Debug code to see what is going on inside selectInput. Trying to set a value contained on server

Add link to Rook spec from docs

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: shiny
 Type: Package
 Title: Web Application Framework for R
-Version: 1.7.1.9002
+Version: 1.7.2.9000
 Authors@R: c(
     person("Winston", "Chang", role = c("aut", "cre"), email = "winston@rstudio.com", comment = c(ORCID = "0000-0002-1576-2126")),
     person("Joe", "Cheng", role = "aut", email = "joe@rstudio.com"),
@@ -105,7 +105,6 @@ Suggests:
     ggplot2,
     reactlog (>= 1.0.0),
     magrittr,
-    shinytest (>= 1.4.0.9003),
     yaml,
     future,
     dygraphs,
@@ -202,8 +201,10 @@ Collate:
     'version_selectize.R'
     'version_strftime.R'
     'viewer.R'
-RoxygenNote: 7.1.2
+RoxygenNote: 7.2.1
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 RdMacros: lifecycle
 Config/testthat/edition: 3
+Config/Needs/check:
+  rstudio/shinytest2

NEWS.md

@@ -1,21 +1,59 @@
-shiny 1.7.1.9001
+shiny 1.7.2.9000
 ================
 
+
+
+shiny 1.7.2
+===========
+
 ## Full changelog
 
-### Minor new features and improvements
+### Breaking changes
+
+* Closed #3626: `renderPlot()` (and `plotPNG()`) now uses `ragg::agg_png()` by default when the [`{ragg}` package](https://github.com/r-lib/ragg) is installed. To restore the previous behavior, set `options(shiny.useragg = FALSE)`. (#3654)
+
+### New features and improvements
+
+* Closed #1545: `insertUI()` now executes `<script>` tags. (#3630)
+
+* `fileInput()` can set the `capture` attribute to facilitates user access to a device's media capture mechanism, such as a camera, or microphone, from within a file upload control ([W3C HTML Media Capture](https://www.w3.org/TR/html-media-capture/)). (Thanks to khaled-alshamaa, #3481)
+
+* Closed tidyverse/dplyr#5552: Compatibility of dplyr 1.0 (and rlang chained errors in general) with `req()`, `validate()`, and friends.
+
+* Closed tidyverse/dplyr#6154: Values from an `actionButton()` had S3 classes in the incorrect order.
+
+* Closed #3346: Default for `ref` input in `runGithub()` changed from `"master"` to `"HEAD"`. (#3564)
+
+* Closed #3619: In R 4.2, `splitLayout()` no longer raises warnings about incorrect length in an `if` statement. (Thanks to @dmenne, #3625)
+
+### Bug fixes
+
+* Closed #3250:`{rlang}`/`{tidyeval}` conditions (i.e., warnings and errors) are no longer filtered from stack traces. (#3602)
+
+* Closed #3581: Errors in throttled/debounced reactive expressions no longer cause the session to exit. (#3624)
+
+* Closed #3657: `throttle.ts` and the `Throttler` typescript objects it provides now function as intended. (Thanks gto @dvg-p4, #3659)
+
+* The auto-reload feature (`options(shiny.autoreload=TRUE)`) was not being activated by `devmode(TRUE)`, despite a console message asserting that it was. (#3620)
+
+* Closed #2297: If an error occurred in parsing a value in a bookmark query string, an error would be thrown and nothing would be restored. Now a message is displayed and that value is ignored. (Thanks to @daattali, #3385)
+
+* Restored the previous behavior of automatically guessing the `Content-Type` header for `downloadHandler` functions when no explicit `contentType` argument is supplied. (#3393)
+
+* Previously, updating an input value without a corresponding Input binding element did not trigger a JavaScript `shiny:inputchanged` event. Now, if no Input binding element is found, the `shiny:inputchanged` event is triggered on `window.document`. (#3584)
+
+* Closed #2955: Input and output bindings previously attempted to use `el['data-input-id']`, but that never worked. They now use `el.getAttribute('data-input-id')` instead. (#3538)
+
+### Minor improvements
+
+* When taking a test snapshot, the sort order of the json keys of the `input`, `output`, and `export` fields is currently sorted using the locale of the machine. This can lead to inconsistent test snapshot results. To opt-in to a consistent ordering of snapshot fields with `{shinytest}`, please set the global option `options(shiny.snapshotsortc = TRUE)`. `{shinytest2}` users do not need to set this value. (#3515)
+
+* Closed rstudio/shinytest2#222: When restoring a context (i.e., bookmarking) from a URL, Shiny now better handles a trailing `=` after `_inputs_` and `_values_`. (#3648)
 
 * Shiny's internal HTML dependencies are now mounted dynamically instead of statically. (#3537)
 
 * HTML dependencies that are sent to dynamic UI now have better type checking, and no longer require a `dep.src.href` field. (#3537)
 
-### Bug fixes
-
-* Closed tidyverse/dplyr#5552: Compatibility of dplyr 1.0 (and rlang chained errors in general) with `req()`, `validate()`, and friends.
-
-* Closed #2955: Input and output bindings previously attempted to use `el['data-input-id']`, but that never worked. They now use `el.getAttribute('data-input-id')` instead. (#3538)
-
-* Closed tidyverse/dplyr#6154: Values from an `actionButton()` had S3 classes in the incorrect order.
 
 shiny 1.7.1
 ===========
@@ -480,7 +518,7 @@ This is a significant release for Shiny, with a major new feature that was nearl
 
 * Removed the (ridiculously outdated) "experimental feature" tag from the reference documentation for `renderUI`. (#2036)
 
-* Addressed #1907: the `ignoreInit` argument was first added only to `observeEvent`. Later, we also added it to `eventReactive`, but forgot to update the documentation. Now done, thanks [@flo12392](https://github.com/flo12392)! (#2036)
+* Addressed #1907: the `ignoreInit` argument was first added only to `observeEvent`. Later, we also added it to `eventReactive`, but forgot to update the documentation. Now done, thanks @flo12392! (#2036)
 
 ### Bug fixes
 
@@ -494,7 +532,7 @@ This is a significant release for Shiny, with a major new feature that was nearl
 
 * Fixed #1600: URL-encoded bookmarking did not work with sliders that had dates or date-times. (#1961)
 
-* Fixed #1962: [File dragging and dropping](https://blog.rstudio.com/2017/08/15/shiny-1-0-4/) broke in the presence of jQuery version 3.0 as introduced by the [rhandsontable](https://jrowen.github.io/rhandsontable/) [htmlwidget](https://www.htmlwidgets.org/). (#2005)
+* Fixed #1962: [File dragging and dropping](https://www.rstudio.com/blog/shiny-1-0-4/) broke in the presence of jQuery version 3.0 as introduced by the [rhandsontable](https://jrowen.github.io/rhandsontable/) [htmlwidget](https://www.htmlwidgets.org/). (#2005)
 
 * Improved the error handling inside the `addResourcePath()` function, to give end users more informative error messages when the `directoryPath` argument cannot be normalized. This is especially useful for `runtime: shiny_prerendered` Rmd documents, like `learnr` tutorials. (#1968)
 

R/app_template.R

@@ -10,8 +10,7 @@
 #' 2: app.R              : Main application file
 #' 3: R/example.R        : Helper file with R code
 #' 4: R/example-module.R : Example module
-#' 5: tests/shinytest/   : Tests using the shinytest package
-#' 6: tests/testthat/    : Tests using the testthat package
+#' 5: tests/testthat/    : Tests using the testthat and shinytest2 package
 #' ```
 #'
 #' If option 1 is selected, the full example application including the
@@ -24,13 +23,11 @@
 #' |   |- example-module.R
 #' |   `- example.R
 #' `- tests
-#'     |- shinytest.R
-#'     |- shinytest
-#'     |   `- mytest.R
 #'     |- testthat.R
 #'     `- testthat
 #'         |- test-examplemodule.R
 #'         |- test-server.R
+#'         |- test-shinytest2.R
 #'         `- test-sort.R
 #' ```
 #'
@@ -45,20 +42,20 @@
 #' * `tests/` contains various tests for the application. You may
 #'   choose to use or remove any of them. They can be executed by the
 #'   [runTests()] function.
-#' * `tests/shinytest.R` is a test runner for test files in the
-#'   `tests/shinytest/` directory.
-#' * `tests/shinytest/mytest.R` is a test that uses the
-#'   [shinytest](https://rstudio.github.io/shinytest/) package to do
-#'   snapshot-based testing.
 #' * `tests/testthat.R` is a test runner for test files in the
-#'   `tests/testthat/` directory using the [testthat](https://testthat.r-lib.org/) package.
+#'   `tests/testthat/` directory using the
+#'   [shinytest2](https://rstudio.github.io/shinytest2/reference/test_app.html)
+#'   package.
 #' * `tests/testthat/test-examplemodule.R` is a test for an application's module server function.
 #' * `tests/testthat/test-server.R` is a test for the application's server code
+#' * `tests/testthat/test-shinytest2.R` is a test that uses the
+#'   [shinytest2](https://rstudio.github.io/shinytest2/) package to do
+#'   snapshot-based testing.
 #' * `tests/testthat/test-sort.R` is a test for a supporting function in the `R/` directory.
 #'
 #' @param path Path to create new shiny application template.
 #' @param examples Either one of "default", "ask", "all", or any combination of
-#'   "app", "rdir", "module", "shinytest", and "testthat". In an
+#'   "app", "rdir", "module", and "tests". In an
 #'   interactive session, "default" falls back to "ask"; in a non-interactive
 #'   session, "default" falls back to "all". With "ask", this function will
 #'   prompt the user to select which template items will be added to the new app
@@ -79,15 +76,19 @@ shinyAppTemplate <- function(path = NULL, examples = "default", dryrun = FALSE)
   # =======================================================
 
   choices <- c(
-    app       = "app.R              : Main application file",
-    rdir      = "R/example.R        : Helper file with R code",
-    module    = "R/example-module.R : Example module",
-    shinytest = "tests/shinytest/   : Tests using the shinytest package",
-    testthat  = "tests/testthat/    : Tests using the testthat package"
+    app    = "app.R              : Main application file",
+    rdir   = "R/example.R        : Helper file with R code",
+    module = "R/example-module.R : Example module",
+    tests  = "tests/testthat/    : Tests using {testthat} and {shinytest2}"
   )
 
+  # Support legacy value
+  examples[examples == "shinytest"] <- "tests"
+  examples[examples == "testthat"] <- "tests"
+  examples <- unique(examples)
+
   if (identical(examples, "default")) {
-    if (interactive()) {
+    if (rlang::is_interactive()) {
       examples <- "ask"
     } else {
       examples <- "all"
@@ -124,18 +125,8 @@ shinyAppTemplate <- function(path = NULL, examples = "default", dryrun = FALSE)
     return(invisible())
   }
 
-  if ("shinytest" %in% examples) {
-    if (!is_installed("shinytest", "1.4.0"))
-    {
-      message(
-        "The tests/shinytest directory needs shinytest 1.4.0 or later to work properly."
-      )
-      if (is_installed("shinytest")) {
-        message("You currently have shinytest ",
-                get_package_version("shinytest"), " installed.")
-      }
-
-    }
+  if ("tests" %in% examples) {
+    rlang::check_installed("shinytest2", "for {testthat} tests to work as expected")
   }
 
   # =======================================================
@@ -208,16 +199,13 @@ shinyAppTemplate <- function(path = NULL, examples = "default", dryrun = FALSE)
   }
 
   # Copy the files for a tests/ subdirectory
-  copy_test_dir <- function(name) {
+  copy_test_dir <- function() {
     files <- dir(template_path("tests"), recursive = TRUE)
-    # Note: This is not the same as using dir(pattern = "^shinytest"), since
-    # that will not match files inside of shinytest/.
-    files <- files[grepl(paste0("^", name), files)]
 
     # Filter out files that are not module files in the R directory.
     if (! "rdir" %in% examples) {
       # find all files in the testthat folder that are not module or server files
-      is_r_folder_file <- (!grepl("module|server", basename(files))) & (dirname(files) == "testthat")
+      is_r_folder_file <- !grepl("module|server|shinytest2|testthat", basename(files))
       files <- files[!is_r_folder_file]
     }
 
@@ -282,12 +270,10 @@ shinyAppTemplate <- function(path = NULL, examples = "default", dryrun = FALSE)
     copy_file(file.path("R", module_files))
   }
 
-  # tests/ dir
-  if ("shinytest" %in% examples) {
-    copy_test_dir("shinytest")
-  }
-  if ("testthat" %in% examples) {
-    copy_test_dir("testthat")
+  # tests/testthat dir
+  if ("tests" %in% examples) {
+    copy_test_dir()
   }
+
   invisible()
 }

R/bookmark-state.R

@@ -321,34 +321,38 @@ RestoreContext <- R6Class("RestoreContext",
       if (substr(queryString, 1, 1) == '?')
         queryString <- substr(queryString, 2, nchar(queryString))
 
+      # The "=" after "_inputs_" is optional. Shiny doesn't generate URLs with
+      # "=", but httr always adds "=".
+      inputs_reg <- "(^|&)_inputs_=?(&|$)"
+      values_reg <- "(^|&)_values_=?(&|$)"
 
       # Error if multiple '_inputs_' or '_values_'. This is needed because
       # strsplit won't add an entry if the search pattern is at the end of a
       # string.
-      if (length(gregexpr("(^|&)_inputs_(&|$)", queryString)[[1]]) > 1)
+      if (length(gregexpr(inputs_reg, queryString)[[1]]) > 1)
         stop("Invalid state string: more than one '_inputs_' found")
-      if (length(gregexpr("(^|&)_values_(&|$)", queryString)[[1]]) > 1)
+      if (length(gregexpr(values_reg, queryString)[[1]]) > 1)
         stop("Invalid state string: more than one '_values_' found")
 
       # Look for _inputs_ and store following content in inputStr
-      splitStr <- strsplit(queryString, "(^|&)_inputs_(&|$)")[[1]]
+      splitStr <- strsplit(queryString, inputs_reg)[[1]]
       if (length(splitStr) == 2) {
         inputStr <- splitStr[2]
         # Remove any _values_ (and content after _values_) that may come after
         # _inputs_
-        inputStr <- strsplit(inputStr, "(^|&)_values_(&|$)")[[1]][1]
+        inputStr <- strsplit(inputStr, values_reg)[[1]][1]
 
       } else {
         inputStr <- ""
       }
 
       # Look for _values_ and store following content in valueStr
-      splitStr <- strsplit(queryString, "(^|&)_values_(&|$)")[[1]]
+      splitStr <- strsplit(queryString, values_reg)[[1]]
       if (length(splitStr) == 2) {
         valueStr <- splitStr[2]
         # Remove any _inputs_ (and content after _inputs_) that may come after
         # _values_
-        valueStr <- strsplit(valueStr, "(^|&)_inputs_(&|$)")[[1]][1]
+        valueStr <- strsplit(valueStr, inputs_reg)[[1]][1]
 
       } else {
         valueStr <- ""
@@ -359,16 +363,20 @@ RestoreContext <- R6Class("RestoreContext",
       values <- parseQueryString(valueStr, nested = TRUE)
 
       valuesFromJSON <- function(vals) {
-        mapply(names(vals), vals, SIMPLIFY = FALSE,
+        varsUnparsed <- c()
+        valsParsed <- mapply(names(vals), vals, SIMPLIFY = FALSE,
           FUN = function(name, value) {
             tryCatch(
               safeFromJSON(value),
               error = function(e) {
-                stop("Failed to parse URL parameter \"", name, "\"")
+                varsUnparsed <<- c(varsUnparsed, name)
+                warning("Failed to parse URL parameter \"", name, "\"")
               }
             )
           }
         )
+        valsParsed[varsUnparsed] <- NULL
+        valsParsed
       }
 
       inputs <- valuesFromJSON(inputs)

R/bootstrap-deprecated.R

@@ -6,7 +6,7 @@
 #' @param sidebarPanel The [sidebarPanel] containing input controls
 #' @param mainPanel The [mainPanel] containing outputs
 #' @keywords internal
-#' @return A UI defintion that can be passed to the [shinyUI] function
+#' @return A UI definition that can be passed to the [shinyUI] function
 #' @export
 pageWithSidebar <- function(headerPanel,
                             sidebarPanel,

