v0.26.4

* Improved URI handling for virtual FS

* Ensure virtual filesystem is accepted as mdSelector

---------

Co-authored-by: Paul de Raaij <paul@paulderaaij.nl>

.all-contributorsrc

@@ -1058,6 +1058,60 @@
       "contributions": [
         "doc"
       ]
+    },
+    {
+      "login": "dcarosone",
+      "name": "Daniel Carosone",
+      "avatar_url": "https://avatars.githubusercontent.com/u/11495017?v=4",
+      "profile": "https://github.com/dcarosone",
+      "contributions": [
+        "doc"
+      ]
+    },
+    {
+      "login": "MABruni",
+      "name": "Miguel Angel Bruni Montero",
+      "avatar_url": "https://avatars.githubusercontent.com/u/100445384?v=4",
+      "profile": "https://github.com/MABruni",
+      "contributions": [
+        "code"
+      ]
+    },
+    {
+      "login": "Walshkev",
+      "name": "Kevin Walsh ",
+      "avatar_url": "https://avatars.githubusercontent.com/u/77123083?v=4",
+      "profile": "https://github.com/Walshkev",
+      "contributions": [
+        "doc"
+      ]
+    },
+    {
+      "login": "hereistheusername",
+      "name": "Xinglan Liu",
+      "avatar_url": "https://avatars.githubusercontent.com/u/33437051?v=4",
+      "profile": "http://hereistheusername.github.io/",
+      "contributions": [
+        "code"
+      ]
+    },
+    {
+      "login": "Hegghammer",
+      "name": "Thomas Hegghammer",
+      "avatar_url": "https://avatars.githubusercontent.com/u/64712218?v=4",
+      "profile": "http://www.hegghammer.com",
+      "contributions": [
+        "doc"
+      ]
+    },
+    {
+      "login": "PiotrAleksander",
+      "name": "Piotr Mrzygłosz",
+      "avatar_url": "https://avatars.githubusercontent.com/u/6314591?v=4",
+      "profile": "https://github.com/PiotrAleksander",
+      "contributions": [
+        "doc"
+      ]
     }
   ],
   "contributorsPerLine": 7,

.github/workflows/update-docs.yml

@@ -6,6 +6,8 @@ on:
       - master
     paths:
       - docs/user/**/*
+      - docs/.vscode/**/*
+      - docs/assets/**/*
   workflow_dispatch:
 
 jobs:
@@ -20,13 +22,15 @@ jobs:
       - uses: actions/checkout@v3
         with:
           path: foam
-      - name: Copy and fixup user docs files          
+      - name: Copy and fixup user docs files
         id: copy
         run: |
           rm -r foam-template/docs
           rm -r foam-template/assets
+          rm -r foam-template/.vscode
           cp -r foam/docs/user foam-template/docs
           cp -r foam/docs/assets foam-template/assets
+          cp -r foam/docs/.vscode foam-template/.vscode
 
           # Strip autogenerated wikileaks references because
           # they are not an appropriate default user experience.

.gitignore

@@ -1,6 +1,7 @@
 node_modules
 .DS_Store
 .vscode-test/
+.vscode-test-web/
 *.tsbuildinfo
 *.vsix
 *.log

docs/.vscode/extensions.json

@@ -5,17 +5,11 @@
     // Foam's own extension
     "foam.foam-vscode",
 
-    // Prettier for auto formatting code
-    "esbenp.prettier-vscode",
-
-    // GitLens for seeing version history inline
-    "eamodio.gitlens",
-
     // Tons of markdown goodies (lists, tables of content, so much more)
     "yzhang.markdown-all-in-one",
 
-    // Graph visualizer
-    "tchayen.markdown-links",
+    // Prettier for auto formatting code
+    "esbenp.prettier-vscode",
 
     // Understated grayscale theme (light and dark variants)
     "philipbe.theme-gray-matter"

docs/.vscode/foam.json

@@ -1,4 +0,0 @@
-{
-  "purpose": "this file exists to tell the foam-vscode plugin that it's currently in a foam workspace",
-  "future": "we may use this for custom configuration"
-}

docs/.vscode/keybindings.json

@@ -3,6 +3,6 @@
 [
   {
     "key": "cmd+shift+n",
-    "command": "vscodeMarkdownNotes.newNote"
+    "command": "foam-vscode.create-note"
   }
 ]

docs/.vscode/settings.json

@@ -5,7 +5,6 @@
   "editor.overviewRulerBorder": false,
   "editor.lineHeight": 24,
   "foam.edit.linkReferenceDefinitions": "withExtensions",
-  "vscodeMarkdownNotes.noteCompletionConvention": "noExtension",
   "[markdown]": {
     "editor.quickSuggestions": {
       "other": true,
@@ -13,21 +12,11 @@
       "strings": false
     }
   },
-  "cSpell.language": "en-GB",
   "git.enableSmartCommit": true,
   "git.postCommitCommand": "sync",
-  "spellright.language": [
-    "en"
-  ],
-  "spellright.documentTypes": [
-    "markdown",
-    "plaintext"
-  ],
   "files.exclude": {
     "_site/**": true
   },
   "files.insertFinalNewline": true,
-  "markdown.styles": [
-    ".vscode/custom-tag-style.css"
-  ]
+  "markdown.styles": [".vscode/custom-tag-style.css"]
 }

docs/.vscode/spellright.dict

@@ -1 +0,0 @@
-Backlinking

docs/dev/code-of-conduct.md

@@ -1,3 +1,8 @@
+---
+redirect_from:
+  - /code-of-conduct
+---
+
 # Code of Conduct
 
 We follow the [Contributor Covenant](https://www.contributor-covenant.org/) code of conduct.

docs/index.md

@@ -255,6 +255,14 @@ If that sounds like something you're interested in, I'd love to have you along o
       <td align="center" valign="top" width="14.28%"><a href="https://amnesiak.org/me"><img src="https://avatars.githubusercontent.com/u/952059?v=4?s=60" width="60px;" alt="Tony Cheneau"/><br /><sub><b>Tony Cheneau</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=tcheneau" title="Documentation">📖</a></td>
       <td align="center" valign="top" width="14.28%"><a href="https://github.com/nicholas-l"><img src="https://avatars.githubusercontent.com/u/12977174?v=4?s=60" width="60px;" alt="Nicholas Latham"/><br /><sub><b>Nicholas Latham</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=nicholas-l" title="Code">💻</a></td>
       <td align="center" valign="top" width="14.28%"><a href="https://thara.dev"><img src="https://avatars.githubusercontent.com/u/1532891?v=4?s=60" width="60px;" alt="Tomochika Hara"/><br /><sub><b>Tomochika Hara</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=thara" title="Documentation">📖</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="https://github.com/dcarosone"><img src="https://avatars.githubusercontent.com/u/11495017?v=4?s=60" width="60px;" alt="Daniel Carosone"/><br /><sub><b>Daniel Carosone</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=dcarosone" title="Documentation">📖</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="https://github.com/MABruni"><img src="https://avatars.githubusercontent.com/u/100445384?v=4?s=60" width="60px;" alt="Miguel Angel Bruni Montero"/><br /><sub><b>Miguel Angel Bruni Montero</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=MABruni" title="Code">💻</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="https://github.com/Walshkev"><img src="https://avatars.githubusercontent.com/u/77123083?v=4?s=60" width="60px;" alt="Kevin Walsh "/><br /><sub><b>Kevin Walsh </b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=Walshkev" title="Documentation">📖</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="http://hereistheusername.github.io/"><img src="https://avatars.githubusercontent.com/u/33437051?v=4?s=60" width="60px;" alt="Xinglan Liu"/><br /><sub><b>Xinglan Liu</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=hereistheusername" title="Code">💻</a></td>
+    </tr>
+    <tr>
+      <td align="center" valign="top" width="14.28%"><a href="http://www.hegghammer.com"><img src="https://avatars.githubusercontent.com/u/64712218?v=4?s=60" width="60px;" alt="Thomas Hegghammer"/><br /><sub><b>Thomas Hegghammer</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=Hegghammer" title="Documentation">📖</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="https://github.com/PiotrAleksander"><img src="https://avatars.githubusercontent.com/u/6314591?v=4?s=60" width="60px;" alt="Piotr Mrzygłosz"/><br /><sub><b>Piotr Mrzygłosz</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=PiotrAleksander" title="Documentation">📖</a></td>
     </tr>
   </tbody>
 </table>

docs/user/features/commands.md

@@ -10,13 +10,13 @@ This command creates a note.
 Although it works fine on its own, it can be customized to achieve various use cases.
 Here are the settings available for the command:
 
-- notePath: The path of the note to create. If relative it will be resolved against the workspace root.
-- templatePath: The path of the template to use. If relative it will be resolved against the workspace root.
-- title: The title of the note (that is, the `FOAM_TITLE` variable)
-- text: The text to use for the note. If also a template is provided, the template has precedence
-- variables: Variables to use in the text or template
-- date: The date used to resolve the FOAM*DATE*\* variables. in `YYYY-MM-DD` format
-- onFileExists?: 'overwrite' | 'open' | 'ask' | 'cancel': What to do in case the target file already exists
+- `notePath`: The path of the note to create. If relative it will be resolved against the workspace root.
+- `templatePath`: The path of the template to use. If relative it will be resolved against the workspace root.
+- `title`: The title of the note (that is, the `FOAM_TITLE` variable)
+- `text`: The text to use for the note. If also a template is provided, the template has precedence
+- `variables`: Variables to use in the text or template
+- `date`: The date used to resolve the FOAM*DATE*\* variables. in `YYYY-MM-DD` format
+- `onFileExists?: 'overwrite' | 'open' | 'ask' | 'cancel'`: What to do in case the target file already exists
 
 To customize a command and associate a key binding to it, open the key binding settings and add the appropriate configuration, here are some examples:
 

docs/user/features/daily-notes.md

@@ -1,8 +1,8 @@
 # Daily Notes
 
-Daily notes allow you to quickly create and access a new notes file for each day. This is a surpisingly effective and increasingly common strategy to organize notes and manage events.
+Daily notes allow you to quickly create and access a new notes file for each day. This is a surprisingly effective and increasingly common strategy to organize notes and manage events.
 
-View today's note file by running the `Foam: Open Daily Note` command, by using the shortcut `alt+d` (note: shortcuts can be [overridden](https://code.visualstudio.com/docs/getstarted/keybindings)), or by using [#snippets](#Snippets). The name, location, and title of daily notes files is [#configurable](#Configuration).
+View today's note file by running the `Foam: Open Daily Note` command, by using the shortcut `alt+d` (note: shortcuts can be [overridden](https://code.visualstudio.com/docs/getstarted/keybindings)), or by using [#snippets](#Snippets). The name, location, and title of daily notes files are [#configurable](#Configuration).
 
 ## Roam-style Automatic Daily Notes
 
@@ -29,11 +29,11 @@ Create a link to a recent daily note using [snippets](https://code.visualstudio.
 
 ## Configuration
 
-By default, Daily Notes will be created in a file called `yyyy-mm-dd.md` in the workspace's `journals` folder, with a heading `yyyy-mm-dd`.
+By default, Daily Notes will be created in a file called `yyyy-mm-dd.md` in the workspace's `journals` folder, with the heading `yyyy-mm-dd`.
 
 These settings can be overridden in your workspace or global `.vscode/settings.json` file, using the [**dateformat** date masking syntax](https://github.com/felixge/node-dateformat#mask-options):
 
