refactor: refactor subcommands and move tests to its own package

cmd/imports/imports.go

@@ -0,0 +1,253 @@
+// Copyright 2026 Google LLC
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//     http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
+package imports
+
+import (
+	// Import prompt packages for side effect of registration
+	_ "github.com/googleapis/genai-toolbox/internal/prompts/custom"
+
+	// Import tool packages for side effect of registration
+	_ "github.com/googleapis/genai-toolbox/internal/tools/alloydb/alloydbcreatecluster"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/alloydb/alloydbcreateinstance"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/alloydb/alloydbcreateuser"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/alloydb/alloydbgetcluster"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/alloydb/alloydbgetinstance"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/alloydb/alloydbgetuser"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/alloydb/alloydblistclusters"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/alloydb/alloydblistinstances"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/alloydb/alloydblistusers"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/alloydb/alloydbwaitforoperation"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/alloydbainl"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigquery/bigqueryanalyzecontribution"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigquery/bigqueryconversationalanalytics"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigquery/bigqueryexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigquery/bigqueryforecast"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigquery/bigquerygetdatasetinfo"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigquery/bigquerygettableinfo"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigquery/bigquerylistdatasetids"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigquery/bigquerylisttableids"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigquery/bigquerysearchcatalog"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigquery/bigquerysql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigtable"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cassandra/cassandracql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/clickhouse/clickhouseexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/clickhouse/clickhouselistdatabases"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/clickhouse/clickhouselisttables"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/clickhouse/clickhousesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudgda"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcarefhirfetchpage"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcarefhirpatienteverything"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcarefhirpatientsearch"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcaregetdataset"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcaregetdicomstore"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcaregetdicomstoremetrics"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcaregetfhirresource"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcaregetfhirstore"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcaregetfhirstoremetrics"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcarelistdicomstores"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcarelistfhirstores"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcareretrieverendereddicominstance"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcaresearchdicominstances"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcaresearchdicomseries"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudhealthcare/cloudhealthcaresearchdicomstudies"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudloggingadmin/cloudloggingadminlistlognames"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudloggingadmin/cloudloggingadminlistresourcetypes"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudloggingadmin/cloudloggingadminquerylogs"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudmonitoring"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsql/cloudsqlcloneinstance"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsql/cloudsqlcreatebackup"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsql/cloudsqlcreatedatabase"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsql/cloudsqlcreateusers"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsql/cloudsqlgetinstances"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsql/cloudsqllistdatabases"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsql/cloudsqllistinstances"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsql/cloudsqlrestorebackup"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsql/cloudsqlwaitforoperation"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsqlmssql/cloudsqlmssqlcreateinstance"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsqlmysql/cloudsqlmysqlcreateinstance"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsqlpg/cloudsqlpgcreateinstances"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/cloudsqlpg/cloudsqlpgupgradeprecheck"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/couchbase"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/dataform/dataformcompilelocal"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/dataplex/dataplexlookupentry"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/dataplex/dataplexsearchaspecttypes"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/dataplex/dataplexsearchentries"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/dgraph"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/elasticsearch/elasticsearchesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/firebird/firebirdexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/firebird/firebirdsql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/firestore/firestoreadddocuments"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/firestore/firestoredeletedocuments"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/firestore/firestoregetdocuments"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/firestore/firestoregetrules"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/firestore/firestorelistcollections"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/firestore/firestorequery"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/firestore/firestorequerycollection"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/firestore/firestoreupdatedocument"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/firestore/firestorevalidaterules"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/http"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookeradddashboardelement"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookeradddashboardfilter"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerconversationalanalytics"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookercreateprojectfile"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerdeleteprojectfile"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerdevmode"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergenerateembedurl"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetconnectiondatabases"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetconnections"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetconnectionschemas"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetconnectiontablecolumns"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetconnectiontables"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetdashboards"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetdimensions"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetexplores"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetfilters"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetlooks"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetmeasures"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetmodels"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetparameters"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetprojectfile"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetprojectfiles"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookergetprojects"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerhealthanalyze"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerhealthpulse"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerhealthvacuum"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookermakedashboard"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookermakelook"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerquery"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerquerysql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerqueryurl"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerrundashboard"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerrunlook"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookerupdateprojectfile"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/looker/lookervalidateproject"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mindsdb/mindsdbexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mindsdb/mindsdbsql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mongodb/mongodbaggregate"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mongodb/mongodbdeletemany"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mongodb/mongodbdeleteone"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mongodb/mongodbfind"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mongodb/mongodbfindone"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mongodb/mongodbinsertmany"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mongodb/mongodbinsertone"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mongodb/mongodbupdatemany"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mongodb/mongodbupdateone"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mssql/mssqlexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mssql/mssqllisttables"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mssql/mssqlsql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mysql/mysqlexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mysql/mysqlgetqueryplan"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mysql/mysqllistactivequeries"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mysql/mysqllisttablefragmentation"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mysql/mysqllisttables"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mysql/mysqllisttablesmissinguniqueindexes"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/mysql/mysqlsql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/neo4j/neo4jcypher"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/neo4j/neo4jexecutecypher"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/neo4j/neo4jschema"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/oceanbase/oceanbaseexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/oceanbase/oceanbasesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/oracle/oracleexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/oracle/oraclesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgresdatabaseoverview"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgresexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgresgetcolumncardinality"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistactivequeries"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistavailableextensions"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistdatabasestats"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistindexes"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistinstalledextensions"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistlocks"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistpgsettings"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistpublicationtables"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistquerystats"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistroles"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistschemas"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistsequences"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgresliststoredprocedure"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslisttables"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslisttablespaces"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslisttablestats"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslisttriggers"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslistviews"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgreslongrunningtransactions"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgresreplicationstats"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/postgres/postgressql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/redis"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/serverlessspark/serverlesssparkcancelbatch"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/serverlessspark/serverlesssparkcreatepysparkbatch"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/serverlessspark/serverlesssparkcreatesparkbatch"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/serverlessspark/serverlesssparkgetbatch"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/serverlessspark/serverlesssparklistbatches"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/singlestore/singlestoreexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/singlestore/singlestoresql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/snowflake/snowflakeexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/snowflake/snowflakesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/spanner/spannerexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/spanner/spannerlistgraphs"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/spanner/spannerlisttables"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/spanner/spannersql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/sqlite/sqliteexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/sqlite/sqlitesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/tidb/tidbexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/tidb/tidbsql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/trino/trinoexecutesql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/trino/trinosql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/utility/wait"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/valkey"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/yugabytedbsql"
+
+	// Import source packages for side effect of registration
+	_ "github.com/googleapis/genai-toolbox/internal/sources/alloydbadmin"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/alloydbpg"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/bigquery"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/bigtable"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/cassandra"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/clickhouse"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/cloudgda"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/cloudhealthcare"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/cloudloggingadmin"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/cloudmonitoring"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/cloudsqladmin"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/cloudsqlmssql"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/cloudsqlmysql"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/cloudsqlpg"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/couchbase"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/dataplex"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/dgraph"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/elasticsearch"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/firebird"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/firestore"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/http"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/looker"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/mindsdb"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/mongodb"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/mssql"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/mysql"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/neo4j"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/oceanbase"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/oracle"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/postgres"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/redis"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/serverlessspark"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/singlestore"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/snowflake"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/spanner"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/sqlite"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/tidb"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/trino"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/valkey"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/yugabytedb"
+)