R/bootstrap-layout.R

@@ -1,4 +1,87 @@
-#' @rdname bootstrapPage
+
+#' Create a page with fluid layout
+#'
+#' Functions for creating fluid page layouts. A fluid page layout consists of
+#' rows which in turn include columns. Rows exist for the purpose of making sure
+#' their elements appear on the same line (if the browser has adequate width).
+#' Columns exist for the purpose of defining how much horizontal space within a
+#' 12-unit wide grid it's elements should occupy. Fluid pages scale their
+#' components in realtime to fill all available browser width.
+#'
+#' @param ... Elements to include within the page
+#' @param title The browser window title (defaults to the host URL of the page).
+#'   Can also be set as a side effect of the [titlePanel()] function.
+#' @inheritParams bootstrapPage
+#'
+#' @return A UI definition that can be passed to the [shinyUI] function.
+#'
+#' @details To create a fluid page use the `fluidPage` function and include
+#'   instances of `fluidRow` and [column()] within it. As an
+#'   alternative to low-level row and column functions you can also use
+#'   higher-level layout functions like [sidebarLayout()].
+#'
+#' @note See the [
+#'   Shiny-Application-Layout-Guide](https://shiny.rstudio.com/articles/layout-guide.html) for additional details on laying out fluid
+#'   pages.
+#'
+#' @family layout functions
+#' @seealso [column()]
+#'
+#' @examples
+#' ## Only run examples in interactive R sessions
+#' if (interactive()) {
+#'
+#' # Example of UI with fluidPage
+#' ui <- fluidPage(
+#'
+#'   # Application title
+#'   titlePanel("Hello Shiny!"),
+#'
+#'   sidebarLayout(
+#'
+#'     # Sidebar with a slider input
+#'     sidebarPanel(
+#'       sliderInput("obs",
+#'                   "Number of observations:",
+#'                   min = 0,
+#'                   max = 1000,
+#'                   value = 500)
+#'     ),
+#'
+#'     # Show a plot of the generated distribution
+#'     mainPanel(
+#'       plotOutput("distPlot")
+#'     )
+#'   )
+#' )
+#'
+#' # Server logic
+#' server <- function(input, output) {
+#'   output$distPlot <- renderPlot({
+#'     hist(rnorm(input$obs))
+#'   })
+#' }
+#'
+#' # Complete app with UI and server components
+#' shinyApp(ui, server)
+#'
+#'
+#' # UI demonstrating column layouts
+#' ui <- fluidPage(
+#'   title = "Hello Shiny!",
+#'   fluidRow(
+#'     column(width = 4,
+#'       "4"
+#'     ),
+#'     column(width = 3, offset = 2,
+#'       "3 offset 2"
+#'     )
+#'   )
+#' )
+#'
+#' shinyApp(ui, server = function(input, output) { })
+#' }
+#' @rdname fluidPage
 #' @export
 fluidPage <- function(..., title = NULL, theme = NULL, lang = NULL) {
   bootstrapPage(div(class = "container-fluid", ...),
@@ -8,13 +91,62 @@ fluidPage <- function(..., title = NULL, theme = NULL, lang = NULL) {
 }
 
 
-#' @rdname column
+#' @rdname fluidPage
 #' @export
 fluidRow <- function(...) {
   div(class = "row", ...)
 }
 
-#' @rdname bootstrapPage
+#' Create a page with a fixed layout
+#'
+#' Functions for creating fixed page layouts. A fixed page layout consists of
+#' rows which in turn include columns. Rows exist for the purpose of making sure
+#' their elements appear on the same line (if the browser has adequate width).
+#' Columns exist for the purpose of defining how much horizontal space within a
+#' 12-unit wide grid it's elements should occupy. Fixed pages limit their width
+#' to 940 pixels on a typical display, and 724px or 1170px on smaller and larger
+#' displays respectively.
+#'
+#' @param ... Elements to include within the container
+#' @param title The browser window title (defaults to the host URL of the page)
+#' @inheritParams bootstrapPage
+#'
+#' @return A UI definition that can be passed to the [shinyUI] function.
+#'
+#' @details To create a fixed page use the `fixedPage` function and include
+#'   instances of `fixedRow` and [column()] within it. Note that
+#'   unlike [fluidPage()], fixed pages cannot make use of higher-level
+#'   layout functions like `sidebarLayout`, rather, all layout must be done
+#'   with `fixedRow` and `column`.
+#'
+#' @note See the [
+#'   Shiny Application Layout Guide](https://shiny.rstudio.com/articles/layout-guide.html) for additional details on laying out fixed
+#'   pages.
+#'
+#' @family layout functions
+#'
+#' @seealso [column()]
+#'
+#' @examples
+#' ## Only run examples in interactive R sessions
+#' if (interactive()) {
+#'
+#' ui <- fixedPage(
+#'   title = "Hello, Shiny!",
+#'   fixedRow(
+#'     column(width = 4,
+#'       "4"
+#'     ),
+#'     column(width = 3, offset = 2,
+#'       "3 offset 2"
+#'     )
+#'   )
+#' )
+#'
+#' shinyApp(ui, server = function(input, output) { })
+#' }
+#'
+#' @rdname fixedPage
 #' @export
 fixedPage <- function(..., title = NULL, theme = NULL, lang = NULL) {
   bootstrapPage(div(class = "container", ...),
@@ -23,39 +155,28 @@ fixedPage <- function(..., title = NULL, theme = NULL, lang = NULL) {
                 lang = lang)
 }
 
-#' @rdname column
+#' @rdname fixedPage
 #' @export
 fixedRow <- function(...) {
   div(class = "row", ...)
 }
 
-#' Responsive row-column based layout
+
+#' Create a column within a UI definition
 #'
-#' Layout UI components using Bootstrap's grid layout system. Use
-#' `fluidRow()` to group elements that should appear on the same line (if the
-#' browser has adequate width) and `column()` to define how much horizontal
-#' space within a 12-unit wide grid each on of these elements should occupy. See
-#' the [layout guide](https://shiny.rstudio.com/articles/layout-guide.html) for
-#' more context and examples.
+#' Create a column for use within a  [fluidRow()] or
+#' [fixedRow()]
 #'
-#' To work properly, these functions need [Bootstrap](https://getbootstrap.com)
-#' included on the page. Since most Shiny apps use [bootstrapPage()]
-#' under-the-hood, this is usually the case, but custom page containers (i.e.,
-#' [htmlTemplate()]) may need to explicitly include [bootstrapLib()]
-#' dependencies.
-#'
-#' @param width The grid width of the column (must be between 1 and 12). When
-#'   the device width is small (e.g., the viewer is on a mobile phone), the
-#'   width is always 12. For more control over these responsive breakpoints, use
-#'   Bootstrap's grid system more directly (e.g., `fluidRow(div(class =
-#'   "col-lg-2", ...))`).
-#' @param ... UI elements (i.e., [tags]). For `fluidRow()`, `...` should be a set of `column()`s.
+#' @param width The grid width of the column (must be between 1 and 12)
+#' @param ... Elements to include within the column
 #' @param offset The number of columns to offset this column from the end of the
 #'   previous column.
 #'
-#' @return A UI element (i.e., [tags]).
+#' @return A column that can be included within a
+#'   [fluidRow()] or [fixedRow()].
 #'
-#' @seealso [fluidPage()]
+#'
+#' @seealso [fluidRow()], [fixedRow()].
 #'
 #' @examples
 #' ## Only run examples in interactive R sessions
@@ -81,10 +202,16 @@ fixedRow <- function(...) {
 #'
 #' shinyApp(ui, server)
 #'
+#'
+#'
 #' ui <- fluidPage(
 #'   fluidRow(
-#'     column(width = 4, "4"),
-#'     column(width = 3, offset = 2, "3 offset 2")
+#'     column(width = 4,
+#'       "4"
+#'     ),
+#'     column(width = 3, offset = 2,
+#'       "3 offset 2"
+#'     )
 #'   )
 #' )
 #' shinyApp(ui, server = function(input, output) { })
@@ -389,7 +516,7 @@ splitLayout <- function(..., cellWidths = NULL, cellArgs = list()) {
   children <- children[childIdx]
   count <- length(children)
 
-  if (length(cellWidths) == 0 || is.na(cellWidths)) {
+  if (length(cellWidths) == 0 || isTRUE(is.na(cellWidths))) {
     cellWidths <- sprintf("%.3f%%", 100 / count)
   }
   cellWidths <- rep(cellWidths, length.out = count)

R/bootstrap.R

@@ -1,84 +1,36 @@
 #' @include utils.R
 NULL
 
-#' Create a Bootstrap UI page container
+#' Create a Bootstrap page
 #'
-#' @description
-#' Create a user interface (UI) page container based on
-#' [Bootstrap](https://getbootstrap.com/)'s CSS and JavaScript. Most Shiny apps
-#' should use [fluidPage()] (or [navbarPage()]) to get a page container with a
-#' responsive page width, but in some cases you may want a fixed width container
-#' (`fixedPage()`) or just a bare `<body>` container (`bootstrapPage()`).
+#' Create a Shiny UI page that loads the CSS and JavaScript for
+#' [Bootstrap](https://getbootstrap.com/), and has no content in the page
+#' body (other than what you provide).
 #'
-#' Most Shiny apps make use of other Shiny UI functions for [managing
-#' layout](https://shiny.rstudio.com/articles/layout-guide.html) (e.g.,
-#' [sidebarLayout()], [fluidRow()], etc), navigation (e.g., [tabPanel()]), and
-#' other styling (e.g., [wellPanel()], [inputPanel()]).  A good portion of these
-#' Shiny UI functions require Bootstrap to work properly (so most Shiny apps
-#' should use these functions to start their UI definitions), but more advanced
-#' usage (i.e., custom HTML/CSS/JS) can avoid Bootstrap entirely by using
-#' [htmlTemplate()] and/or HTML [tags].
+#' This function is primarily intended for users who are proficient in HTML/CSS,
+#' and know how to lay out pages in Bootstrap. Most applications should use
+#' [fluidPage()] along with layout functions like
+#' [fluidRow()] and [sidebarLayout()].
 #'
-#' @param ... UI elements (i.e., [tags]).
-#' @param title The browser window title (defaults to the host URL of the page).
-#'   Can also be set as a side effect of the [titlePanel()] function.
+#' @param ... The contents of the document body.
+#' @param title The browser window title (defaults to the host URL of the page)
 #' @param theme One of the following:
 #'   * `NULL` (the default), which implies a "stock" build of Bootstrap 3.
 #'   * A [bslib::bs_theme()] object. This can be used to replace a stock
 #'   build of Bootstrap 3 with a customized version of Bootstrap 3 or higher.
 #'   * A character string pointing to an alternative Bootstrap stylesheet
 #'   (normally a css file within the www directory, e.g. `www/bootstrap.css`).
-#'   This option is here mainly for legacy reasons.
 #' @param lang ISO 639-1 language code for the HTML page, such as "en" or "ko".
-#'   This will be used as the lang in the `<html>` tag, as in `<html lang="en">`.
+#'   This will be used as the lang in the \code{<html>} tag, as in \code{<html lang="en">}.
 #'   The default (NULL) results in an empty string.
 #'
-#' @return A UI definition (i.e., a [tags] object) that can be passed to [shinyApp()].
+#' @return A UI definition that can be passed to the [shinyUI] function.
 #'
-#' @seealso [navbarPage()], [fillPage()], [column()], [tabPanel()]
+#' @note The `basicPage` function is deprecated, you should use the
+#'   [fluidPage()] function instead.
+#'
+#' @seealso [fluidPage()], [fixedPage()]
 #' @export
-#' @examples
-#'
-#' # First create some UI content.
-#' # See the layout guide to learn more about creating different layouts
-#' # https://shiny.rstudio.com/articles/layout-guide.html
-#' ui <- sidebarLayout(
-#'   sidebarPanel(sliderInput("obs", "Number of observations:", 0, 1000, 500)),
-#'   mainPanel(plotOutput("distPlot"))
-#' )
-#' server <- function(input, output) {
-#'   output$distPlot <- renderPlot(hist(rnorm(input$obs)))
-#' }
-#'
-#' # Demonstrating difference between fluidPage(), fixedPage(), bootstrapPage()
-#' if (interactive()) {
-#'   # Container width scales _fluidly_ with window size
-#'   shinyApp(fluidPage(ui), server)
-#'   # Container width changes with window size at fixed breakpoints
-#'   shinyApp(fixedPage(ui), server)
-#'   # Container width is equal to the window's width
-#'   shinyApp(bootstrapPage(ui), server)
-#' }
-#'
-#' # The default look is provided by Bootstrap 3, but {bslib} can be
-#' # used to customize the Bootstrap version and its default styling
-#' theme <- bslib::bs_theme(
-#'   version = 5,
-#'   bg = "#101010",
-#'   fg = "#FDF7F7",
-#'   primary = "#ED79F9",
-#'   base_font = bslib::font_google("Prompt"),
-#'   code_font = bslib::font_google("JetBrains Mono")
-#' )
-#' if (interactive()) {
-#'   # Call thematic::thematic_shiny(font = "auto") to automatically
-#'   # translate the theme/CSS to the R plot
-#'   shinyApp(
-#'     fluidPage(ui, theme = theme, title = "Hello Bootstrap 5"),
-#'     server
-#'   )
-#' }
-#'
 bootstrapPage <- function(..., title = NULL, theme = NULL, lang = NULL) {
 
   args <- list(
@@ -282,12 +234,14 @@ bootstrapDependency <- function(theme) {
 
 bootstrapVersion <- "3.4.1"
 
+
 #' @rdname bootstrapPage
 #' @export
 basicPage <- function(...) {
   bootstrapPage(div(class="container-fluid", list(...)))
 }
 
+
 #' Create a page that fills the window
 #'
 #' `fillPage` creates a page whose height and width always fill the
@@ -431,7 +385,7 @@ collapseSizes <- function(padding) {
 #' @inheritParams bootstrapPage
 #' @param icon Optional icon to appear on a `navbarMenu` tab.
 #'
-#' @return A UI defintion that can be passed to the [shinyUI] function.
+#' @return A UI definition that can be passed to the [shinyUI] function.
 #'
 #' @details The `navbarMenu` function can be used to create an embedded
 #'   menu within the navbar that in turns includes additional tabPanels (see

R/conditions.R

@@ -421,8 +421,17 @@ pruneStackTrace <- function(parents) {
   # Loop over the parent indices. Anything that is not parented by current_node
   # (a.k.a. last-known-good node), or is a dupe, can be discarded. Anything that
   # is kept becomes the new current_node.
+  #
+  # jcheng 2022-03-18: Two more reasons a node can be kept:
+  #   1. parent is 0
+  #   2. parent is i
+  # Not sure why either of these situations happen, but they're common when
+  # interacting with rlang/dplyr errors. See issue rstudio/shiny#3250 for repro
+  # cases.
   include <- vapply(seq_along(parents), function(i) {
-    if (!is_dupe[[i]] && parents[[i]] == current_node) {
+    if ((!is_dupe[[i]] && parents[[i]] == current_node) ||
+        parents[[i]] == 0 ||
+        parents[[i]] == i) {
       current_node <<- i
       TRUE
     } else {

R/imageutils.R

@@ -1,19 +1,14 @@
 startPNG <- function(filename, width, height, res, ...) {
-  # shiny.useragg is an experimental option that isn't officially supported or
-  # documented. It's here in the off chance that someone really wants
-  # to use ragg (say, instead of showtext, for custom font rendering).
-  # In the next shiny release, this option will likely be superseded in
-  # favor of a fully customizable graphics device option
-  if ((getOption('shiny.useragg') %||% FALSE) && is_installed("ragg")) {
-    pngfun <- ragg::agg_png
+  pngfun <- if ((getOption('shiny.useragg') %||% TRUE) && is_installed("ragg")) {
+    ragg::agg_png
   } else if (capabilities("aqua")) {
     # i.e., png(type = 'quartz')
-    pngfun <- grDevices::png
+    grDevices::png
   } else if ((getOption('shiny.usecairo') %||% TRUE) && is_installed("Cairo")) {
-    pngfun <- Cairo::CairoPNG
+    Cairo::CairoPNG
   } else {
     # i.e., png(type = 'cairo')
-    pngfun <- grDevices::png
+    grDevices::png
   }
 
   args <- rlang::list2(filename=filename, width=width, height=height, res=res, ...)
@@ -57,33 +52,31 @@ startPNG <- function(filename, width, height, res, ...) {
   grDevices::dev.cur()
 }
 
-#' Run a plotting function and save the output as a PNG
+#' Capture a plot as a PNG file.
 #'
-#' This function returns the name of the PNG file that it generates. In
-#' essence, it calls `png()`, then `func()`, then `dev.off()`.
-#' So `func` must be a function that will generate a plot when used this
-#' way.
-#'
-#' For output, it will try to use the following devices, in this order:
-#' quartz (via [grDevices::png()]), then [Cairo::CairoPNG()],
-#' and finally [grDevices::png()]. This is in order of quality of
-#' output. Notably, plain `png` output on Linux and Windows may not
-#' antialias some point shapes, resulting in poor quality output.
-#'
-#' In some cases, `Cairo()` provides output that looks worse than
-#' `png()`. To disable Cairo output for an app, use
-#' `options(shiny.usecairo=FALSE)`.
+#' The PNG graphics device used is determined in the following order:
+#'   * If the ragg package is installed (and the `shiny.useragg` is not
+#'    set to `FALSE`), then use [ragg::agg_png()].
+#'   * If a quartz device is available (i.e., `capabilities("aqua")` is
+#'    `TRUE`), then use `png(type = "quartz")`.
+#'   * If the Cairo package is installed (and the `shiny.usecairo` option
+#'    is not set to `FALSE`), then use [Cairo::CairoPNG()].
+#'   * Otherwise, use [grDevices::png()]. In this case, Linux and Windows
+#'    may not antialias some point shapes, resulting in poor quality output.
 #'
 #' @param func A function that generates a plot.
 #' @param filename The name of the output file. Defaults to a temp file with
 #'   extension `.png`.
 #' @param width Width in pixels.
 #' @param height Height in pixels.
-#' @param res Resolution in pixels per inch. This value is passed to
-#'   [grDevices::png()]. Note that this affects the resolution of PNG rendering in
+#' @param res Resolution in pixels per inch. This value is passed to the
+#'   graphics device. Note that this affects the resolution of PNG rendering in
 #'   R; it won't change the actual ppi of the browser.
-#' @param ... Arguments to be passed through to [grDevices::png()].
-#'   These can be used to set the width, height, background color, etc.
+#' @param ... Arguments to be passed through to the graphics device. These can
+#'   be used to set the width, height, background color, etc.
+#'
+#' @return A path to the newly generated PNG file.
+#'
 #' @export
 plotPNG <- function(func, filename=tempfile(fileext='.png'),
                     width=400, height=400, res=72, ...) {

R/input-file.R

@@ -23,7 +23,18 @@
 #' @param buttonLabel The label used on the button. Can be text or an HTML tag
 #'   object.
 #' @param placeholder The text to show before a file has been uploaded.
+#' @param capture What source to use for capturing image, audio or video data.
+#'   This attribute facilitates user access to a device's media capture 
+#'   mechanism, such as a camera, or microphone, from within a file upload 
+#'   control.
 #'
+#'   A value of `user` indicates that the user-facing camera and/or microphone
+#'   should be used. A value of `environment` specifies that the outward-facing
+#'   camera and/or microphone should be used.
+#'
+#'   By default on most phones, this will accept still photos or video. For
+#'   still photos only, also use `accept="image/*"`. For video only, use
+#'   `accept="video/*"`.
 #' @examples
 #' ## Only run examples in interactive R sessions
 #' if (interactive()) {
@@ -73,7 +84,8 @@
 #'
 #' @export
 fileInput <- function(inputId, label, multiple = FALSE, accept = NULL,
-  width = NULL, buttonLabel = "Browse...", placeholder = "No file selected") {
+  width = NULL, buttonLabel = "Browse...", placeholder = "No file selected",
+  capture = NULL) {
 
   restoredValue <- restoreInput(id = inputId, default = NULL)
 
@@ -101,6 +113,9 @@ fileInput <- function(inputId, label, multiple = FALSE, accept = NULL,
   if (length(accept) > 0)
     inputTag$attribs$accept <- paste(accept, collapse=',')
 
+  if (!is.null(capture)) {
+    inputTag$attribs$capture <- capture
+  }
 
   div(class = "form-group shiny-input-container",
     style = css(width = validateCssUnit(width)),

R/reactives.R

@@ -2472,11 +2472,11 @@ debounce <- function(r, millis, priority = 100, domain = getDefaultReactiveDomai
 
       # Ensure r() is called only after setting firstRun to FALSE since r()
       # may throw an error
-      r()
+      try(r(), silent = TRUE)
       return()
     }
     # This ensures r() is still tracked after firstRun
-    r()
+    try(r(), silent = TRUE)
 
     # The value (or possibly millis) changed. Start or reset the timer.
     v$when <- getDomainTimeMs(domain) + millis()
@@ -2509,7 +2509,7 @@ debounce <- function(r, millis, priority = 100, domain = getDefaultReactiveDomai
   # commenting it out and studying the unit test failure that results.
   primer <- observe({
     primer$destroy()
-    er()
+    try(er(), silent = TRUE)
   }, label = "debounce primer", domain = domain, priority = priority)
 
   er
@@ -2551,7 +2551,7 @@ throttle <- function(r, millis, priority = 100, domain = getDefaultReactiveDomai
   }
 
   # Responsible for tracking when f() changes.
-  observeEvent(r(), {
+  observeEvent(try(r(), silent = TRUE), {
     if (v$pending) {
       # In a blackout period and someone already scheduled; do nothing
     } else if (blackoutMillisLeft() > 0) {

R/render-plot.R

@@ -34,7 +34,7 @@
 #'   When rendering an inline plot, you must provide numeric values (in pixels)
 #'   to both \code{width} and \code{height}.
 #' @param res Resolution of resulting plot, in pixels per inch. This value is
-#'   passed to [grDevices::png()]. Note that this affects the resolution of PNG
+#'   passed to [plotPNG()]. Note that this affects the resolution of PNG
 #'   rendering in R; it won't change the actual ppi of the browser.
 #' @param alt Alternate text for the HTML `<img>` tag if it cannot be displayed
 #'   or viewed (i.e., the user uses a screen reader). In addition to a character
@@ -44,7 +44,7 @@
 #'   ggplot objects; for other plots, `NA` results in alt text of "Plot object".
 #'   `NULL` or `""` is not recommended because those should be limited to
 #'   decorative images.
-#' @param ... Arguments to be passed through to [grDevices::png()].
+#' @param ... Arguments to be passed through to [plotPNG()].
 #'   These can be used to set the width, height, background color, etc.
 #' @inheritParams renderUI
 #' @param execOnResize If `FALSE` (the default), then when a plot is

R/run-url.R

@@ -121,7 +121,8 @@ runGist <- function(gist, destdir = NULL, ...) {
 #' @param username GitHub username. If `repo` is of the form
 #'   `"username/repo"`, `username` will be taken from `repo`.
 #' @param ref Desired git reference. Could be a commit, tag, or branch name.
-#'   Defaults to `"master"`.
+#'   Defaults to `"HEAD"`, which means the default branch on GitHub, typically
+#'   `"main"` or `"master"`.
 #' @export
 #' @examples
 #' ## Only run this example in interactive R sessions
@@ -133,7 +134,7 @@ runGist <- function(gist, destdir = NULL, ...) {
 #'   runGitHub("shiny_example", "rstudio", subdir = "inst/shinyapp/")
 #' }
 runGitHub <- function(repo, username = getOption("github.user"),
-                      ref = "master", subdir = NULL, destdir = NULL, ...) {
+                      ref = "HEAD", subdir = NULL, destdir = NULL, ...) {
 
   if (grepl('/', repo)) {
     res <- strsplit(repo, '/')[[1]]

R/runapp.R

@@ -28,7 +28,7 @@
 #'   ports will be tried.
 #' @param launch.browser If true, the system's default web browser will be
 #'   launched automatically after the app is started. Defaults to true in
-#'   interactive sessions only. This value of this parameter can also be a
+#'   interactive sessions only. The value of this parameter can also be a
 #'   function to call with the application's URL.
 #' @param host The IPv4 address that the application should listen on. Defaults
 #'   to the `shiny.host` option, if set, or `"127.0.0.1"` if not. See

R/server.R

@@ -49,7 +49,7 @@ registerClient <- function(client) {
 #' optional `session` parameter, which is used when greater control is
 #' needed.
 #'
-#' See the [tutorial](https://rstudio.github.io/shiny/tutorial/) for more
+#' See the [tutorial](https://shiny.rstudio.com/tutorial/) for more
 #' on how to write a server function.
 #'
 #' @param func The server function for this application. See the details section
@@ -331,7 +331,7 @@ argsForServerFunc <- function(serverFunc, session) {
 getEffectiveBody <- function(func) {
   if (is.null(func))
     NULL
-  else if (isS4(func) && class(func) == "functionWithTrace")
+  else if (isS4(func) && inherits(func, "functionWithTrace"))
     body(func@original)
   else
     body(func)

R/shiny-options.R

@@ -94,6 +94,10 @@ getShinyOption <- function(name, default = NULL) {
 #'   numbers to JSON format to send to the client web browser.}
 #' \item{shiny.launch.browser (defaults to `interactive()`)}{A boolean which controls the default behavior
 #'   when an app is run. See [runApp()] for more information.}
+#' \item{shiny.mathjax.url (defaults to `"https://mathjax.rstudio.com/latest/MathJax.js"`)}{
+#'   The URL that should be used to load MathJax, via [withMathJax()].}
+#' \item{shiny.mathjax.config (defaults to `"config=TeX-AMS-MML_HTMLorMML"`)}{The querystring
+#'   used to load MathJax, via [withMathJax()].}
 #' \item{shiny.maxRequestSize (defaults to 5MB)}{This is a number which specifies the maximum
 #'   web request size, which serves as a size limit for file uploads.}
 #' \item{shiny.minified (defaults to `TRUE`)}{By default
@@ -125,6 +129,9 @@ getShinyOption <- function(name, default = NULL) {
 #'   console.}
 #' \item{shiny.testmode (defaults to `FALSE`)}{If `TRUE`, then various features for testing Shiny
 #'   applications are enabled.}
+#' \item{shiny.snapshotsortc (defaults to `FALSE`)}{If `TRUE`, test snapshot keys
+#'   for \pkg{shinytest} will be sorted consistently using the C locale.  Snapshots
+#'   retrieved by \pkg{shinytest2} will always sort using the C locale.}
 #' \item{shiny.trace (defaults to `FALSE`)}{Print messages sent between the R server and the web
 #'   browser client to the R console. This is useful for debugging. Possible
 #'   values are `"send"` (only print messages sent to the client),
@@ -133,9 +140,10 @@ getShinyOption <- function(name, default = NULL) {
 #'   messages).}
 #' \item{shiny.autoload.r (defaults to `TRUE`)}{If `TRUE`, then the R/
 #'   of a shiny app will automatically be sourced.}
-#' \item{shiny.usecairo (defaults to `TRUE`)}{This is used to disable graphical rendering by the
-#'   Cairo package, if it is installed. See [plotPNG()] for more
-#'   information.}
+#' \item{shiny.useragg (defaults to `TRUE`)}{Set to `FALSE` to prevent PNG rendering via the
+#'   ragg package. See [plotPNG()] for more information.}
+#' \item{shiny.usecairo (defaults to `TRUE`)}{Set to `FALSE` to prevent PNG rendering via the
+#'   Cairo package. See [plotPNG()] for more information.}
 #' \item{shiny.devmode (defaults to `NULL`)}{Option to enable Shiny Developer Mode. When set,
 #'   different default `getOption(key)` values will be returned. See [devmode()] for more details.}
 ### Not documenting as 'shiny.devmode.verbose' is for niche use only

R/shiny.R

@@ -185,9 +185,11 @@ workerId <- local({
 #'   session is actually connected.
 #' }
 #' \item{request}{
-#'   An environment that implements the Rook specification for HTTP requests.
-#'   This is the request that was used to initiate the websocket connection
-#'   (as opposed to the request that downloaded the web page for the app).
+#'   An environment that implements the [Rook
+#'   specification](https://github.com/jeffreyhorner/Rook#the-environment) for
+#'   HTTP requests. This is the request that was used to initiate the websocket
+#'   connection (as opposed to the request that downloaded the web page for the
+#'   app).
 #' }
 #' \item{userData}{
 #'   An environment for app authors and module/package authors to store whatever
@@ -478,6 +480,35 @@ ShinySession <- R6Class(
           # "json" unless requested otherwise. The only other valid value is
           # "rds".
           format <- params$format %||% "json"
+          # Machines can test their snapshot under different locales.
+          # R CMD check runs under the `C` locale.
+          # However, before this parameter, existing snapshots were most likely not
+          #   under the `C` locale is would cause failures. This parameter allows
+          #   users to opt-in to the `C` locale.
+          # From ?sort:
+          #   However, there are some caveats with the radix sort:
+          #     If ‘x’ is a ‘character’ vector, all elements must share the
+          #   same encoding. Only UTF-8 (including ASCII) and Latin-1
+          #   encodings are supported. Collation always follows the "C"
+          #   locale.
+          # {shinytest2} will always set `sortC=1`
+          # {shinytest} does not have `sortC` functionality.
+          #    Users should set `options(shiny.snapshotsortc = TRUE)` within their app.
+          # The sortingMethod should always be `radix` going forward.
+          sortMethod <-
+            if (!is.null(params$sortC)) {
+              if (params$sortC != "1") {
+                stop("The `sortC` parameter can only be `1` or not supplied")
+              }
+              "radix"
+            } else {
+              # Allow users to set an option for {shinytest2}.
+              if (isTRUE(getShinyOption("snapshotsortc", default = FALSE))) {
+                "radix"
+              } else {
+                "auto"
+              }
+            }
 
           values <- list()
 
@@ -520,7 +551,7 @@ ShinySession <- R6Class(
               }
             )
 
-            values$input <- sortByName(values$input)
+            values$input <- sortByName(values$input, method = sortMethod)
           }
 
           if (!is.null(params$output)) {
@@ -548,7 +579,7 @@ ShinySession <- R6Class(
               }
             )
 
-            values$output <- sortByName(values$output)
+            values$output <- sortByName(values$output, method = sortMethod)
           }
 
           if (!is.null(params$export)) {
@@ -569,7 +600,7 @@ ShinySession <- R6Class(
               )
             }
 
-            values$export <- sortByName(values$export)
+            values$export <- sortByName(values$export, method = sortMethod)
           }
 
           # Make sure input, output, and export are all named lists (at this
@@ -1719,7 +1750,7 @@ ShinySession <- R6Class(
     },
 
     getTestSnapshotUrl = function(input = TRUE, output = TRUE, export = TRUE,
-                                  format = "json") {
+                                  format = "json", sortC = FALSE) {
       reqString <- function(group, value) {
         if (isTRUE(value))
           paste0(group, "=1")
@@ -1733,6 +1764,7 @@ ShinySession <- R6Class(
         reqString("input", input),
         reqString("output", output),
         reqString("export", export),
+        reqString("sortC", sortC),
         paste0("format=", format),
         sep = "&"
       )

R/shinyapp.R

@@ -286,7 +286,7 @@ shinyAppDir_serverR <- function(appDir, options=list()) {
 #
 # The return value is a function that halts monitoring when called.
 initAutoReloadMonitor <- function(dir) {
-  if (!getOption("shiny.autoreload", FALSE)) {
+  if (!get_devmode_option("shiny.autoreload", FALSE)) {
     return(function(){})
   }
 
@@ -339,7 +339,7 @@ initAutoReloadMonitor <- function(dir) {
 #' @param appDir The application directory. If `appDir` is `NULL` or
 #'   not supplied, the nearest enclosing directory that is a Shiny app, starting
 #'   with the current directory, is used.
-#' @param renv The environmeny in which the files in the `R/` directory should
+#' @param renv The environment in which the files in the `R/` directory should
 #'   be evaluated.
 #' @param globalrenv The environment in which `global.R` should be evaluated. If
 #'   `NULL`, `global.R` will not be evaluated at all.

R/shinyui.R

@@ -14,7 +14,11 @@ NULL
 #' # now we can just write "static" content without withMathJax()
 #' div("more math here $$\\sqrt{2}$$")
 withMathJax <- function(...) {
-  path <- 'https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'
+  path <- paste0(
+    getOption("shiny.mathjax.url", "https://mathjax.rstudio.com/latest/MathJax.js"),
+    "?",
+    getOption("shiny.mathjax.config", "config=TeX-AMS-MML_HTMLorMML")
+  )
   tagList(
     tags$head(
       singleton(tags$script(src = path, type = 'text/javascript'))

R/shinywrappers.R

@@ -778,9 +778,9 @@ renderUI <- function(expr, env = parent.frame(), quoted = FALSE,
 #'   function.)
 #' @param contentType A string of the download's
 #'   [content type](https://en.wikipedia.org/wiki/Internet_media_type), for
-#'   example `"text/csv"` or `"image/png"`. If `NULL` or
-#'   `NA`, the content type will be guessed based on the filename
-#'   extension, or `application/octet-stream` if the extension is unknown.
+#'   example `"text/csv"` or `"image/png"`. If `NULL`, the content type 
+#'   will be guessed based on the filename extension, or 
+#'   `application/octet-stream` if the extension is unknown.
 #' @param outputArgs A list of arguments to be passed through to the implicit
 #'   call to [downloadButton()] when `downloadHandler` is used
 #'   in an interactive R Markdown document.
@@ -810,7 +810,7 @@ renderUI <- function(expr, env = parent.frame(), quoted = FALSE,
 #' shinyApp(ui, server)
 #' }
 #' @export
-downloadHandler <- function(filename, content, contentType=NA, outputArgs=list()) {
+downloadHandler <- function(filename, content, contentType=NULL, outputArgs=list()) {
   renderFunc <- function(shinysession, name, ...) {
     shinysession$registerDownload(name, filename, contentType, content)
   }

R/utils.R

@@ -162,7 +162,7 @@ mergeVectors <- function(a, b) {
 # Sort a vector by the names of items. If there are multiple items with the
 # same name, preserve the original order of those items. For empty
 # vectors/lists/NULL, return the original value.
-sortByName <- function(x) {
+sortByName <- function(x, method = "auto") {
   if (any_unnamed(x))
     stop("All items must be named")
 
@@ -170,7 +170,19 @@ sortByName <- function(x) {
   if (length(x) == 0)
     return(x)
 
-  x[order(names(x))]
+  # Must provide consistent sort order
+  #  https://github.com/rstudio/shinytest/issues/409
+  # Using a flag in the snapshot url to determine the method
+  # `method="radix"` uses `C` locale, which is consistent across platforms
+  # Even if two platforms share `en_us.UTF-8`, they may not sort consistently
+  #  https://blog.zhimingwang.org/macos-lc_collate-hunt
+  #  (macOS) $ LC_ALL=en_US.UTF-8 sort <<<$'python-dev\npython3-dev'
+  #  python-dev
+  #  python3-dev
+  #  (Linux) $ LC_ALL=en_US.UTF-8 sort <<<$'python-dev\npython3-dev'
+  #  python3-dev
+  #  python-dev
+  x[order(names(x), method = method)]
 }
 
