo:BFO_0000015 ;
cco:definition "x is_input_of y iff x is an instance of Continuant and y is an instance of Process, such that the presence of x at the beginning of y is a necessary condition for the start of y."@en ;
@@ -485,7 +501,7 @@ cco:is_material_of rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/is_object_of
cco:is_object_of rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000056 ;
rdfs:subPropertyOf obo:BFO_0000056 ;
cco:definition "If p is a process and c is a continuant, then c is object of p if and only if the c is part of the projected state that the agent intends to achieve by performing p."@en ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:anyURI ;
rdfs:label "is object of"@en .
@@ -493,7 +509,7 @@ cco:is_object_of rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/is_output_of
cco:is_output_of rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000056 ;
rdfs:subPropertyOf obo:BFO_0000056 ;
rdfs:domain obo:BFO_0000002 ;
rdfs:range obo:BFO_0000015 ;
cco:definition "x is_output_of y iff x is an instance of Continuant and y is an instance of Process, such that the presence of x at the end of y is a necessary condition for the completion of y."@en ;
@@ -503,7 +519,7 @@ cco:is_output_of rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/is_part_of_process
cco:is_part_of_process rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:BFO_0000050 ;
rdfs:subPropertyOf obo:BFO_0000132 ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000015 ;
cco:definition "x is_part_of_process y iff x and y are instances of Process, such that x occurs during the temporal interval of y, and x either provides an input to y or receives an output of y."@en ;
@@ -524,13 +540,9 @@ cco:is_predecessor_of rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/is_site_of
cco:is_site_of rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:BFO_0000067 ;
rdfs:subPropertyOf obo:BFO_0000183 ;
owl:inverseOf cco:occurs_at ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( obo:BFO_0000006
obo:BFO_0000029
)
] ;
rdfs:domain obo:BFO_0000029 ;
rdfs:range obo:BFO_0000015 ;
cco:definition "x is_site_of y iff x is an instance of Site and y is an instance of Process, such that y occurs in x."@en ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:anyURI ;
@@ -548,37 +560,28 @@ cco:is_successor_of rdf:type owl:ObjectProperty ;
### http://www.ontologyrepository.com/CommonCoreOntologies/is_temporal_region_of
cco:is_temporal_region_of rdf:type owl:ObjectProperty ;
owl:inverseOf cco:occurs_on ;
rdfs:domain obo:BFO_0000008 ;
rdfs:range obo:BFO_0000015 ;
rdfs:range [ rdf:type owl:Class ;
owl:unionOf ( obo:BFO_0000015
obo:BFO_0000035
)
] ;
cco:definition "x is_temporal_region_of y iff y is an instance of a process or process boundary and x is an instance of a temporal region, such that the duration of x temporally projects on y."@en ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:anyURI ;
rdfs:label "is temporal region of"@en .
rdfs:label "is temporal region of"@en ;
skos:editorialNote "Leaving this is in for now since BFO2020 has no inverse yet."@en .
### http://www.ontologyrepository.com/CommonCoreOntologies/occurs_at
cco:occurs_at rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:BFO_0000066 ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range [ rdf:type owl:Class ;
owl:unionOf ( obo:BFO_0000006
obo:BFO_0000029
)
] ;
rdfs:range obo:BFO_0000029 ;
cco:definition "x occurs_at y iff x is an instance of Process and y is an instance of Site, such that x occurs in y."@en ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:anyURI ;
rdfs:label "occurs at"@en .
### http://www.ontologyrepository.com/CommonCoreOntologies/occurs_on
cco:occurs_on rdf:type owl:ObjectProperty ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000008 ;
cco:definition "x occurs_on y iff x is an instance of a process or process boundary and y is an instance of a temporal region, such that the duration of x temporally projects on y."@en ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:anyURI ;
rdfs:label "occurs on"@en .
### http://www.ontologyrepository.com/CommonCoreOntologies/process_started_by
cco:process_started_by rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf cco:caused_by ;
@@ -618,4 +621,4 @@ cco:role_of_aggregate rdf:type owl:ObjectProperty ;
rdfs:label "role of aggregate"@en .
### Generated by the OWL API (version 4.2.8.20170104-2310) https://github.com/owlcs/owlapi
### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi