Replace deprecated PyPDF2 with pypdf (#12203)

Co-authored-by: openhands <openhands@all-hands.dev>

openhands/runtime/plugins/agent_skills/file_reader/file_readers.py

@@ -22,7 +22,7 @@ import base64
 from typing import Any
 
 import docx
-import PyPDF2
+import pypdf
 from pptx import Presentation
 from pylatexenc.latex2text import LatexNodes2Text
 
@@ -42,7 +42,7 @@ def parse_pdf(file_path: str) -> None:
         file_path: str: The path to the file to open.
     """
     print(f'[Reading PDF file from {file_path}]')
-    content = PyPDF2.PdfReader(file_path)
+    content = pypdf.PdfReader(file_path)
     text = ''
     for page_idx in range(len(content.pages)):
         text += (

poetry.lock

@@ -16824,4 +16824,4 @@ third-party-runtimes = ["daytona", "e2b-code-interpreter", "modal", "runloop-api
 [metadata]
 lock-version = "2.1"
 python-versions = "^3.12,<3.14"
-content-hash = "9360db8d9ee46922f780ac13e2954c0b62166efd9c3d1b3cf61a9228889152fa"
+content-hash = "ea3a3dcacf87517954778e7b04f0a5865bf213442a7bdbc4f2dc467713dbf82f"

pyproject.toml

@@ -77,7 +77,6 @@ shellingham = "^1.5.4"
 # TODO: Should these go into the runtime group?
 ipywidgets = "^8.1.5"
 qtconsole = "^5.6.1"
-PyPDF2 = "*"
 python-pptx = "*"
 pylatexenc = "*"
 python-docx = "*"