 # Sort a vector. If a character vector, sort using C locale, which is consistent

README.md

@@ -16,7 +16,7 @@ Easily build rich and productive interactive web apps in R — no HTML/CSS/J
 * A prebuilt set of highly sophisticated, customizable, and easy-to-use widgets (e.g., plots, tables, sliders, dropdowns, date pickers, and more).
 * An attractive default look based on [Bootstrap](https://getbootstrap.com/) which can also be easily customized with the [bslib](https://github.com/rstudio/bslib) package or avoided entirely with more direct R bindings to HTML/CSS/JavaScript.
 * Seamless integration with [R Markdown](https://shiny.rstudio.com/articles/interactive-docs.html), making it easy to embed numerous applications natively within a larger dynamic document.
-* Tools for improving and monitoring performance, including native support for [async programming](https://blog.rstudio.com/2018/06/26/shiny-1-1-0/), [caching](https://talks.cpsievert.me/20201117), [load testing](https://rstudio.github.io/shinyloadtest/), and [more](https://support.rstudio.com/hc/en-us/articles/231874748-Scaling-and-Performance-Tuning-in-RStudio-Connect).
+* Tools for improving and monitoring performance, including native support for [async programming](https://www.rstudio.com/blog/shiny-1-1-0/), [caching](https://talks.cpsievert.me/20201117), [load testing](https://rstudio.github.io/shinyloadtest/), and more.
 * [Modules](https://shiny.rstudio.com/articles/modules.html): a framework for reducing code duplication and complexity.
 * An ability to [bookmark application state](https://shiny.rstudio.com/articles/bookmarking-state.html) and/or [generate code to reproduce output(s)](https://github.com/rstudio/shinymeta).
 * A rich ecosystem of extension packages for more [custom widgets](http://www.htmlwidgets.org/), [input validation](https://github.com/rstudio/shinyvalidate), [unit testing](https://github.com/rstudio/shinytest), and more.

inst/app_template/tests/shinytest.R

@@ -1,2 +0,0 @@
-library(shinytest)
-expect_pass(testApp("../", suffix = osName()))

inst/app_template/tests/shinytest/mytest.R

@@ -1,12 +0,0 @@
-app <- ShinyDriver$new("../../")
-app$snapshotInit("mytest")
-
-app$snapshot()
-{{
-if (isTRUE(module)) {
-'
-app$setInputs(`examplemodule1-button` = "click")
-app$setInputs(`examplemodule1-button` = "click")
-app$snapshot()'
-}
-}}

inst/app_template/tests/testthat.R

@@ -1,9 +1 @@
-library(testthat)
-
-test_dir(
-  "./testthat",
-  # Run in the app's environment containing all support methods.
-  env = shiny::loadSupport(),
-  # Display the regular progress output and throw an error if any test error is found
-  reporter = c("progress", "fail")
-)
+shinytest2::test_app()

inst/app_template/tests/testthat/test-server.R

@@ -14,5 +14,4 @@ if (isTRUE(rdir)) {
   expect_equal(output$sequence, "1 2 3 4 5 6 7 8 9 10 11 12")
 '
 }
-}}
-})
+}}})

inst/app_template/tests/testthat/test-shinytest2.R

@@ -0,0 +1,18 @@
+library(shinytest2)
+
+test_that("Initial snapshot values are consistent", {
+  app <- AppDriver$new(name = "init")
+  app$expect_values()
+}){{
+if (isTRUE(module)) {
+HTML('
+
+
+test_that("Module values are consistent", {
+  app <- AppDriver$new(name = "mod")
+  app$click("examplemodule1-button")
+  app$click("examplemodule1-button")
+  app$expect_values()
+})')
+}
+}}

inst/www/shared/shiny-showcase.css

@@ -1,2 +1,2 @@
-/*! shiny 1.7.1.9002 | (c) 2012-2022 RStudio, PBC. | License: GPL-3 | file LICENSE */
+/*! shiny 1.7.2.9000 | (c) 2012-2022 RStudio, PBC. | License: GPL-3 | file LICENSE */
 #showcase-well{border-radius:0}.shiny-code{background-color:#fff;margin-bottom:0}.shiny-code code{font-family:Menlo,Consolas,"Courier New",monospace}.shiny-code-container{margin-top:20px;clear:both}.shiny-code-container h3{display:inline;margin-right:15px}.showcase-header{font-size:16px;font-weight:normal}.showcase-code-link{text-align:right;padding:15px}#showcase-app-container{vertical-align:top}#showcase-code-tabs{margin-right:15px}#showcase-code-tabs pre{border:none;line-height:1em}#showcase-code-tabs .nav{margin-bottom:0}#showcase-code-tabs ul{margin-bottom:0}#showcase-code-tabs .tab-content{border-style:solid;border-color:#e5e5e5;border-width:0px 1px 1px 1px;overflow:auto;border-bottom-right-radius:4px;border-bottom-left-radius:4px}#showcase-app-code{width:100%}#showcase-code-position-toggle{float:right}#showcase-sxs-code{padding-top:20px;vertical-align:top}.showcase-code-license{display:block;text-align:right}#showcase-code-content pre{background-color:#fff}

inst/www/shared/shiny-testmode.js

@@ -1,3 +1,3 @@
-/*! shiny 1.7.1.9002 | (c) 2012-2022 RStudio, PBC. | License: GPL-3 | file LICENSE */
+/*! shiny 1.7.2.9000 | (c) 2012-2022 RStudio, PBC. | License: GPL-3 | file LICENSE */
 (function(){var a=eval;window.addEventListener("message",function(i){var e=i.data;e.code&&a(e.code)});})();
-//# sourceMappingURL=data:application/json;base64,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
+//# sourceMappingURL=shiny-testmode.js.map

inst/www/shared/shiny-testmode.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../../../srcts/src/utils/eval.ts", "../../../srcts/extras/shiny-testmode.ts"],
+  "sourcesContent": ["//esbuild.github.io/content-types/#direct-eval\n//tl/dr;\n// * Direct usage of `eval(\"x\")` is bad with bundled code.\n// * Instead, use indirect calls to `eval` such as `indirectEval(\"x\")`\n//   * Even just renaming the function works well enough.\n// > This is known as \"indirect eval\" because eval is not being called directly, and so does not trigger the grammatical special case for direct eval in the JavaScript VM. You can call indirect eval using any syntax at all except for an expression of the exact form eval('x'). For example, var eval2 = eval; eval2('x') and [eval][0]('x') and window.eval('x') are all indirect eval calls.\n// > When you use indirect eval, the code is evaluated in the global scope instead of in the inline scope of the caller.\nvar indirectEval = eval;\nexport { indirectEval };", "/* eslint-disable unicorn/filename-case */\nimport { indirectEval } from \"../src/utils/eval\"; // Listen for messages from parent frame. This file is only added when the\n// shiny.testmode option is TRUE.\n\nwindow.addEventListener(\"message\", function (e) {\n  var message = e.data;\n  if (message.code) indirectEval(message.code);\n});"],
+  "mappings": ";YAOA,GAAI,GAAe,KCHnB,OAAO,iBAAiB,UAAW,SAAU,EAAG,CAC9C,GAAI,GAAU,EAAE,KAChB,AAAI,EAAQ,MAAM,EAAa,EAAQ",
+  "names": []
+}

man/MockShinySession.Rd

@@ -85,40 +85,40 @@ user. Always \code{NULL} for a \code{MockShinySesion}.}
 \section{Methods}{
 \subsection{Public methods}{
 \itemize{
-\item \href{#method-new}{\code{MockShinySession$new()}}
-\item \href{#method-onFlush}{\code{MockShinySession$onFlush()}}
-\item \href{#method-onFlushed}{\code{MockShinySession$onFlushed()}}
-\item \href{#method-onEnded}{\code{MockShinySession$onEnded()}}
-\item \href{#method-isEnded}{\code{MockShinySession$isEnded()}}
-\item \href{#method-isClosed}{\code{MockShinySession$isClosed()}}
-\item \href{#method-close}{\code{MockShinySession$close()}}
-\item \href{#method-cycleStartAction}{\code{MockShinySession$cycleStartAction()}}
-\item \href{#method-fileUrl}{\code{MockShinySession$fileUrl()}}
-\item \href{#method-setInputs}{\code{MockShinySession$setInputs()}}
-\item \href{#method-.scheduleTask}{\code{MockShinySession$.scheduleTask()}}
-\item \href{#method-elapse}{\code{MockShinySession$elapse()}}
-\item \href{#method-.now}{\code{MockShinySession$.now()}}
-\item \href{#method-defineOutput}{\code{MockShinySession$defineOutput()}}
-\item \href{#method-getOutput}{\code{MockShinySession$getOutput()}}
-\item \href{#method-ns}{\code{MockShinySession$ns()}}
-\item \href{#method-flushReact}{\code{MockShinySession$flushReact()}}
-\item \href{#method-makeScope}{\code{MockShinySession$makeScope()}}
-\item \href{#method-setEnv}{\code{MockShinySession$setEnv()}}
-\item \href{#method-setReturned}{\code{MockShinySession$setReturned()}}
-\item \href{#method-getReturned}{\code{MockShinySession$getReturned()}}
-\item \href{#method-genId}{\code{MockShinySession$genId()}}
-\item \href{#method-rootScope}{\code{MockShinySession$rootScope()}}
-\item \href{#method-unhandledError}{\code{MockShinySession$unhandledError()}}
-\item \href{#method-freezeValue}{\code{MockShinySession$freezeValue()}}
-\item \href{#method-onSessionEnded}{\code{MockShinySession$onSessionEnded()}}
-\item \href{#method-registerDownload}{\code{MockShinySession$registerDownload()}}
-\item \href{#method-getCurrentOutputInfo}{\code{MockShinySession$getCurrentOutputInfo()}}
-\item \href{#method-clone}{\code{MockShinySession$clone()}}
+\item \href{#method-MockShinySession-new}{\code{MockShinySession$new()}}
+\item \href{#method-MockShinySession-onFlush}{\code{MockShinySession$onFlush()}}
+\item \href{#method-MockShinySession-onFlushed}{\code{MockShinySession$onFlushed()}}
+\item \href{#method-MockShinySession-onEnded}{\code{MockShinySession$onEnded()}}
+\item \href{#method-MockShinySession-isEnded}{\code{MockShinySession$isEnded()}}
+\item \href{#method-MockShinySession-isClosed}{\code{MockShinySession$isClosed()}}
+\item \href{#method-MockShinySession-close}{\code{MockShinySession$close()}}
+\item \href{#method-MockShinySession-cycleStartAction}{\code{MockShinySession$cycleStartAction()}}
+\item \href{#method-MockShinySession-fileUrl}{\code{MockShinySession$fileUrl()}}
+\item \href{#method-MockShinySession-setInputs}{\code{MockShinySession$setInputs()}}
+\item \href{#method-MockShinySession-.scheduleTask}{\code{MockShinySession$.scheduleTask()}}
+\item \href{#method-MockShinySession-elapse}{\code{MockShinySession$elapse()}}
+\item \href{#method-MockShinySession-.now}{\code{MockShinySession$.now()}}
+\item \href{#method-MockShinySession-defineOutput}{\code{MockShinySession$defineOutput()}}
+\item \href{#method-MockShinySession-getOutput}{\code{MockShinySession$getOutput()}}
+\item \href{#method-MockShinySession-ns}{\code{MockShinySession$ns()}}
+\item \href{#method-MockShinySession-flushReact}{\code{MockShinySession$flushReact()}}
+\item \href{#method-MockShinySession-makeScope}{\code{MockShinySession$makeScope()}}
+\item \href{#method-MockShinySession-setEnv}{\code{MockShinySession$setEnv()}}
+\item \href{#method-MockShinySession-setReturned}{\code{MockShinySession$setReturned()}}
+\item \href{#method-MockShinySession-getReturned}{\code{MockShinySession$getReturned()}}
+\item \href{#method-MockShinySession-genId}{\code{MockShinySession$genId()}}
+\item \href{#method-MockShinySession-rootScope}{\code{MockShinySession$rootScope()}}
+\item \href{#method-MockShinySession-unhandledError}{\code{MockShinySession$unhandledError()}}
+\item \href{#method-MockShinySession-freezeValue}{\code{MockShinySession$freezeValue()}}
+\item \href{#method-MockShinySession-onSessionEnded}{\code{MockShinySession$onSessionEnded()}}
+\item \href{#method-MockShinySession-registerDownload}{\code{MockShinySession$registerDownload()}}
+\item \href{#method-MockShinySession-getCurrentOutputInfo}{\code{MockShinySession$getCurrentOutputInfo()}}
+\item \href{#method-MockShinySession-clone}{\code{MockShinySession$clone()}}
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-new"></a>}}
-\if{latex}{\out{\hypertarget{method-new}{}}}
+\if{html}{\out{<a id="method-MockShinySession-new"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-new}{}}}
 \subsection{Method \code{new()}}{
 Create a new MockShinySession.
 \subsection{Usage}{
@@ -127,8 +127,8 @@ Create a new MockShinySession.
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-onFlush"></a>}}
-\if{latex}{\out{\hypertarget{method-onFlush}{}}}
+\if{html}{\out{<a id="method-MockShinySession-onFlush"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-onFlush}{}}}
 \subsection{Method \code{onFlush()}}{
 Define a callback to be invoked before a reactive flush
 \subsection{Usage}{
@@ -146,8 +146,8 @@ Define a callback to be invoked before a reactive flush
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-onFlushed"></a>}}
-\if{latex}{\out{\hypertarget{method-onFlushed}{}}}
+\if{html}{\out{<a id="method-MockShinySession-onFlushed"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-onFlushed}{}}}
 \subsection{Method \code{onFlushed()}}{
 Define a callback to be invoked after a reactive flush
 \subsection{Usage}{
@@ -165,8 +165,8 @@ Define a callback to be invoked after a reactive flush
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-onEnded"></a>}}
-\if{latex}{\out{\hypertarget{method-onEnded}{}}}
+\if{html}{\out{<a id="method-MockShinySession-onEnded"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-onEnded}{}}}
 \subsection{Method \code{onEnded()}}{
 Define a callback to be invoked when the session ends
 \subsection{Usage}{
@@ -182,8 +182,8 @@ Define a callback to be invoked when the session ends
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-isEnded"></a>}}
-\if{latex}{\out{\hypertarget{method-isEnded}{}}}
+\if{html}{\out{<a id="method-MockShinySession-isEnded"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-isEnded}{}}}
 \subsection{Method \code{isEnded()}}{
 Returns \code{FALSE} if the session has not yet been closed
 \subsection{Usage}{
@@ -192,8 +192,8 @@ Returns \code{FALSE} if the session has not yet been closed
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-isClosed"></a>}}
-\if{latex}{\out{\hypertarget{method-isClosed}{}}}
+\if{html}{\out{<a id="method-MockShinySession-isClosed"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-isClosed}{}}}
 \subsection{Method \code{isClosed()}}{
 Returns \code{FALSE} if the session has not yet been closed
 \subsection{Usage}{
@@ -202,8 +202,8 @@ Returns \code{FALSE} if the session has not yet been closed
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-close"></a>}}
-\if{latex}{\out{\hypertarget{method-close}{}}}
+\if{html}{\out{<a id="method-MockShinySession-close"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-close}{}}}
 \subsection{Method \code{close()}}{
 Closes the session
 \subsection{Usage}{
@@ -212,8 +212,8 @@ Closes the session
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-cycleStartAction"></a>}}
-\if{latex}{\out{\hypertarget{method-cycleStartAction}{}}}
+\if{html}{\out{<a id="method-MockShinySession-cycleStartAction"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-cycleStartAction}{}}}
 \subsection{Method \code{cycleStartAction()}}{
 Unsophisticated mock implementation that merely invokes
 \subsection{Usage}{
@@ -229,8 +229,8 @@ Unsophisticated mock implementation that merely invokes
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-fileUrl"></a>}}
-\if{latex}{\out{\hypertarget{method-fileUrl}{}}}
+\if{html}{\out{<a id="method-MockShinySession-fileUrl"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-fileUrl}{}}}
 \subsection{Method \code{fileUrl()}}{
 Base64-encode the given file. Needed for image rendering.
 \subsection{Usage}{
@@ -250,8 +250,8 @@ Base64-encode the given file. Needed for image rendering.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-setInputs"></a>}}
-\if{latex}{\out{\hypertarget{method-setInputs}{}}}
+\if{html}{\out{<a id="method-MockShinySession-setInputs"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-setInputs}{}}}
 \subsection{Method \code{setInputs()}}{
 Sets reactive values associated with the \code{session$inputs}
 object and flushes the reactives.
@@ -280,8 +280,8 @@ session$setInputs(x=1, y=2)
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-.scheduleTask"></a>}}
-\if{latex}{\out{\hypertarget{method-.scheduleTask}{}}}
+\if{html}{\out{<a id="method-MockShinySession-.scheduleTask"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-.scheduleTask}{}}}
 \subsection{Method \code{.scheduleTask()}}{
 An internal method which shouldn't be used by others.
 Schedules \code{callback} for execution after some number of \code{millis}
@@ -301,8 +301,8 @@ milliseconds.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-elapse"></a>}}
-\if{latex}{\out{\hypertarget{method-elapse}{}}}
+\if{html}{\out{<a id="method-MockShinySession-elapse"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-elapse}{}}}
 \subsection{Method \code{elapse()}}{
 Simulate the passing of time by the given number of milliseconds.
 \subsection{Usage}{
@@ -318,8 +318,8 @@ Simulate the passing of time by the given number of milliseconds.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-.now"></a>}}
-\if{latex}{\out{\hypertarget{method-.now}{}}}
+\if{html}{\out{<a id="method-MockShinySession-.now"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-.now}{}}}
 \subsection{Method \code{.now()}}{
 An internal method which shouldn't be used by others.
 \subsection{Usage}{
@@ -331,8 +331,8 @@ Elapsed time in milliseconds.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-defineOutput"></a>}}
-\if{latex}{\out{\hypertarget{method-defineOutput}{}}}
+\if{html}{\out{<a id="method-MockShinySession-defineOutput"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-defineOutput}{}}}
 \subsection{Method \code{defineOutput()}}{
 An internal method which shouldn't be used by others.
 Defines an output in a way that sets private$currentOutputName
@@ -354,8 +354,8 @@ appropriately.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-getOutput"></a>}}
-\if{latex}{\out{\hypertarget{method-getOutput}{}}}
+\if{html}{\out{<a id="method-MockShinySession-getOutput"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-getOutput}{}}}
 \subsection{Method \code{getOutput()}}{
 An internal method which shouldn't be used by others. Forces
 evaluation of any reactive dependencies of the output function.
@@ -376,8 +376,8 @@ output.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-ns"></a>}}
-\if{latex}{\out{\hypertarget{method-ns}{}}}
+\if{html}{\out{<a id="method-MockShinySession-ns"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-ns}{}}}
 \subsection{Method \code{ns()}}{
 Returns the given id prefixed by this namespace's id.
 \subsection{Usage}{
@@ -396,8 +396,8 @@ The id with a namespace prefix.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-flushReact"></a>}}
-\if{latex}{\out{\hypertarget{method-flushReact}{}}}
+\if{html}{\out{<a id="method-MockShinySession-flushReact"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-flushReact}{}}}
 \subsection{Method \code{flushReact()}}{
 Trigger a reactive flush right now.
 \subsection{Usage}{
@@ -406,8 +406,8 @@ Trigger a reactive flush right now.
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-makeScope"></a>}}
-\if{latex}{\out{\hypertarget{method-makeScope}{}}}
+\if{html}{\out{<a id="method-MockShinySession-makeScope"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-makeScope}{}}}
 \subsection{Method \code{makeScope()}}{
 Create and return a namespace-specific session proxy.
 \subsection{Usage}{
@@ -426,8 +426,8 @@ A new session proxy.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-setEnv"></a>}}
-\if{latex}{\out{\hypertarget{method-setEnv}{}}}
+\if{html}{\out{<a id="method-MockShinySession-setEnv"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-setEnv}{}}}
 \subsection{Method \code{setEnv()}}{
 Set the environment associated with a testServer() call, but
 only if it has not previously been set. This ensures that only the
@@ -449,8 +449,8 @@ The provided \code{env}.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-setReturned"></a>}}
-\if{latex}{\out{\hypertarget{method-setReturned}{}}}
+\if{html}{\out{<a id="method-MockShinySession-setReturned"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-setReturned}{}}}
 \subsection{Method \code{setReturned()}}{
 Set the value returned by the module call and proactively
 flush. Note that this method may be called multiple times if modules
@@ -472,8 +472,8 @@ The provided \code{value}.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-getReturned"></a>}}
-\if{latex}{\out{\hypertarget{method-getReturned}{}}}
+\if{html}{\out{<a id="method-MockShinySession-getReturned"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-getReturned}{}}}
 \subsection{Method \code{getReturned()}}{
 Get the value returned by the module call.
 \subsection{Usage}{
@@ -485,8 +485,8 @@ The value returned by the module call
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-genId"></a>}}
-\if{latex}{\out{\hypertarget{method-genId}{}}}
+\if{html}{\out{<a id="method-MockShinySession-genId"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-genId}{}}}
 \subsection{Method \code{genId()}}{
 Generate a distinct character identifier for use as a proxy
 namespace.
@@ -499,8 +499,8 @@ A character identifier unique to the current session.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-rootScope"></a>}}
-\if{latex}{\out{\hypertarget{method-rootScope}{}}}
+\if{html}{\out{<a id="method-MockShinySession-rootScope"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-rootScope}{}}}
 \subsection{Method \code{rootScope()}}{
 Provides a way to access the root \code{MockShinySession} from
 any descendant proxy.
@@ -513,8 +513,8 @@ The root \code{MockShinySession}.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-unhandledError"></a>}}
-\if{latex}{\out{\hypertarget{method-unhandledError}{}}}
+\if{html}{\out{<a id="method-MockShinySession-unhandledError"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-unhandledError}{}}}
 \subsection{Method \code{unhandledError()}}{
 Called by observers when a reactive expression errors.
 \subsection{Usage}{
@@ -530,8 +530,8 @@ Called by observers when a reactive expression errors.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-freezeValue"></a>}}
-\if{latex}{\out{\hypertarget{method-freezeValue}{}}}
+\if{html}{\out{<a id="method-MockShinySession-freezeValue"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-freezeValue}{}}}
 \subsection{Method \code{freezeValue()}}{
 Freeze a value until the flush cycle completes.
 \subsection{Usage}{
@@ -549,8 +549,8 @@ Freeze a value until the flush cycle completes.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-onSessionEnded"></a>}}
-\if{latex}{\out{\hypertarget{method-onSessionEnded}{}}}
+\if{html}{\out{<a id="method-MockShinySession-onSessionEnded"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-onSessionEnded}{}}}
 \subsection{Method \code{onSessionEnded()}}{
 Registers the given callback to be invoked when the session
 is closed (i.e. the connection to the client has been severed). The
@@ -570,8 +570,8 @@ guaranteed.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-registerDownload"></a>}}
-\if{latex}{\out{\hypertarget{method-registerDownload}{}}}
+\if{html}{\out{<a id="method-MockShinySession-registerDownload"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-registerDownload}{}}}
 \subsection{Method \code{registerDownload()}}{
 Associated a downloadable file with the session.
 \subsection{Usage}{
@@ -598,8 +598,8 @@ function.)}
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-getCurrentOutputInfo"></a>}}
-\if{latex}{\out{\hypertarget{method-getCurrentOutputInfo}{}}}
+\if{html}{\out{<a id="method-MockShinySession-getCurrentOutputInfo"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-getCurrentOutputInfo}{}}}
 \subsection{Method \code{getCurrentOutputInfo()}}{
 Get information about the output that is currently being
 executed.
@@ -614,8 +614,8 @@ output, or \code{NULL} if no output is currently executing.
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-clone"></a>}}
-\if{latex}{\out{\hypertarget{method-clone}{}}}
+\if{html}{\out{<a id="method-MockShinySession-clone"></a>}}
+\if{latex}{\out{\hypertarget{method-MockShinySession-clone}{}}}
 \subsection{Method \code{clone()}}{
 The objects of this class are cloneable with this method.
 \subsection{Usage}{