cmd/options.go

@@ -1,30 +0,0 @@
-// Copyright 2024 Google LLC
-//
-// Licensed under the Apache License, Version 2.0 (the "License");
-// you may not use this file except in compliance with the License.
-// You may obtain a copy of the License at
-//
-//     http://www.apache.org/licenses/LICENSE-2.0
-//
-// Unless required by applicable law or agreed to in writing, software
-// distributed under the License is distributed on an "AS IS" BASIS,
-// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-// See the License for the specific language governing permissions and
-// limitations under the License.
-
-package cmd
-
-import (
-	"io"
-)
-
-// Option is a function that configures a Command.
-type Option func(*Command)
-
-// WithStreams overrides the default writer.
-func WithStreams(out, err io.Writer) Option {
-	return func(c *Command) {
-		c.outStream = out
-		c.errStream = err
-	}
-}

internal/cli/invoke/command.go

@@ -18,37 +18,15 @@ import (
 	"context"
 	"encoding/json"
 	"fmt"
-	"io"
 
-	"github.com/googleapis/genai-toolbox/internal/log"
+	"github.com/googleapis/genai-toolbox/internal/cli"
 	"github.com/googleapis/genai-toolbox/internal/server"
 	"github.com/googleapis/genai-toolbox/internal/server/resources"
 	"github.com/googleapis/genai-toolbox/internal/util/parameters"
 	"github.com/spf13/cobra"
 )
 
-// RootCommand defines the interface for required by invoke subcommand.
-// This allows subcommands to access shared resources and functionality without
-// direct coupling to the root command's implementation.
-type RootCommand interface {
-	// Config returns a copy of the current server configuration.
-	Config() server.ServerConfig
-
-	// Out returns the writer used for standard output.
-	Out() io.Writer
-
-	// LoadConfig loads and merges the configuration from files, folders, and prebuilts.
-	LoadConfig(ctx context.Context) error
-
-	// Setup initializes the runtime environment, including logging and telemetry.
-	// It returns the updated context and a shutdown function to be called when finished.
-	Setup(ctx context.Context) (context.Context, func(context.Context) error, error)
-
-	// Logger returns the logger instance.
-	Logger() log.Logger
-}
-
-func NewCommand(rootCmd RootCommand) *cobra.Command {
+func NewCommand(opts *cli.ToolboxOptions) *cobra.Command {
 	cmd := &cobra.Command{
 		Use:   "invoke <tool-name> [params]",
 		Short: "Execute a tool directly",
@@ -58,17 +36,17 @@ Example:
   toolbox invoke my-tool '{"param1": "value1"}'`,
 		Args: cobra.MinimumNArgs(1),
 		RunE: func(c *cobra.Command, args []string) error {
-			return runInvoke(c, args, rootCmd)
+			return runInvoke(c, args, opts)
 		},
 	}
 	return cmd
 }
 
-func runInvoke(cmd *cobra.Command, args []string, rootCmd RootCommand) error {
+func runInvoke(cmd *cobra.Command, args []string, opts *cli.ToolboxOptions) error {
 	ctx, cancel := context.WithCancel(cmd.Context())
 	defer cancel()
 
-	ctx, shutdown, err := rootCmd.Setup(ctx)
+	ctx, shutdown, err := opts.Setup(ctx)
 	if err != nil {
 		return err
 	}
@@ -76,16 +54,16 @@ func runInvoke(cmd *cobra.Command, args []string, rootCmd RootCommand) error {
 		_ = shutdown(ctx)
 	}()
 
-	// Load and merge tool configurations
-	if err := rootCmd.LoadConfig(ctx); err != nil {
+	_, err = opts.LoadConfig(ctx)
+	if err != nil {
 		return err
 	}
 
 	// Initialize Resources
-	sourcesMap, authServicesMap, embeddingModelsMap, toolsMap, toolsetsMap, promptsMap, promptsetsMap, err := server.InitializeConfigs(ctx, rootCmd.Config())
+	sourcesMap, authServicesMap, embeddingModelsMap, toolsMap, toolsetsMap, promptsMap, promptsetsMap, err := server.InitializeConfigs(ctx, opts.Cfg)
 	if err != nil {
 		errMsg := fmt.Errorf("failed to initialize resources: %w", err)
-		rootCmd.Logger().ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
@@ -96,7 +74,7 @@ func runInvoke(cmd *cobra.Command, args []string, rootCmd RootCommand) error {
 	tool, ok := resourceMgr.GetTool(toolName)
 	if !ok {
 		errMsg := fmt.Errorf("tool %q not found", toolName)
-		rootCmd.Logger().ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
@@ -109,7 +87,7 @@ func runInvoke(cmd *cobra.Command, args []string, rootCmd RootCommand) error {
 	if paramsInput != "" {
 		if err := json.Unmarshal([]byte(paramsInput), &params); err != nil {
 			errMsg := fmt.Errorf("params must be a valid JSON string: %w", err)
-			rootCmd.Logger().ErrorContext(ctx, errMsg.Error())
+			opts.Logger.ErrorContext(ctx, errMsg.Error())
 			return errMsg
 		}
 	}
@@ -117,14 +95,14 @@ func runInvoke(cmd *cobra.Command, args []string, rootCmd RootCommand) error {
 	parsedParams, err := parameters.ParseParams(tool.GetParameters(), params, nil)
 	if err != nil {
 		errMsg := fmt.Errorf("invalid parameters: %w", err)
-		rootCmd.Logger().ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
 	parsedParams, err = tool.EmbedParams(ctx, parsedParams, resourceMgr.GetEmbeddingModelMap())
 	if err != nil {
 		errMsg := fmt.Errorf("error embedding parameters: %w", err)
-		rootCmd.Logger().ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
@@ -132,19 +110,19 @@ func runInvoke(cmd *cobra.Command, args []string, rootCmd RootCommand) error {
 	requiresAuth, err := tool.RequiresClientAuthorization(resourceMgr)
 	if err != nil {
 		errMsg := fmt.Errorf("failed to check auth requirements: %w", err)
-		rootCmd.Logger().ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 	if requiresAuth {
 		errMsg := fmt.Errorf("client authorization is not supported")
-		rootCmd.Logger().ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
 	result, err := tool.Invoke(ctx, resourceMgr, parsedParams, "")
 	if err != nil {
 		errMsg := fmt.Errorf("tool execution failed: %w", err)
-		rootCmd.Logger().ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
@@ -152,10 +130,10 @@ func runInvoke(cmd *cobra.Command, args []string, rootCmd RootCommand) error {
 	output, err := json.MarshalIndent(result, "", "  ")
 	if err != nil {
 		errMsg := fmt.Errorf("failed to marshal result: %w", err)
-		rootCmd.Logger().ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
-	fmt.Fprintln(rootCmd.Out(), string(output))
+	fmt.Fprintln(opts.IOStreams.Out, string(output))
 
 	return nil
 }

internal/cli/invoke/command_test.go

@@ -12,16 +12,38 @@
 // See the License for the specific language governing permissions and
 // limitations under the License.
 