-It's possible to customize path and heading of your daily notes, by following the [dateformat masking syntax](https://github.com/felixge/node-dateformat#mask-options).
+It's possible to customize the path and heading of your daily notes, by following the [dateformat masking syntax](https://github.com/felixge/node-dateformat#mask-options).
 The following properties can be used:
 
 ```json
@@ -45,7 +45,7 @@ The following properties can be used:
 
 The above configuration would create a file `journal/daily-note-2020-07-25.mdx`, with the heading `Journal Entry, Sunday, July 25`.
 
-> NOTE: It is possible to set the filepath of a daily note according to the date using the special [[note-properties]] configurable for [[Note Templates]]. Specifically see [[note-templates#Example of date-based|Example of date-based filepath]]. Using the template property will override any setting configured through `.vscode/settings.json`.
+> NOTE: It is possible to set the filepath of a daily note according to the date using the special [[note-properties]] configurable for [[Note Templates]]. Specifically, see [[note-templates#Example of date-based|Example of date-based filepath]]. Using the template property will override any setting configured through `.vscode/settings.json`.
 
 ## Extend Functionality (Weekly, Monthly, Quarterly Notes)
 

docs/user/features/wikilinks.md

@@ -20,7 +20,10 @@ Remember, with `CTRL/CMD+click` on a wikilink you can navigate to the note, or c
 
 ## Support for sections
 
-Foam supports autocompletion, navigation, embedding and diagnostics for note sections. Just use the standard wiki syntax of `[[resource#Section Title]]`.
+Foam supports autocompletion, navigation, embedding and diagnostics for note sections. Just use the standard wiki syntax of `[[resource#Section Title]]`. 
+- If it's an external file, `[your link will need the filename](other-file.md#that-section-I-want-to-link-to)`, but
+- if it's an anchor within the same document, `[you just need an octothorpe and the section name](#that-section-above)`.  
+- Doesn't matter what heading-level the anchor is; whether you're linking to an `H1` like `# MEN WALK ON MOON` or an `H2` like `## Astronauts Land on Plain`, the link syntax uses a single octothorpe: `[Walk!](#men-walk-on-moon)` and `[Land!](#astronauts-land-on-plain-collect-rocks-plant-flag)`. Autocomplete is your friend here.
 
 ## Markdown compatibility
 

docs/user/getting-started/recommended-extensions.md

@@ -6,11 +6,11 @@ This list is subject to change.
 
 - [Foam for VSCode](https://marketplace.visualstudio.com/items?itemName=foam.foam-vscode) (alpha)
 - [Markdown All In One](https://marketplace.visualstudio.com/items?itemName=yzhang.markdown-all-in-one)
-- [Paste Image](https://marketplace.visualstudio.com/items?itemName=mushan.vscode-paste-image)
+- [Prettier](https://marketplace.visualstudio.com/items?itemName=esbenp.prettier-vscode)
 
 ## Extensions For Additional Features
 
-These extensions are not (yet?) defined in `.vscode/extensions.json`, but have been used by others and shown to play nice with Foam.
+These extensions are not defined in `.vscode/extensions.json`, but have been used by others and shown to play nice with Foam.
 
 - [Emojisense](https://marketplace.visualstudio.com/items?itemName=bierner.emojisense)
 - [Markdown Emoji](https://marketplace.visualstudio.com/items?itemName=bierner.markdown-emoji) (adds `:smile:` syntax, works with emojisense to provide autocomplete for this syntax)

docs/user/recipes/add-images-to-notes.md

@@ -2,8 +2,12 @@
 
 This #recipe allows you to paste images on to your notes.
 
-You can directly link and paste images that are copied to the clipboard using either the [Paste
-Image](https://marketplace.visualstudio.com/items?itemName=mushan.vscode-paste-image)
-extension, or the [Markdown Image](https://marketplace.visualstudio.com/items?itemName=hancel.markdown-image) extension.
+VScode (since
+[1.79](https://code.visualstudio.com/updates/v1_79#_copy-external-media-files-into-workspace-on-drop-or-paste-for-markdown))
+now has the ability to paste images from the clipboard, or drag-and-drop image
+files, directly into markdown documents. The file will be created in the
+workspace, and a link generated in Markdown format. 
 
-The former does not have MDX support (yet), the latter does.
+VSCode settings under `Markdown > Copy Files` and `Markdown > Editor > Drop` can
+be used to configure where the files get placed in your workspace, how they're
+named, how conflicts with existing files are handled, and more.

docs/user/recipes/capture-notes-with-shortcuts-and-github-actions.md

@@ -29,6 +29,9 @@ on:
 jobs:
   store_data:
     runs-on: ubuntu-latest
+    # If you encounter a 403 error from a workflow run, try uncommenting the following 2 lines (taken from: https://stackoverflow.com/questions/75880266/cant-make-push-on-a-repo-with-github-actions accepted answer)
+    # permissions:
+          # contents: write
     steps:
     - uses: actions/checkout@master
     - uses: anglinb/foam-capture-action@main

docs/user/recipes/export-to-pdf.md

@@ -0,0 +1,53 @@
+# Export to PDF
+
+This #recipe shows how to export a note to PDF.
+
+## Required extensions
+
+- **[vscode-pandoc](https://marketplace.visualstudio.com/items?itemName=chrischinchilla.vscode-pandoc)**
+
+## Required third-party tools
+
+- [Pandoc](https://pandoc.org/installing.html)
+- A [LaTeX distribution](https://www.latex-project.org/get/) such as TeXLive (Linux), MacTeX (MacOS), or MikTeX (Windows)
+
+Check that Pandoc is installed by opening a terminal and running `pandoc --version`.
+
+Check that Pandoc can produce PDFs with LaTeX by running the following in the terminal.
+
+```
+echo It is working > test.md
+pandoc test.md -o test.pdf
+```
+
+## Instructions
+
+1. Create a folder in your workspace named `.pandoc`. Take note of the full path to this directory. The rest of this recipe will refer to this path as `$WORKSPACE/.pandoc`.
+
+2. Download the template file [`foam.latex`](https://raw.githubusercontent.com/Hegghammer/foam-templates/main/foam.latex) from [Hegghammer/foam-templates](https://github.com/Hegghammer/foam-templates) and place it in `$WORKSPACE/.pandoc`.
+
+3. In VSCode, open `settings.json` for your user (or just for your workspace if you prefer), and add the following line:
+
+```
+"pandoc.pdfOptString": "--from=markdown+wikilinks_title_after_pipe --resource-path $WORKSPACE/.pandoc --template foam --listings",
+```
+
+Make sure to replace `$WORKSPACE/.pandoc` with the real full path to the `.pandoc` directory you created earlier.
+
+4. Open a Foam note in VSCode.
+
+5. Press `Ctrl` + `k`, `p`. Choose "pdf", and press `Enter`.
+
+The PDF should look something like this:
+
+![Sample PDF output](../../assets/images/pdf_output.png)
+
+## Options
+
+If you include a name in the `author` parameter in the YAML of the Foam note, that name will feature in the PDF header on the top left.
+
+If you don't want syntax highlighting and frames around the codeblocks, remove `--listings` from the `pandoc.pdfOptString` parameter in `settings.json`.
+
+## Further customization
+
+If you know some LaTeX, you can [tweak](https://bookdown.org/yihui/rmarkdown-cookbook/latex-template.html) the `foam.latex` template to your needs. Alternatively, you can supply another ready-made template such as [Eisvogel](https://github.com/Wandmalfarbe/pandoc-latex-template); just place the `TEMPLATE_NAME.latex` file in `$WORKSPACE/.pandoc`. You can also use all of Pandoc's [other functionalities](https://learnbyexample.github.io/customizing-pandoc/) by tweaking the `pandoc.pdfOptString` parameter in `settings.json`.

docs/user/recipes/recipes.md

@@ -1,19 +1,21 @@
 <!-- omit in toc -->
+
 # Recipes
 
 A #recipe is a guide, tip or strategy for getting the most out of your Foam workspace!
 
-- [Contribute](#contribute)
-- [Take smart notes](#take-smart-notes)
-- [Discover](#discover)
-- [Organise](#organise)
-- [Write](#write)
-- [Version control](#version-control)
-- [Publish](#publish)
-- [Collaborate](#collaborate)
-- [Workflow](#workflow)
-- [Creative ideas](#creative-ideas)
-- [Other](#other)
+- [Recipes](#recipes)
+  - [Contribute](#contribute)
+  - [Take smart notes](#take-smart-notes)
+  - [Discover](#discover)
+  - [Organise](#organise)
+  - [Write](#write)
+  - [Version control](#version-control)
+  - [Publish](#publish)
+  - [Collaborate](#collaborate)
+  - [Workflow](#workflow)
+  - [Creative ideas](#creative-ideas)
+  - [Other](#other)
 
 ## Contribute
 
@@ -75,11 +77,11 @@ A #recipe is a guide, tip or strategy for getting the most out of your Foam work
 - Publish using community templates
   - [[publish-to-netlify-with-eleventy]] by [@juanfrank77](https://github.com/juanfrank77)
   - [[generate-gatsby-site]] by [@mathieudutour](https://github.com/mathieudutour) and [@hikerpig](https://github.com/hikerpig)
-  - [foamy-nextjs](https://github.com/yenly/foamy-nextjs) by [@yenly](https://github.com/yenly)
 - Make the site your own by [[publish-to-github]].
 - Render math symbols, by either
   - adding client-side [[math-support-with-mathjax]] to the default [[publish-to-github-pages]] site
   - adding a custom Jekyll plugin to support [[math-support-with-katex]]
+- Export note to PDF [[export-to-pdf]]
 
 ## Collaborate
 
@@ -140,6 +142,7 @@ _See [[contribution-guide]] and [[how-to-write-recipes]]._
 [publish-to-github]: ../publishing/publish-to-github.md "Publish to GitHub"
 [math-support-with-mathjax]: ../publishing/math-support-with-mathjax.md "Math Support"
 [math-support-with-katex]: ../publishing/math-support-with-katex.md "Katex Math Rendering"
+[export-to-pdf]: export-to-pdf.md "Export to PDF"
 [real-time-collaboration]: real-time-collaboration.md "Real-time Collaboration"
 [capture-notes-with-drafts-pro]: capture-notes-with-drafts-pro.md "Capture Notes With Drafts Pro"
 [capture-notes-with-shortcuts-and-github-actions]: capture-notes-with-shortcuts-and-github-actions.md "Capture Notes With Shortcuts and GitHub Actions"

lerna.json

@@ -4,5 +4,5 @@
   ],
   "npmClient": "yarn",
   "useWorkspaces": true,
-  "version": "0.25.4"
+  "version": "0.26.4"
 }

packages/foam-vscode/.vscodeignore

@@ -6,6 +6,7 @@ out/**/*.spec.*
 test-data/**
 src/**
 jest.config.js
+esbuild.js
 .test-workspace
 .gitignore
 vsc-extension-quickstart.md

packages/foam-vscode/CHANGELOG.md

@@ -4,6 +4,87 @@ All notable changes to the "foam-vscode" extension will be documented in this fi
 
 Check [Keep a Changelog](http://keepachangelog.com/) for recommendations on how to structure this file.
 
+## [0.26.4] - 2024-11-12
+
+Fixes and Improvements:
+
+- Improved handling of virtual FS URIs (#1409)
+
+## [0.26.3] - 2024-11-12
+
+Fixes and Improvements:
+
+- Finetuned use of triemap (#1411 - thanks @pderaaij)
+
+## [0.26.2] - 2024-11-06
+
+Fixes and Improvements:
+
+- Performance improvements (#1406 - thanks @pderaaij)
+
+## [0.26.1] - 2024-10-09
+
+Fixes and Improvements:
+
+- Fixed issue with Buffer in web extension (#1401 - thanks @pderaaij)
+
+## [0.26.0] - 2024-10-01
+
+Features:
+
+- Foam is now a web extension! (#1395 - many thanks @pderaaij)
+
+## [0.25.12] - 2024-07-13
+
+Fixes and Improvements:
+
+- Improved YAML support (#1367)
+- Added convesion of wikilinks to markdown links (#1365 - thanks @hereistheusername)
+- Refactored util and settings code
+
+## [0.25.11] - 2024-03-18
+
+Fixes and Improvements:
+
+- Actually fixed bug in graph computation (#1345)
+
+## [0.25.10] - 2024-03-18
+
+Fixes and Improvements:
+
+- Fixed bug in graph computation (#1345)
+
+## [0.25.9] - 2024-03-17
+
+Fixes and Improvements:
+
+- Improved note creation from placeholder (#1344)
+
+## [0.25.8] - 2024-02-21
+
+Fixes and Improvements:
+
+- Upgraded dataformat to improve support for daily note naming (#1326 - thanks @rcyeh)
+
+## [0.25.7] - 2024-01-16
+
+Fixes and Improvements:
+
+- Modifies url encoding to target only the filename and skip spaces (#1322 - thanks @MABruni)
+- Minor tweak to quick action menu with suggestions for section name
+
+## [0.25.6] - 2023-12-13
+
+Fixes and Improvements:
+
+- Fixed wikilink definition encoding (#1311 - thanks @MABruni)
+
+## [0.25.5] - 2023-11-30
+
+Fixes and Improvements:
+
+- Using note title in preview (#1309)
+
 ## [0.25.4] - 2023-09-19
 
 Fixes and Improvements:

packages/foam-vscode/esbuild.js

@@ -0,0 +1,111 @@
+// also see https://code.visualstudio.com/api/working-with-extensions/bundling-extension
+const assert = require('assert');
+const esbuild = require('esbuild');
+const polyfillPlugin = require('esbuild-plugin-polyfill-node');
+
+// pass the platform to esbuild as an argument
+
+function getPlatform() {
+  const args = process.argv.slice(2);
+  const pArg = args.find(arg => arg.startsWith('--platform='));
+  if (pArg) {
+    return pArg.split('=')[1];
+  }
+  throw new Error('No platform specified. Pass --platform <web|node>.');
+}
+
+const platform = getPlatform();
+assert(['web', 'node'].includes(platform), 'Platform must be "web" or "node".');
+
+const production = process.argv.includes('--production');
+const watch = process.argv.includes('--watch');
+
+const config = {
+  web: {
+    platform: 'browser',
+    format: 'cjs',
+    outfile: `out/bundles/extension-web.js`,
+    plugins: [
+      polyfillPlugin.polyfillNode({
+        // Options (optional)
+      }),
+      {
+        name: 'path-browserify',
+        setup(build) {
+          build.onResolve({ filter: /^path$/ }, args => {
+            return { path: require.resolve('path-browserify') };
+          });
+        },
+      },
+      {
+        name: 'wikilink-embed',
+        setup(build) {
+          build.onResolve({ filter: /wikilink-embed/ }, args => {
+            return {
+              path: require.resolve(
+                args.resolveDir + '/wikilink-embed-web-extension.ts'
+              ),
+            };
+          });
+        },
+      },
+    ],
+  },
+  node: {
+    platform: 'node',
+    format: 'cjs',
+    outfile: `out/bundles/extension-node.js`,
+    plugins: [],
+  },
+};
+
+async function main() {
+  const ctx = await esbuild.context({
+    ...config[platform],
+    entryPoints: ['src/extension.ts'],
+    bundle: true,
+    minify: production,
+    sourcemap: !production,
+    sourcesContent: false,
+    external: ['vscode'],
+    logLevel: 'silent',
+    plugins: [
+      ...config[platform].plugins,
+      /* add to the end of plugins array */
+      esbuildProblemMatcherPlugin,
+    ],
+  });
+  if (watch) {
+    await ctx.watch();
+  } else {
+    await ctx.rebuild();
+    await ctx.dispose();
+  }
+}
+
+/**
+ * @type {import('esbuild').Plugin}
+ */
+const esbuildProblemMatcherPlugin = {
+  name: 'esbuild-problem-matcher',
+
+  setup(build) {
+    build.onStart(() => {
+      console.log('[watch] build started');
+    });
+    build.onEnd(result => {
+      result.errors.forEach(({ text, location }) => {
+        console.error(`✘ [ERROR] ${text}`);
+        console.error(
+          `    ${location.file}:${location.line}:${location.column}:`
+        );
+      });
+      console.log('[watch] build finished');
+    });
+  },
+};
+
+main().catch(e => {
+  console.error(e);
+  process.exit(1);
+});

packages/foam-vscode/package.json

@@ -8,7 +8,7 @@
     "type": "git"
   },
   "homepage": "https://github.com/foambubble/foam",
-  "version": "0.25.4",
+  "version": "0.26.4",
   "license": "MIT",
   "publisher": "foam",
   "engines": {
@@ -21,7 +21,8 @@
   "activationEvents": [
     "workspaceContains:.vscode/foam.json"
   ],
-  "main": "./out/extension.js",
+  "main": "./out/bundles/extension-node.js",
+  "browser": "./out/bundles/extension-web.js",
   "capabilities": {
     "untrustedWorkspaces": {
       "supported": "limited",
@@ -346,6 +347,14 @@
         "command": "foam-vscode.open-resource",
         "title": "Foam: Open Resource"
       },
+      {
+        "command": "foam-vscode.convert-link-style-inplace",
+        "title": "Foam: convert link style in place"
+      },
+      {
+        "command": "foam-vscode.convert-link-style-incopy",
+        "title": "Foam: convert link format in copy"
+      },
       {
         "command": "foam-vscode.views.orphans.group-by:folder",
         "title": "Group By Folder",
@@ -649,21 +658,23 @@
     ]
   },
   "scripts": {
-    "build": "tsc -p ./",
-    "pretest": "yarn build",
-    "test": "node ./out/test/run-tests.js",
-    "pretest:unit": "yarn build",
-    "test:unit": "node ./out/test/run-tests.js --unit",
-    "pretest:e2e": "yarn build",
-    "test:e2e": "node ./out/test/run-tests.js --e2e",
+    "build:node": "node esbuild.js --platform=node",
+    "build:web": "node esbuild.js --platform=web",
+    "build": "yarn build:node && yarn build:web",
+    "vscode:prepublish": "yarn clean && yarn build:node --production && yarn build:web --production",
+    "compile": "tsc -p ./",
+    "test-reset-workspace": "rm -rf .test-workspace && mkdir .test-workspace && touch .test-workspace/.keep",
+    "test-setup": "yarn compile && yarn build && yarn test-reset-workspace",
+    "test": "yarn test-setup && node ./out/test/run-tests.js",
+    "test:unit": "yarn test-setup && node ./out/test/run-tests.js --unit",