man/Progress.Rd

@@ -62,19 +62,19 @@ shinyApp(ui, server)
 \section{Methods}{
 \subsection{Public methods}{
 \itemize{
-\item \href{#method-new}{\code{Progress$new()}}
-\item \href{#method-set}{\code{Progress$set()}}
-\item \href{#method-inc}{\code{Progress$inc()}}
-\item \href{#method-getMin}{\code{Progress$getMin()}}
-\item \href{#method-getMax}{\code{Progress$getMax()}}
-\item \href{#method-getValue}{\code{Progress$getValue()}}
-\item \href{#method-close}{\code{Progress$close()}}
-\item \href{#method-clone}{\code{Progress$clone()}}
+\item \href{#method-Progress-new}{\code{Progress$new()}}
+\item \href{#method-Progress-set}{\code{Progress$set()}}
+\item \href{#method-Progress-inc}{\code{Progress$inc()}}
+\item \href{#method-Progress-getMin}{\code{Progress$getMin()}}
+\item \href{#method-Progress-getMax}{\code{Progress$getMax()}}
+\item \href{#method-Progress-getValue}{\code{Progress$getValue()}}
+\item \href{#method-Progress-close}{\code{Progress$close()}}
+\item \href{#method-Progress-clone}{\code{Progress$clone()}}
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-new"></a>}}
-\if{latex}{\out{\hypertarget{method-new}{}}}
+\if{html}{\out{<a id="method-Progress-new"></a>}}
+\if{latex}{\out{\hypertarget{method-Progress-new}{}}}
 \subsection{Method \code{new()}}{
 Creates a new progress panel (but does not display it).
 \subsection{Usage}{
@@ -107,8 +107,8 @@ is for backward-compatibility).}
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-set"></a>}}
-\if{latex}{\out{\hypertarget{method-set}{}}}
+\if{html}{\out{<a id="method-Progress-set"></a>}}
+\if{latex}{\out{\hypertarget{method-Progress-set}{}}}
 \subsection{Method \code{set()}}{
 Updates the progress panel. When called the first time, the
 progress panel is displayed.
@@ -135,8 +135,8 @@ relative to \code{message}.}
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-inc"></a>}}
-\if{latex}{\out{\hypertarget{method-inc}{}}}
+\if{html}{\out{<a id="method-Progress-inc"></a>}}
+\if{latex}{\out{\hypertarget{method-Progress-inc}{}}}
 \subsection{Method \code{inc()}}{
 Like \code{set}, this updates the progress panel. The difference
 is that \code{inc} increases the progress bar by \code{amount}, instead of
@@ -163,8 +163,8 @@ relative to \code{message}.}
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-getMin"></a>}}
-\if{latex}{\out{\hypertarget{method-getMin}{}}}
+\if{html}{\out{<a id="method-Progress-getMin"></a>}}
+\if{latex}{\out{\hypertarget{method-Progress-getMin}{}}}
 \subsection{Method \code{getMin()}}{
 Returns the minimum value.
 \subsection{Usage}{
@@ -173,8 +173,8 @@ Returns the minimum value.
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-getMax"></a>}}
-\if{latex}{\out{\hypertarget{method-getMax}{}}}
+\if{html}{\out{<a id="method-Progress-getMax"></a>}}
+\if{latex}{\out{\hypertarget{method-Progress-getMax}{}}}
 \subsection{Method \code{getMax()}}{
 Returns the maximum value.
 \subsection{Usage}{
@@ -183,8 +183,8 @@ Returns the maximum value.
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-getValue"></a>}}
-\if{latex}{\out{\hypertarget{method-getValue}{}}}
+\if{html}{\out{<a id="method-Progress-getValue"></a>}}
+\if{latex}{\out{\hypertarget{method-Progress-getValue}{}}}
 \subsection{Method \code{getValue()}}{
 Returns the current value.
 \subsection{Usage}{
@@ -193,8 +193,8 @@ Returns the current value.
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-close"></a>}}
-\if{latex}{\out{\hypertarget{method-close}{}}}
+\if{html}{\out{<a id="method-Progress-close"></a>}}
+\if{latex}{\out{\hypertarget{method-Progress-close}{}}}
 \subsection{Method \code{close()}}{
 Removes the progress panel. Future calls to \code{set} and
 \code{close} will be ignored.
@@ -204,8 +204,8 @@ Removes the progress panel. Future calls to \code{set} and
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-clone"></a>}}
-\if{latex}{\out{\hypertarget{method-clone}{}}}
+\if{html}{\out{<a id="method-Progress-clone"></a>}}
+\if{latex}{\out{\hypertarget{method-Progress-clone}{}}}
 \subsection{Method \code{clone()}}{
 The objects of this class are cloneable with this method.
 \subsection{Usage}{

man/bindCache.Rd

@@ -40,7 +40,9 @@ sense, namely:
 
 In the example here, the \code{bindCache()} key consists of \code{input$x} and
 \code{input$y} combined, and the value is \code{input$x * input$y}. In this simple
-example, for any given key, there is only one possible returned value.\if{html}{\out{<div class="sourceCode NA">}}\preformatted{r <- reactive(\{ input$x * input$y \}) \%>\%
+example, for any given key, there is only one possible returned value.
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{r <- reactive(\{ input$x * input$y \}) \%>\%
   bindCache(input$x, input$y)
 }\if{html}{\out{</div>}}
 
@@ -63,7 +65,9 @@ to do some sort of reduction on the data that still captures information
 about whether a value can be retrieved from the cache. For example, if you
 have a large data set with timestamps, it might make sense to extract the
 most recent timestamp and return that. Then, instead of hashing the entire
-data object, the cached reactive only needs to hash the timestamp.\if{html}{\out{<div class="sourceCode NA">}}\preformatted{r <- reactive(\{ compute(bigdata()) \} \%>\%
+data object, the cached reactive only needs to hash the timestamp.
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{r <- reactive(\{ compute(bigdata()) \} \%>\%
   bindCache(\{ extract_most_recent_time(bigdata()) \})
 }\if{html}{\out{</div>}}
 
@@ -105,7 +109,9 @@ cache key is not too expensive.
 Remember that the key is \emph{reactive}, so it is not re-executed every single
 time that someone accesses the cached reactive. It is only re-executed if
 it has been invalidated by one of the reactives it depends on. For
-example, suppose we have this cached reactive:\if{html}{\out{<div class="sourceCode NA">}}\preformatted{r <- reactive(\{ input$x * input$y \}) \%>\%
+example, suppose we have this cached reactive:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{r <- reactive(\{ input$x * input$y \}) \%>\%
  bindCache(input$x, input$y)
 }\if{html}{\out{</div>}}
 
@@ -154,24 +160,30 @@ persists beyond the current R session.
 To use different settings for an application-scoped cache, you can call
 \code{\link[=shinyOptions]{shinyOptions()}} at the top of your app.R, server.R, or
 global.R. For example, this will create a cache with 500 MB of space
-instead of the default 200 MB:\preformatted{shinyOptions(cache = cachem::cache_mem(max_size = 500e6))
-}
+instead of the default 200 MB:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{shinyOptions(cache = cachem::cache_mem(max_size = 500e6))
+}\if{html}{\out{</div>}}
 
 To use different settings for a session-scoped cache, you can set
 \code{self$cache} at the top of your server function. By default, it will create
 a 200 MB memory cache for each session, but you can replace it with
 something different. To use the session-scoped cache, you must also call
 \code{bindCache()} with \code{cache="session"}. This will create a 100 MB cache for
-the session:\preformatted{function(input, output, session) \{
+the session:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{function(input, output, session) \{
   session$cache <- cachem::cache_mem(max_size = 100e6)
   ...
 \}
-}
+}\if{html}{\out{</div>}}
 
 If you want to use a cache that is shared across multiple R processes, you
 can use a \code{\link[cachem:cache_disk]{cachem::cache_disk()}}. You can create a application-level shared
-cache by putting this at the top of your app.R, server.R, or global.R:\preformatted{shinyOptions(cache = cachem::cache_disk(file.path(dirname(tempdir()), "myapp-cache"))
-}
+cache by putting this at the top of your app.R, server.R, or global.R:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{shinyOptions(cache = cachem::cache_disk(file.path(dirname(tempdir()), "myapp-cache"))
+}\if{html}{\out{</div>}}
 
 This will create a subdirectory in your system temp directory named
 \code{myapp-cache} (replace \code{myapp-cache} with a unique name of
@@ -181,8 +193,10 @@ stops of the R process, as long as you do not reboot.
 
 To have the cache persist even across multiple reboots, you can create the
 cache in a location outside of the temp directory. For example, it could
-be a subdirectory of the application:\preformatted{shinyOptions(cache = cachem::cache_disk("./myapp-cache"))
-}
+be a subdirectory of the application:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{shinyOptions(cache = cachem::cache_disk("./myapp-cache"))
+}\if{html}{\out{</div>}}
 
 In this case, resetting the cache will have to be done manually, by deleting
 the directory.
@@ -247,9 +261,11 @@ You may need to provide a \code{cacheHint} to \code{\link[=createRenderFunction]
 \code{htmlwidgets::shinyRenderWidget()}, if you've authored an htmlwidget) in
 order for \code{bindCache()} to correctly compute a cache key.
 
-The potential problem is a cache collision. Consider the following:\preformatted{output$x1 <- renderText(\{ input$x \}) \%>\% bindCache(input$x)
+The potential problem is a cache collision. Consider the following:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{output$x1 <- renderText(\{ input$x \}) \%>\% bindCache(input$x)
 output$x2 <- renderText(\{ input$x * 2 \}) \%>\% bindCache(input$x)
-}
+}\if{html}{\out{</div>}}
 
 Both \code{output$x1} and \code{output$x2} use \code{input$x} as part of their cache key,
 but if it were the only thing used in the cache key, then the two outputs
@@ -258,7 +274,9 @@ this, a \emph{cache hint} is automatically added when \code{\link[=renderText]{r
 \code{\link[=createRenderFunction]{createRenderFunction()}}. The cache hint is used as part of the actual
 cache key, in addition to the one passed to \code{bindCache()} by the user. The
 cache hint can be viewed by calling the internal Shiny function
-\code{extractCacheHint()}:\if{html}{\out{<div class="sourceCode NA">}}\preformatted{r <- renderText(\{ input$x \})
+\code{extractCacheHint()}:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{r <- renderText(\{ input$x \})
 shiny:::extractCacheHint(r)
 }\if{html}{\out{</div>}}
 
@@ -289,7 +307,9 @@ that may influence the final value.
 For \pkg{htmlwidgets}, it will try to automatically infer a cache hint;
 again, you can inspect the cache hint with \code{shiny:::extractCacheHint()} and
 also test it in an application. If you do need to explicitly provide a
-cache hint, pass it to \code{shinyRenderWidget}. For example:\preformatted{renderMyWidget <- function(expr) \{
+cache hint, pass it to \code{shinyRenderWidget}. For example:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{renderMyWidget <- function(expr) \{
   q <- rlang::enquo0(expr)
 
   htmlwidgets::shinyRenderWidget(
@@ -299,7 +319,7 @@ cache hint, pass it to \code{shinyRenderWidget}. For example:\preformatted{rende
     cacheHint = list(label = "myWidget", userQuo = q)
   )
 \}
-}
+}\if{html}{\out{</div>}}
 
 If your \code{render} function sets any internal state, you may find it useful
 in your call to \code{\link[=createRenderFunction]{createRenderFunction()}} to use
@@ -330,8 +350,10 @@ For developers of such code, they should call \code{\link[=createRenderFunction]
 
 When \code{bindCache()} is used with \code{renderPlot()}, the \code{height} and \code{width}
 passed to the original \code{renderPlot()} are ignored. They are superseded by
-\code{sizePolicy} argument passed to `bindCache. The default is:\preformatted{sizePolicy = sizeGrowthRatio(width = 400, height = 400, growthRate = 1.2)
-}
+\code{sizePolicy} argument passed to `bindCache. The default is:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{sizePolicy = sizeGrowthRatio(width = 400, height = 400, growthRate = 1.2)
+}\if{html}{\out{</div>}}
 
 \code{sizePolicy} must be a function that takes a two-element numeric vector as
 input, representing the width and height of the \verb{<img>} element in the

man/bindEvent.Rd

@@ -171,7 +171,9 @@ user sets both \code{x} and \code{y}, and then clicks on an \link{actionButton}
 \code{go}.
 