-package cmd
+package invoke
 
 import (
-	"context"
+	"bytes"
 	"os"
 	"path/filepath"
 	"strings"
 	"testing"
+
+	"github.com/googleapis/genai-toolbox/internal/cli"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/bigquery"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/sqlite"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/bigquery/bigquerysql"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/sqlite/sqlitesql"
+	"github.com/spf13/cobra"
 )
 
+func invokeCommand(args []string) (string, error) {
+	parentCmd := &cobra.Command{Use: "toolbox"}
+
+	buf := new(bytes.Buffer)
+	opts := cli.NewToolboxOptions(cli.WithIOStreams(buf, buf))
+	cli.PersistentFlags(parentCmd, opts)
+
+	cmd := NewCommand(opts)
+	parentCmd.AddCommand(cmd)
+	parentCmd.SetArgs(args)
+
+	err := parentCmd.Execute()
+	return buf.String(), err
+}
+
 func TestInvokeTool(t *testing.T) {
 	// Create a temporary tools file
 	tmpDir := t.TempDir()
@@ -86,7 +108,7 @@ tools:
 
 	for _, tc := range tcs {
 		t.Run(tc.desc, func(t *testing.T) {
-			_, got, err := invokeCommandWithContext(context.Background(), tc.args)
+			got, err := invokeCommand(tc.args)
 			if (err != nil) != tc.wantErr {
 				t.Fatalf("got error %v, wantErr %v", err, tc.wantErr)
 			}
@@ -121,7 +143,7 @@ tools:
 	}
 
 	args := []string{"invoke", "bq-tool", "--tools-file", toolsFilePath}
-	_, _, err := invokeCommandWithContext(context.Background(), args)
+	_, err := invokeCommand(args)
 	if err == nil {
 		t.Fatal("expected error for tool requiring client auth, but got nil")
 	}

