Cheng Zhao e4400c648d Revert "Run apm from node_modules" ...

This reverts commit 8742f6c06c.

The `node_modules/.bin/apm` is a bash script not a js script, so on
Windows `node node_modules/.bin/apm` would fail with:

```
C:\cygwin\home\zcbenz\codes\atom\node_modules\.bin\apm:2
basedir=`dirname "$0"`
        ^
SyntaxError: Unexpected token ILLEGAL
    at Module._compile (module.js:439:25)
    at Object.Module._extensions..js (module.js:474:10)
    at Module.load (module.js:356:32)
    at Function.Module._load (module.js:312:12)
    at Function.Module.runMain (module.js:497:10)
    at startup (node.js:119:16)
    at node.js:901:3
```

2013-10-30 10:51:06 +08:00

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