 To use both caching and events, the object should first be passed to
-\code{bindCache()}, then \code{bindEvent()}. For example:\if{html}{\out{<div class="sourceCode NA">}}\preformatted{r <- reactive(\{
+\code{bindCache()}, then \code{bindEvent()}. For example:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{r <- reactive(\{
    Sys.sleep(2)  # Pretend this is an expensive computation
    input$x * input$y
  \}) \%>\%

man/bootstrapLib.Rd

@@ -14,7 +14,6 @@ bootstrapLib(theme = NULL)
 build of Bootstrap 3 with a customized version of Bootstrap 3 or higher.
 \item A character string pointing to an alternative Bootstrap stylesheet
 (normally a css file within the www directory, e.g. \code{www/bootstrap.css}).
-This option is here mainly for legacy reasons.
 }}
 }
 \description{

man/bootstrapPage.Rd

@@ -1,25 +1,18 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/bootstrap-layout.R, R/bootstrap.R
-\name{fluidPage}
-\alias{fluidPage}
-\alias{fixedPage}
+% Please edit documentation in R/bootstrap.R
+\name{bootstrapPage}
 \alias{bootstrapPage}
 \alias{basicPage}
-\title{Create a Bootstrap UI page container}
+\title{Create a Bootstrap page}
 \usage{
-fluidPage(..., title = NULL, theme = NULL, lang = NULL)
-
-fixedPage(..., title = NULL, theme = NULL, lang = NULL)
-
 bootstrapPage(..., title = NULL, theme = NULL, lang = NULL)
 
 basicPage(...)
 }
 \arguments{
-\item{...}{UI elements (i.e., \link{tags}).}
+\item{...}{The contents of the document body.}
 
-\item{title}{The browser window title (defaults to the host URL of the page).
-Can also be set as a side effect of the \code{\link[=titlePanel]{titlePanel()}} function.}
+\item{title}{The browser window title (defaults to the host URL of the page)}
 
 \item{theme}{One of the following:
 \itemize{
@@ -28,74 +21,30 @@ Can also be set as a side effect of the \code{\link[=titlePanel]{titlePanel()}}
 build of Bootstrap 3 with a customized version of Bootstrap 3 or higher.
 \item A character string pointing to an alternative Bootstrap stylesheet
 (normally a css file within the www directory, e.g. \code{www/bootstrap.css}).
-This option is here mainly for legacy reasons.
 }}
 
 \item{lang}{ISO 639-1 language code for the HTML page, such as "en" or "ko".
-This will be used as the lang in the \verb{<html>} tag, as in \verb{<html lang="en">}.
+This will be used as the lang in the \code{<html>} tag, as in \code{<html lang="en">}.
 The default (NULL) results in an empty string.}
 }
 \value{
-A UI definition (i.e., a \link{tags} object) that can be passed to \code{\link[=shinyApp]{shinyApp()}}.
+A UI definition that can be passed to the \link{shinyUI} function.
 }
 \description{
-Create a user interface (UI) page container based on
-\href{https://getbootstrap.com/}{Bootstrap}'s CSS and JavaScript. Most Shiny apps
-should use \code{\link[=fluidPage]{fluidPage()}} (or \code{\link[=navbarPage]{navbarPage()}}) to get a page container with a
-responsive page width, but in some cases you may want a fixed width container
-(\code{fixedPage()}) or just a bare \verb{<body>} container (\code{bootstrapPage()}).
-
-Most Shiny apps make use of other Shiny UI functions for \href{https://shiny.rstudio.com/articles/layout-guide.html}{managing layout} (e.g.,
-\code{\link[=sidebarLayout]{sidebarLayout()}}, \code{\link[=fluidRow]{fluidRow()}}, etc), navigation (e.g., \code{\link[=tabPanel]{tabPanel()}}), and
-other styling (e.g., \code{\link[=wellPanel]{wellPanel()}}, \code{\link[=inputPanel]{inputPanel()}}).  A good portion of these
-Shiny UI functions require Bootstrap to work properly (so most Shiny apps
-should use these functions to start their UI definitions), but more advanced
-usage (i.e., custom HTML/CSS/JS) can avoid Bootstrap entirely by using
-\code{\link[=htmlTemplate]{htmlTemplate()}} and/or HTML \link{tags}.
+Create a Shiny UI page that loads the CSS and JavaScript for
+\href{https://getbootstrap.com/}{Bootstrap}, and has no content in the page
+body (other than what you provide).
 }
-\examples{
-
-# First create some UI content.
-# See the layout guide to learn more about creating different layouts
-# https://shiny.rstudio.com/articles/layout-guide.html
-ui <- sidebarLayout(
-  sidebarPanel(sliderInput("obs", "Number of observations:", 0, 1000, 500)),
-  mainPanel(plotOutput("distPlot"))
-)
-server <- function(input, output) {
-  output$distPlot <- renderPlot(hist(rnorm(input$obs)))
+\details{
+This function is primarily intended for users who are proficient in HTML/CSS,
+and know how to lay out pages in Bootstrap. Most applications should use
+\code{\link[=fluidPage]{fluidPage()}} along with layout functions like
+\code{\link[=fluidRow]{fluidRow()}} and \code{\link[=sidebarLayout]{sidebarLayout()}}.
 }
-
-# Demonstrating difference between fluidPage(), fixedPage(), bootstrapPage()
-if (interactive()) {
-  # Container width scales _fluidly_ with window size
-  shinyApp(fluidPage(ui), server)
-  # Container width changes with window size at fixed breakpoints
-  shinyApp(fixedPage(ui), server)
-  # Container width is equal to the window's width
-  shinyApp(bootstrapPage(ui), server)
-}
-
-# The default look is provided by Bootstrap 3, but {bslib} can be
-# used to customize the Bootstrap version and its default styling
-theme <- bslib::bs_theme(
-  version = 5,
-  bg = "#101010",
-  fg = "#FDF7F7",
-  primary = "#ED79F9",
-  base_font = bslib::font_google("Prompt"),
-  code_font = bslib::font_google("JetBrains Mono")
-)
-if (interactive()) {
-  # Call thematic::thematic_shiny(font = "auto") to automatically
-  # translate the theme/CSS to the R plot
-  shinyApp(
-    fluidPage(ui, theme = theme, title = "Hello Bootstrap 5"),
-    server
-  )
-}
-
+\note{
+The \code{basicPage} function is deprecated, you should use the
+\code{\link[=fluidPage]{fluidPage()}} function instead.
 }
 \seealso{
-\code{\link[=navbarPage]{navbarPage()}}, \code{\link[=fillPage]{fillPage()}}, \code{\link[=column]{column()}}, \code{\link[=tabPanel]{tabPanel()}}
+\code{\link[=fluidPage]{fluidPage()}}, \code{\link[=fixedPage]{fixedPage()}}
 }

man/column.Rd

@@ -1,45 +1,26 @@
 % Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/bootstrap-layout.R
-\name{fluidRow}
-\alias{fluidRow}
-\alias{fixedRow}
+\name{column}
 \alias{column}
-\title{Responsive row-column based layout}
+\title{Create a column within a UI definition}
 \usage{
-fluidRow(...)
-
-fixedRow(...)
-
 column(width, ..., offset = 0)
 }
 \arguments{
-\item{...}{UI elements (i.e., \link{tags}). For \code{fluidRow()}, \code{...} should be a set of \code{column()}s.}
+\item{width}{The grid width of the column (must be between 1 and 12)}
 
-\item{width}{The grid width of the column (must be between 1 and 12). When
-the device width is small (e.g., the viewer is on a mobile phone), the
-width is always 12. For more control over these responsive breakpoints, use
-Bootstrap's grid system more directly (e.g., \code{fluidRow(div(class = "col-lg-2", ...))}).}
+\item{...}{Elements to include within the column}
 
 \item{offset}{The number of columns to offset this column from the end of the
 previous column.}
 }
 \value{
-A UI element (i.e., \link{tags}).
+A column that can be included within a
+\code{\link[=fluidRow]{fluidRow()}} or \code{\link[=fixedRow]{fixedRow()}}.
 }
 \description{
-Layout UI components using Bootstrap's grid layout system. Use
-\code{fluidRow()} to group elements that should appear on the same line (if the
-browser has adequate width) and \code{column()} to define how much horizontal
-space within a 12-unit wide grid each on of these elements should occupy. See
-the \href{https://shiny.rstudio.com/articles/layout-guide.html}{layout guide} for
-more context and examples.
-}
-\details{
-To work properly, these functions need \href{https://getbootstrap.com}{Bootstrap}
-included on the page. Since most Shiny apps use \code{\link[=bootstrapPage]{bootstrapPage()}}
-under-the-hood, this is usually the case, but custom page containers (i.e.,
-\code{\link[=htmlTemplate]{htmlTemplate()}}) may need to explicitly include \code{\link[=bootstrapLib]{bootstrapLib()}}
-dependencies.
+Create a column for use within a  \code{\link[=fluidRow]{fluidRow()}} or
+\code{\link[=fixedRow]{fixedRow()}}
 }
 \examples{
 ## Only run examples in interactive R sessions
@@ -65,15 +46,21 @@ server <- function(input, output) {
 
 shinyApp(ui, server)
 
+
+
 ui <- fluidPage(
   fluidRow(
-    column(width = 4, "4"),
-    column(width = 3, offset = 2, "3 offset 2")
+    column(width = 4,
+      "4"
+    ),
+    column(width = 3, offset = 2,
+      "3 offset 2"
+    )
   )
 )
 shinyApp(ui, server = function(input, output) { })
 }
 }
 \seealso{
-\code{\link[=fluidPage]{fluidPage()}}
+\code{\link[=fluidRow]{fluidRow()}}, \code{\link[=fixedRow]{fixedRow()}}.
 }

man/createRenderFunction.Rd

@@ -125,12 +125,12 @@ function.
 }
 \section{Functions}{
 \itemize{
-\item \code{quoToFunction}: convert a quosure to a function.
+\item \code{quoToFunction()}: convert a quosure to a function.
 
-\item \code{installExprFunction}: converts a user's reactive \code{expr} into a
+\item \code{installExprFunction()}: converts a user's reactive \code{expr} into a
 function that's assigned to a \code{name} in the \code{assign.env}.
-}}
 
+}}
 \examples{
 # A custom render function that repeats the supplied value 3 times
 renderTriple <- function(expr) {

man/devmode.Rd

@@ -84,24 +84,26 @@ Please see the function descriptions for more details.
 }
 \section{Functions}{
 \itemize{
-\item \code{devmode}: Function to set two options to enable/disable Shiny
+\item \code{devmode()}: Function to set two options to enable/disable Shiny
 Developer Mode and Developer messages
 
-\item \code{in_devmode}: Determines if Shiny is in Developer Mode. If the
+\item \code{in_devmode()}: Determines if Shiny is in Developer Mode. If the
 \code{getOption("shiny.devmode")} is set to \code{TRUE} and not in testing inside
 \code{testthat}, then Shiny Developer Mode is enabled.
 
-\item \code{with_devmode}: Temporarily set Shiny Developer Mode and Developer
+\item \code{with_devmode()}: Temporarily set Shiny Developer Mode and Developer
 message verbosity
 
-\item \code{devmode_inform}: If Shiny Developer Mode and verbosity are enabled,
+\item \code{devmode_inform()}: If Shiny Developer Mode and verbosity are enabled,
 displays a message once every 8 hrs (by default)
 
-\item \code{register_devmode_option}: Registers a Shiny Developer Mode option with an updated
+\item \code{register_devmode_option()}: Registers a Shiny Developer Mode option with an updated
 value and Developer message. This registration method allows package
 authors to write one message in a single location.
 
-For example, the following Shiny Developer Mode options are registered:\if{html}{\out{<div class="sourceCode r">}}\preformatted{# Reload the Shiny app when a sourced R file changes
+For example, the following Shiny Developer Mode options are registered:
+
+\if{html}{\out{<div class="sourceCode r">}}\preformatted{# Reload the Shiny app when a sourced R file changes
 register_devmode_option(
   "shiny.autoreload",
   "Turning on shiny autoreload. To disable, call `options(shiny.autoreload = FALSE)`",
@@ -126,7 +128,9 @@ register_devmode_option(
 Other known, non-Shiny Developer Mode options:
 \itemize{
 \item Sass:
-}\if{html}{\out{<div class="sourceCode r">}}\preformatted{# Display the full stack trace when errors occur during Shiny app execution
+}
+
+\if{html}{\out{<div class="sourceCode r">}}\preformatted{# Display the full stack trace when errors occur during Shiny app execution
 register_devmode_option(
   "sass.cache",
   "Turning off sass cache. To use default caching, call `options(sass.cache = TRUE)`",
@@ -134,7 +138,7 @@ register_devmode_option(
 )
 }\if{html}{\out{</div>}}
 
-\item \code{get_devmode_option}: Provides a consistent way to change the expected
+\item \code{get_devmode_option()}: Provides a consistent way to change the expected
 \code{\link[=getOption]{getOption()}} behavior when Developer Mode is enabled. This method is very
 similar to \code{\link[=getOption]{getOption()}} where the globally set option takes precedence.
 See section "Avoiding direct dependency on shiny" for
@@ -144,8 +148,8 @@ See section "Avoiding direct dependency on shiny" for
 \code{register_devmode_option()} to avoid supplying the same \code{devmode_default}
 and \code{devmode_message} values throughout your package. (This requires a
 \pkg{shiny} dependency.)
-}}
 
+}}
 \section{Avoiding direct dependency on shiny}{
 
 
@@ -165,7 +169,9 @@ re-implementing these two functions:
 
 This function should return \code{TRUE} if \code{getOption("shiny.devmode")} is set.
 In addition, we strongly recommend that it also checks to make sure
-\code{testthat} is not testing.\if{html}{\out{<div class="sourceCode r">}}\preformatted{in_devmode <- function() \{
+\code{testthat} is not testing.
+
+\if{html}{\out{<div class="sourceCode r">}}\preformatted{in_devmode <- function() \{
   isTRUE(getOption("shiny.devmode", FALSE)) &&
     !identical(Sys.getenv("TESTTHAT"), "true")
 \}
@@ -201,7 +207,9 @@ recommend displaying a message (\code{devmode_message}) to \code{stderr()} once
 hours using \code{\link[rlang:abort]{rlang::inform()}}. This will keep the author up to date as to
 which Dev Mode options are being altered. To allow developers a chance to
 disable Dev Mode messages, the message should be skipped if
-\code{getOption("shiny.devmode.verbose", TRUE)} is not \code{TRUE}.\if{html}{\out{<div class="sourceCode r">}}\preformatted{get_devmode_option <- function(name, default = NULL, devmode_default, devmode_message) \{
+\code{getOption("shiny.devmode.verbose", TRUE)} is not \code{TRUE}.
+
+\if{html}{\out{<div class="sourceCode r">}}\preformatted{get_devmode_option <- function(name, default = NULL, devmode_default, devmode_message) \{
   if (!in_devmode()) \{
     # Dev Mode disabled, act like `getOption()`
     return(getOption(name, default = default))

man/diskCache.Rd

@@ -40,7 +40,7 @@ deleted from disk. If \code{FALSE} (the default), it will do nothing when
 finalized.}
 
 \item{missing}{A value to return when \code{get(key)} is called but the key is not
-present in the cache. The default is a \code{\link[cachem:reexports]{key_missing()}} object. It is
+present in the cache. The default is a \code{\link[cachem:key_missing]{key_missing()}} object. It is
 actually an expression that is evaluated each time there is a cache miss.
 See section Missing keys for more information.}
 

man/downloadHandler.Rd

@@ -4,7 +4,7 @@
 \alias{downloadHandler}
 \title{File Downloads}
 \usage{
-downloadHandler(filename, content, contentType = NA, outputArgs = list())
+downloadHandler(filename, content, contentType = NULL, outputArgs = list())
 }
 \arguments{
 \item{filename}{A string of the filename, including extension, that the
@@ -19,9 +19,9 @@ function.)}
 
 \item{contentType}{A string of the download's
 \href{https://en.wikipedia.org/wiki/Internet_media_type}{content type}, for
-example \code{"text/csv"} or \code{"image/png"}. If \code{NULL} or
-\code{NA}, the content type will be guessed based on the filename
-extension, or \code{application/octet-stream} if the extension is unknown.}
+example \code{"text/csv"} or \code{"image/png"}. If \code{NULL}, the content type
+will be guessed based on the filename extension, or
+\code{application/octet-stream} if the extension is unknown.}
 