internal/cli/options.go

@@ -0,0 +1,251 @@
+// Copyright 2026 Google LLC
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//     http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
+package cli
+
+import (
+	"context"
+	"fmt"
+	"io"
+	"os"
+	"slices"
+	"strings"
+
+	"github.com/googleapis/genai-toolbox/internal/log"
+	"github.com/googleapis/genai-toolbox/internal/prebuiltconfigs"
+	"github.com/googleapis/genai-toolbox/internal/server"
+	"github.com/googleapis/genai-toolbox/internal/telemetry"
+	"github.com/googleapis/genai-toolbox/internal/util"
+)
+
+type IOStreams struct {
+	In     io.Reader
+	Out    io.Writer
+	ErrOut io.Writer
+}
+
+// ToolboxOptions holds dependencies shared by all commands.
+type ToolboxOptions struct {
+	IOStreams       IOStreams
+	Logger          log.Logger
+	Cfg             server.ServerConfig
+	ToolsFile       string
+	ToolsFiles      []string
+	ToolsFolder     string
+	PrebuiltConfigs []string
+}
+
+// Option defines a function that modifies the ToolboxOptions struct.
+type Option func(*ToolboxOptions)
+
+// NewToolboxOptions creates a new instance with defaults, then applies any
+// provided options.
+func NewToolboxOptions(opts ...Option) *ToolboxOptions {
+	o := &ToolboxOptions{
+		IOStreams: IOStreams{
+			In:     os.Stdin,
+			Out:    os.Stdout,
+			ErrOut: os.Stderr,
+		},
+	}
+
+	for _, opt := range opts {
+		opt(o)
+	}
+	return o
+}
+
+// Apply allows you to update an EXISTING ToolboxOptions instance.
+// This is useful for "late binding".
+func (o *ToolboxOptions) Apply(opts ...Option) {
+	for _, opt := range opts {
+		opt(o)
+	}
+}
+
+// WithIOStreams updates the IO streams.
+func WithIOStreams(out, err io.Writer) Option {
+	return func(o *ToolboxOptions) {
+		o.IOStreams.Out = out
+		o.IOStreams.ErrOut = err
+	}
+}
+
+// Setup create logger and telemetry instrumentations.
+func (opts *ToolboxOptions) Setup(ctx context.Context) (context.Context, func(context.Context) error, error) {
+	// If stdio, set logger's out stream (usually DEBUG and INFO logs) to
+	// errStream
+	loggerOut := opts.IOStreams.Out
+	if opts.Cfg.Stdio {
+		loggerOut = opts.IOStreams.ErrOut
+	}
+
+	// Handle logger separately from config
+	logger, err := log.NewLogger(opts.Cfg.LoggingFormat.String(), opts.Cfg.LogLevel.String(), loggerOut, opts.IOStreams.ErrOut)
+	if err != nil {
+		return ctx, nil, fmt.Errorf("unable to initialize logger: %w", err)
+	}
+
+	ctx = util.WithLogger(ctx, logger)
+	opts.Logger = logger
+
+	// Set up OpenTelemetry
+	otelShutdown, err := telemetry.SetupOTel(ctx, opts.Cfg.Version, opts.Cfg.TelemetryOTLP, opts.Cfg.TelemetryGCP, opts.Cfg.TelemetryServiceName)
+	if err != nil {
+		errMsg := fmt.Errorf("error setting up OpenTelemetry: %w", err)
+		logger.ErrorContext(ctx, errMsg.Error())
+		return ctx, nil, errMsg
+	}
+
+	shutdownFunc := func(ctx context.Context) error {
+		err := otelShutdown(ctx)
+		if err != nil {
+			errMsg := fmt.Errorf("error shutting down OpenTelemetry: %w", err)
+			logger.ErrorContext(ctx, errMsg.Error())
+			return err
+		}
+		return nil
+	}
+
+	instrumentation, err := telemetry.CreateTelemetryInstrumentation(opts.Cfg.Version)
+	if err != nil {
+		errMsg := fmt.Errorf("unable to create telemetry instrumentation: %w", err)
+		logger.ErrorContext(ctx, errMsg.Error())
+		return ctx, shutdownFunc, errMsg
+	}
+
+	ctx = util.WithInstrumentation(ctx, instrumentation)
+
+	return ctx, shutdownFunc, nil
+}
+
+// LoadConfig checks and merge files that should be loaded into the server
+func (opts *ToolboxOptions) LoadConfig(ctx context.Context) (bool, error) {
+	// Determine if Custom Files should be loaded
+	// Check for explicit custom flags
+	isCustomConfigured := opts.ToolsFile != "" || len(opts.ToolsFiles) > 0 || opts.ToolsFolder != ""
+
+	// Determine if default 'tools.yaml' should be used (No prebuilt AND No custom flags)
+	useDefaultToolsFile := len(opts.PrebuiltConfigs) == 0 && !isCustomConfigured
+
+	if useDefaultToolsFile {
+		opts.ToolsFile = "tools.yaml"
+		isCustomConfigured = true
+	}
+
+	logger, err := util.LoggerFromContext(ctx)
+	if err != nil {
+		return isCustomConfigured, err
+	}
+
+	var allToolsFiles []ToolsFile
+
+	// Load Prebuilt Configuration
+
+	if len(opts.PrebuiltConfigs) > 0 {
+		slices.Sort(opts.PrebuiltConfigs)
+		sourcesList := strings.Join(opts.PrebuiltConfigs, ", ")
+		logMsg := fmt.Sprintf("Using prebuilt tool configurations for: %s", sourcesList)
+		logger.InfoContext(ctx, logMsg)
+
+		for _, configName := range opts.PrebuiltConfigs {
+			buf, err := prebuiltconfigs.Get(configName)
+			if err != nil {
+				logger.ErrorContext(ctx, err.Error())
+				return isCustomConfigured, err
+			}
+
+			// Parse into ToolsFile struct
+			parsed, err := parseToolsFile(ctx, buf)
+			if err != nil {
+				errMsg := fmt.Errorf("unable to parse prebuilt tool configuration for '%s': %w", configName, err)
+				logger.ErrorContext(ctx, errMsg.Error())
+				return isCustomConfigured, errMsg
+			}
+			allToolsFiles = append(allToolsFiles, parsed)
+		}
+	}
+
+	// Load Custom Configurations
+	if isCustomConfigured {
+		// Enforce exclusivity among custom flags (tools-file vs tools-files vs tools-folder)
+		if (opts.ToolsFile != "" && len(opts.ToolsFiles) > 0) ||
+			(opts.ToolsFile != "" && opts.ToolsFolder != "") ||
+			(len(opts.ToolsFiles) > 0 && opts.ToolsFolder != "") {
+			errMsg := fmt.Errorf("--tools-file, --tools-files, and --tools-folder flags cannot be used simultaneously")
+			logger.ErrorContext(ctx, errMsg.Error())
+			return isCustomConfigured, errMsg
+		}
+
+		var customTools ToolsFile
+		var err error
+
+		if len(opts.ToolsFiles) > 0 {
+			// Use tools-files
+			logger.InfoContext(ctx, fmt.Sprintf("Loading and merging %d tool configuration files", len(opts.ToolsFiles)))
+			customTools, err = LoadAndMergeToolsFiles(ctx, opts.ToolsFiles)
+		} else if opts.ToolsFolder != "" {
+			// Use tools-folder
+			logger.InfoContext(ctx, fmt.Sprintf("Loading and merging all YAML files from directory: %s", opts.ToolsFolder))
+			customTools, err = LoadAndMergeToolsFolder(ctx, opts.ToolsFolder)
+		} else {
+			// Use single file (tools-file or default `tools.yaml`)
+			buf, readFileErr := os.ReadFile(opts.ToolsFile)
+			if readFileErr != nil {
+				errMsg := fmt.Errorf("unable to read tool file at %q: %w", opts.ToolsFile, readFileErr)
+				logger.ErrorContext(ctx, errMsg.Error())
+				return isCustomConfigured, errMsg
+			}
+			customTools, err = parseToolsFile(ctx, buf)
+			if err != nil {
+				err = fmt.Errorf("unable to parse tool file at %q: %w", opts.ToolsFile, err)
+			}
+		}
+
+		if err != nil {
+			logger.ErrorContext(ctx, err.Error())
+			return isCustomConfigured, err
+		}
+		allToolsFiles = append(allToolsFiles, customTools)
+	}
+
+	// Modify version string based on loaded configurations
+	if len(opts.PrebuiltConfigs) > 0 {
+		tag := "prebuilt"
+		if isCustomConfigured {
+			tag = "custom"
+		}
+		// prebuiltConfigs is already sorted above
+		for _, configName := range opts.PrebuiltConfigs {
+			opts.Cfg.Version += fmt.Sprintf("+%s.%s", tag, configName)
+		}
+	}
+
+	// Merge Everything
+	// This will error if custom tools collide with prebuilt tools
+	finalToolsFile, err := mergeToolsFiles(allToolsFiles...)
+	if err != nil {
+		logger.ErrorContext(ctx, err.Error())
+		return isCustomConfigured, err
+	}
+
+	opts.Cfg.SourceConfigs = finalToolsFile.Sources
+	opts.Cfg.AuthServiceConfigs = finalToolsFile.AuthServices
+	opts.Cfg.EmbeddingModelConfigs = finalToolsFile.EmbeddingModels
+	opts.Cfg.ToolConfigs = finalToolsFile.Tools
+	opts.Cfg.ToolsetConfigs = finalToolsFile.Toolsets
+	opts.Cfg.PromptConfigs = finalToolsFile.Prompts
+
+	return isCustomConfigured, nil
+}

internal/cli/options_test.go

@@ -12,57 +12,38 @@
 // See the License for the specific language governing permissions and
 // limitations under the License.
 
-package cmd
+package cli
 
 import (
 	"errors"
 	"io"
 	"testing"
-
-	"github.com/spf13/cobra"
 )
 
-func TestCommandOptions(t *testing.T) {
+func TestToolboxOptions(t *testing.T) {
 	w := io.Discard
 	tcs := []struct {
 		desc    string
-		isValid func(*Command) error
+		isValid func(*ToolboxOptions) error
 		option  Option
 	}{
 		{
 			desc: "with logger",
-			isValid: func(c *Command) error {
-				if c.outStream != w || c.errStream != w {
+			isValid: func(o *ToolboxOptions) error {
+				if o.IOStreams.Out != w || o.IOStreams.ErrOut != w {
 					return errors.New("loggers do not match")
 				}
 				return nil
 			},
-			option: WithStreams(w, w),
+			option: WithIOStreams(w, w),
 		},
 	}
 	for _, tc := range tcs {
 		t.Run(tc.desc, func(t *testing.T) {
-			got, err := invokeProxyWithOption(tc.option)
-			if err != nil {
-				t.Fatal(err)
-			}
+			got := NewToolboxOptions(tc.option)
 			if err := tc.isValid(got); err != nil {
 				t.Errorf("option did not initialize command correctly: %v", err)
 			}
 		})
 	}
 }
-
-func invokeProxyWithOption(o Option) (*Command, error) {
-	c := NewCommand(o)
-	// Keep the test output quiet
-	c.SilenceUsage = true
-	c.SilenceErrors = true
-	// Disable execute behavior
-	c.RunE = func(*cobra.Command, []string) error {
-		return nil
-	}
-
-	err := c.Execute()
-	return c, err
-}