+    "test:e2e": "yarn test-setup && node ./out/test/run-tests.js --e2e",
     "lint": "dts lint src",
     "clean": "rimraf out",
     "watch": "tsc --build ./tsconfig.json --watch",
     "vscode:start-debugging": "yarn clean && yarn watch",
-    "esbuild-base": "esbuild ./src/extension.ts --bundle --outfile=out/extension.js --external:vscode --format=cjs --platform=node",
-    "vscode:prepublish": "yarn run esbuild-base -- --minify",
     "package-extension": "npx vsce package --yarn",
     "install-extension": "code --install-extension ./foam-vscode-$npm_package_version.vsix",
+    "open-in-browser": "vscode-test-web --quality=stable --browser=chromium --extensionDevelopmentPath=. ",
     "publish-extension-openvsx": "npx ovsx publish foam-vscode-$npm_package_version.vsix -p $OPENVSX_TOKEN",
     "publish-extension-vscode": "npx vsce publish --packagePath foam-vscode-$npm_package_version.vsix",
     "publish-extension": "yarn publish-extension-vscode && yarn publish-extension-openvsx"
@@ -680,8 +691,10 @@
     "@types/vscode": "^1.70.0",
     "@typescript-eslint/eslint-plugin": "^5.51.0",
     "@typescript-eslint/parser": "^5.51.0",
+    "@vscode/test-web": "^0.0.62",
     "dts-cli": "^1.6.3",
     "esbuild": "^0.17.7",
+    "esbuild-plugin-polyfill-node": "^0.3.0",
     "eslint": "^8.33.0",
     "eslint-import-resolver-typescript": "^3.5.3",
     "eslint-plugin-import": "^2.27.5",
@@ -699,13 +712,16 @@
     "wait-for-expect": "^3.0.2"
   },
   "dependencies": {
-    "dateformat": "^3.0.3",
+    "dateformat": "4.5.1",
     "detect-newline": "^3.1.0",
     "github-slugger": "^1.4.0",
     "gray-matter": "^4.0.2",
+    "js-sha1": "^0.7.0",
     "lodash": "^4.17.21",
     "lru-cache": "^7.14.1",
     "markdown-it-regex": "^0.2.0",
+    "mnemonist": "^0.39.8",
+    "path-browserify": "^1.0.1",
     "remark-frontmatter": "^2.0.0",
     "remark-parse": "^8.0.2",
     "remark-wiki-link": "^0.0.4",

packages/foam-vscode/src/core/janitor/convert-links-format.test.ts

@@ -0,0 +1,71 @@
+import { convertLinkFormat } from '.';
+import { TEST_DATA_DIR } from '../../test/test-utils';
+import { MarkdownResourceProvider } from '../services/markdown-provider';
+import { Resource } from '../model/note';
+import { FoamWorkspace } from '../model/workspace';
+import { Logger } from '../utils/log';
+import fs from 'fs';
+import { URI } from '../model/uri';
+import { createMarkdownParser } from '../services/markdown-parser';
+import { FileDataStore } from '../../test/test-datastore';
+
+Logger.setLevel('error');
+
+describe('generateStdMdLink', () => {
+  let _workspace: FoamWorkspace;
+  // TODO slug must be reserved for actual slugs, not file names
+  const findBySlug = (slug: string): Resource => {
+    return _workspace
+      .list()
+      .find(res => res.uri.getName() === slug) as Resource;
+  };
+
+  beforeAll(async () => {
+    /** Use fs for reading files in units where vscode.workspace is unavailable */
+    const readFile = async (uri: URI) =>
+      (await fs.promises.readFile(uri.toFsPath())).toString();
+    const dataStore = new FileDataStore(
+      readFile,
+      TEST_DATA_DIR.joinPath('__scaffold__').toFsPath()
+    );
+    const parser = createMarkdownParser();
+    const mdProvider = new MarkdownResourceProvider(dataStore, parser);
+    _workspace = await FoamWorkspace.fromProviders([mdProvider], dataStore);
+  });
+
+  it('initialised test graph correctly', () => {
+    expect(_workspace.list().length).toEqual(11);
+  });
+
+  it('can generate markdown links correctly', async () => {
+    const note = findBySlug('file-with-different-link-formats');
+    const actual = note.links
+      .filter(link => link.type === 'wikilink')
+      .map(link => convertLinkFormat(link, 'link', _workspace, note));
+    const expected: string[] = [
+      '[first-document](first-document.md)',
+      '[second-document](second-document.md)',
+      '[[non-exist-file]]',
+      '[#one section](<file-with-different-link-formats.md#one section>)',
+      '[another name](<file-with-different-link-formats.md#one section>)',
+      '[an alias](first-document.md)',
+      '[first-document](first-document.md)',
+    ];
+    expect(actual.length).toEqual(expected.length);
+    actual.forEach((LinkReplace, index) => {
+      expect(LinkReplace.newText).toEqual(expected[index]);
+    });
+  });
+
+  it('can generate wikilinks correctly', async () => {
+    const note = findBySlug('file-with-different-link-formats');
+    const actual = note.links
+      .filter(link => link.type === 'link')
+      .map(link => convertLinkFormat(link, 'wikilink', _workspace, note));
+    const expected: string[] = ['[[first-document|file]]'];
+    expect(actual.length).toEqual(expected.length);
+    actual.forEach((LinkReplace, index) => {
+      expect(LinkReplace.newText).toEqual(expected[index]);
+    });
+  });
+});

packages/foam-vscode/src/core/janitor/convert-links-format.ts

@@ -0,0 +1,83 @@
+import { Resource, ResourceLink } from '../model/note';
+import { URI } from '../model/uri';
+import { Range } from '../model/range';
+import { FoamWorkspace } from '../model/workspace';
+import { isNone } from '../utils';
+import { MarkdownLink } from '../services/markdown-link';
+
+export interface LinkReplace {
+  newText: string;
+  range: Range /* old range */;
+}
+
+/**
+ * convert a link based on its workspace and the note containing it.
+ * According to targetFormat parameter to decide output format. If link.type === targetFormat, then it simply copy
+ * the rawText into LinkReplace. Therefore, it's recommended to filter before conversion.
+ * If targetFormat isn't supported, or the target resource pointed by link cannot be found, the function will throw
+ * exception.
+ * @param link
+ * @param targetFormat 'wikilink' | 'link'
+ * @param workspace
+ * @param note
+ * @returns LinkReplace { newText: string; range: Range; }
+ */
+export function convertLinkFormat(
+  link: ResourceLink,
+  targetFormat: 'wikilink' | 'link',
+  workspace: FoamWorkspace,
+  note: Resource | URI
+): LinkReplace {
+  const resource = note instanceof URI ? workspace.find(note) : note;
+  const targetUri = workspace.resolveLink(resource, link);
+  /* If it's already the target format or a placeholder, no transformation happens */
+  if (link.type === targetFormat || targetUri.scheme === 'placeholder') {
+    return {
+      newText: link.rawText,
+      range: link.range,
+    };
+  }
+
+  let { target, section, alias } = MarkdownLink.analyzeLink(link);
+  let sectionDivider = section ? '#' : '';
+
+  if (isNone(targetUri)) {
+    throw new Error(
+      `Unexpected state: link to: "${link.rawText}" is not resolvable`
+    );
+  }
+
+  const targetRes = workspace.find(targetUri);
+  let relativeUri = targetRes.uri.relativeTo(resource.uri.getDirectory());
+
+  if (targetFormat === 'wikilink') {
+    return MarkdownLink.createUpdateLinkEdit(link, {
+      target: workspace.getIdentifier(relativeUri),
+      type: 'wikilink',
+    });
+  }
+
+  if (targetFormat === 'link') {
+    /* if alias is empty, construct one as target#section */
+    if (alias === '') {
+      /* in page anchor have no filename */
+      if (relativeUri.getBasename() === resource.uri.getBasename()) {
+        target = '';
+      }
+      alias = `${target}${sectionDivider}${section}`;
+    }
+
+    /* if it's originally an embedded note, the markdown link shouldn't be embedded */
+    const isEmbed = targetRes.type === 'image' ? link.isEmbed : false;
+
+    return MarkdownLink.createUpdateLinkEdit(link, {
+      alias: alias,
+      target: relativeUri.path,
+      isEmbed: isEmbed,
+      type: 'link',
+    });
+  }
+  throw new Error(
+    `Unexpected state: targetFormat: ${targetFormat} is not supported`
+  );
+}

packages/foam-vscode/src/core/janitor/generate-link-references.test.ts

@@ -36,7 +36,7 @@ describe('generateLinkReferences', () => {
   });
 
   it('initialised test graph correctly', () => {
-    expect(_workspace.list().length).toEqual(10);
+    expect(_workspace.list().length).toEqual(11);
   });
 
   it('should add link references to a file that does not have them', async () => {

packages/foam-vscode/src/core/janitor/index.ts

@@ -1,2 +1,3 @@
 export { generateLinkReferences } from './generate-link-references';
 export { generateHeading } from './generate-headings';
+export { convertLinkFormat } from './convert-links-format';

packages/foam-vscode/src/core/model/foam.ts

@@ -5,7 +5,7 @@ import { FoamGraph } from './graph';
 import { ResourceParser } from './note';
 import { ResourceProvider } from './provider';
 import { FoamTags } from './tags';
-import { Logger } from '../utils/log';
+import { Logger, withTiming, withTimingAsync } from '../utils/log';
 
 export interface Services {
   dataStore: IDataStore;
@@ -28,24 +28,25 @@ export const bootstrap = async (
   initialProviders: ResourceProvider[],
   defaultExtension: string = '.md'
 ) => {
-  const tsStart = Date.now();
-
-  const workspace = await FoamWorkspace.fromProviders(
-    initialProviders,
-    dataStore,
-    defaultExtension
+  const workspace = await withTimingAsync(
+    () =>
+      FoamWorkspace.fromProviders(
+        initialProviders,
+        dataStore,
+        defaultExtension
+      ),
+    ms => Logger.info(`Workspace loaded in ${ms}ms`)
   );
 
-  const tsWsDone = Date.now();
-  Logger.info(`Workspace loaded in ${tsWsDone - tsStart}ms`);
+  const graph = withTiming(
+    () => FoamGraph.fromWorkspace(workspace, true),
+    ms => Logger.info(`Graph loaded in ${ms}ms`)
+  );
 
-  const graph = FoamGraph.fromWorkspace(workspace, true);
-  const tsGraphDone = Date.now();
-  Logger.info(`Graph loaded in ${tsGraphDone - tsWsDone}ms`);
-
-  const tags = FoamTags.fromWorkspace(workspace, true);
-  const tsTagsEnd = Date.now();
-  Logger.info(`Tags loaded in ${tsTagsEnd - tsGraphDone}ms`);
+  const tags = withTiming(
+    () => FoamTags.fromWorkspace(workspace, true),
+    ms => Logger.info(`Tags loaded in ${ms}ms`)
+  );
 
   watcher?.onDidChange(async uri => {
     if (matcher.isMatch(uri)) {

packages/foam-vscode/src/core/model/graph.test.ts

@@ -139,6 +139,21 @@ describe('Graph', () => {
     ).toEqual(['/path/another/page-c.md', '/somewhere/page-b.md']);
   });
 
+  it('should create inbound connections when targeting a section', () => {
+    const noteA = createTestNote({
+      uri: '/path/to/page-a.md',
+      links: [{ slug: 'page-b#section 2' }],
+    });
+    const noteB = createTestNote({
+      uri: '/somewhere/page-b.md',
+      text: '## Section 1\n\n## Section 2',
+    });
+    const ws = createTestWorkspace().set(noteA).set(noteB);
+    const graph = FoamGraph.fromWorkspace(ws);
+
+    expect(graph.getBacklinks(noteB.uri).length).toEqual(1);
+  });
+
   it('should support attachments', () => {
     const noteA = createTestNote({
       uri: '/path/to/page-a.md',

packages/foam-vscode/src/core/model/location.ts

@@ -0,0 +1,34 @@
+import { Range } from './range';
+import { URI } from './uri';
+
+/**
+ * Represents a location inside a resource, such as a line
+ * inside a text file.
+ */
+export interface Location<T> {
+  /**
+   * The resource identifier of this location.
+   */
+  uri: URI;
+  /**
+   * The document range of this locations.
+   */
+  range: Range;
+  /**
+   * The data associated to this location.
+   */
+  data: T;
+}
+
+export abstract class Location<T> {
+  static create<T>(uri: URI, range: Range, data: T): Location<T> {
+    return { uri, range, data };
+  }
+
+  static forObjectWithRange<T extends { range: Range }>(
+    uri: URI,
+    obj: T
+  ): Location<T> {
+    return Location.create(uri, obj.range, obj);
+  }
+}

packages/foam-vscode/src/core/model/uri.ts

@@ -195,7 +195,6 @@ function encode(uri: URI, skipEncoding: boolean): string {
     : encodeURIComponentMinimal;
 
   let res = '';
-  // eslint-disable-next-line prefer-const
   let { scheme, authority, path, query, fragment } = uri;
   if (scheme) {
     res += scheme;
@@ -382,10 +381,20 @@ function encodeURIComponentMinimal(path: string): string {
  * TODO this probably needs to be moved to the workspace service
  */
 export function asAbsoluteUri(uri: URI, baseFolders: URI[]): URI {
-  return URI.file(
-    pathUtils.asAbsolutePaths(
-      uri.path,
-      baseFolders.map(f => f.path)
-    )[0]
-  );
+  const path = uri.path;
+  if (pathUtils.isAbsolute(path)) {
+    return uri;
+  }
+  let tokens = path.split('/');
+  const firstDir = tokens[0];
+  if (baseFolders.length > 1) {
+    for (const folder of baseFolders) {
+      const lastDir = folder.path.split('/').pop();
+      if (lastDir === firstDir) {
+        tokens = tokens.slice(1);
+        return folder.joinPath(...tokens);
+      }
+    }
+  }
+  return baseFolders[0].joinPath(...tokens);
 }

packages/foam-vscode/src/core/model/workspace.ts

@@ -6,6 +6,7 @@ import { Emitter } from '../common/event';
 import { ResourceProvider } from './provider';
 import { IDisposable } from '../common/lifecycle';
 import { IDataStore } from '../services/datastore';
+import TrieMap from 'mnemonist/trie-map';
 
 export class FoamWorkspace implements IDisposable {
   private onDidAddEmitter = new Emitter<Resource>();
@@ -20,7 +21,7 @@ export class FoamWorkspace implements IDisposable {
   /**
    * Resources by path
    */
-  private _resources: Map<string, Resource> = new Map();
+  private _resources: TrieMap<string, Resource> = new TrieMap();
 
   /**
    * @param defaultExtension: The default extension for notes in this workspace (e.g. `.md`)
@@ -33,7 +34,10 @@ export class FoamWorkspace implements IDisposable {
 
   set(resource: Resource) {
     const old = this.find(resource.uri);
-    this._resources.set(normalize(resource.uri.path), resource);
+
+    // store resource
+    this._resources.set(this.getTrieIdentifier(resource.uri.path), resource);
+
     isSome(old)
       ? this.onDidUpdateEmitter.fire({ old: old, new: resource })
       : this.onDidAddEmitter.fire(resource);
@@ -41,8 +45,8 @@ export class FoamWorkspace implements IDisposable {
   }
 
   delete(uri: URI) {
-    const deleted = this._resources.get(normalize(uri.path));
-    this._resources.delete(normalize(uri.path));
+    const deleted = this._resources.get(this.getTrieIdentifier(uri));
+    this._resources.delete(this.getTrieIdentifier(uri));
 
     isSome(deleted) && this.onDidDeleteEmitter.fire(deleted);
     return deleted ?? null;
@@ -57,7 +61,11 @@ export class FoamWorkspace implements IDisposable {
   }
 
   public resources(): IterableIterator<Resource> {
-    return this._resources.values();
+    const resources: Array<Resource> = Array.from(
+      this._resources.values()
+    ).sort(Resource.sortByPath);
+
+    return resources.values();
   }
 
   public get(uri: URI): Resource {
@@ -70,17 +78,21 @@ export class FoamWorkspace implements IDisposable {
   }
 
   public listByIdentifier(identifier: string): Resource[] {
-    const needle = normalize('/' + identifier);
+    let needle = this.getTrieIdentifier(identifier);
+
     const mdNeedle =
-      getExtension(needle) !== this.defaultExtension
-        ? needle + this.defaultExtension
+      getExtension(normalize(identifier)) !== this.defaultExtension
+        ? this.getTrieIdentifier(identifier + this.defaultExtension)
         : undefined;
+
     const resources: Resource[] = [];
-    for (const key of this._resources.keys()) {
-      if (key.endsWith(mdNeedle) || key.endsWith(needle)) {
-        resources.push(this._resources.get(normalize(key)));
-      }
+
+    this._resources.find(needle).forEach(elm => resources.push(elm[1]));
+
+    if (mdNeedle) {
+      this._resources.find(mdNeedle).forEach(elm => resources.push(elm[1]));
     }
+
     return resources.sort(Resource.sortByPath);
   }
 
@@ -92,21 +104,19 @@ export class FoamWorkspace implements IDisposable {
   public getIdentifier(forResource: URI, exclude?: URI[]): string {
     const amongst = [];
     const basename = forResource.getBasename();
-    for (const res of this._resources.values()) {
-      // skip elements that cannot possibly match
-      if (!res.uri.path.endsWith(basename)) {
-        continue;
-      }
+
+    this.listByIdentifier(basename).map(res => {
       // skip self
       if (res.uri.isEqual(forResource)) {
-        continue;
+        return;
       }
+
       // skip exclude list
       if (exclude && exclude.find(ex => ex.isEqual(res.uri))) {
-        continue;
+        return;
       }
       amongst.push(res.uri);
-    }
+    });
 
     let identifier = FoamWorkspace.getShortestIdentifier(
       forResource.path,
@@ -119,9 +129,32 @@ export class FoamWorkspace implements IDisposable {
     return identifier;
   }
 
+  /**
+   * Returns a note identifier in reversed order. Used to optimise the storage of notes in
+   * the workspace to optimise retrieval of notes.
+   *
+   * @param reference the URI path to reverse
+   */
+  private getTrieIdentifier(reference: URI | string): string {
+    let path: string;
+    if (reference instanceof URI) {
+      path = (reference as URI).path;
+    } else {
+      path = reference as string;
+    }
+