 \item{outputArgs}{A list of arguments to be passed through to the implicit
 call to \code{\link[=downloadButton]{downloadButton()}} when \code{downloadHandler} is used

man/fileInput.Rd

@@ -11,7 +11,8 @@ fileInput(
   accept = NULL,
   width = NULL,
   buttonLabel = "Browse...",
-  placeholder = "No file selected"
+  placeholder = "No file selected",
+  capture = NULL
 )
 }
 \arguments{
@@ -42,6 +43,19 @@ see \code{\link[=validateCssUnit]{validateCssUnit()}}.}
 object.}
 
 \item{placeholder}{The text to show before a file has been uploaded.}
+
+\item{capture}{What source to use for capturing image, audio or video data.
+This attribute facilitates user access to a device's media capture
+mechanism, such as a camera, or microphone, from within a file upload
+control.
+
+A value of \code{user} indicates that the user-facing camera and/or microphone
+should be used. A value of \code{environment} specifies that the outward-facing
+camera and/or microphone should be used.
+
+By default on most phones, this will accept still photos or video. For
+still photos only, also use \code{accept="image/*"}. For video only, use
+\code{accept="video/*"}.}
 }
 \description{
 Create a file upload control that can be used to upload one or more files.

man/fillPage.Rd

@@ -37,11 +37,10 @@ shown in the document).}
 build of Bootstrap 3 with a customized version of Bootstrap 3 or higher.
 \item A character string pointing to an alternative Bootstrap stylesheet
 (normally a css file within the www directory, e.g. \code{www/bootstrap.css}).
-This option is here mainly for legacy reasons.
 }}
 
 \item{lang}{ISO 639-1 language code for the HTML page, such as "en" or "ko".
-This will be used as the lang in the \verb{<html>} tag, as in \verb{<html lang="en">}.
+This will be used as the lang in the \code{<html>} tag, as in \code{<html lang="en">}.
 The default (NULL) results in an empty string.}
 }
 \description{
@@ -102,7 +101,9 @@ fillPage(
 }
 \seealso{
 Other layout functions: 
+\code{\link{fixedPage}()},
 \code{\link{flowLayout}()},
+\code{\link{fluidPage}()},
 \code{\link{navbarPage}()},
 \code{\link{sidebarLayout}()},
 \code{\link{splitLayout}()},

man/fixedPage.Rd

@@ -0,0 +1,85 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/bootstrap-layout.R
+\name{fixedPage}
+\alias{fixedPage}
+\alias{fixedRow}
+\title{Create a page with a fixed layout}
+\usage{
+fixedPage(..., title = NULL, theme = NULL, lang = NULL)
+
+fixedRow(...)
+}
+\arguments{
+\item{...}{Elements to include within the container}
+
+\item{title}{The browser window title (defaults to the host URL of the page)}
+
+\item{theme}{One of the following:
+\itemize{
+\item \code{NULL} (the default), which implies a "stock" build of Bootstrap 3.
+\item A \code{\link[bslib:bs_theme]{bslib::bs_theme()}} object. This can be used to replace a stock
+build of Bootstrap 3 with a customized version of Bootstrap 3 or higher.
+\item A character string pointing to an alternative Bootstrap stylesheet
+(normally a css file within the www directory, e.g. \code{www/bootstrap.css}).
+}}
+
+\item{lang}{ISO 639-1 language code for the HTML page, such as "en" or "ko".
+This will be used as the lang in the \code{<html>} tag, as in \code{<html lang="en">}.
+The default (NULL) results in an empty string.}
+}
+\value{
+A UI definition that can be passed to the \link{shinyUI} function.
+}
+\description{
+Functions for creating fixed page layouts. A fixed page layout consists of
+rows which in turn include columns. Rows exist for the purpose of making sure
+their elements appear on the same line (if the browser has adequate width).
+Columns exist for the purpose of defining how much horizontal space within a
+12-unit wide grid it's elements should occupy. Fixed pages limit their width
+to 940 pixels on a typical display, and 724px or 1170px on smaller and larger
+displays respectively.
+}
+\details{
+To create a fixed page use the \code{fixedPage} function and include
+instances of \code{fixedRow} and \code{\link[=column]{column()}} within it. Note that
+unlike \code{\link[=fluidPage]{fluidPage()}}, fixed pages cannot make use of higher-level
+layout functions like \code{sidebarLayout}, rather, all layout must be done
+with \code{fixedRow} and \code{column}.
+}
+\note{
+See the \href{https://shiny.rstudio.com/articles/layout-guide.html}{ Shiny Application Layout Guide} for additional details on laying out fixed
+pages.
+}
+\examples{
+## Only run examples in interactive R sessions
+if (interactive()) {
+
+ui <- fixedPage(
+  title = "Hello, Shiny!",
+  fixedRow(
+    column(width = 4,
+      "4"
+    ),
+    column(width = 3, offset = 2,
+      "3 offset 2"
+    )
+  )
+)
+
+shinyApp(ui, server = function(input, output) { })
+}
+
+}
+\seealso{
+\code{\link[=column]{column()}}
+
+Other layout functions: 
+\code{\link{fillPage}()},
+\code{\link{flowLayout}()},
+\code{\link{fluidPage}()},
+\code{\link{navbarPage}()},
+\code{\link{sidebarLayout}()},
+\code{\link{splitLayout}()},
+\code{\link{verticalLayout}()}
+}
+\concept{layout functions}

man/flowLayout.Rd

@@ -34,6 +34,8 @@ shinyApp(ui, server = function(input, output) { })
 \seealso{
 Other layout functions: 
 \code{\link{fillPage}()},
+\code{\link{fixedPage}()},
+\code{\link{fluidPage}()},
 \code{\link{navbarPage}()},
 \code{\link{sidebarLayout}()},
 \code{\link{splitLayout}()},

man/fluidPage.Rd

@@ -0,0 +1,119 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/bootstrap-layout.R
+\name{fluidPage}
+\alias{fluidPage}
+\alias{fluidRow}
+\title{Create a page with fluid layout}
+\usage{
+fluidPage(..., title = NULL, theme = NULL, lang = NULL)
+
+fluidRow(...)
+}
+\arguments{
+\item{...}{Elements to include within the page}
+
+\item{title}{The browser window title (defaults to the host URL of the page).
+Can also be set as a side effect of the \code{\link[=titlePanel]{titlePanel()}} function.}
+
+\item{theme}{One of the following:
+\itemize{
+\item \code{NULL} (the default), which implies a "stock" build of Bootstrap 3.
+\item A \code{\link[bslib:bs_theme]{bslib::bs_theme()}} object. This can be used to replace a stock
+build of Bootstrap 3 with a customized version of Bootstrap 3 or higher.
+\item A character string pointing to an alternative Bootstrap stylesheet
+(normally a css file within the www directory, e.g. \code{www/bootstrap.css}).
+}}
+
+\item{lang}{ISO 639-1 language code for the HTML page, such as "en" or "ko".
+This will be used as the lang in the \code{<html>} tag, as in \code{<html lang="en">}.
+The default (NULL) results in an empty string.}
+}
+\value{
+A UI definition that can be passed to the \link{shinyUI} function.
+}
+\description{
+Functions for creating fluid page layouts. A fluid page layout consists of
+rows which in turn include columns. Rows exist for the purpose of making sure
+their elements appear on the same line (if the browser has adequate width).
+Columns exist for the purpose of defining how much horizontal space within a
+12-unit wide grid it's elements should occupy. Fluid pages scale their
+components in realtime to fill all available browser width.
+}
+\details{
+To create a fluid page use the \code{fluidPage} function and include
+instances of \code{fluidRow} and \code{\link[=column]{column()}} within it. As an
+alternative to low-level row and column functions you can also use
+higher-level layout functions like \code{\link[=sidebarLayout]{sidebarLayout()}}.
+}
+\note{
+See the \href{https://shiny.rstudio.com/articles/layout-guide.html}{ Shiny-Application-Layout-Guide} for additional details on laying out fluid
+pages.
+}
+\examples{
+## Only run examples in interactive R sessions
+if (interactive()) {
+
+# Example of UI with fluidPage
+ui <- fluidPage(
+
+  # Application title
+  titlePanel("Hello Shiny!"),
+
+  sidebarLayout(
+
+    # Sidebar with a slider input
+    sidebarPanel(
+      sliderInput("obs",
+                  "Number of observations:",
+                  min = 0,
+                  max = 1000,
+                  value = 500)
+    ),
+
+    # Show a plot of the generated distribution
+    mainPanel(
+      plotOutput("distPlot")
+    )
+  )
+)
+
+# Server logic
+server <- function(input, output) {
+  output$distPlot <- renderPlot({
+    hist(rnorm(input$obs))
+  })
+}
+
+# Complete app with UI and server components
+shinyApp(ui, server)
+
+
+# UI demonstrating column layouts
+ui <- fluidPage(
+  title = "Hello Shiny!",
+  fluidRow(
+    column(width = 4,
+      "4"
+    ),
+    column(width = 3, offset = 2,
+      "3 offset 2"
+    )
+  )
+)
+
+shinyApp(ui, server = function(input, output) { })
+}
+}
+\seealso{
+\code{\link[=column]{column()}}
+
+Other layout functions: 
+\code{\link{fillPage}()},
+\code{\link{fixedPage}()},
+\code{\link{flowLayout}()},
+\code{\link{navbarPage}()},
+\code{\link{sidebarLayout}()},
+\code{\link{splitLayout}()},
+\code{\link{verticalLayout}()}
+}
+\concept{layout functions}

man/loadSupport.Rd

@@ -15,7 +15,7 @@ loadSupport(
 not supplied, the nearest enclosing directory that is a Shiny app, starting
 with the current directory, is used.}
 
-\item{renv}{The environmeny in which the files in the \verb{R/} directory should
+\item{renv}{The environment in which the files in the \verb{R/} directory should
 be evaluated.}
 
 \item{globalrenv}{The environment in which \code{global.R} should be evaluated. If

man/memoryCache.Rd

@@ -30,7 +30,7 @@ value of \code{evict}. Use \code{Inf} for no limit of number of items.}
 when a cache pruning occurs. Currently, \code{"lru"} and \code{"fifo"} are supported.}
 
 \item{missing}{A value to return when \code{get(key)} is called but the key is not
-present in the cache. The default is a \code{\link[cachem:reexports]{key_missing()}} object. It is
+present in the cache. The default is a \code{\link[cachem:key_missing]{key_missing()}} object. It is
 actually an expression that is evaluated each time there is a cache miss.
 See section Missing keys for more information.}
 

man/navbarPage.Rd

@@ -71,7 +71,6 @@ layout.}
 build of Bootstrap 3 with a customized version of Bootstrap 3 or higher.
 \item A character string pointing to an alternative Bootstrap stylesheet
 (normally a css file within the www directory, e.g. \code{www/bootstrap.css}).
-This option is here mainly for legacy reasons.
 }}
 
 \item{windowTitle}{the browser window title (as a character string). The
@@ -80,7 +79,7 @@ default value, \code{NA}, means to use any character strings that appear in
 default).}
 
 \item{lang}{ISO 639-1 language code for the HTML page, such as "en" or "ko".
-This will be used as the lang in the \verb{<html>} tag, as in \verb{<html lang="en">}.
+This will be used as the lang in the \code{<html>} tag, as in \code{<html lang="en">}.
 The default (NULL) results in an empty string.}
 
 \item{menuName}{A name that identifies this \code{navbarMenu}. This
@@ -90,7 +89,7 @@ is needed if you want to insert/remove or show/hide an entire
 \item{icon}{Optional icon to appear on a \code{navbarMenu} tab.}
 }
 \value{
-A UI defintion that can be passed to the \link{shinyUI} function.
+A UI definition that can be passed to the \link{shinyUI} function.
 }
 \description{
 Create a page that contains a top level navigation bar that can be used to
@@ -125,7 +124,9 @@ navbarPage("App Title",
 
 Other layout functions: 
 \code{\link{fillPage}()},
+\code{\link{fixedPage}()},
 \code{\link{flowLayout}()},
+\code{\link{fluidPage}()},
 \code{\link{sidebarLayout}()},
 \code{\link{splitLayout}()},
 \code{\link{verticalLayout}()}

man/pageWithSidebar.Rd

@@ -14,7 +14,7 @@ pageWithSidebar(headerPanel, sidebarPanel, mainPanel)
 \item{mainPanel}{The \link{mainPanel} containing outputs}
 }
 \value{
-A UI defintion that can be passed to the \link{shinyUI} function
+A UI definition that can be passed to the \link{shinyUI} function
 }
 \description{
 \strong{DEPRECATED}: use \code{\link[=fluidPage]{fluidPage()}} and \code{\link[=sidebarLayout]{sidebarLayout()}} instead.

man/plotPNG.Rd

@@ -2,7 +2,7 @@
 % Please edit documentation in R/imageutils.R
 \name{plotPNG}
 \alias{plotPNG}
-\title{Run a plotting function and save the output as a PNG}
+\title{Capture a plot as a PNG file.}
 \usage{
 plotPNG(
   func,
@@ -23,27 +23,26 @@ extension \code{.png}.}
 
 \item{height}{Height in pixels.}
 
-\item{res}{Resolution in pixels per inch. This value is passed to
-\code{\link[grDevices:png]{grDevices::png()}}. Note that this affects the resolution of PNG rendering in
+\item{res}{Resolution in pixels per inch. This value is passed to the
+graphics device. Note that this affects the resolution of PNG rendering in
 R; it won't change the actual ppi of the browser.}
 
-\item{...}{Arguments to be passed through to \code{\link[grDevices:png]{grDevices::png()}}.
-These can be used to set the width, height, background color, etc.}
+\item{...}{Arguments to be passed through to the graphics device. These can
+be used to set the width, height, background color, etc.}
+}
+\value{
+A path to the newly generated PNG file.
 }
 \description{
-This function returns the name of the PNG file that it generates. In
-essence, it calls \code{png()}, then \code{func()}, then \code{dev.off()}.
-So \code{func} must be a function that will generate a plot when used this
-way.
+The PNG graphics device used is determined in the following order:
+\itemize{
+\item If the ragg package is installed (and the \code{shiny.useragg} is not
+set to \code{FALSE}), then use \code{\link[ragg:agg_png]{ragg::agg_png()}}.
+\item If a quartz device is available (i.e., \code{capabilities("aqua")} is
+\code{TRUE}), then use \code{png(type = "quartz")}.
+\item If the Cairo package is installed (and the \code{shiny.usecairo} option
+is not set to \code{FALSE}), then use \code{\link[Cairo:Cairo]{Cairo::CairoPNG()}}.
+\item Otherwise, use \code{\link[grDevices:png]{grDevices::png()}}. In this case, Linux and Windows
+may not antialias some point shapes, resulting in poor quality output.
 }
-\details{
-For output, it will try to use the following devices, in this order:
-quartz (via \code{\link[grDevices:png]{grDevices::png()}}), then \code{\link[Cairo:Cairo]{Cairo::CairoPNG()}},
-and finally \code{\link[grDevices:png]{grDevices::png()}}. This is in order of quality of
-output. Notably, plain \code{png} output on Linux and Windows may not
-antialias some point shapes, resulting in poor quality output.
-
-In some cases, \code{Cairo()} provides output that looks worse than
-\code{png()}. To disable Cairo output for an app, use
-\code{options(shiny.usecairo=FALSE)}.
 }

man/reactlog.Rd

@@ -51,11 +51,11 @@ of the source code of your reactive expressions and observers.
 }
 \section{Functions}{
 \itemize{
-\item \code{reactlog}: Return a list of reactive information.  Can be used in conjunction with
+\item \code{reactlog()}: Return a list of reactive information.  Can be used in conjunction with
 \link[reactlog:reactlog_show]{reactlog::reactlog_show} to later display the reactlog graph.
 
-\item \code{reactlogShow}: Display a full reactlog graph for all sessions.
+\item \code{reactlogShow()}: Display a full reactlog graph for all sessions.
+
+\item \code{reactlogReset()}: Resets the entire reactlog stack.  Useful for debugging and removing all prior reactive history.
 