internal/cli/persistent_flags.go

@@ -0,0 +1,46 @@
+// Copyright 2026 Google LLC
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//     http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
+package cli
+
+import (
+	"fmt"
+	"strings"
+
+	"github.com/googleapis/genai-toolbox/internal/prebuiltconfigs"
+	"github.com/spf13/cobra"
+)
+
+// PersistentFlags sets up flags that are available for all commands and
+// subcommands
+// It is also used to set up persistent flags during subcommand unit tests
+func PersistentFlags(parentCmd *cobra.Command, opts *ToolboxOptions) {
+	persistentFlags := parentCmd.PersistentFlags()
+
+	persistentFlags.StringVar(&opts.ToolsFile, "tools-file", "", "File path specifying the tool configuration. Cannot be used with --tools-files, or --tools-folder.")
+	persistentFlags.StringSliceVar(&opts.ToolsFiles, "tools-files", []string{}, "Multiple file paths specifying tool configurations. Files will be merged. Cannot be used with --tools-file, or --tools-folder.")
+	persistentFlags.StringVar(&opts.ToolsFolder, "tools-folder", "", "Directory path containing YAML tool configuration files. All .yaml and .yml files in the directory will be loaded and merged. Cannot be used with --tools-file, or --tools-files.")
+	persistentFlags.Var(&opts.Cfg.LogLevel, "log-level", "Specify the minimum level logged. Allowed: 'DEBUG', 'INFO', 'WARN', 'ERROR'.")
+	persistentFlags.Var(&opts.Cfg.LoggingFormat, "logging-format", "Specify logging format to use. Allowed: 'standard' or 'JSON'.")
+	persistentFlags.BoolVar(&opts.Cfg.TelemetryGCP, "telemetry-gcp", false, "Enable exporting directly to Google Cloud Monitoring.")
+	persistentFlags.StringVar(&opts.Cfg.TelemetryOTLP, "telemetry-otlp", "", "Enable exporting using OpenTelemetry Protocol (OTLP) to the specified endpoint (e.g. 'http://127.0.0.1:4318')")
+	persistentFlags.StringVar(&opts.Cfg.TelemetryServiceName, "telemetry-service-name", "toolbox", "Sets the value of the service.name resource attribute for telemetry data.")
+	// Fetch prebuilt tools sources to customize the help description
+	prebuiltHelp := fmt.Sprintf(
+		"Use a prebuilt tool configuration by source type. Allowed: '%s'. Can be specified multiple times.",
+		strings.Join(prebuiltconfigs.GetPrebuiltSources(), "', '"),
+	)
+	persistentFlags.StringSliceVar(&opts.PrebuiltConfigs, "prebuilt", []string{}, prebuiltHelp)
+	persistentFlags.StringSliceVar(&opts.Cfg.UserAgentMetadata, "user-agent-metadata", []string{}, "Appends additional metadata to the User-Agent.")
+}

internal/cli/skills/command.go

@@ -22,7 +22,7 @@ import (
 	"path/filepath"
 	"sort"
 
-	"github.com/googleapis/genai-toolbox/internal/log"
+	"github.com/googleapis/genai-toolbox/internal/cli"
 	"github.com/googleapis/genai-toolbox/internal/server"
 	"github.com/googleapis/genai-toolbox/internal/server/resources"
 	"github.com/googleapis/genai-toolbox/internal/tools"
@@ -30,28 +30,9 @@ import (
 	"github.com/spf13/cobra"
 )
 
-// RootCommand defines the interface for required by skills-generate subcommand.
-// This allows subcommands to access shared resources and functionality without
-// direct coupling to the root command's implementation.
-type RootCommand interface {
-	// Config returns a copy of the current server configuration.
-	Config() server.ServerConfig
-
-	// LoadConfig loads and merges the configuration from files, folders, and prebuilts.
-	LoadConfig(ctx context.Context) error
-
-	// Setup initializes the runtime environment, including logging and telemetry.
-	// It returns the updated context and a shutdown function to be called when finished.
-	Setup(ctx context.Context) (context.Context, func(context.Context) error, error)
-
-	// Logger returns the logger instance.
-	Logger() log.Logger
-}
-
 // Command is the command for generating skills.
-type Command struct {
+type command struct {
 	*cobra.Command
-	rootCmd     RootCommand
 	name        string
 	description string
 	toolset     string
@@ -59,15 +40,13 @@ type Command struct {
 }
 
 // NewCommand creates a new Command.
-func NewCommand(rootCmd RootCommand) *cobra.Command {
-	cmd := &Command{
-		rootCmd: rootCmd,
-	}
+func NewCommand(opts *cli.ToolboxOptions) *cobra.Command {
+	cmd := &command{}
 	cmd.Command = &cobra.Command{
 		Use:   "skills-generate",
 		Short: "Generate skills from tool configurations",
 		RunE: func(c *cobra.Command, args []string) error {
-			return cmd.run(c)
+			return run(cmd, opts)
 		},
 	}
 
@@ -81,11 +60,11 @@ func NewCommand(rootCmd RootCommand) *cobra.Command {
 	return cmd.Command
 }
 
-func (c *Command) run(cmd *cobra.Command) error {
+func run(cmd *command, opts *cli.ToolboxOptions) error {
 	ctx, cancel := context.WithCancel(cmd.Context())
 	defer cancel()
 
-	ctx, shutdown, err := c.rootCmd.Setup(ctx)
+	ctx, shutdown, err := opts.Setup(ctx)
 	if err != nil {
 		return err
 	}
@@ -93,39 +72,37 @@ func (c *Command) run(cmd *cobra.Command) error {
 		_ = shutdown(ctx)
 	}()
 
-	logger := c.rootCmd.Logger()
-
-	// Load and merge tool configurations
-	if err := c.rootCmd.LoadConfig(ctx); err != nil {
+	_, err = opts.LoadConfig(ctx)
+	if err != nil {
 		return err
 	}
 
-	if err := os.MkdirAll(c.outputDir, 0755); err != nil {
+	if err := os.MkdirAll(cmd.outputDir, 0755); err != nil {
 		errMsg := fmt.Errorf("error creating output directory: %w", err)
-		logger.ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
-	logger.InfoContext(ctx, fmt.Sprintf("Generating skill '%s'...", c.name))
+	opts.Logger.InfoContext(ctx, fmt.Sprintf("Generating skill '%s'...", cmd.name))
 
 	// Initialize toolbox and collect tools
-	allTools, err := c.collectTools(ctx)
+	allTools, err := cmd.collectTools(ctx, opts)
 	if err != nil {
 		errMsg := fmt.Errorf("error collecting tools: %w", err)
-		logger.ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
 	if len(allTools) == 0 {
-		logger.InfoContext(ctx, "No tools found to generate.")
+		opts.Logger.InfoContext(ctx, "No tools found to generate.")
 		return nil
 	}
 