+    let reversedPath = normalize(path).split('/').reverse().join('/');
+
+    if (reversedPath.indexOf('/') < 0) {
+      reversedPath = reversedPath + '/';
+    }
+
+    return reversedPath;
+  }
+
   public find(reference: URI | string, baseUri?: URI): Resource | null {
     if (reference instanceof URI) {
-      return this._resources.get(normalize((reference as URI).path)) ?? null;
+      return this._resources.get(this.getTrieIdentifier(reference)) ?? null;
     }
     let resource: Resource | null = null;
     const [path, fragment] = (reference as string).split('#');
@@ -135,7 +168,7 @@ export class FoamWorkspace implements IDisposable {
           : isSome(baseUri)
           ? baseUri.resolve(candidate).path
           : null;
-        resource = this._resources.get(normalize(searchKey));
+        resource = this._resources.get(this.getTrieIdentifier(searchKey));
         if (resource) {
           break;
         }

packages/foam-vscode/src/core/services/markdown-link.test.ts

@@ -254,4 +254,185 @@ describe('MarkdownLink', () => {
       expect(edit.range).toEqual(link.range);
     });
   });
+
+  describe('convert wikilink to link', () => {
+    it('should generate default alias if no one', () => {
+      const wikilink = parser.parse(getRandomURI(), `[[wikilink]]`).links[0];
+      const wikilinkEdit = MarkdownLink.createUpdateLinkEdit(wikilink, {
+        type: 'link',
+      });
+      expect(wikilinkEdit.newText).toEqual(`[wikilink](wikilink)`);
+      expect(wikilinkEdit.range).toEqual(wikilink.range);
+
+      const wikilinkWithSection = parser.parse(
+        getRandomURI(),
+        `[[wikilink#section]]`
+      ).links[0];
+      const wikilinkWithSectionEdit = MarkdownLink.createUpdateLinkEdit(
+        wikilinkWithSection,
+        {
+          type: 'link',
+        }
+      );
+      expect(wikilinkWithSectionEdit.newText).toEqual(
+        `[wikilink#section](wikilink#section)`
+      );
+      expect(wikilinkWithSectionEdit.range).toEqual(wikilinkWithSection.range);
+    });
+
+    it('should use alias in the wikilik the if there has one', () => {
+      const wikilink = parser.parse(
+        getRandomURI(),
+        `[[wikilink#section|alias]]`
+      ).links[0];
+      const wikilinkEdit = MarkdownLink.createUpdateLinkEdit(wikilink, {
+        type: 'link',
+      });
+      expect(wikilinkEdit.newText).toEqual(`[alias](wikilink#section)`);
+      expect(wikilinkEdit.range).toEqual(wikilink.range);
+    });
+  });
+
+  describe('convert link to wikilink', () => {
+    it('should reorganize target, section, and alias in wikilink manner', () => {
+      const link = parser.parse(getRandomURI(), `[link](to/path.md)`).links[0];
+      const linkEdit = MarkdownLink.createUpdateLinkEdit(link, {
+        type: 'wikilink',
+      });
+      expect(linkEdit.newText).toEqual(`[[to/path.md|link]]`);
+      expect(linkEdit.range).toEqual(link.range);
+
+      const linkWithSection = parser.parse(
+        getRandomURI(),
+        `[link](to/path.md#section)`
+      ).links[0];
+      const linkWithSectionEdit = MarkdownLink.createUpdateLinkEdit(
+        linkWithSection,
+        {
+          type: 'wikilink',
+        }
+      );
+      expect(linkWithSectionEdit.newText).toEqual(
+        `[[to/path.md#section|link]]`
+      );
+      expect(linkWithSectionEdit.range).toEqual(linkWithSection.range);
+    });
+
+    it('should use alias in the wikilik the if there has one', () => {
+      const wikilink = parser.parse(
+        getRandomURI(),
+        `[[wikilink#section|alias]]`
+      ).links[0];
+      const wikilinkEdit = MarkdownLink.createUpdateLinkEdit(wikilink, {
+        type: 'link',
+      });
+      expect(wikilinkEdit.newText).toEqual(`[alias](wikilink#section)`);
+      expect(wikilinkEdit.range).toEqual(wikilink.range);
+    });
+  });
+
+  describe('convert to its original type', () => {
+    it('should remain unchanged', () => {
+      const link = parser.parse(getRandomURI(), `[link](to/path.md#section)`)
+        .links[0];
+      const linkEdit = MarkdownLink.createUpdateLinkEdit(link, {
+        type: 'link',
+      });
+      expect(linkEdit.newText).toEqual(`[link](to/path.md#section)`);
+      expect(linkEdit.range).toEqual(link.range);
+
+      const wikilink = parser.parse(
+        getRandomURI(),
+        `[[wikilink#section|alias]]`
+      ).links[0];
+      const wikilinkEdit = MarkdownLink.createUpdateLinkEdit(wikilink, {
+        type: 'wikilink',
+      });
+      expect(wikilinkEdit.newText).toEqual(`[[wikilink#section|alias]]`);
+      expect(wikilinkEdit.range).toEqual(wikilink.range);
+    });
+  });
+
+  describe('change isEmbed property', () => {
+    it('should change isEmbed only', () => {
+      const wikilink = parser.parse(getRandomURI(), `[[wikilink]]`).links[0];
+      const wikilinkEdit = MarkdownLink.createUpdateLinkEdit(wikilink, {
+        isEmbed: true,
+      });
+      expect(wikilinkEdit.newText).toEqual(`![[wikilink]]`);
+      expect(wikilinkEdit.range).toEqual(wikilink.range);
+
+      const link = parser.parse(getRandomURI(), `![link](to/path.md)`).links[0];
+      const linkEdit = MarkdownLink.createUpdateLinkEdit(link, {
+        isEmbed: false,
+      });
+      expect(linkEdit.newText).toEqual(`[link](to/path.md)`);
+      expect(linkEdit.range).toEqual(link.range);
+    });
+
+    it('should be unchanged if the update value is the same as the original one', () => {
+      const embeddedWikilink = parser.parse(getRandomURI(), `![[wikilink]]`)
+        .links[0];
+      const embeddedWikilinkEdit = MarkdownLink.createUpdateLinkEdit(
+        embeddedWikilink,
+        {
+          isEmbed: true,
+        }
+      );
+      expect(embeddedWikilinkEdit.newText).toEqual(`![[wikilink]]`);
+      expect(embeddedWikilinkEdit.range).toEqual(embeddedWikilink.range);
+
+      const link = parser.parse(getRandomURI(), `[link](to/path.md)`).links[0];
+      const linkEdit = MarkdownLink.createUpdateLinkEdit(link, {
+        isEmbed: false,
+      });
+      expect(linkEdit.newText).toEqual(`[link](to/path.md)`);
+      expect(linkEdit.range).toEqual(link.range);
+    });
+  });
+
+  describe('insert angles', () => {
+    it('should insert angles when meeting space in links', () => {
+      const link = parser.parse(getRandomURI(), `![link](to/path.md)`).links[0];
+      const linkAddSection = MarkdownLink.createUpdateLinkEdit(link, {
+        section: 'one section',
+      });
+      expect(linkAddSection.newText).toEqual(
+        `![link](<to/path.md#one section>)`
+      );
+      expect(linkAddSection.range).toEqual(link.range);
+
+      const linkChangingTarget = parser.parse(
+        getRandomURI(),
+        `[link](to/path.md#one-section)`
+      ).links[0];
+      const linkEdit = MarkdownLink.createUpdateLinkEdit(linkChangingTarget, {
+        target: 'to/another path.md',
+      });
+      expect(linkEdit.newText).toEqual(
+        `[link](<to/another path.md#one-section>)`
+      );
+      expect(linkEdit.range).toEqual(linkChangingTarget.range);
+
+      const wikilink = parser.parse(getRandomURI(), `[[wikilink#one section]]`)
+        .links[0];
+      const wikilinkEdit = MarkdownLink.createUpdateLinkEdit(wikilink, {
+        type: 'link',
+      });
+      expect(wikilinkEdit.newText).toEqual(
+        `[wikilink#one section](<wikilink#one section>)`
+      );
+      expect(wikilinkEdit.range).toEqual(wikilink.range);
+    });
+
+    it('should not insert angles in wikilink', () => {
+      const wikilink = parser.parse(getRandomURI(), `[[wikilink#one section]]`)
+        .links[0];
+      const wikilinkEdit = MarkdownLink.createUpdateLinkEdit(wikilink, {
+        target: 'another wikilink',
+      });
+      expect(wikilinkEdit.newText).toEqual(`[[another wikilink#one section]]`);
+      expect(wikilinkEdit.range).toEqual(wikilink.range);
+    });
+  });
 });

packages/foam-vscode/src/core/services/markdown-link.ts

@@ -38,7 +38,13 @@ export abstract class MarkdownLink {
 
   public static createUpdateLinkEdit(
     link: ResourceLink,
-    delta: { target?: string; section?: string; alias?: string }
+    delta: {
+      target?: string;
+      section?: string;
+      alias?: string;
+      type?: 'wikilink' | 'link';
+      isEmbed?: boolean;
+    }
   ) {
     const { target, section, alias } = MarkdownLink.analyzeLink(link);
     const newTarget = delta.target ?? target;
@@ -46,21 +52,27 @@ export abstract class MarkdownLink {
     const newAlias = delta.alias ?? alias ?? '';
     const sectionDivider = newSection ? '#' : '';
     const aliasDivider = newAlias ? '|' : '';
-    const embed = link.isEmbed ? '!' : '';
-    if (link.type === 'wikilink') {
+    const embed = delta.isEmbed ?? link.isEmbed ? '!' : '';
+    const type = delta.type ?? link.type;
+    if (type === 'wikilink') {
       return {
         newText: `${embed}[[${newTarget}${sectionDivider}${newSection}${aliasDivider}${newAlias}]]`,
         range: link.range,
       };
     }
-    if (link.type === 'link') {
+    if (type === 'link') {
+      const defaultAlias = () => {
+        return `${newTarget}${sectionDivider}${newSection}`;
+      };
+      const useAngles =
+        newTarget.indexOf(' ') > 0 || newSection.indexOf(' ') > 0;
       return {
-        newText: `${embed}[${newAlias}](${newTarget}${sectionDivider}${newSection})`,
+        newText: `${embed}[${newAlias ? newAlias : defaultAlias()}](${
+          useAngles ? '<' : ''
+        }${newTarget}${sectionDivider}${newSection}${useAngles ? '>' : ''})`,
         range: link.range,
       };
     }
-    throw new Error(
-      `Unexpected state: link of type ${link.type} is not supported`
-    );
+    throw new Error(`Unexpected state: link of type ${type} is not supported`);
   }
 }

packages/foam-vscode/src/core/services/markdown-parser.ts

@@ -459,9 +459,9 @@ export const getBlockFor = (
     }
   });
 
-  let nLines = startLine == -1 ? 1 : endLine - startLine;
+  let nLines = startLine === -1 ? 1 : endLine - startLine;
   let block =
-    startLine == -1
+    startLine === -1
       ? lines[searchLine] ?? ''
       : lines.slice(startLine, endLine).join('\n');
 

packages/foam-vscode/src/core/services/markdown-provider.test.ts

@@ -166,6 +166,65 @@ describe('Link resolution', () => {
         noteA.uri.withFragment('section')
       );
     });
+
+    it('should resolve wikilinks with special characters', () => {
+      const ws = createTestWorkspace();
+      const noteA = createNoteFromMarkdown(
+        `Link to [[page: a]] and [[page %b%]] and [[page? c]] and [[[page] d]] and
+         [[page ^e^]] and [[page \`f\`]] and [[page {g}]] and [[page ~i]] and
+         [[page /j]]`
+      );
+      const noteB = createNoteFromMarkdown(
+        'Note containing :',
+        '/dir1/page: a.md'
+      );
+      const noteC = createNoteFromMarkdown(
+        'Note containing %',
+        '/dir1/page %b%.md'
+      );
+      const noteD = createNoteFromMarkdown(
+        'Note containing ?',
+        '/dir1/page? c.md'
+      );
+      const noteE = createNoteFromMarkdown(
+        'Note containing ]',
+        '/dir1/[page] d.md'
+      );
+      const noteF = createNoteFromMarkdown(
+        'Note containing ^',
+        '/dir1/page ^e^.md'
+      );
+      const noteG = createNoteFromMarkdown(
+        'Note containing `',
+        '/dir1/page `f`.md'
+      );
+      const noteH = createNoteFromMarkdown(
+        'Note containing { and }',
+        '/dir1/page {g}.md'
+      );
+      const noteI = createNoteFromMarkdown(
+        'Note containing ~',
+        '/dir1/page ~i.md'
+      );
+      ws.set(noteA)
+        .set(noteB)
+        .set(noteC)
+        .set(noteD)
+        .set(noteE)
+        .set(noteF)
+        .set(noteG)
+        .set(noteH)
+        .set(noteI);
+
+      expect(ws.resolveLink(noteA, noteA.links[0])).toEqual(noteB.uri);
+      expect(ws.resolveLink(noteA, noteA.links[1])).toEqual(noteC.uri);
+      expect(ws.resolveLink(noteA, noteA.links[2])).toEqual(noteD.uri);
+      expect(ws.resolveLink(noteA, noteA.links[3])).toEqual(noteE.uri);
+      expect(ws.resolveLink(noteA, noteA.links[4])).toEqual(noteF.uri);
+      expect(ws.resolveLink(noteA, noteA.links[5])).toEqual(noteG.uri);
+      expect(ws.resolveLink(noteA, noteA.links[6])).toEqual(noteH.uri);
+      expect(ws.resolveLink(noteA, noteA.links[7])).toEqual(noteI.uri);
+    });
   });
 
   describe('Markdown direct links', () => {
@@ -311,7 +370,7 @@ describe('Generation of markdown references', () => {
       .set(createNoteFromMarkdown('Content of note C', '/dir3/page-c.md'));
 
     const references = createMarkdownReferences(workspace, noteA.uri, true);
-    expect(references.map(r => r.url)).toEqual([
+    expect(references.map(r => decodeURIComponent(r.url))).toEqual([
       '../dir2/page-b.md',
       '../dir3/page-c.md',
     ]);
@@ -329,7 +388,7 @@ describe('Generation of markdown references', () => {
       .set(createNoteFromMarkdown('Content of note C', '/dir3/page-c.md'));
 
     const references = createMarkdownReferences(workspace, noteA.uri, true);
-    expect(references.map(r => [r.url, r.label])).toEqual([
+    expect(references.map(r => [decodeURIComponent(r.url), r.label])).toEqual([
       ['../dir2/page-b.md', 'page-b'],
       ['../dir3/page-c.md', 'page-c'],
     ]);
@@ -347,9 +406,42 @@ describe('Generation of markdown references', () => {
       .set(createNoteFromMarkdown('Content of note C', '/dir3/page-c.md'));
 
     const references = createMarkdownReferences(workspace, noteA.uri, true);
-    expect(references.map(r => r.url)).toEqual([
+    expect(references.map(r => decodeURIComponent(r.url))).toEqual([
       '../dir2/page-b.md',
       '../dir3/page-c.md',
     ]);
   });
+
+  it('should encode special characters in links', () => {
+    const workspace = createTestWorkspace();
+    const noteA = createNoteFromMarkdown(
+      `Link to [[page: a]] and [[page %b%]] and [[page? c]] and [[[page] d]] and
+       [[page ^e^]] and [[page \`f\`]] and [[page {g}]] and [[page ~i]] and
+       [[page /j]]`
+    );
+    workspace
+      .set(noteA)
+      .set(createNoteFromMarkdown('Note containing :', '/dir1/page: a.md'))
+      .set(createNoteFromMarkdown('Note containing %', '/dir1/page %b%.md'))
+      .set(createNoteFromMarkdown('Note containing ?', '/dir1/page? c.md'))
+      .set(createNoteFromMarkdown('Note containing ]', '/dir1/[page] d.md'))
+      .set(createNoteFromMarkdown('Note containing ^', '/dir1/page ^e^.md'))
+      .set(createNoteFromMarkdown('Note containing `', '/dir1/page `f`.md'))
+      .set(
+        createNoteFromMarkdown('Note containing { and }', '/dir1/page {g}.md')
+      )
+      .set(createNoteFromMarkdown('Note containing ~', '/dir1/page ~i.md'));
+
+    const references = createMarkdownReferences(workspace, noteA.uri, true);
+    expect(references.map(r => decodeURIComponent(r.url))).toEqual([
+      '../dir1/page: a.md',
+      '../dir1/page %b%.md',
+      '../dir1/page? c.md',
+      '../dir1/[page] d.md',
+      '../dir1/page ^e^.md',
+      '../dir1/page `f`.md',
+      '../dir1/page {g}.md',
+      '../dir1/page ~i.md',
+    ]);
+  });
 });

packages/foam-vscode/src/core/services/markdown-provider.ts

@@ -137,6 +137,12 @@ export function createMarkdownReferences(
         relativeUri = relativeUri.changeExtension('*', '');
       }
 
+      // Extract base path and link name separately.
+      const basePath = relativeUri.path.split('/').slice(0, -1).join('/');
+      const linkName = relativeUri.path.split('/').pop();
+
+      const encodedURL = encodeURIComponent(linkName).replace(/%20/g, ' ');
+
       // [wikilink-text]: path/to/file.md "Page title"
       return {
         // embedded looks like ![[note-a]]
@@ -145,7 +151,7 @@ export function createMarkdownReferences(
           link.isEmbed ? 3 : 2,
           link.rawText.length - 2
         ),
-        url: relativeUri.path,
+        url: `${basePath ? basePath + '/' : ''}${encodedURL}`,
         title: target.title,
       };
     })

packages/foam-vscode/src/core/utils/core.ts

@@ -1,4 +1,4 @@
-import crypto from 'crypto';
+import sha1 from 'js-sha1';
 
 export function isNotNull<T>(value: T | null): value is T {
   return value != null;
@@ -20,5 +20,4 @@ export function isNumeric(value: string): boolean {
   return /-?\d+$/.test(value);
 }
 
-export const hash = (text: string) =>
-  crypto.createHash('sha1').update(text).digest('hex');
+export const hash = (text: string) => sha1.sha1(text);

packages/foam-vscode/src/core/utils/log.ts

@@ -89,3 +89,25 @@ export class Logger {
     Logger.defaultLogger = logger;
   }
 }
+
+export const withTiming = <T>(
+  fn: () => T,
+  onDidComplete: (elapsed: number) => void
+): T => {
+  const tsStart = Date.now();
+  const res = fn();
+  const tsEnd = Date.now();
+  onDidComplete(tsEnd - tsStart);
+  return res;
+};
+
+export const withTimingAsync = async <T>(
+  fn: () => Promise<T>,
+  onDidComplete: (elapsed: number) => void
+): Promise<T> => {
+  const tsStart = Date.now();
+  const res = await fn();
+  const tsEnd = Date.now();
+  onDidComplete(tsEnd - tsStart);
+  return res;
+};

packages/foam-vscode/src/core/utils/md.test.ts

