Update the API usages after merge

src/application-delegate.coffee

@@ -107,7 +107,7 @@ class ApplicationDelegate
     ipcRenderer.send("call-window-method", "setRepresentedFilename", filename)
 
   addRecentDocument: (filename) ->
-    ipc.send("add-recent-document", filename)
+    ipcRenderer.send("add-recent-document", filename)
 
   setRepresentedDirectoryPaths: (paths) ->
     loadSettings = getWindowLoadSettings()

src/browser/atom-application.coffee

@@ -273,10 +273,10 @@ class AtomApplication
     ipcMain.on 'write-to-stdout', (event, output) ->
       process.stdout.write(output)
 
-    ipcMain.on 'write-to-stderr', (event, output) ->
-      process.stderr.write(output)
+  ipcMain.on 'write-to-stderr', (event, output) ->
+    process.stderr.write(output)
 
-    ipc.on 'add-recent-document', (event, filename) ->
+  ipcMain.on 'add-recent-document', (event, filename) ->
       app.addRecentDocument(filename)
 
   setupDockMenu: ->

static/index.js

@@ -1,6 +1,4 @@
 (function () {
-  process.throwDeprecation = true;
-
   var path = require('path')
   var FileSystemBlobStore = require('../src/file-system-blob-store')
   var NativeCompileCache = require('../src/native-compile-cache')