 	// Generate the combined skill directory
-	skillPath := filepath.Join(c.outputDir, c.name)
+	skillPath := filepath.Join(cmd.outputDir, cmd.name)
 	if err := os.MkdirAll(skillPath, 0755); err != nil {
 		errMsg := fmt.Errorf("error creating skill directory: %w", err)
-		logger.ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
@@ -133,7 +110,7 @@ func (c *Command) run(cmd *cobra.Command) error {
 	assetsPath := filepath.Join(skillPath, "assets")
 	if err := os.MkdirAll(assetsPath, 0755); err != nil {
 		errMsg := fmt.Errorf("error creating assets dir: %w", err)
-		logger.ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
@@ -141,7 +118,7 @@ func (c *Command) run(cmd *cobra.Command) error {
 	scriptsPath := filepath.Join(skillPath, "scripts")
 	if err := os.MkdirAll(scriptsPath, 0755); err != nil {
 		errMsg := fmt.Errorf("error creating scripts dir: %w", err)
-		logger.ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
@@ -154,10 +131,10 @@ func (c *Command) run(cmd *cobra.Command) error {
 
 	for _, toolName := range toolNames {
 		// Generate YAML config in asset directory
-		minimizedContent, err := generateToolConfigYAML(c.rootCmd.Config(), toolName)
+		minimizedContent, err := generateToolConfigYAML(opts.Cfg, toolName)
 		if err != nil {
 			errMsg := fmt.Errorf("error generating filtered config for %s: %w", toolName, err)
-			logger.ErrorContext(ctx, errMsg.Error())
+			opts.Logger.ErrorContext(ctx, errMsg.Error())
 			return errMsg
 		}
 
@@ -166,7 +143,7 @@ func (c *Command) run(cmd *cobra.Command) error {
 			destPath := filepath.Join(assetsPath, specificToolsFileName)
 			if err := os.WriteFile(destPath, minimizedContent, 0644); err != nil {
 				errMsg := fmt.Errorf("error writing filtered config for %s: %w", toolName, err)
-				logger.ErrorContext(ctx, errMsg.Error())
+				opts.Logger.ErrorContext(ctx, errMsg.Error())
 				return errMsg
 			}
 		}
@@ -175,40 +152,40 @@ func (c *Command) run(cmd *cobra.Command) error {
 		scriptContent, err := generateScriptContent(toolName, specificToolsFileName)
 		if err != nil {
 			errMsg := fmt.Errorf("error generating script content for %s: %w", toolName, err)
-			logger.ErrorContext(ctx, errMsg.Error())
+			opts.Logger.ErrorContext(ctx, errMsg.Error())
 			return errMsg
 		}
 
 		scriptFilename := filepath.Join(scriptsPath, fmt.Sprintf("%s.js", toolName))
 		if err := os.WriteFile(scriptFilename, []byte(scriptContent), 0755); err != nil {
 			errMsg := fmt.Errorf("error writing script %s: %w", scriptFilename, err)
-			logger.ErrorContext(ctx, errMsg.Error())
+			opts.Logger.ErrorContext(ctx, errMsg.Error())
 			return errMsg
 		}
 	}
 
 	// Generate SKILL.md
-	skillContent, err := generateSkillMarkdown(c.name, c.description, allTools)
+	skillContent, err := generateSkillMarkdown(cmd.name, cmd.description, allTools)
 	if err != nil {
 		errMsg := fmt.Errorf("error generating SKILL.md content: %w", err)
-		logger.ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 	skillMdPath := filepath.Join(skillPath, "SKILL.md")
 	if err := os.WriteFile(skillMdPath, []byte(skillContent), 0644); err != nil {
 		errMsg := fmt.Errorf("error writing SKILL.md: %w", err)
-		logger.ErrorContext(ctx, errMsg.Error())
+		opts.Logger.ErrorContext(ctx, errMsg.Error())
 		return errMsg
 	}
 
-	logger.InfoContext(ctx, fmt.Sprintf("Successfully generated skill '%s' with %d tools.", c.name, len(allTools)))
+	opts.Logger.InfoContext(ctx, fmt.Sprintf("Successfully generated skill '%s' with %d tools.", cmd.name, len(allTools)))
 
 	return nil
 }
 
-func (c *Command) collectTools(ctx context.Context) (map[string]tools.Tool, error) {
+func (c *command) collectTools(ctx context.Context, opts *cli.ToolboxOptions) (map[string]tools.Tool, error) {
 	// Initialize Resources
-	sourcesMap, authServicesMap, embeddingModelsMap, toolsMap, toolsetsMap, promptsMap, promptsetsMap, err := server.InitializeConfigs(ctx, c.rootCmd.Config())
+	sourcesMap, authServicesMap, embeddingModelsMap, toolsMap, toolsetsMap, promptsMap, promptsetsMap, err := server.InitializeConfigs(ctx, opts.Cfg)
 	if err != nil {
 		return nil, fmt.Errorf("failed to initialize resources: %w", err)
 	}

internal/cli/skills/command_test.go

@@ -12,17 +12,36 @@
 // See the License for the specific language governing permissions and
 // limitations under the License.
 
-package cmd
+package skills
 
 import (
-	"context"
+	"bytes"
 	"os"
 	"path/filepath"
 	"strings"
 	"testing"
-	"time"
+
+	"github.com/googleapis/genai-toolbox/internal/cli"
+	_ "github.com/googleapis/genai-toolbox/internal/sources/sqlite"
+	_ "github.com/googleapis/genai-toolbox/internal/tools/sqlite/sqlitesql"
+	"github.com/spf13/cobra"
 )
 
+func invokeCommand(args []string) (string, error) {
+	parentCmd := &cobra.Command{Use: "toolbox"}
+
+	buf := new(bytes.Buffer)
+	opts := cli.NewToolboxOptions(cli.WithIOStreams(buf, buf))
+	cli.PersistentFlags(parentCmd, opts)
+
+	cmd := NewCommand(opts)
+	parentCmd.AddCommand(cmd)
+	parentCmd.SetArgs(args)
+
+	err := parentCmd.Execute()
+	return buf.String(), err
+}
+
 func TestGenerateSkill(t *testing.T) {
 	// Create a temporary directory for tests
 	tmpDir := t.TempDir()
@@ -55,10 +74,7 @@ tools:
 		"--description", "hello tool",
 	}
 
-	ctx, cancel := context.WithTimeout(context.Background(), 30*time.Second)
-	defer cancel()
-
-	_, got, err := invokeCommandWithContext(ctx, args)
+	got, err := invokeCommand(args)
 	if err != nil {
 		t.Fatalf("command failed: %v\nOutput: %s", err, got)
 	}
@@ -136,7 +152,7 @@ func TestGenerateSkill_NoConfig(t *testing.T) {
 		"--description", "test",
 	}
 