@@ -1,67 +1,4 @@
-import {
-  isInFrontMatter,
-  isOnYAMLKeywordLine,
-  removeBrackets,
-  toTitleCase,
-} from './utils';
-
-describe('removeBrackets', () => {
-  it('removes the brackets', () => {
-    const input = 'hello world [[this-is-it]]';
-    const actual = removeBrackets(input);
-    const expected = 'hello world This Is It';
-    expect(actual).toEqual(expected);
-  });
-  it('removes the brackets and the md file extension', () => {
-    const input = 'hello world [[this-is-it.md]]';
-    const actual = removeBrackets(input);
-    const expected = 'hello world This Is It';
-    expect(actual).toEqual(expected);
-  });
-  it('removes the brackets and the mdx file extension', () => {
-    const input = 'hello world [[this-is-it.mdx]]';
-    const actual = removeBrackets(input);
-    const expected = 'hello world This Is It';
-    expect(actual).toEqual(expected);
-  });
-  it('removes the brackets and the markdown file extension', () => {
-    const input = 'hello world [[this-is-it.markdown]]';
-    const actual = removeBrackets(input);
-    const expected = 'hello world This Is It';
-    expect(actual).toEqual(expected);
-  });
-  it('removes the brackets even with numbers', () => {
-    const input = 'hello world [[2020-07-21.markdown]]';
-    const actual = removeBrackets(input);
-    const expected = 'hello world 2020 07 21';
-    expect(actual).toEqual(expected);
-  });
-  it('removes brackets for more than one word', () => {
-    const input =
-      'I am reading this as part of the [[book-club]] put on by [[egghead]] folks (Lauro).';
-    const actual = removeBrackets(input);
-    const expected =
-      'I am reading this as part of the Book Club put on by Egghead folks (Lauro).';
-    expect(actual).toEqual(expected);
-  });
-});
-
-describe('toTitleCase', () => {
-  it('title cases a word', () => {
-    const input =
-      'look at this really long sentence but I am calling it a word';
-    const actual = toTitleCase(input);
-    const expected =
-      'Look At This Really Long Sentence But I Am Calling It A Word';
-    expect(actual).toEqual(expected);
-  });
-  it('works on one word', () => {
-    const input = 'word';
-    const actual = toTitleCase(input);
-    const expected = 'Word';
-    expect(actual).toEqual(expected);
-  });
-});
+import { isInFrontMatter, isOnYAMLKeywordLine } from './md';
 
 describe('isInFrontMatter', () => {
   it('is true for started front matter', () => {
@@ -81,6 +18,12 @@ describe('isInFrontMatter', () => {
     const actual = isInFrontMatter(content, 1);
     expect(actual).toBeTruthy();
   });
+  it('is false for non valid front matter delimiter #1347', () => {
+    const content = '---\ntitle: A title\n-..\n\n\n---\ntest\n';
+    expect(isInFrontMatter(content, 1)).toBeTruthy();
+    expect(isInFrontMatter(content, 4)).toBeTruthy();
+    expect(isInFrontMatter(content, 6)).toBeFalsy();
+  });
   it('is false for outside completed front matter', () => {
     const content = '---\ntitle: A title\n---\ncontent\nmore content\n';
     const actual = isInFrontMatter(content, 3);

packages/foam-vscode/src/core/utils/md.ts

@@ -0,0 +1,70 @@
+import matter from 'gray-matter';
+
+export function getExcerpt(
+  markdown: string,
+  maxLines: number
+): { excerpt: string; lines: number } {
+  const OFFSET_LINES_LIMIT = 5;
+  const paragraphs = markdown.replace(/\r\n/g, '\n').split('\n\n');
+  const excerpt: string[] = [];
+  let lines = 0;
+  for (const paragraph of paragraphs) {
+    const n = paragraph.split('\n').length;
+    if (lines > maxLines || lines + n - maxLines > OFFSET_LINES_LIMIT) {
+      break;
+    }
+    excerpt.push(paragraph);
+    lines = lines + n + 1;
+  }
+  return { excerpt: excerpt.join('\n\n'), lines };
+}
+
+export function stripFrontMatter(markdown: string): string {
+  return matter(markdown).content.trim();
+}
+
+export function stripImages(markdown: string): string {
+  return markdown.replace(
+    /!\[(.*)\]\([-/\\.A-Za-z]*\)/gi,
+    '$1'.length ? '[Image: $1]' : ''
+  );
+}
+
+/**
+ * Returns if the given line is inside a front matter block
+ * @param content the string to check
+ * @param lineNumber the line number within the string, 0-based
+ * @returns true if the line is inside a frontmatter block in content
+ */
+export function isInFrontMatter(content: string, lineNumber: number): boolean {
+  const FIRST_DELIMITER_MATCH = /^---\s*?$/m;
+  const LAST_DELIMITER_MATCH = /^(-{3}|\.{3})/;
+
+  // if we're on the first line, we're not _yet_ in the front matter
+  if (lineNumber === 0) {
+    return false;
+  }
+
+  // look for --- at start, and a second --- or ... to end
+  if (content.match(FIRST_DELIMITER_MATCH) === null) {
+    return false;
+  }
+
+  const lines = content.split('\n');
+  lines.shift();
+  const endLineNumber = lines.findIndex(l => l.match(LAST_DELIMITER_MATCH));
+
+  return endLineNumber === -1 || endLineNumber >= lineNumber;
+}
+
+export function isOnYAMLKeywordLine(content: string, keyword: string): boolean {
+  const keywordMatch = /^\s*(\w+):/gm;
+
+  if (content.match(keywordMatch) === null) {
+    return false;
+  }
+
+  const matches = Array.from(content.matchAll(keywordMatch));
+  const lastMatch = matches[matches.length - 1];
+  return lastMatch[1] === keyword;
+}

packages/foam-vscode/src/dated-notes.ts

@@ -1,9 +1,8 @@
 import dateFormat from 'dateformat';
-import { focusNote } from './utils';
 import { URI } from './core/model/uri';
 import { NoteFactory } from './services/templates';
 import { getFoamVsCodeConfig } from './services/config';
-import { asAbsoluteWorkspaceUri } from './services/editor';
+import { asAbsoluteWorkspaceUri, focusNote } from './services/editor';
 
 /**
  * Open the daily note file.

packages/foam-vscode/src/extension.ts

@@ -17,7 +17,6 @@ import { VsCodeWatcher } from './services/watcher';
 import { createMarkdownParser } from './core/services/markdown-parser';
 import VsCodeBasedParserCache from './services/cache';
 import { createMatcherAndDataStore } from './services/editor';
-import { getFoamVsCodeConfig } from './services/config';
 
 export async function activate(context: ExtensionContext) {
   const logger = new VsCodeOutputLogger();
@@ -73,7 +72,9 @@ export async function activate(context: ExtensionContext) {
     );
 
     // Load the features
-    const resPromises = features.map(feature => feature(context, foamPromise));
+    const featuresPromises = features.map(feature =>
+      feature(context, foamPromise)
+    );
 
     const foam = await foamPromise;
     Logger.info(`Loaded ${foam.workspace.list().length} resources`);
@@ -102,14 +103,15 @@ export async function activate(context: ExtensionContext) {
       })
     );
 
-    const res = (await Promise.all(resPromises)).filter(r => r != null);
+    const feats = (await Promise.all(featuresPromises)).filter(r => r != null);
 
     return {
       extendMarkdownIt: (md: markdownit) => {
-        return res.reduce((acc: markdownit, r: any) => {
+        return feats.reduce((acc: markdownit, r: any) => {
           return r.extendMarkdownIt ? r.extendMarkdownIt(acc) : acc;
         }, md);
       },
+      foam,
     };
   } catch (e) {
     Logger.error('An error occurred while bootstrapping Foam', e);

packages/foam-vscode/src/features/commands/convert-links-format-in-note.ts

@@ -0,0 +1,188 @@
+import { commands, ExtensionContext, window, workspace, Uri } from 'vscode';
+import { Foam } from '../../core/model/foam';
+import { FoamWorkspace } from '../../core/model/workspace';
+import { fromVsCodeUri, toVsCodeRange } from '../../utils/vsc-utils';
+import { ResourceParser } from '../../core/model/note';
+import { IMatcher } from '../../core/services/datastore';
+import { convertLinkFormat } from '../../core/janitor';
+import { isMdEditor } from '../../services/editor';
+
+type LinkFormat = 'wikilink' | 'link';
+
+enum ConvertOption {
+  Wikilink2MDlink,
+  MDlink2Wikilink,
+}
+
+interface IConfig {
+  from: string;
+  to: string;
+}
+
+const Config: { [key in ConvertOption]: IConfig } = {
+  [ConvertOption.Wikilink2MDlink]: {
+    from: 'wikilink',
+    to: 'link',
+  },
+  [ConvertOption.MDlink2Wikilink]: {
+    from: 'link',
+    to: 'wikilink',
+  },
+};
+
+export default async function activate(
+  context: ExtensionContext,
+  foamPromise: Promise<Foam>
+) {
+  const foam = await foamPromise;
+
+  /* 
+  commands: 
+  foam-vscode.convert-link-style-inplace
+  foam-vscode.convert-link-style-incopy
+  */
+  context.subscriptions.push(
+    commands.registerCommand('foam-vscode.convert-link-style-inplace', () => {
+      return convertLinkAdapter(
+        foam.workspace,
+        foam.services.parser,
+        foam.services.matcher,
+        true
+      );
+    }),
+    commands.registerCommand('foam-vscode.convert-link-style-incopy', () => {
+      return convertLinkAdapter(
+        foam.workspace,
+        foam.services.parser,
+        foam.services.matcher,
+        false
+      );
+    })
+  );
+}
+
+async function convertLinkAdapter(
+  fWorkspace: FoamWorkspace,
+  fParser: ResourceParser,
+  fMatcher: IMatcher,
+  isInPlace: boolean
+) {
+  const convertOption = await pickConvertStrategy();
+  if (!convertOption) {
+    window.showInformationMessage('Convert canceled');
+    return;
+  }
+
+  if (isInPlace) {
+    await convertLinkInPlace(fWorkspace, fParser, fMatcher, convertOption);
+  } else {
+    await convertLinkInCopy(fWorkspace, fParser, fMatcher, convertOption);
+  }
+}
+
+async function pickConvertStrategy(): Promise<IConfig | undefined> {
+  const options = {
+    'to wikilink': ConvertOption.MDlink2Wikilink,
+    'to markdown link': ConvertOption.Wikilink2MDlink,
+  };
+  return window.showQuickPick(Object.keys(options)).then(name => {
+    if (name) {
+      return Config[options[name]];
+    } else {
+      return undefined;
+    }
+  });
+}
+
+/**
+ * convert links based on its workspace and the note containing it.
+ * Changes happen in-place
+ * @param fWorkspace
+ * @param fParser
+ * @param fMatcher
+ * @param convertOption
+ * @returns void
+ */
+async function convertLinkInPlace(
+  fWorkspace: FoamWorkspace,
+  fParser: ResourceParser,
+  fMatcher: IMatcher,
+  convertOption: IConfig
+) {
+  const editor = window.activeTextEditor;
+  const doc = editor.document;
+
+  if (!isMdEditor(editor) || !fMatcher.isMatch(fromVsCodeUri(doc.uri))) {
+    return;
+  }
+  // const eol = getEditorEOL();
+  let text = doc.getText();
+
+  const resource = fParser.parse(fromVsCodeUri(doc.uri), text);
+
+  const textReplaceArr = resource.links
+    .filter(link => link.type === convertOption.from)
+    .map(link =>
+      convertLinkFormat(
+        link,
+        convertOption.to as LinkFormat,
+        fWorkspace,
+        resource
+      )
+    )
+    /* transform .range property into vscode range */
+    .map(linkReplace => ({
+      ...linkReplace,
+      range: toVsCodeRange(linkReplace.range),
+    }));
+
+  /* reorder the array such that the later range comes first */
+  textReplaceArr.sort((a, b) => b.range.start.compareTo(a.range.start));
+
+  await editor.edit(editorBuilder => {
+    textReplaceArr.forEach(edit => {
+      editorBuilder.replace(edit.range, edit.newText);
+    });
+  });
+}
+
+/**
+ * convert links based on its workspace and the note containing it.
+ * Changes happen in a copy
+ * 1. prepare a copy file, and makt it the activeTextEditor
+ * 2. call to convertLinkInPlace
+ * @param fWorkspace
+ * @param fParser
+ * @param fMatcher
+ * @param convertOption
+ * @returns void
+ */
+async function convertLinkInCopy(
+  fWorkspace: FoamWorkspace,
+  fParser: ResourceParser,
+  fMatcher: IMatcher,
+  convertOption: IConfig
+) {
+  const editor = window.activeTextEditor;
+  const doc = editor.document;
+
+  if (!isMdEditor(editor) || !fMatcher.isMatch(fromVsCodeUri(doc.uri))) {
+    return;
+  }
+  // const eol = getEditorEOL();
+  let text = doc.getText();
+
+  const resource = fParser.parse(fromVsCodeUri(doc.uri), text);
+  const basePath = doc.uri.path.split('/').slice(0, -1).join('/');
+
+  const fileUri = Uri.file(
+    `${
+      basePath ? basePath + '/' : ''
+    }${resource.uri.getName()}.copy${resource.uri.getExtension()}`
+  );
+  const encoder = new TextEncoder();
+  await workspace.fs.writeFile(fileUri, encoder.encode(text));
+  await window.showTextDocument(fileUri);
+
+  await convertLinkInPlace(fWorkspace, fParser, fMatcher, convertOption);
+}

packages/foam-vscode/src/features/commands/copy-without-brackets.spec.ts

@@ -1,5 +1,6 @@
 import { env, Position, Selection, commands } from 'vscode';
 import { createFile, showInEditor } from '../../test/test-utils-vscode';
+import { removeBrackets, toTitleCase } from './copy-without-brackets';
 
 describe('copy-without-brackets command', () => {
   it('should get the input from the active editor selection', async () => {
@@ -11,3 +12,61 @@ describe('copy-without-brackets command', () => {
     expect(value).toEqual('This is my Test Content.');
   });
 });
+
+describe('removeBrackets', () => {
+  it('removes the brackets', () => {
+    const input = 'hello world [[this-is-it]]';
+    const actual = removeBrackets(input);
+    const expected = 'hello world This Is It';
+    expect(actual).toEqual(expected);
+  });
+  it('removes the brackets and the md file extension', () => {
+    const input = 'hello world [[this-is-it.md]]';
+    const actual = removeBrackets(input);
+    const expected = 'hello world This Is It';
+    expect(actual).toEqual(expected);
+  });
+  it('removes the brackets and the mdx file extension', () => {
+    const input = 'hello world [[this-is-it.mdx]]';
+    const actual = removeBrackets(input);
+    const expected = 'hello world This Is It';
+    expect(actual).toEqual(expected);
+  });
+  it('removes the brackets and the markdown file extension', () => {
+    const input = 'hello world [[this-is-it.markdown]]';
+    const actual = removeBrackets(input);
+    const expected = 'hello world This Is It';
+    expect(actual).toEqual(expected);
+  });
+  it('removes the brackets even with numbers', () => {
+    const input = 'hello world [[2020-07-21.markdown]]';
+    const actual = removeBrackets(input);
+    const expected = 'hello world 2020 07 21';
+    expect(actual).toEqual(expected);
+  });
+  it('removes brackets for more than one word', () => {
+    const input =
+      'I am reading this as part of the [[book-club]] put on by [[egghead]] folks (Lauro).';
+    const actual = removeBrackets(input);
+    const expected =
+      'I am reading this as part of the Book Club put on by Egghead folks (Lauro).';
+    expect(actual).toEqual(expected);
+  });
+});
+
+describe('toTitleCase', () => {
+  it('title cases a word', () => {
+    const input =
+      'look at this really long sentence but I am calling it a word';
+    const actual = toTitleCase(input);
+    const expected =
+      'Look At This Really Long Sentence But I Am Calling It A Word';
+    expect(actual).toEqual(expected);
+  });
+  it('works on one word', () => {
+    const input = 'word';
+    const actual = toTitleCase(input);
+    const expected = 'Word';
+    expect(actual).toEqual(expected);
+  });
+});

packages/foam-vscode/src/features/commands/copy-without-brackets.ts

@@ -1,5 +1,4 @@
 import { window, env, ExtensionContext, commands } from 'vscode';
-import { removeBrackets } from '../../utils';
 
 export default async function activate(context: ExtensionContext) {
   context.subscriptions.push(
@@ -31,3 +30,46 @@ async function copyWithoutBrackets() {
     window.showInformationMessage('Successfully copied to clipboard!');
   }
 }
+
+/**
+ * Used for the "Copy to Clipboard Without Brackets" command
+ *
+ */
+export function removeBrackets(s: string): string {
+  // take in the string, split on space
+  const stringSplitBySpace = s.split(' ');
+
+  // loop through words
+  const modifiedWords = stringSplitBySpace.map(currentWord => {
+    if (currentWord.includes('[[')) {
+      // all of these transformations will turn this "[[you-are-awesome]]"
+      // to this "you are awesome"
+      let word = currentWord.replace(/(\[\[)/g, '');
+      word = word.replace(/(\]\])/g, '');
+      word = word.replace(/(.mdx|.md|.markdown)/g, '');
+      word = word.replace(/[-]/g, ' ');
+
+      // then we titlecase the word so "you are awesome"
+      // becomes "You Are Awesome"
+      const titleCasedWord = toTitleCase(word);
+
+      return titleCasedWord;
+    }
+
+    return currentWord;
+  });
+
+  return modifiedWords.join(' ');
+}
+
+/**
+ * Takes in a string and returns it titlecased
+ *
+ * @example toTitleCase("hello world") -> "Hello World"
+ */
+export function toTitleCase(word: string): string {
+  return word
+    .split(' ')
+    .map(word => word[0].toUpperCase() + word.substring(1))
+    .join(' ');
+}

packages/foam-vscode/src/features/commands/create-note.spec.ts

@@ -10,7 +10,11 @@ import {
   showInEditor,
 } from '../../test/test-utils-vscode';
 import { fromVsCodeUri } from '../../utils/vsc-utils';
-import { CREATE_NOTE_COMMAND } from './create-note';
+import { CREATE_NOTE_COMMAND, createNote } from './create-note';
