Check-in revdep results

revdep/README.md

@@ -1,25 +1,42 @@
 # Revdeps
 
-## Failed to check (18)
+## Failed to check (27)
 
 |package            |version |error |warning |note |
 |:------------------|:-------|:-----|:-------|:----|
+|animalEKF          |1.2     |1     |        |     |
+|antaresViz         |?       |      |        |     |
+|AovBay             |0.1.0   |1     |        |     |
 |bigPint            |?       |      |        |     |
 |bioCancer          |?       |      |        |     |
-|ctsem              |3.9.1   |1     |        |     |
+|chipPCR            |1.0-2   |1     |        |     |
-|diveR              |?       |      |        |     |
+|ctsem              |3.10.0  |1     |        |     |
+|DynNom             |5.1     |1     |        |     |
 |EBImage            |?       |      |        |     |
 |g3viz              |?       |      |        |     |
 |GeneNetworkBuilder |?       |      |        |     |
-|grandR             |?       |      |        |     |
 |InterCellar        |?       |      |        |     |
 |LACE               |?       |      |        |     |
 |loon.shiny         |?       |      |        |     |
 |MatrixQCvis        |?       |      |        |     |
+|metricsgraphics    |?       |      |        |     |
 |modchart           |?       |      |        |     |
-|multilevelcoda     |1.2.3   |1     |        |     |
 |omicsViewer        |?       |      |        |     |
-|RQuantLib          |0.4.21  |1     |        |     |
+|robmedExtra        |0.1.0   |1     |        |     |
+|RQuantLib          |0.4.23  |1     |        |     |
 |rstanarm           |2.32.1  |1     |        |     |
-|Seurat             |?       |      |        |     |
+|SensMap            |0.7     |1     |        |     |
+|Seurat             |5.1.0   |1     |        |     |
+|shinyTempSignal    |0.0.8   |1     |        |     |
+|Signac             |1.13.0  |1     |        |     |
+|statsr             |0.3.0   |1     |        |     |
+|tidyvpc            |1.5.1   |1     |        |     |
+
+## New problems (3)
+
+|package      |version |error |warning |note   |
+|:------------|:-------|:-----|:-------|:------|
+|[idiogramFISH](problems.md#idiogramfish)|2.0.13  |1     |        |__+1__ |
+|[iheatmapr](problems.md#iheatmapr)|0.7.1   |      |        |__+1__ |
+|[polmineR](problems.md#polminer)|0.8.9   |      |        |__+1__ |
 

revdep/cran.md

@@ -1,19 +1,38 @@
 ## revdepcheck results
 
-We checked 1201 reverse dependencies (1191 from CRAN + 10 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 1213 reverse dependencies (1201 from CRAN + 12 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
- * We saw 0 new problems
+ * We saw 3 new problems
- * We failed to check 8 packages
+ * We failed to check 15 packages
 
 Issues with CRAN packages are summarised below.
 
+### New problems
+(This reports the first line of each new failure)
+
+* idiogramFISH
+  checking installed package size ... NOTE
+
+* iheatmapr
+  checking installed package size ... NOTE
+
+* polmineR
+  checking installed package size ... NOTE
+
 ### Failed to check
 
-* ctsem          (NA)
+* animalEKF       (NA)
-* diveR          (NA)
+* AovBay          (NA)
-* grandR         (NA)
+* chipPCR         (NA)
-* loon.shiny     (NA)
+* ctsem           (NA)
-* multilevelcoda (NA)
+* DynNom          (NA)
-* RQuantLib      (NA)
+* loon.shiny      (NA)
-* rstanarm       (NA)
+* robmedExtra     (NA)
-* Seurat         (NA)
+* RQuantLib       (NA)
+* rstanarm        (NA)
+* SensMap         (NA)
+* Seurat          (NA)
+* shinyTempSignal (NA)
+* Signac          (NA)
+* statsr          (NA)
+* tidyvpc         (NA)

revdep/problems.md

@@ -1 +1,94 @@
-*Wow, no problems at all. :)*
+# idiogramFISH
+
+<details>
+
+* Version: 2.0.13
+* GitHub: NA
+* Source code: https://github.com/cran/idiogramFISH
+* Date/Publication: 2023-08-22 16:50:02 UTC
+* Number of recursive dependencies: 164
+
+Run `revdepcheck::cloud_details(, "idiogramFISH")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking installed package size ... NOTE
+    ```
+      installed size is  5.1Mb
+      sub-directories of 1Mb or more:
+        R     1.5Mb
+        doc   2.0Mb
+    ```
+
+## In both
+
+*   checking running R code from vignettes ... ERROR
+    ```
+    Errors in running code in vignettes:
+    when running code in ‘index.Rmd’
+      ...
+    > if (requireNamespace("RCurl", quietly = TRUE)) {
+    +     v <- sub("Version: ", "", readLines("../DESCRIPTION")[3])
+    +     pkg <- "idiogramFISH"
+    +     l .... [TRUNCATED] 
+    Warning in file(con, "r") :
+      cannot open file '../DESCRIPTION': No such file or directory
+    
+      When sourcing ‘index.R’:
+    Error: cannot open the connection
+    Execution halted
+    
+      ‘AVignette.Rmd’ using ‘UTF-8’... OK
+      ‘index.Rmd’ using ‘UTF-8’... failed
+    ```
+
+# iheatmapr
+
+<details>
+
+* Version: 0.7.1
+* GitHub: https://github.com/ropensci/iheatmapr
+* Source code: https://github.com/cran/iheatmapr
+* Date/Publication: 2024-01-25 23:50:02 UTC
+* Number of recursive dependencies: 92
+
+Run `revdepcheck::cloud_details(, "iheatmapr")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking installed package size ... NOTE
+    ```
+      installed size is  5.3Mb
+      sub-directories of 1Mb or more:
+        R             1.5Mb
+        htmlwidgets   3.5Mb
+    ```
+
+# polmineR
+
+<details>
+
+* Version: 0.8.9
+* GitHub: https://github.com/PolMine/polmineR
+* Source code: https://github.com/cran/polmineR
+* Date/Publication: 2023-10-29 21:50:02 UTC
+* Number of recursive dependencies: 96
+
+Run `revdepcheck::cloud_details(, "polmineR")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking installed package size ... NOTE
+    ```
+      installed size is  5.3Mb
+      sub-directories of 1Mb or more:
+        R         2.0Mb
+        extdata   1.9Mb
+    ```
+