-	_, _, err := invokeCommandWithContext(context.Background(), args)
+	_, err := invokeCommand(args)
 	if err == nil {
 		t.Fatal("expected command to fail when no configuration is provided and tools.yaml is missing")
 	}
@@ -170,7 +186,7 @@ func TestGenerateSkill_MissingArguments(t *testing.T) {
 
 	for _, tt := range tests {
 		t.Run(tt.name, func(t *testing.T) {
-			_, got, err := invokeCommandWithContext(context.Background(), tt.args)
+			got, err := invokeCommand(tt.args)
 			if err == nil {
 				t.Fatalf("expected command to fail due to missing arguments, but it succeeded\nOutput: %s", got)
 			}

internal/cli/tools_file.go

@@ -0,0 +1,349 @@
+// Copyright 2026 Google LLC
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//     http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
+package cli
+
+import (
+	"bytes"
+	"context"
+	"fmt"
+	"io"
+	"os"
+	"path/filepath"
+	"regexp"
+	"slices"
+	"strings"
+
+	"github.com/goccy/go-yaml"
+	"github.com/googleapis/genai-toolbox/internal/server"
+)
+
+type ToolsFile struct {
+	Sources         server.SourceConfigs         `yaml:"sources"`
+	AuthServices    server.AuthServiceConfigs    `yaml:"authServices"`
+	EmbeddingModels server.EmbeddingModelConfigs `yaml:"embeddingModels"`
+	Tools           server.ToolConfigs           `yaml:"tools"`
+	Toolsets        server.ToolsetConfigs        `yaml:"toolsets"`
+	Prompts         server.PromptConfigs         `yaml:"prompts"`
+}
+
+// parseEnv replaces environment variables ${ENV_NAME} with their values.
+// also support ${ENV_NAME:default_value}.
+func parseEnv(input string) (string, error) {
+	re := regexp.MustCompile(`\$\{(\w+)(:([^}]*))?\}`)
+
+	var err error
+	output := re.ReplaceAllStringFunc(input, func(match string) string {
+		parts := re.FindStringSubmatch(match)
+
+		// extract the variable name
+		variableName := parts[1]
+		if value, found := os.LookupEnv(variableName); found {
+			return value
+		}
+		if len(parts) >= 4 && parts[2] != "" {
+			return parts[3]
+		}
+		err = fmt.Errorf("environment variable not found: %q", variableName)
+		return ""
+	})
+	return output, err
+}
+
+// parseToolsFile parses the provided yaml into appropriate configs.
+func parseToolsFile(ctx context.Context, raw []byte) (ToolsFile, error) {
+	var toolsFile ToolsFile
+	// Replace environment variables if found
+	output, err := parseEnv(string(raw))
+	if err != nil {
+		return toolsFile, fmt.Errorf("error parsing environment variables: %s", err)
+	}
+	raw = []byte(output)
+
+	raw, err = convertToolsFile(raw)
+	if err != nil {
+		return toolsFile, fmt.Errorf("error converting tools file: %s", err)
+	}
+
+	// Parse contents
+	toolsFile.Sources, toolsFile.AuthServices, toolsFile.EmbeddingModels, toolsFile.Tools, toolsFile.Toolsets, toolsFile.Prompts, err = server.UnmarshalResourceConfig(ctx, raw)
+	if err != nil {
+		return toolsFile, err
+	}
+	return toolsFile, nil
+}
+
+func convertToolsFile(raw []byte) ([]byte, error) {
+	var input yaml.MapSlice
+	decoder := yaml.NewDecoder(bytes.NewReader(raw), yaml.UseOrderedMap())
+
+	// convert to tools file v2
+	var buf bytes.Buffer
+	encoder := yaml.NewEncoder(&buf)
+
+	v1keys := []string{"sources", "authSources", "authServices", "embeddingModels", "tools", "toolsets", "prompts"}
+	for {
+		if err := decoder.Decode(&input); err != nil {
+			if err == io.EOF {
+				break
+			}
+			return nil, err
+		}
+		for _, item := range input {
+			key, ok := item.Key.(string)
+			if !ok {
+				return nil, fmt.Errorf("unexpected non-string key in input: %v", item.Key)
+			}
+			// check if the key is config file v1's key
+			if slices.Contains(v1keys, key) {
+				// check if value conversion to yaml.MapSlice successfully
+				// fields such as "tools" in toolsets might pass the first check but
+				// fail to convert to MapSlice
+				if slice, ok := item.Value.(yaml.MapSlice); ok {
+					// Deprecated: convert authSources to authServices
+					if key == "authSources" {
+						key = "authServices"
+					}
+					transformed, err := transformDocs(key, slice)
+					if err != nil {
+						return nil, err
+					}
+					// encode per-doc
+					for _, doc := range transformed {
+						if err := encoder.Encode(doc); err != nil {
+							return nil, err
+						}
+					}
+				} else {
+					// invalid input will be ignored
+					// we don't want to throw error here since the config could
+					// be valid but with a different order such as:
+					// ---
+					// tools:
+					// - tool_a
+					// kind: toolsets
+					// ---
+					continue
+				}
+			} else {
+				// this doc is already v2, encode to buf
+				if err := encoder.Encode(input); err != nil {
+					return nil, err
+				}
+				break
+			}
+		}
+	}
+	return buf.Bytes(), nil
+}
+
+// transformDocs transforms the configuration file from v1 format to v2
+// yaml.MapSlice will preserve the order in a map
+func transformDocs(kind string, input yaml.MapSlice) ([]yaml.MapSlice, error) {
+	var transformed []yaml.MapSlice
+	for _, entry := range input {
+		entryName, ok := entry.Key.(string)
+		if !ok {
+			return nil, fmt.Errorf("unexpected non-string key for entry in '%s': %v", kind, entry.Key)
+		}
+		entryBody := ProcessValue(entry.Value, kind == "toolsets")
+
+		currentTransformed := yaml.MapSlice{
+			{Key: "kind", Value: kind},
+			{Key: "name", Value: entryName},
+		}
+
+		// Merge the transformed body into our result
+		if bodySlice, ok := entryBody.(yaml.MapSlice); ok {
+			currentTransformed = append(currentTransformed, bodySlice...)
+		} else {
+			return nil, fmt.Errorf("unable to convert entryBody to MapSlice")
+		}
+		transformed = append(transformed, currentTransformed)
+	}
+	return transformed, nil
+}
+
+// ProcessValue recursively looks for MapSlices to rename 'kind' -> 'type'
+func ProcessValue(v any, isToolset bool) any {
+	switch val := v.(type) {
+	case yaml.MapSlice:
+		// creating a new MapSlice is safer for recursive transformation
+		newVal := make(yaml.MapSlice, len(val))
+		for i, item := range val {
+			// Perform renaming
+			if item.Key == "kind" {
+				item.Key = "type"
+			}
+			// Recursive call for nested values (e.g., nested objects or lists)
+			item.Value = ProcessValue(item.Value, false)
+			newVal[i] = item