+import { Location } from '../../core/model/location';
+import { Range } from '../../core/model/range';
+import { ResourceLink } from '../../core/model/note';
+import { createMarkdownParser } from '../../core/services/markdown-parser';
 
 describe('create-note command', () => {
   afterEach(() => {
@@ -194,8 +198,14 @@ describe('factories', () => {
   describe('forPlaceholder', () => {
     it('adds the .md extension to notes created for placeholders', async () => {
       await closeEditors();
+      const link: ResourceLink = {
+        type: 'wikilink',
+        rawText: '[[my-placeholder]]',
+        range: Range.create(0, 0, 0, 0),
+        isEmbed: false,
+      };
       const command = CREATE_NOTE_COMMAND.forPlaceholder(
-        'my-placeholder',
+        Location.forObjectWithRange(URI.file(''), link),
         '.md'
       );
       await commands.executeCommand(command.name, command.params);
@@ -204,5 +214,41 @@ describe('factories', () => {
       expect(doc.uri.path).toMatch(/my-placeholder.md$/);
       expect(doc.getText()).toMatch(/^# my-placeholder/);
     });
+
+    it('replaces the original placeholder based on the new note identifier (#1327)', async () => {
+      await closeEditors();
+      const templateA = await createFile(
+        `---
+foam_template:
+  name: 'Example Template'
+  description: 'An example for reproducing a bug'
+  filepath: '$FOAM_SLUG-world.md'
+---`,
+        ['.foam', 'templates', 'template-a.md']
+      );
+
+      const noteA = await createFile(`this is my [[hello]]`);
+
+      const parser = createMarkdownParser();
+      const res = parser.parse(noteA.uri, noteA.content);
+
+      const command = CREATE_NOTE_COMMAND.forPlaceholder(
+        Location.forObjectWithRange(noteA.uri, res.links[0]),
+        '.md',
+        {
+          templatePath: templateA.uri.path,
+        }
+      );
+      const results: Awaited<ReturnType<typeof createNote>> =
+        await commands.executeCommand(command.name, command.params);
+      expect(results.didCreateFile).toBeTruthy();
+      expect(results.uri.path.endsWith('hello-world.md')).toBeTruthy();
+
+      const newNoteDoc = window.activeTextEditor.document;
+      expect(newNoteDoc.uri.path).toMatch(/hello-world.md$/);
+
+      const { doc } = await showInEditor(noteA.uri);
+      expect(doc.getText()).toEqual(`this is my [[hello-world]]`);
+    });
   });
 });

packages/foam-vscode/src/features/commands/create-note.ts

@@ -10,10 +10,21 @@ import { Resolver } from '../../services/variable-resolver';
 import { asAbsoluteWorkspaceUri, fileExists } from '../../services/editor';
 import { isSome } from '../../core/utils';
 import { CommandDescriptor } from '../../utils/commands';
+import { Foam } from '../../core/model/foam';
+import { Location } from '../../core/model/location';
+import { MarkdownLink } from '../../core/services/markdown-link';
+import { ResourceLink } from '../../core/model/note';
+import { toVsCodeRange, toVsCodeUri } from '../../utils/vsc-utils';
 
-export default async function activate(context: vscode.ExtensionContext) {
+export default async function activate(
+  context: vscode.ExtensionContext,
+  foamPromise: Promise<Foam>
+) {
+  const foam = await foamPromise;
   context.subscriptions.push(
-    vscode.commands.registerCommand(CREATE_NOTE_COMMAND.command, createNote)
+    vscode.commands.registerCommand(CREATE_NOTE_COMMAND.command, args =>
+      createNote(args, foam)
+    )
   );
 }
 
@@ -48,6 +59,11 @@ interface CreateNoteArgs {
    * The title of the note (translates into the FOAM_TITLE variable)
    */
   title?: string;
+  /**
+   * The source link that triggered the creation of the note.
+   * It will be updated with the appropriate identifier to the note, if necessary.
+   */
+  sourceLink?: Location<ResourceLink>;
   /**
    * What to do in case the target file already exists
    */
@@ -66,7 +82,7 @@ const DEFAULT_NEW_NOTE_TEXT = `# \${FOAM_TITLE}
 
 \${FOAM_SELECTED_TEXT}`;
 
-async function createNote(args: CreateNoteArgs) {
+export async function createNote(args: CreateNoteArgs, foam: Foam) {
   args = args ?? {};
   const date = isSome(args.date) ? new Date(Date.parse(args.date)) : new Date();
   const resolver = new Resolver(
@@ -92,23 +108,39 @@ async function createNote(args: CreateNoteArgs) {
       : getDefaultTemplateUri();
   }
 
-  if (await fileExists(templateUri)) {
-    return NoteFactory.createFromTemplate(
-      templateUri,
-      resolver,
-      noteUri,
-      text,
-      args.onFileExists
-    );
-  } else {
-    return NoteFactory.createNote(
-      noteUri ?? (await getPathFromTitle(resolver)),
-      text,
-      resolver,
-      args.onFileExists,
-      args.onRelativeNotePath
-    );
+  const createdNote = (await fileExists(templateUri))
+    ? await NoteFactory.createFromTemplate(
+        templateUri,
+        resolver,
+        noteUri,
+        text,
+        args.onFileExists
+      )
+    : await NoteFactory.createNote(
+        noteUri ?? (await getPathFromTitle(resolver)),
+        text,
+        resolver,
+        args.onFileExists,
+        args.onRelativeNotePath
+      );
+
+  if (args.sourceLink) {
+    const identifier = foam.workspace.getIdentifier(createdNote.uri);
+    const edit = MarkdownLink.createUpdateLinkEdit(args.sourceLink.data, {
+      target: identifier,
+    });
+    if (edit.newText !== args.sourceLink.data.rawText) {
+      const updateLink = new vscode.WorkspaceEdit();
+      const uri = toVsCodeUri(args.sourceLink.uri);
+      updateLink.replace(
+        uri,
+        toVsCodeRange(args.sourceLink.range),
+        edit.newText
+      );
+      await vscode.workspace.applyEdit(updateLink);
+    }
   }
+  return createdNote;
 }
 
 export const CREATE_NOTE_COMMAND = {
@@ -123,12 +155,12 @@ export const CREATE_NOTE_COMMAND = {
    * @returns the command descriptor
    */
   forPlaceholder: (
-    placeholder: string,
+    sourceLink: Location<ResourceLink>,
     defaultExtension: string,
     extra: Partial<CreateNoteArgs> = {}
   ): CommandDescriptor<CreateNoteArgs> => {
     const endsWithDefaultExtension = new RegExp(defaultExtension + '$');
-
+    const { target: placeholder } = MarkdownLink.analyzeLink(sourceLink.data);
     const title = placeholder.endsWith(defaultExtension)
       ? placeholder.replace(endsWithDefaultExtension, '')
       : placeholder;
@@ -140,6 +172,7 @@ export const CREATE_NOTE_COMMAND = {
       params: {
         title,
         notePath,
+        sourceLink,
         ...extra,
       },
     };

packages/foam-vscode/src/features/commands/index.ts

@@ -10,3 +10,4 @@ export { default as openResource } from './open-resource';
 export { default as updateGraphCommand } from './update-graph';
 export { default as updateWikilinksCommand } from './update-wikilinks';
 export { default as createNote } from './create-note';
+export { default as generateStandaloneNote } from './convert-links-format-in-note';

packages/foam-vscode/src/features/commands/janitor.ts

@@ -5,18 +5,18 @@ import {
   commands,
   ProgressLocation,
 } from 'vscode';
-import { getWikilinkDefinitionSetting } from '../../settings';
+import detectNewline from 'detect-newline';
+import { Foam } from '../../core/model/foam';
+import { Resource } from '../../core/model/note';
+import { generateHeading, generateLinkReferences } from '../../core/janitor';
+import { Range } from '../../core/model/range';
+import { TextEdit } from '../../core/services/text-edit';
 import {
   toVsCodePosition,
   toVsCodeRange,
   toVsCodeUri,
 } from '../../utils/vsc-utils';
-import { Foam } from '../../core/model/foam';
-import { Resource } from '../../core/model/note';
-import { generateHeading, generateLinkReferences } from '../../core/janitor';
-import { Range } from '../../core/model/range';
-import detectNewline from 'detect-newline';
-import { TextEdit } from '../../core/services/text-edit';
+import { getWikilinkDefinitionSetting } from './update-wikilinks';
 
 export default async function activate(
   context: ExtensionContext,

packages/foam-vscode/src/features/commands/open-random-note.ts

@@ -1,6 +1,6 @@
 import { ExtensionContext, commands, window } from 'vscode';
-import { focusNote } from '../../utils';
 import { Foam } from '../../core/model/foam';
+import { focusNote } from '../../services/editor';
 
 export default async function activate(
   context: ExtensionContext,

packages/foam-vscode/src/features/commands/update-wikilinks.ts

@@ -11,7 +11,7 @@ import {
   workspace,
   Position,
 } from 'vscode';
-import { isMdEditor, mdDocSelector } from '../../utils';
+import { isMdEditor, mdDocSelector } from '../../services/editor';
 import { Foam } from '../../core/model/foam';
 import { FoamWorkspace } from '../../core/model/workspace';
 import {
@@ -22,7 +22,6 @@ import {
 import { fromVsCodeUri, toVsCodeRange } from '../../utils/vsc-utils';
 import { getEditorEOL } from '../../services/editor';
 import { ResourceParser } from '../../core/model/note';
-import { getWikilinkDefinitionSetting } from '../../settings';
 import { IMatcher } from '../../core/services/datastore';
 
 export default async function activate(
@@ -58,6 +57,15 @@ export default async function activate(
   );
 }
 
+export function getWikilinkDefinitionSetting():
+  | 'withExtensions'
+  | 'withoutExtensions'
+  | 'off' {
+  return workspace
+    .getConfiguration('foam.edit')
+    .get('linkReferenceDefinitions', 'withoutExtensions');
+}
+
 async function updateWikilinkDefinitions(
   fWorkspace: FoamWorkspace,
   fParser: ResourceParser,

packages/foam-vscode/src/features/hover-provider.ts

@@ -1,6 +1,5 @@
 import { uniqWith } from 'lodash';
 import * as vscode from 'vscode';
-import { getNoteTooltip, mdDocSelector, isSome } from '../utils';
 import { fromVsCodeUri, toVsCodeRange } from '../utils/vsc-utils';
 import {
   ConfigurationMonitor,
@@ -14,6 +13,9 @@ import { FoamGraph } from '../core/model/graph';
 import { OPEN_COMMAND } from './commands/open-resource';
 import { CREATE_NOTE_COMMAND } from './commands/create-note';
 import { commandAsURI } from '../utils/commands';
+import { Location } from '../core/model/location';
+import { getNoteTooltip, mdDocSelector } from '../services/editor';
+import { isSome } from '../core/utils';
 
 export const CONFIG_KEY = 'links.hover.enable';
 
@@ -107,7 +109,7 @@ export class HoverProvider implements vscode.HoverProvider {
     }
 
     const command = CREATE_NOTE_COMMAND.forPlaceholder(
-      targetUri.path,
+      Location.forObjectWithRange(documentUri, targetLink),
       this.workspace.defaultExtension,
       {
         askForTemplate: true,

packages/foam-vscode/src/features/link-completion.ts

@@ -5,8 +5,8 @@ import { Resource } from '../core/model/note';
 import { URI } from '../core/model/uri';
 import { FoamWorkspace } from '../core/model/workspace';
 import { getFoamVsCodeConfig } from '../services/config';
-import { getNoteTooltip, mdDocSelector } from '../utils';
 import { fromVsCodeUri, toVsCodeUri } from '../utils/vsc-utils';
+import { getNoteTooltip, mdDocSelector } from '../services/editor';
 
 export const aliasCommitCharacters = ['#'];
 export const linkCommitCharacters = ['#', '|'];

packages/foam-vscode/src/features/navigation-provider.spec.ts

@@ -12,6 +12,7 @@ import { createMarkdownParser } from '../core/services/markdown-parser';
 import { FoamGraph } from '../core/model/graph';
 import { commandAsURI } from '../utils/commands';
 import { CREATE_NOTE_COMMAND } from './commands/create-note';
+import { Location } from '../core/model/location';
 
 describe('Document navigation', () => {
   const parser = createMarkdownParser([]);
@@ -71,9 +72,8 @@ describe('Document navigation', () => {
 
     it('should create links for placeholders', async () => {
       const fileA = await createFile(`this is a link to [[a placeholder]].`);
-      const ws = createTestWorkspace().set(
-        parser.parse(fileA.uri, fileA.content)
-      );
+      const noteA = parser.parse(fileA.uri, fileA.content);
+      const ws = createTestWorkspace().set(noteA);
       const graph = FoamGraph.fromWorkspace(ws);
 
       const { doc } = await showInEditor(fileA.uri);
@@ -83,9 +83,13 @@ describe('Document navigation', () => {
       expect(links.length).toEqual(1);
       expect(links[0].target).toEqual(
         commandAsURI(
-          CREATE_NOTE_COMMAND.forPlaceholder('a placeholder', '.md', {
-            onFileExists: 'open',
-          })
+          CREATE_NOTE_COMMAND.forPlaceholder(
+            Location.forObjectWithRange(noteA.uri, noteA.links[0]),
+            '.md',
+            {
+              onFileExists: 'open',
+            }
+          )
         )
       );
       expect(links[0].range).toEqual(new vscode.Range(0, 20, 0, 33));
@@ -227,6 +231,10 @@ describe('Document navigation', () => {
         doc,
         new vscode.Position(0, 26)
       );
+
+      // Make sure the references are sorted by position, so we match the right expectation
+      refs.sort((a, b) => a.range.start.character - b.range.start.character);
+
       expect(refs.length).toEqual(2);
       expect(refs[0]).toEqual({
         uri: toVsCodeUri(fileB.uri),

packages/foam-vscode/src/features/navigation-provider.ts

@@ -1,5 +1,4 @@
 import * as vscode from 'vscode';
-import { mdDocSelector } from '../utils';
 import { toVsCodeRange, toVsCodeUri, fromVsCodeUri } from '../utils/vsc-utils';
 import { Foam } from '../core/model/foam';
 import { FoamWorkspace } from '../core/model/workspace';
@@ -10,6 +9,8 @@ import { FoamGraph } from '../core/model/graph';
 import { Position } from '../core/model/position';
 import { CREATE_NOTE_COMMAND } from './commands/create-note';
 import { commandAsURI } from '../utils/commands';
+import { Location } from '../core/model/location';
+import { mdDocSelector } from '../services/editor';
 
 export default async function activate(
   context: vscode.ExtensionContext,
@@ -146,10 +147,8 @@ export class NavigationProvider
   public provideDocumentLinks(
     document: vscode.TextDocument
   ): vscode.DocumentLink[] {
-    const resource = this.parser.parse(
-      fromVsCodeUri(document.uri),
-      document.getText()
-    );
+    const documentUri = fromVsCodeUri(document.uri);
+    const resource = this.parser.parse(documentUri, document.getText());
 
     const targets: { link: ResourceLink; target: URI }[] = resource.links.map(
       link => ({
@@ -162,7 +161,7 @@ export class NavigationProvider
       .filter(o => o.target.isPlaceholder()) // links to resources are managed by the definition provider
       .map(o => {
         const command = CREATE_NOTE_COMMAND.forPlaceholder(
-          o.target.path,
+          Location.forObjectWithRange(documentUri, o.link),
           this.workspace.defaultExtension,
           {
             onFileExists: 'open',

packages/foam-vscode/src/features/panels/connections.ts

@@ -1,6 +1,5 @@
 import * as vscode from 'vscode';
 import { URI } from '../../core/model/uri';
-import { isNone } from '../../utils';
 import { Foam } from '../../core/model/foam';
 import { FoamWorkspace } from '../../core/model/workspace';
 import { Connection, FoamGraph } from '../../core/model/graph';
@@ -14,6 +13,7 @@ import {
   createConnectionItemsForResource,
 } from './utils/tree-view-utils';
 import { BaseTreeProvider } from './utils/base-tree-provider';
+import { isNone } from '../../core/utils';
 
 export default async function activate(
   context: vscode.ExtensionContext,
@@ -30,7 +30,6 @@ export default async function activate(
     treeDataProvider: provider,
     showCollapseAll: true,
   });
-  const baseTitle = treeView.title;
 
   const updateTreeView = async () => {
     provider.target = vscode.window.activeTextEditor
@@ -53,12 +52,7 @@ export default async function activate(
 }
 
 export class ConnectionsTreeDataProvider extends BaseTreeProvider<vscode.TreeItem> {
-  public show = new ContextMemento<'all links' | 'backlinks' | 'forward links'>(
-    this.state,
-    `foam-vscode.views.connections.show`,
-    'all links',
-    true
-  );
+  public show: ContextMemento<'all links' | 'backlinks' | 'forward links'>;
   public target?: URI = undefined;
   public nValues = 0;
   private connectionItems: ResourceRangeTreeItem[] = [];
@@ -70,6 +64,12 @@ export class ConnectionsTreeDataProvider extends BaseTreeProvider<vscode.TreeIte
     registerCommands = true // for testing. don't love it, but will do for now
   ) {
     super();
+    this.show = new ContextMemento<'all links' | 'backlinks' | 'forward links'>(
+      this.state,
+      `foam-vscode.views.connections.show`,
+      'all links',
+      true
+    );
     if (!registerCommands) {
       return;
     }

packages/foam-vscode/src/features/panels/dataviz.ts

@@ -1,10 +1,8 @@
 import * as vscode from 'vscode';
-import { TextDecoder } from 'util';
-import { getGraphStyle, getTitleMaxLength } from '../../settings';
-import { isSome } from '../../utils';
 import { Foam } from '../../core/model/foam';
 import { Logger } from '../../core/utils/log';
 import { fromVsCodeUri } from '../../utils/vsc-utils';
+import { isSome } from '../../core/utils';
 
 export default async function activate(
   context: vscode.ExtensionContext,
@@ -104,7 +102,9 @@ function generateGraphData(foam: Foam) {
 }
 
 function cutTitle(title: string): string {
-  const maxLen = getTitleMaxLength();
+  const maxLen = vscode.workspace
+    .getConfiguration('foam.graph')
+    .get('titleMaxLength', 24);
   if (maxLen > 0 && title.length > maxLen) {
     return title.substring(0, maxLen).concat('...');
   }
@@ -166,28 +166,37 @@ async function getWebviewContent(
   context: vscode.ExtensionContext,
   panel: vscode.WebviewPanel
 ) {
-  const datavizPath = vscode.Uri.joinPath(
-    vscode.Uri.file(context.extensionPath),
+  const datavizUri = vscode.Uri.joinPath(
+    context.extensionUri,
     'static',
     'dataviz'
   );
-
   const getWebviewUri = (fileName: string) =>
-    panel.webview.asWebviewUri(vscode.Uri.joinPath(datavizPath, fileName));
+    panel.webview.asWebviewUri(vscode.Uri.joinPath(datavizUri, fileName));
 
-  const indexHtml = await vscode.workspace.fs.readFile(
-    vscode.Uri.joinPath(datavizPath, 'index.html')
-  );
+  const indexHtml =
+    vscode.env.uiKind === vscode.UIKind.Desktop
+      ? new TextDecoder('utf-8').decode(
+          await vscode.workspace.fs.readFile(
+            vscode.Uri.joinPath(datavizUri, 'index.html')
+          )
+        )
+      : await fetch(getWebviewUri('index.html').toString()).then(r => r.text());
 
   // Replace the script paths with the appropriate webview URI.
-  const filled = new TextDecoder('utf-8')
-    .decode(indexHtml)
-    .replace(/data-replace (src|href)="[^"]+"/g, match => {
+  const filled = indexHtml.replace(
+    /data-replace (src|href)="[^"]+"/g,
+    match => {
       const i = match.indexOf(' ');
       const j = match.indexOf('=');
       const uri = getWebviewUri(match.slice(j + 2, -1).trim());
       return match.slice(i + 1, j) + '="' + uri.toString() + '"';
-    });
+    }
+  );
 
   return filled;
 }
+
+function getGraphStyle(): object {
+  return vscode.workspace.getConfiguration('foam.graph').get('style');
+}

packages/foam-vscode/src/features/panels/notes-explorer.ts

@@ -91,11 +91,7 @@ export class NotesProvider extends FolderTreeProvider<
   NotesTreeItems,
   Resource
 > {
-  public show = new ContextMemento<'all' | 'notes-only'>(
-    this.state,
-    `foam-vscode.views.notes-explorer.show`,
-    'all'
-  );
+  public show: ContextMemento<'all' | 'notes-only'>;
 
   constructor(
     private workspace: FoamWorkspace,
@@ -103,6 +99,12 @@ export class NotesProvider extends FolderTreeProvider<
     private state: vscode.Memento
   ) {
     super();
+    this.show = new ContextMemento<'all' | 'notes-only'>(
+      this.state,
+      `foam-vscode.views.notes-explorer.show`,
+      'all'
+    );
+
     this.disposables.push(
       vscode.commands.registerCommand(
         `foam-vscode.views.notes-explorer.show:all`,

packages/foam-vscode/src/features/panels/orphans.ts

@@ -1,8 +1,11 @@
 import * as vscode from 'vscode';
 import { Foam } from '../../core/model/foam';
 import { createMatcherAndDataStore } from '../../services/editor';
-import { getAttachmentsExtensions, getOrphansConfig } from '../../settings';
-import { GroupedResourcesTreeDataProvider } from './utils/grouped-resources-tree-data-provider';
+import { getAttachmentsExtensions } from '../../settings';
+import {
+  GroupedResourcesConfig,
+  GroupedResourcesTreeDataProvider,
+} from './utils/grouped-resources-tree-data-provider';
 import { ResourceTreeItem, UriTreeItem } from './utils/tree-view-utils';
 import { IMatcher } from '../../core/services/datastore';
 import { FoamWorkspace } from '../../core/model/workspace';
@@ -46,6 +49,13 @@ export default async function activate(
   );
 }
 
+/** Retrieve the orphans configuration */
+export function getOrphansConfig(): GroupedResourcesConfig {
+  const orphansConfig = vscode.workspace.getConfiguration('foam.orphans');
+  const exclude: string[] = orphansConfig.get('exclude');
+  return { exclude };
+}
+
 export class OrphanTreeView extends GroupedResourcesTreeDataProvider {
   constructor(
     state: vscode.Memento,

packages/foam-vscode/src/features/panels/placeholders.ts

@@ -1,8 +1,10 @@
 import * as vscode from 'vscode';
 import { Foam } from '../../core/model/foam';
 import { createMatcherAndDataStore } from '../../services/editor';
-import { getPlaceholdersConfig } from '../../settings';
-import { GroupedResourcesTreeDataProvider } from './utils/grouped-resources-tree-data-provider';
+import {
+  GroupedResourcesConfig,
+  GroupedResourcesTreeDataProvider,
+} from './utils/grouped-resources-tree-data-provider';
 import {
   UriTreeItem,
   createBacklinkItemsForResource,
@@ -16,6 +18,13 @@ import { URI } from '../../core/model/uri';
 import { FoamWorkspace } from '../../core/model/workspace';
 import { FolderTreeItem } from './utils/folder-tree-provider';
 
+/** Retrieve the placeholders configuration */
+export function getPlaceholdersConfig(): GroupedResourcesConfig {
+  const placeholderCfg = vscode.workspace.getConfiguration('foam.placeholders');
+  const exclude: string[] = placeholderCfg.get('exclude');
+  return { exclude };
+}
+
 export default async function activate(
   context: vscode.ExtensionContext,
   foamPromise: Promise<Foam>

packages/foam-vscode/src/features/panels/utils/grouped-resources-tree-data-provider.ts

@@ -10,6 +10,10 @@ import {
   Folder,
 } from './folder-tree-provider';
 
+export interface GroupedResourcesConfig {
+  exclude: string[];
+}
+
 type GroupedResourceTreeItem = UriTreeItem | FolderTreeItem<URI>;
 
 /**
@@ -31,11 +35,7 @@ export abstract class GroupedResourcesTreeDataProvider extends FolderTreeProvide
   GroupedResourceTreeItem,
   URI
 > {
-  public groupBy = new ContextMemento<'off' | 'folder'>(
-    this.state,
-    `foam-vscode.views.${this.providerId}.group-by`,
-    'folder'
-  );
+  public groupBy: ContextMemento<'off' | 'folder'>;
 
   /**
    * Creates an instance of GroupedResourcesTreeDataProvider.
@@ -57,6 +57,12 @@ export abstract class GroupedResourcesTreeDataProvider extends FolderTreeProvide
     private matcher: IMatcher
   ) {
     super();
+    this.groupBy = new ContextMemento<'off' | 'folder'>(
+      this.state,
+      `foam-vscode.views.${this.providerId}.group-by`,
+      'folder'
+    );
+
     this.disposables.push(
       vscode.commands.registerCommand(
         `foam-vscode.views.${this.providerId}.group-by:folder`,

packages/foam-vscode/src/features/panels/utils/tree-view-utils.ts

@@ -5,11 +5,11 @@ import { toVsCodeUri } from '../../../utils/vsc-utils';
 import { Range } from '../../../core/model/range';
 import { URI } from '../../../core/model/uri';
 import { FoamWorkspace } from '../../../core/model/workspace';
-import { getNoteTooltip } from '../../../utils';
 import { isSome } from '../../../core/utils';
 import { getBlockFor } from '../../../core/services/markdown-parser';
 import { Connection, FoamGraph } from '../../../core/model/graph';
 import { Logger } from '../../../core/utils/log';
+import { getNoteTooltip } from '../../../services/editor';
 
 export class BaseTreeItem extends vscode.TreeItem {
   resolveTreeItem(): Promise<vscode.TreeItem> {

packages/foam-vscode/src/features/preview/tag-highlight.ts

@@ -1,9 +1,9 @@
 /*global markdownit:readonly*/
 
 import markdownItRegex from 'markdown-it-regex';
-import { isNone } from '../../utils';
 import { FoamWorkspace } from '../../core/model/workspace';
 import { Logger } from '../../core/utils/log';
+import { isNone } from '../../core/utils';
 
 export const markdownItFoamTags = (
   md: markdownit,

packages/foam-vscode/src/features/preview/wikilink-embed-web-extension.ts

@@ -0,0 +1,27 @@
+/*global markdownit:readonly*/
+
+import markdownItRegex from 'markdown-it-regex';
+import { ResourceParser } from '../../core/model/note';
+import { FoamWorkspace } from '../../core/model/workspace';
+
+export const WIKILINK_EMBED_REGEX =
+  /((?:(?:full|content)-(?:inline|card)|full|content|inline|card)?!\[\[[^[\]]+?\]\])/;
+
+export const markdownItWikilinkEmbed = (
+  md: markdownit,
+  workspace: FoamWorkspace,
+  parser: ResourceParser
+) => {
+  return md.use(markdownItRegex, {
+    name: 'embed-wikilinks',
+    regex: WIKILINK_EMBED_REGEX,
+    replace: (wikilinkItem: string) => {
+      return `
+<div style="padding: 0.25em; margin: 1.5em 0; text-align: center; border: 1px solid var(--vscode-editorLineNumber-foreground);">
+Embeds are not supported in web extension: <br/> ${wikilinkItem}
+</div>`;
+    },
+  });
+};
+
+export default markdownItWikilinkEmbed;

packages/foam-vscode/src/features/preview/wikilink-embed.ts

@@ -4,7 +4,6 @@
 import { readFileSync } from 'fs';
 import { workspace as vsWorkspace } from 'vscode';
 import markdownItRegex from 'markdown-it-regex';
-import { isSome, isNone } from '../../utils';
 import { FoamWorkspace } from '../../core/model/workspace';
 import { Logger } from '../../core/utils/log';
 import { Resource, ResourceParser } from '../../core/model/note';
@@ -13,6 +12,7 @@ import { fromVsCodeUri, toVsCodeUri } from '../../utils/vsc-utils';
 import { MarkdownLink } from '../../core/services/markdown-link';
 import { Position } from '../../core/model/position';
 import { TextEdit } from '../../core/services/text-edit';
+import { isNone, isSome } from '../../core/utils';
 
 export const WIKILINK_EMBED_REGEX =
   /((?:(?:full|content)-(?:inline|card)|full|content|inline|card)?!\[\[[^[\]]+?\]\])/;
@@ -34,7 +34,7 @@ export const markdownItWikilinkEmbed = (
     regex: WIKILINK_EMBED_REGEX,
     replace: (wikilinkItem: string) => {
       try {
-        const [_, noteEmbedModifier, wikilink] = wikilinkItem.match(
+        const [, noteEmbedModifier, wikilink] = wikilinkItem.match(
           WIKILINK_EMBED_REGEX_GROUPS
         );
 

packages/foam-vscode/src/features/preview/wikilink-navigation.spec.ts

@@ -26,9 +26,9 @@ describe('Link generation in preview', () => {
     markdownItRemoveLinkReferences,
   ].reduce((acc, extension) => extension(acc, ws), MarkdownIt());
 
-  it('generates a link to a note', () => {
+  it('generates a link to a note using the note title as link', () => {
     expect(md.render(`[[note-a]]`)).toEqual(
-      `<p><a class='foam-note-link' title='${noteA.title}' href='/path/to/note-a.md' data-href='/path/to/note-a.md'>note-a</a></p>\n`
+      `<p><a class='foam-note-link' title='${noteA.title}' href='/path/to/note-a.md' data-href='/path/to/note-a.md'>${noteA.title}</a></p>\n`
     );
   });
 
@@ -48,7 +48,7 @@ describe('Link generation in preview', () => {
     const note = `[[note-a]]
     [note-a]: <note-a.md> "Note A"`;
     expect(md.render(note)).toEqual(
-      `<p><a class='foam-note-link' title='${noteA.title}' href='/path/to/note-a.md' data-href='/path/to/note-a.md'>note-a</a>\n[note-a]: &lt;note-a.md&gt; &quot;Note A&quot;</p>\n`
+      `<p><a class='foam-note-link' title='${noteA.title}' href='/path/to/note-a.md' data-href='/path/to/note-a.md'>${noteA.title}</a>\n[note-a]: &lt;note-a.md&gt; &quot;Note A&quot;</p>\n`
     );
   });
 
@@ -63,7 +63,7 @@ describe('Link generation in preview', () => {
 
   it('generates a link to a note with a specific section', () => {
     expect(md.render(`[[note-b#sec2]]`)).toEqual(
-      `<p><a class='foam-note-link' title='My second note#sec2' href='/path2/to/note-b.md#sec2' data-href='/path2/to/note-b.md#sec2'>note-b#sec2</a></p>\n`
+      `<p><a class='foam-note-link' title='My second note#sec2' href='/path2/to/note-b.md#sec2' data-href='/path2/to/note-b.md#sec2'>${noteB.title}#sec2</a></p>\n`
     );
   });
 
@@ -75,7 +75,7 @@ describe('Link generation in preview', () => {
 
   it('generates a link to a note if the note exists, but the section does not exist', () => {
     expect(md.render(`[[note-b#nonexistentsec]]`)).toEqual(
-      `<p><a class='foam-note-link' title='My second note#nonexistentsec' href='/path2/to/note-b.md#nonexistentsec' data-href='/path2/to/note-b.md#nonexistentsec'>note-b#nonexistentsec</a></p>\n`
+      `<p><a class='foam-note-link' title='My second note#nonexistentsec' href='/path2/to/note-b.md#nonexistentsec' data-href='/path2/to/note-b.md#nonexistentsec'>${noteB.title}#nonexistentsec</a></p>\n`
     );
   });
 

packages/foam-vscode/src/features/preview/wikilink-navigation.ts

@@ -2,7 +2,6 @@
 
 import markdownItRegex from 'markdown-it-regex';
 import * as vscode from 'vscode';
-import { isNone } from '../../utils';
 import { FoamWorkspace } from '../../core/model/workspace';
 import { Logger } from '../../core/utils/log';
 import { toVsCodeUri } from '../../utils/vsc-utils';
@@ -10,6 +9,7 @@ import { MarkdownLink } from '../../core/services/markdown-link';
 import { Range } from '../../core/model/range';
 import { isEmpty } from 'lodash';
 import { toSlug } from '../../utils/slug';
+import { isNone } from '../../core/utils';
 
 export const markdownItWikilinkNavigation = (
   md: markdownit,
@@ -42,13 +42,17 @@ export const markdownItWikilinkNavigation = (
           return getPlaceholderLink(label);
         }
 
+        const resourceLabel = isEmpty(alias)
+          ? `${resource.title}${formattedSection}`
+          : alias;
         const resourceLink = `/${vscode.workspace.asRelativePath(
-          toVsCodeUri(resource.uri)
+          toVsCodeUri(resource.uri),
+          false
         )}`;
         return getResourceLink(
           `${resource.title}${formattedSection}`,
           `${resourceLink}${linkSection}`,
-          label
+          resourceLabel
         );
       } catch (e) {
         Logger.error(

packages/foam-vscode/src/features/tag-completion.ts

@@ -1,7 +1,8 @@
 import * as vscode from 'vscode';
 import { Foam } from '../core/model/foam';
 import { FoamTags } from '../core/model/tags';
-import { isInFrontMatter, isOnYAMLKeywordLine, mdDocSelector } from '../utils';
+import { isInFrontMatter, isOnYAMLKeywordLine } from '../core/utils/md';
+import { mdDocSelector } from '../services/editor';
 
 // this regex is different from HASHTAG_REGEX in that it does not look for a
 // #+character. It uses a negative look-ahead for `# `

packages/foam-vscode/src/features/wikilink-diagnostics.ts

@@ -5,13 +5,13 @@ import { Resource, ResourceParser } from '../core/model/note';
 import { Range } from '../core/model/range';
 import { FoamWorkspace } from '../core/model/workspace';
 import { MarkdownLink } from '../core/services/markdown-link';
-import { isNone } from '../utils';
 import {
   fromVsCodeUri,
   toVsCodePosition,
   toVsCodeRange,
   toVsCodeUri,
 } from '../utils/vsc-utils';
+import { isNone } from '../core/utils';
 
 const AMBIGUOUS_IDENTIFIER_CODE = 'ambiguous-identifier';
 const UNKNOWN_SECTION_CODE = 'unknown-section';
@@ -240,12 +240,12 @@ const createReplaceSectionCommand = (
   section: string
 ): vscode.CodeAction => {
   const action = new vscode.CodeAction(
-    `Use ${section}`,
+    `${section}`,
     vscode.CodeActionKind.QuickFix
   );
   action.command = {
     command: REPLACE_TEXT_COMMAND.name,
-    title: `Use section ${section}`,
+    title: `Use section "${section}"`,
     arguments: [
       {
         value: section,
@@ -269,7 +269,7 @@ const createFindIdentifierCommand = (
   possibleTargets: vscode.Uri[]
 ): vscode.CodeAction => {
   const action = new vscode.CodeAction(
-    `Use ${vscode.workspace.asRelativePath(target)}`,
+    `${vscode.workspace.asRelativePath(target)}`,
     vscode.CodeActionKind.QuickFix
   );
   action.command = {

packages/foam-vscode/src/services/editor.ts

@@ -1,6 +1,4 @@
 import { isEmpty } from 'lodash';
-import { asAbsoluteUri, URI } from '../core/model/uri';
-import { TextEncoder } from 'util';
 import {
   EndOfLine,
   FileType,
@@ -8,15 +6,18 @@ import {
   Selection,
   SnippetString,
   TextDocument,
+  TextEditor,
   Uri,
   ViewColumn,
   window,
   workspace,
   WorkspaceEdit,
+  MarkdownString,
 } from 'vscode';
-import { focusNote } from '../utils';
+import { getExcerpt, stripFrontMatter, stripImages } from '../core/utils/md';
+import { isSome } from '../core/utils/core';
 import { fromVsCodeUri, toVsCodeUri } from '../utils/vsc-utils';
-import { isSome } from '../core/utils';
+import { asAbsoluteUri, URI } from '../core/model/uri';
 import {
   AlwaysIncludeMatcher,
   FileListBasedMatcher,
@@ -31,6 +32,36 @@ interface SelectionInfo {
   content: string;
 }
 
+/**
+ * Returns a MarkdownString of the note content
+ * @param note A Foam Note
+ */
+export function getNoteTooltip(content: string): string {
+  const strippedContent = stripFrontMatter(stripImages(content));
+  return formatMarkdownTooltip(strippedContent) as any;
+}
+
+export function formatMarkdownTooltip(content: string): MarkdownString {
+  const LINES_LIMIT = 16;
+  const { excerpt, lines } = getExcerpt(content, LINES_LIMIT);
+  const totalLines = content.split('\n').length;
+  const diffLines = totalLines - lines;
+  const ellipsis = diffLines > 0 ? `\n\n[...] *(+ ${diffLines} lines)*` : '';
+  const md = new MarkdownString(`${excerpt}${ellipsis}`);
+  md.isTrusted = true;
+  return md;
+}
+
+export const mdDocSelector = [
+  { language: 'markdown', scheme: 'file' },
+  { language: 'markdown', scheme: 'vscode-vfs' },
+  { language: 'markdown', scheme: 'untitled' },