+		}
+		return newVal
+	case []any:
+		// Process lists: If it's a toolset top-level list, wrap it.
+		if isToolset {
+			return yaml.MapSlice{{Key: "tools", Value: val}}
+		}
+		// Otherwise, recurse into list items (to catch nested objects)
+		newVal := make([]any, len(val))
+		for i := range val {
+			newVal[i] = ProcessValue(val[i], false)
+		}
+		return newVal
+	default:
+		return val
+	}
+}
+
+// mergeToolsFiles merges multiple ToolsFile structs into one.
+// Detects and raises errors for resource conflicts in sources, authServices, tools, and toolsets.
+// All resource names (sources, authServices, tools, toolsets) must be unique across all files.
+func mergeToolsFiles(files ...ToolsFile) (ToolsFile, error) {
+	merged := ToolsFile{
+		Sources:         make(server.SourceConfigs),
+		AuthServices:    make(server.AuthServiceConfigs),
+		EmbeddingModels: make(server.EmbeddingModelConfigs),
+		Tools:           make(server.ToolConfigs),
+		Toolsets:        make(server.ToolsetConfigs),
+		Prompts:         make(server.PromptConfigs),
+	}
+
+	var conflicts []string
+
+	for fileIndex, file := range files {
+		// Check for conflicts and merge sources
+		for name, source := range file.Sources {
+			if _, exists := merged.Sources[name]; exists {
+				conflicts = append(conflicts, fmt.Sprintf("source '%s' (file #%d)", name, fileIndex+1))
+			} else {
+				merged.Sources[name] = source
+			}
+		}
+
+		// Check for conflicts and merge authServices
+		for name, authService := range file.AuthServices {
+			if _, exists := merged.AuthServices[name]; exists {
+				conflicts = append(conflicts, fmt.Sprintf("authService '%s' (file #%d)", name, fileIndex+1))
+			} else {
+				merged.AuthServices[name] = authService
+			}
+		}
+
+		// Check for conflicts and merge embeddingModels
+		for name, em := range file.EmbeddingModels {
+			if _, exists := merged.EmbeddingModels[name]; exists {
+				conflicts = append(conflicts, fmt.Sprintf("embedding model '%s' (file #%d)", name, fileIndex+1))
+			} else {
+				merged.EmbeddingModels[name] = em
+			}
+		}
+
+		// Check for conflicts and merge tools
+		for name, tool := range file.Tools {
+			if _, exists := merged.Tools[name]; exists {
+				conflicts = append(conflicts, fmt.Sprintf("tool '%s' (file #%d)", name, fileIndex+1))
+			} else {
+				merged.Tools[name] = tool
+			}
+		}
+
+		// Check for conflicts and merge toolsets
+		for name, toolset := range file.Toolsets {
+			if _, exists := merged.Toolsets[name]; exists {
+				conflicts = append(conflicts, fmt.Sprintf("toolset '%s' (file #%d)", name, fileIndex+1))
+			} else {
+				merged.Toolsets[name] = toolset
+			}
+		}
+
+		// Check for conflicts and merge prompts
+		for name, prompt := range file.Prompts {
+			if _, exists := merged.Prompts[name]; exists {
+				conflicts = append(conflicts, fmt.Sprintf("prompt '%s' (file #%d)", name, fileIndex+1))
+			} else {
+				merged.Prompts[name] = prompt
+			}
+		}
+	}
+
+	// If conflicts were detected, return an error
+	if len(conflicts) > 0 {
+		return ToolsFile{}, fmt.Errorf("resource conflicts detected:\n  - %s\n\nPlease ensure each source, authService, tool, toolset and prompt has a unique name across all files", strings.Join(conflicts, "\n  - "))
+	}
+
+	return merged, nil
+}
+
+// LoadAndMergeToolsFiles loads multiple YAML files and merges them
+func LoadAndMergeToolsFiles(ctx context.Context, filePaths []string) (ToolsFile, error) {
+	var toolsFiles []ToolsFile
+
+	for _, filePath := range filePaths {
+		buf, err := os.ReadFile(filePath)
+		if err != nil {
+			return ToolsFile{}, fmt.Errorf("unable to read tool file at %q: %w", filePath, err)
+		}
+
+		toolsFile, err := parseToolsFile(ctx, buf)
+		if err != nil {
+			return ToolsFile{}, fmt.Errorf("unable to parse tool file at %q: %w", filePath, err)
+		}
+
+		toolsFiles = append(toolsFiles, toolsFile)
+	}
+
+	mergedFile, err := mergeToolsFiles(toolsFiles...)
+	if err != nil {
+		return ToolsFile{}, fmt.Errorf("unable to merge tools files: %w", err)
+	}
+
+	return mergedFile, nil
+}
+
+// LoadAndMergeToolsFolder loads all YAML files from a directory and merges them
+func LoadAndMergeToolsFolder(ctx context.Context, folderPath string) (ToolsFile, error) {
+	// Check if directory exists
+	info, err := os.Stat(folderPath)
+	if err != nil {
+		return ToolsFile{}, fmt.Errorf("unable to access tools folder at %q: %w", folderPath, err)
+	}
+	if !info.IsDir() {
+		return ToolsFile{}, fmt.Errorf("path %q is not a directory", folderPath)
+	}
+
+	// Find all YAML files in the directory
+	pattern := filepath.Join(folderPath, "*.yaml")
+	yamlFiles, err := filepath.Glob(pattern)
+	if err != nil {
+		return ToolsFile{}, fmt.Errorf("error finding YAML files in %q: %w", folderPath, err)
+	}
+
+	// Also find .yml files
+	ymlPattern := filepath.Join(folderPath, "*.yml")
+	ymlFiles, err := filepath.Glob(ymlPattern)
+	if err != nil {
+		return ToolsFile{}, fmt.Errorf("error finding YML files in %q: %w", folderPath, err)
+	}
+
+	// Combine both file lists
+	allFiles := append(yamlFiles, ymlFiles...)
+
+	if len(allFiles) == 0 {
+		return ToolsFile{}, fmt.Errorf("no YAML files found in directory %q", folderPath)
+	}
+
+	// Use existing LoadAndMergeToolsFiles function
+	return LoadAndMergeToolsFiles(ctx, allFiles)
+}

tests/server.go

@@ -21,8 +21,10 @@ import (
 	"os"
 
 	yaml "github.com/goccy/go-yaml"
+	"github.com/spf13/cobra"
 
 	"github.com/googleapis/genai-toolbox/cmd"
+	"github.com/googleapis/genai-toolbox/internal/cli"
 )
 
 // tmpFileWithCleanup creates a temporary file with the content and returns the path and
@@ -50,7 +52,7 @@ func tmpFileWithCleanup(content []byte) (string, func(), error) {
 type CmdExec struct {
 	Out io.ReadCloser
 
-	cmd     *cmd.Command
+	cmd     *cobra.Command
 	cancel  context.CancelFunc
 	closers []io.Closer
 	done    chan bool // closed once the cmd is completed
@@ -77,7 +79,8 @@ func StartCmd(ctx context.Context, toolsFile map[string]any, args ...string) (*C
 		return nil, nil, fmt.Errorf("unable to open stdout pipe: %w", err)
 	}
 
-	c := cmd.NewCommand(cmd.WithStreams(pw, pw))
+	opts := cli.NewToolboxOptions(cli.WithIOStreams(pw, pw))
+	c := cmd.NewCommand(opts)
 	c.SetArgs(args)
 
 	t := &CmdExec{