+];
+
+export function isMdEditor(editor: TextEditor) {
+  return editor && editor.document && editor.document.languageId === 'markdown';
+}
+
 export function findSelectionContent(): SelectionInfo | undefined {
   const editor = window.activeTextEditor;
   if (editor === undefined) {
@@ -51,6 +82,24 @@ export function findSelectionContent(): SelectionInfo | undefined {
   };
 }
 
+export async function focusNote(
+  notePath: URI,
+  moveCursorToEnd: boolean,
+  viewColumn: ViewColumn = ViewColumn.Active
+) {
+  const document = await workspace.openTextDocument(toVsCodeUri(notePath));
+  const editor = await window.showTextDocument(document, viewColumn);
+
+  // Move the cursor to end of the file
+  if (moveCursorToEnd) {
+    const { lineCount } = editor.document;
+    const { range } = editor.document.lineAt(lineCount - 1);
+    editor.selection = new Selection(range.end, range.end);
+  }
+
+  return { document, editor };
+}
+
 export async function createDocAndFocus(
   text: SnippetString,
   filepath: URI,
@@ -171,9 +220,9 @@ export async function createMatcherAndDataStore(excludes: string[]): Promise<{
     let files: Uri[] = [];
     for (const folder of workspace.workspaceFolders) {
       const uris = await workspace.findFiles(
-        new RelativePattern(folder.uri.path, '**/*'),
+        new RelativePattern(folder.uri, '**/*'),
         new RelativePattern(
-          folder.uri.path,
+          folder.uri,
           `{${excludePatterns.get(folder.name).join(',')}}`
         )
       );

packages/foam-vscode/src/services/logging.ts

@@ -1,7 +1,10 @@
-import { window, commands, ExtensionContext } from 'vscode';
+import { workspace, window, commands, ExtensionContext } from 'vscode';
 import { IDisposable } from '../core/common/lifecycle';
 import { BaseLogger, ILogger, LogLevel } from '../core/utils/log';
-import { getFoamLoggerLevel } from '../settings';
+
+function getFoamLoggerLevel(): LogLevel {
+  return workspace.getConfiguration('foam.logging').get('level') ?? 'info';
+}
 
 export interface VsCodeLogger extends ILogger, IDisposable {
   show();

packages/foam-vscode/src/services/templates.ts

@@ -1,5 +1,4 @@
 import { URI } from '../core/model/uri';
-import { TextEncoder } from 'util';
 import {
   SnippetString,
   ViewColumn,
@@ -8,7 +7,6 @@ import {
   window,
   workspace,
 } from 'vscode';
-import { focusNote, isNone } from '../utils';
 import { fromVsCodeUri, toVsCodeUri } from '../utils/vsc-utils';
 import { extractFoamTemplateFrontmatterMetadata } from '../utils/template-frontmatter-parser';
 import { UserCancelledOperation } from './errors';
@@ -18,6 +16,7 @@ import {
   deleteFile,
   fileExists,
   findSelectionContent,
+  focusNote,
   getCurrentEditorDirectory,
   readFile,
   replaceSelection,
@@ -25,6 +24,7 @@ import {
 import { Resolver } from './variable-resolver';
 import dateFormat from 'dateformat';
 import { getFoamVsCodeConfig } from './config';
+import { isNone } from '../core/utils';
 
 /**
  * The templates directory

packages/foam-vscode/src/settings.ts

@@ -1,6 +1,5 @@
 import { workspace, GlobPattern } from 'vscode';
 import { uniq } from 'lodash';
-import { LogLevel } from './core/utils/log';
 import { getFoamVsCodeConfig } from './services/config';
 
 /**
@@ -39,15 +38,6 @@ export function getAttachmentsExtensions() {
     .map(ext => '.' + ext.trim());
 }
 
-export function getWikilinkDefinitionSetting():
-  | 'withExtensions'
-  | 'withoutExtensions'
-  | 'off' {
-  return workspace
-    .getConfiguration('foam.edit')
-    .get('linkReferenceDefinitions', 'withoutExtensions');
-}
-
 /** Retrieve the list of file ignoring globs. */
 export function getIgnoredFilesSetting(): GlobPattern[] {
   return [
@@ -56,35 +46,3 @@ export function getIgnoredFilesSetting(): GlobPattern[] {
     ...Object.keys(workspace.getConfiguration().get('files.exclude', {})),
   ];
 }
-
-/** Retrieves the maximum length for a Graph node title. */
-export function getTitleMaxLength(): number {
-  return workspace.getConfiguration('foam.graph').get('titleMaxLength');
-}
-
-/** Retrieve the graph's style object */
-export function getGraphStyle(): object {
-  return workspace.getConfiguration('foam.graph').get('style');
-}
-
-export function getFoamLoggerLevel(): LogLevel {
-  return workspace.getConfiguration('foam.logging').get('level') ?? 'info';
-}
-
-/** Retrieve the orphans configuration */
-export function getOrphansConfig(): GroupedResourcesConfig {
-  const orphansConfig = workspace.getConfiguration('foam.orphans');
-  const exclude: string[] = orphansConfig.get('exclude');
-  return { exclude };
-}
-
-/** Retrieve the placeholders configuration */
-export function getPlaceholdersConfig(): GroupedResourcesConfig {
-  const placeholderCfg = workspace.getConfiguration('foam.placeholders');
-  const exclude: string[] = placeholderCfg.get('exclude');
-  return { exclude };
-}
-
-export interface GroupedResourcesConfig {
-  exclude: string[];
-}

packages/foam-vscode/src/utils.ts

@@ -1,235 +0,0 @@
-import {
-  Range,
-  TextDocument,
-  window,
-  Position,
-  TextEditor,
-  workspace,
-  Selection,
-  MarkdownString,
-  ViewColumn,
-} from 'vscode';
-import matter from 'gray-matter';
-import { toVsCodeUri } from './utils/vsc-utils';
-import { URI } from './core/model/uri';
-import { getEditorEOL } from './services/editor';
-
-export const mdDocSelector = [
-  { language: 'markdown', scheme: 'file' },
-  { language: 'markdown', scheme: 'untitled' },
-];
-
-export function isMdEditor(editor: TextEditor) {
-  return editor && editor.document && editor.document.languageId === 'markdown';
-}
-
-export function detectGeneratedCode(
-  fullText: string,
-  header: string,
-  footer: string
-): { range: Range | null; lines: string[] } {
-  const lines = fullText.split(getEditorEOL());
-
-  const headerLine = lines.findIndex(line => line === header);
-  const footerLine = lines.findIndex(line => line === footer);
-
-  if (headerLine < 0 || headerLine >= footerLine) {
-    return {
-      range: null,
-      lines: [],
-    };
-  }
-
-  return {
-    range: new Range(
-      new Position(headerLine, 0),
-      new Position(footerLine, lines[footerLine].length + 1)
-    ),
-    lines: lines.slice(headerLine + 1, footerLine + 1),
-  };
-}
-
-export function hasEmptyTrailing(doc: TextDocument): boolean {
-  return doc.lineAt(doc.lineCount - 1).isEmptyOrWhitespace;
-}
-
-export function getText(range: Range): string {
-  return window.activeTextEditor.document.getText(range);
-}
-
-/**
- * Used for the "Copy to Clipboard Without Brackets" command
- *
- */
-export function removeBrackets(s: string): string {
-  // take in the string, split on space
-  const stringSplitBySpace = s.split(' ');
-
-  // loop through words
-  const modifiedWords = stringSplitBySpace.map(currentWord => {
-    if (currentWord.includes('[[')) {
-      // all of these transformations will turn this "[[you-are-awesome]]"
-      // to this "you are awesome"
-      let word = currentWord.replace(/(\[\[)/g, '');
-      word = word.replace(/(\]\])/g, '');
-      word = word.replace(/(.mdx|.md|.markdown)/g, '');
-      word = word.replace(/[-]/g, ' ');
-
-      // then we titlecase the word so "you are awesome"
-      // becomes "You Are Awesome"
-      const titleCasedWord = toTitleCase(word);
-
-      return titleCasedWord;
-    }
-
-    return currentWord;
-  });
-
-  return modifiedWords.join(' ');
-}
-
-/**
- * Takes in a string and returns it titlecased
- *
- * @example toTitleCase("hello world") -> "Hello World"
- */
-export function toTitleCase(word: string): string {
-  return word
-    .split(' ')
-    .map(word => word[0].toUpperCase() + word.substring(1))
-    .join(' ');
-}
-
-/**
- * Verify the given object is defined
- *
- * @param value The object to verify
- */
-export function isSome<T>(
-  value: T | null | undefined | void
-): value is NonNullable<T> {
-  //
-  return value != null;
-}
-
-/**
- * Verify the given object is not defined
- *
- * @param value The object to verify
- */
-export function isNone<T>(
-  value: T | null | undefined | void
-): value is null | undefined | void {
-  return value == null;
-}
-
-export async function focusNote(
-  notePath: URI,
-  moveCursorToEnd: boolean,
-  viewColumn: ViewColumn = ViewColumn.Active
-) {
-  const document = await workspace.openTextDocument(toVsCodeUri(notePath));
-  const editor = await window.showTextDocument(document, viewColumn);
-
-  // Move the cursor to end of the file
-  if (moveCursorToEnd) {
-    const { lineCount } = editor.document;
-    const { range } = editor.document.lineAt(lineCount - 1);
-    editor.selection = new Selection(range.end, range.end);
-  }
-
-  return { document, editor };
-}
-
-export function getContainsTooltip(titles: string[]): string {
-  const TITLES_LIMIT = 5;
-  const ellipsis = titles.length > TITLES_LIMIT ? ',...' : '';
-  return `Contains "${titles.slice(0, TITLES_LIMIT).join('", "')}"${ellipsis}`;
-}
-
-/**
- * Depending on the current vscode version, returns a MarkdownString of the
- * note content casted as string or returns a simple string
- * MarkdownString is only available from 1.52.1 onwards
- * https://code.visualstudio.com/updates/v1_52#_markdown-tree-tooltip-api
- * @param note A Foam Note
- */
-export function getNoteTooltip(content: string): string {
-  const strippedContent = stripFrontMatter(stripImages(content));
-  return formatMarkdownTooltip(strippedContent) as any;
-}
-
-export function formatMarkdownTooltip(content: string): MarkdownString {
-  const LINES_LIMIT = 16;
-  const { excerpt, lines } = getExcerpt(content, LINES_LIMIT);
-  const totalLines = content.split('\n').length;
-  const diffLines = totalLines - lines;
-  const ellipsis = diffLines > 0 ? `\n\n[...] *(+ ${diffLines} lines)*` : '';
-  const md = new MarkdownString(`${excerpt}${ellipsis}`);
-  md.isTrusted = true;
-  return md;
-}
-
-export function getExcerpt(
-  markdown: string,
-  maxLines: number
-): { excerpt: string; lines: number } {
-  const OFFSET_LINES_LIMIT = 5;
-  const paragraphs = markdown.replace(/\r\n/g, '\n').split('\n\n');
-  const excerpt: string[] = [];
-  let lines = 0;
-  for (const paragraph of paragraphs) {
-    const n = paragraph.split('\n').length;
-    if (lines > maxLines || lines + n - maxLines > OFFSET_LINES_LIMIT) {
-      break;
-    }
-    excerpt.push(paragraph);
-    lines = lines + n + 1;
-  }
-  return { excerpt: excerpt.join('\n\n'), lines };
-}
-
-export function stripFrontMatter(markdown: string): string {
-  return matter(markdown).content.trim();
-}
-
-export function stripImages(markdown: string): string {
-  return markdown.replace(
-    /!\[(.*)\]\([-/\\.A-Za-z]*\)/gi,
-    '$1'.length ? '[Image: $1]' : ''
-  );
-}
-
-export function isInFrontMatter(content: string, lineNumber: number): Boolean {
-  const FIRST_DELIMITER_MATCH = /^---\s*?$/gm;
-  const LAST_DELIMITER_MATCH = /^[-.]{3}\s*?$/g;
-
-  // if we're on the first line, we're not _yet_ in the front matter
-  if (lineNumber === 0) {
-    return false;
-  }
-
-  // look for --- at start, and a second --- or ... to end
-  if (content.match(FIRST_DELIMITER_MATCH) === null) {
-    return false;
-  }
-
-  const lines = content.split('\n');
-  lines.shift();
-  const endLineMatches = (l: string) => l.match(LAST_DELIMITER_MATCH);
-  const endLineNumber = lines.findIndex(endLineMatches);
-
-  return endLineNumber === -1 || endLineNumber >= lineNumber;
-}
-
-export function isOnYAMLKeywordLine(content: string, keyword: string): Boolean {
-  const keywordMatch = /^\s*(\w+):/gm;
-
-  if (content.match(keywordMatch) === null) {
-    return false;
-  }
-
-  const matches = Array.from(content.matchAll(keywordMatch));
-  const lastMatch = matches[matches.length - 1];
-  return lastMatch[1] === keyword;
-}

packages/foam-vscode/src/utils/vsc-utils.ts

@@ -9,7 +9,7 @@ export const toVsCodePosition = (p: FoamPosition): Position =>
 export const toVsCodeRange = (r: FoamRange): Range =>
   new Range(r.start.line, r.start.character, r.end.line, r.end.character);
 
-export const toVsCodeUri = (u: FoamURI): Uri => Uri.parse(u.toString());
+export const toVsCodeUri = (u: FoamURI): Uri => Uri.from(u);
 
 export const fromVsCodeUri = (u: Uri): FoamURI => FoamURI.parse(u.toString());
 

packages/foam-vscode/test-data/__scaffold__/file-with-different-link-formats.md

@@ -0,0 +1,21 @@
+# File with different link formats
+
+markdown link [home page](https://foambubble.github.io/)
+
+wikilink to file [[first-document]].
+
+markdown format link to local [file](first-document.md)
+
+embedded wikilink to file ![[second-document]].
+
+wikilink to placeholder [[non-exist-file]]
+
+in-note anchor [[file-with-different-link-formats#one section]]
+
+alias to anchor [[file-with-different-link-formats#one section|another name]]
+
+alias [[first-document|an alias]]
+
+dupilcated wikilink to file [[first-document]]
+
+# one section

readme.md

@@ -5,7 +5,7 @@
 👀*This is an early stage project under rapid development. For updates join the [Foam community Discord](https://foambubble.github.io/join-discord/g)! 💬*
 
 <!-- ALL-CONTRIBUTORS-BADGE:START - Do not remove or modify this section -->
-[![All Contributors](https://img.shields.io/badge/all_contributors-115-orange.svg?style=flat-square)](#contributors-)
+[![All Contributors](https://img.shields.io/badge/all_contributors-121-orange.svg?style=flat-square)](#contributors-)
 <!-- ALL-CONTRIBUTORS-BADGE:END -->
 
 [![Visual Studio Marketplace Installs](https://img.shields.io/visual-studio-marketplace/i/foam.foam-vscode?label=VS%20Code%20Installs)](https://marketplace.visualstudio.com/items?itemName=foam.foam-vscode)
@@ -190,6 +190,16 @@ Foam is licensed under the [MIT license](LICENSE).
 [Backlinking]: docs/user/features/backlinking.md "Backlinking"
 [//end]: # "Autogenerated link references"
 
+## Contribution Guide
+
+See the [Contribution Guide](https://foambubble.github.io/foam/dev/contribution-guide)
+
+## Code of conduct
+
+See the [Code of Conduct](https://foambubble.github.io/foam/dev/code-of-conduct)
+
+
+
 ## Contributors ✨
 
 Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/docs/en/emoji-key)):
@@ -347,6 +357,14 @@ Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/d
       <td align="center" valign="top" width="14.28%"><a href="https://amnesiak.org/me"><img src="https://avatars.githubusercontent.com/u/952059?v=4?s=60" width="60px;" alt="Tony Cheneau"/><br /><sub><b>Tony Cheneau</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=tcheneau" title="Documentation">📖</a></td>
       <td align="center" valign="top" width="14.28%"><a href="https://github.com/nicholas-l"><img src="https://avatars.githubusercontent.com/u/12977174?v=4?s=60" width="60px;" alt="Nicholas Latham"/><br /><sub><b>Nicholas Latham</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=nicholas-l" title="Code">💻</a></td>
       <td align="center" valign="top" width="14.28%"><a href="https://thara.dev"><img src="https://avatars.githubusercontent.com/u/1532891?v=4?s=60" width="60px;" alt="Tomochika Hara"/><br /><sub><b>Tomochika Hara</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=thara" title="Documentation">📖</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="https://github.com/dcarosone"><img src="https://avatars.githubusercontent.com/u/11495017?v=4?s=60" width="60px;" alt="Daniel Carosone"/><br /><sub><b>Daniel Carosone</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=dcarosone" title="Documentation">📖</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="https://github.com/MABruni"><img src="https://avatars.githubusercontent.com/u/100445384?v=4?s=60" width="60px;" alt="Miguel Angel Bruni Montero"/><br /><sub><b>Miguel Angel Bruni Montero</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=MABruni" title="Code">💻</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="https://github.com/Walshkev"><img src="https://avatars.githubusercontent.com/u/77123083?v=4?s=60" width="60px;" alt="Kevin Walsh "/><br /><sub><b>Kevin Walsh </b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=Walshkev" title="Documentation">📖</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="http://hereistheusername.github.io/"><img src="https://avatars.githubusercontent.com/u/33437051?v=4?s=60" width="60px;" alt="Xinglan Liu"/><br /><sub><b>Xinglan Liu</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=hereistheusername" title="Code">💻</a></td>
+    </tr>
+    <tr>
+      <td align="center" valign="top" width="14.28%"><a href="http://www.hegghammer.com"><img src="https://avatars.githubusercontent.com/u/64712218?v=4?s=60" width="60px;" alt="Thomas Hegghammer"/><br /><sub><b>Thomas Hegghammer</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=Hegghammer" title="Documentation">📖</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="https://github.com/PiotrAleksander"><img src="https://avatars.githubusercontent.com/u/6314591?v=4?s=60" width="60px;" alt="Piotr Mrzygłosz"/><br /><sub><b>Piotr Mrzygłosz</b></sub></a><br /><a href="https://github.com/foambubble/foam/commits?author=PiotrAleksander" title="Documentation">📖</a></td>
     </tr>
   </tbody>
 </table>