-\item \code{reactlogReset}: Resets the entire reactlog stack.  Useful for debugging and removing all prior reactive history.
 }}
-

man/reexports.Rd

@@ -52,6 +52,6 @@ below to see their documentation.
 \describe{
   \item{fastmap}{\code{\link[fastmap:key_missing]{is.key_missing}}, \code{\link[fastmap]{key_missing}}}
 
-  \item{htmltools}{\code{\link[htmltools]{HTML}}, \code{\link[htmltools:builder]{a}}, \code{\link[htmltools:builder]{br}}, \code{\link[htmltools:builder]{code}}, \code{\link[htmltools:builder]{div}}, \code{\link[htmltools:builder]{em}}, \code{\link[htmltools:builder]{h1}}, \code{\link[htmltools:builder]{h2}}, \code{\link[htmltools:builder]{h3}}, \code{\link[htmltools:builder]{h4}}, \code{\link[htmltools:builder]{h5}}, \code{\link[htmltools:builder]{h6}}, \code{\link[htmltools:builder]{hr}}, \code{\link[htmltools]{htmlTemplate}}, \code{\link[htmltools:builder]{img}}, \code{\link[htmltools:include]{includeCSS}}, \code{\link[htmltools:include]{includeHTML}}, \code{\link[htmltools:include]{includeMarkdown}}, \code{\link[htmltools:include]{includeScript}}, \code{\link[htmltools:include]{includeText}}, \code{\link[htmltools:singleton]{is.singleton}}, \code{\link[htmltools:builder]{p}}, \code{\link[htmltools:builder]{pre}}, \code{\link[htmltools]{singleton}}, \code{\link[htmltools:builder]{span}}, \code{\link[htmltools:builder]{strong}}, \code{\link[htmltools]{suppressDependencies}}, \code{\link[htmltools:builder]{tag}}, \code{\link[htmltools]{tagAppendAttributes}}, \code{\link[htmltools]{tagAppendChild}}, \code{\link[htmltools:tagAppendChild]{tagAppendChildren}}, \code{\link[htmltools:tagAppendAttributes]{tagGetAttribute}}, \code{\link[htmltools:tagAppendAttributes]{tagHasAttribute}}, \code{\link[htmltools]{tagList}}, \code{\link[htmltools:tagAppendChild]{tagSetChildren}}, \code{\link[htmltools:builder]{tags}}, \code{\link[htmltools]{validateCssUnit}}, \code{\link[htmltools]{withTags}}}
+  \item{htmltools}{\code{\link[htmltools:builder]{a}}, \code{\link[htmltools:builder]{br}}, \code{\link[htmltools:builder]{code}}, \code{\link[htmltools:builder]{div}}, \code{\link[htmltools:builder]{em}}, \code{\link[htmltools:builder]{h1}}, \code{\link[htmltools:builder]{h2}}, \code{\link[htmltools:builder]{h3}}, \code{\link[htmltools:builder]{h4}}, \code{\link[htmltools:builder]{h5}}, \code{\link[htmltools:builder]{h6}}, \code{\link[htmltools:builder]{hr}}, \code{\link[htmltools]{HTML}}, \code{\link[htmltools]{htmlTemplate}}, \code{\link[htmltools:builder]{img}}, \code{\link[htmltools:include]{includeCSS}}, \code{\link[htmltools:include]{includeHTML}}, \code{\link[htmltools:include]{includeMarkdown}}, \code{\link[htmltools:include]{includeScript}}, \code{\link[htmltools:include]{includeText}}, \code{\link[htmltools:singleton]{is.singleton}}, \code{\link[htmltools:builder]{p}}, \code{\link[htmltools:builder]{pre}}, \code{\link[htmltools]{singleton}}, \code{\link[htmltools:builder]{span}}, \code{\link[htmltools:builder]{strong}}, \code{\link[htmltools]{suppressDependencies}}, \code{\link[htmltools:builder]{tag}}, \code{\link[htmltools]{tagAppendAttributes}}, \code{\link[htmltools]{tagAppendChild}}, \code{\link[htmltools:tagAppendChild]{tagAppendChildren}}, \code{\link[htmltools:tagAppendAttributes]{tagGetAttribute}}, \code{\link[htmltools:tagAppendAttributes]{tagHasAttribute}}, \code{\link[htmltools]{tagList}}, \code{\link[htmltools:builder]{tags}}, \code{\link[htmltools:tagAppendChild]{tagSetChildren}}, \code{\link[htmltools]{validateCssUnit}}, \code{\link[htmltools]{withTags}}}
 }}
 

man/renderCachedPlot.Rd

@@ -37,7 +37,7 @@ information on the default sizing policy.}
 (the default), \code{"session"}, or a cache object like a
 \code{\link[cachem:cache_disk]{cachem::cache_disk()}}. See the Cache Scoping section for more information.}
 
-\item{...}{Arguments to be passed through to \code{\link[grDevices:png]{grDevices::png()}}.
+\item{...}{Arguments to be passed through to \code{\link[=plotPNG]{plotPNG()}}.
 These can be used to set the width, height, background color, etc.}
 
 \item{alt}{Alternate text for the HTML \verb{<img>} tag if it cannot be displayed

man/renderPlot.Rd

@@ -35,10 +35,10 @@ When rendering an inline plot, you must provide numeric values (in pixels)
 to both \code{width} and \code{height}.}
 
 \item{res}{Resolution of resulting plot, in pixels per inch. This value is
-passed to \code{\link[grDevices:png]{grDevices::png()}}. Note that this affects the resolution of PNG
+passed to \code{\link[=plotPNG]{plotPNG()}}. Note that this affects the resolution of PNG
 rendering in R; it won't change the actual ppi of the browser.}
 
-\item{...}{Arguments to be passed through to \code{\link[grDevices:png]{grDevices::png()}}.
+\item{...}{Arguments to be passed through to \code{\link[=plotPNG]{plotPNG()}}.
 These can be used to set the width, height, background color, etc.}
 
 \item{alt}{Alternate text for the HTML \verb{<img>} tag if it cannot be displayed

man/req.Rd

@@ -25,26 +25,30 @@ nor displayed in the Shiny app's UI).
 \details{
 The \code{req} function was designed to be used in one of two ways. The first
 is to call it like a statement (ignoring its return value) before attempting
-operations using the required values:\preformatted{rv <- reactiveValues(state = FALSE)
+operations using the required values:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{rv <- reactiveValues(state = FALSE)
 r <- reactive(\{
   req(input$a, input$b, rv$state)
   # Code that uses input$a, input$b, and/or rv$state...
 \})
-}
+}\if{html}{\out{</div>}}
 
 In this example, if \code{r()} is called and any of \code{input$a},
 \code{input$b}, and \code{rv$state} are \code{NULL}, \code{FALSE}, \code{""},
 etc., then the \code{req} call will trigger an error that propagates all the
 way up to whatever render block or observer is executing.
 
-The second is to use it to wrap an expression that must be truthy:\preformatted{output$plot <- renderPlot(\{
+The second is to use it to wrap an expression that must be truthy:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{output$plot <- renderPlot(\{
   if (req(input$plotType) == "histogram") \{
     hist(dataset())
   \} else if (input$plotType == "scatter") \{
     qplot(dataset(), aes(x = x, y = y))
   \}
 \})
-}
+}\if{html}{\out{</div>}}
 
 In this example, \code{req(input$plotType)} first checks that
 \code{input$plotType} is truthy, and if so, returns it. This is a convenient

man/runApp.Rd

@@ -37,7 +37,7 @@ ports will be tried.}
 
 \item{launch.browser}{If true, the system's default web browser will be
 launched automatically after the app is started. Defaults to true in
-interactive sessions only. This value of this parameter can also be a
+interactive sessions only. The value of this parameter can also be a
 function to call with the application's URL.}
 
 \item{host}{The IPv4 address that the application should listen on. Defaults

man/runUrl.Rd

@@ -13,7 +13,7 @@ runGist(gist, destdir = NULL, ...)
 runGitHub(
   repo,
   username = getOption("github.user"),
-  ref = "master",
+  ref = "HEAD",
   subdir = NULL,
   destdir = NULL,
   ...
@@ -47,7 +47,8 @@ all valid values.}
 \code{"username/repo"}, \code{username} will be taken from \code{repo}.}
 
 \item{ref}{Desired git reference. Could be a commit, tag, or branch name.
-Defaults to \code{"master"}.}
+Defaults to \code{"HEAD"}, which means the default branch on GitHub, typically
+\code{"main"} or \code{"master"}.}
 }
 \description{
 \code{runUrl()} downloads and launches a Shiny application that is hosted at

man/session.Rd

@@ -96,9 +96,10 @@ The equivalent of hitting the browser's Reload button. Only works if the
 session is actually connected.
 }
 \item{request}{
-An environment that implements the Rook specification for HTTP requests.
-This is the request that was used to initiate the websocket connection
-(as opposed to the request that downloaded the web page for the app).
+An environment that implements the \href{https://github.com/jeffreyhorner/Rook#the-environment}{Rook specification} for
+HTTP requests. This is the request that was used to initiate the websocket
+connection (as opposed to the request that downloaded the web page for the
+app).
 }
 \item{userData}{
 An environment for app authors and module/package authors to store whatever

man/shinyAppTemplate.Rd

@@ -10,7 +10,7 @@ shinyAppTemplate(path = NULL, examples = "default", dryrun = FALSE)
 \item{path}{Path to create new shiny application template.}
 
 \item{examples}{Either one of "default", "ask", "all", or any combination of
-"app", "rdir", "module", "shinytest", and "testthat". In an
+"app", "rdir", "module", and "tests". In an
 interactive session, "default" falls back to "ask"; in a non-interactive
 session, "default" falls back to "all". With "ask", this function will
 prompt the user to select which template items will be added to the new app
@@ -25,30 +25,31 @@ This function populates a directory with files for a Shiny application.
 }
 \details{
 In an interactive R session, this function will, by default, prompt the user
-to select which components to add to the application. Choices are\preformatted{1: All
+to select which components to add to the application. Choices are
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{1: All
 2: app.R              : Main application file
 3: R/example.R        : Helper file with R code
 4: R/example-module.R : Example module
-5: tests/shinytest/   : Tests using the shinytest package
-6: tests/testthat/    : Tests using the testthat package
-}
+5: tests/testthat/    : Tests using the testthat and shinytest2 package
+}\if{html}{\out{</div>}}
 
 If option 1 is selected, the full example application including the
-following files and directories is created:\preformatted{appdir/
+following files and directories is created:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{appdir/
 |- app.R
 |- R
 |   |- example-module.R
 |   `- example.R
 `- tests
-    |- shinytest.R
-    |- shinytest
-    |   `- mytest.R
     |- testthat.R
     `- testthat
         |- test-examplemodule.R
         |- test-server.R
+        |- test-shinytest2.R
         `- test-sort.R
-}
+}\if{html}{\out{</div>}}
 
 Some notes about these files:
 \itemize{
@@ -62,15 +63,15 @@ and the second contains code for module created by the
 \item \verb{tests/} contains various tests for the application. You may
 choose to use or remove any of them. They can be executed by the
 \code{\link[=runTests]{runTests()}} function.
-\item \code{tests/shinytest.R} is a test runner for test files in the
-\verb{tests/shinytest/} directory.
-\item \code{tests/shinytest/mytest.R} is a test that uses the
-\href{https://rstudio.github.io/shinytest/}{shinytest} package to do
-snapshot-based testing.
 \item \code{tests/testthat.R} is a test runner for test files in the
-\verb{tests/testthat/} directory using the \href{https://testthat.r-lib.org/}{testthat} package.
+\verb{tests/testthat/} directory using the
+\href{https://rstudio.github.io/shinytest2/reference/test_app.html}{shinytest2}
+package.
 \item \code{tests/testthat/test-examplemodule.R} is a test for an application's module server function.
 \item \code{tests/testthat/test-server.R} is a test for the application's server code
+\item \code{tests/testthat/test-shinytest2.R} is a test that uses the
+\href{https://rstudio.github.io/shinytest2/}{shinytest2} package to do
+snapshot-based testing.
 \item \code{tests/testthat/test-sort.R} is a test for a supporting function in the \verb{R/} directory.
 }
 }

man/shinyOptions.Rd

@@ -73,6 +73,10 @@ then jQuery 3.6.0 is used.}
 numbers to JSON format to send to the client web browser.}
 \item{shiny.launch.browser (defaults to \code{interactive()})}{A boolean which controls the default behavior
 when an app is run. See \code{\link[=runApp]{runApp()}} for more information.}
+\item{shiny.mathjax.url (defaults to \code{"https://mathjax.rstudio.com/latest/MathJax.js"})}{
+The URL that should be used to load MathJax, via \code{\link[=withMathJax]{withMathJax()}}.}
+\item{shiny.mathjax.config (defaults to \code{"config=TeX-AMS-MML_HTMLorMML"})}{The querystring
+used to load MathJax, via \code{\link[=withMathJax]{withMathJax()}}.}
 \item{shiny.maxRequestSize (defaults to 5MB)}{This is a number which specifies the maximum
 web request size, which serves as a size limit for file uploads.}
 \item{shiny.minified (defaults to \code{TRUE})}{By default
@@ -104,6 +108,9 @@ should only be used for debugging or demonstrations of reactivity at the
 console.}
 \item{shiny.testmode (defaults to \code{FALSE})}{If \code{TRUE}, then various features for testing Shiny
 applications are enabled.}
+\item{shiny.snapshotsortc (defaults to \code{FALSE})}{If \code{TRUE}, test snapshot keys
+for \pkg{shinytest} will be sorted consistently using the C locale.  Snapshots
+retrieved by \pkg{shinytest2} will always sort using the C locale.}
 \item{shiny.trace (defaults to \code{FALSE})}{Print messages sent between the R server and the web
 browser client to the R console. This is useful for debugging. Possible
 values are \code{"send"} (only print messages sent to the client),
@@ -112,9 +119,10 @@ values are \code{"send"} (only print messages sent to the client),
 messages).}
 \item{shiny.autoload.r (defaults to \code{TRUE})}{If \code{TRUE}, then the R/
 of a shiny app will automatically be sourced.}
-\item{shiny.usecairo (defaults to \code{TRUE})}{This is used to disable graphical rendering by the
-Cairo package, if it is installed. See \code{\link[=plotPNG]{plotPNG()}} for more
-information.}
+\item{shiny.useragg (defaults to \code{TRUE})}{Set to \code{FALSE} to prevent PNG rendering via the
+ragg package. See \code{\link[=plotPNG]{plotPNG()}} for more information.}
+\item{shiny.usecairo (defaults to \code{TRUE})}{Set to \code{FALSE} to prevent PNG rendering via the
+Cairo package. See \code{\link[=plotPNG]{plotPNG()}} for more information.}
 \item{shiny.devmode (defaults to \code{NULL})}{Option to enable Shiny Developer Mode. When set,
 different default \code{getOption(key)} values will be returned. See \code{\link[=devmode]{devmode()}} for more details.}
 }

man/shinyServer.Rd

@@ -31,7 +31,7 @@ the Shiny application's page. It must take an \code{input} and an
 optional \code{session} parameter, which is used when greater control is
 needed.
 
-See the \href{https://rstudio.github.io/shiny/tutorial/}{tutorial} for more
+See the \href{https://shiny.rstudio.com/tutorial/}{tutorial} for more
 on how to write a server function.
 }
 \examples{

man/sidebarLayout.Rd

@@ -83,7 +83,9 @@ shinyApp(ui, server)
 \seealso{
 Other layout functions: 
 \code{\link{fillPage}()},
+\code{\link{fixedPage}()},
 \code{\link{flowLayout}()},
+\code{\link{fluidPage}()},
 \code{\link{navbarPage}()},
 \code{\link{splitLayout}()},
 \code{\link{verticalLayout}()}

man/splitLayout.Rd

@@ -64,7 +64,9 @@ shinyApp(ui, server)
 \seealso{
 Other layout functions: 
 \code{\link{fillPage}()},
+\code{\link{fixedPage}()},
 \code{\link{flowLayout}()},
+\code{\link{fluidPage}()},
 \code{\link{navbarPage}()},
 \code{\link{sidebarLayout}()},
 \code{\link{verticalLayout}()}

man/tabPanel.Rd

@@ -29,12 +29,12 @@ Create a tab panel
 }
 \section{Functions}{
 \itemize{
-\item \code{tabPanel}: Create a tab panel that can be included within a \code{\link[=tabsetPanel]{tabsetPanel()}} or a \code{\link[=navbarPage]{navbarPage()}}.
+\item \code{tabPanel()}: Create a tab panel that can be included within a \code{\link[=tabsetPanel]{tabsetPanel()}} or a \code{\link[=navbarPage]{navbarPage()}}.
 
-\item \code{tabPanelBody}: Create a tab panel that drops the title argument.
+\item \code{tabPanelBody()}: Create a tab panel that drops the title argument.
 This function should be used within \code{tabsetPanel(type = "hidden")}. See \code{\link[=tabsetPanel]{tabsetPanel()}} for example usage.
-}}
 
+}}
 \examples{
 # Show a tabset that includes a plot, summary, and
 # table view of the generated distribution

man/updateCheckboxGroupInput.Rd

@@ -33,17 +33,7 @@ types (such as logicals and numbers) will be coerced to strings.}
 
 \item{inline}{If \code{TRUE}, render the choices inline (i.e. horizontally)}
 
-\item{choiceNames}{List of names and values, respectively,
-that are displayed to the user in the app and correspond to the each
-choice (for this reason, \code{choiceNames} and \code{choiceValues}
-must have the same length). If either of these arguments is
-provided, then the other \emph{must} be provided and \code{choices}
-\emph{must not} be provided. The advantage of using both of these over
-a named list for \code{choices} is that \code{choiceNames} allows any
-type of UI object to be passed through (tag objects, icons, HTML code,
-...), instead of just simple text. See Examples.}
-
-\item{choiceValues}{List of names and values, respectively,
+\item{choiceNames, choiceValues}{List of names and values, respectively,
 that are displayed to the user in the app and correspond to the each
 choice (for this reason, \code{choiceNames} and \code{choiceValues}
 must have the same length). If either of these arguments is

man/updateRadioButtons.Rd

@@ -35,16 +35,7 @@ use \code{character(0)}.}
 
 \item{inline}{If \code{TRUE}, render the choices inline (i.e. horizontally)}
 
-\item{choiceNames}{List of names and values, respectively, that
-are displayed to the user in the app and correspond to the each choice (for
-this reason, \code{choiceNames} and \code{choiceValues} must have the same length).
-If either of these arguments is provided, then the other \emph{must} be provided
-and \code{choices} \emph{must not} be provided. The advantage of using both of these
-over a named list for \code{choices} is that \code{choiceNames} allows any type of UI
-object to be passed through (tag objects, icons, HTML code, ...), instead
-of just simple text. See Examples.}
-
-\item{choiceValues}{List of names and values, respectively, that
+\item{choiceNames, choiceValues}{List of names and values, respectively, that
 are displayed to the user in the app and correspond to the each choice (for
 this reason, \code{choiceNames} and \code{choiceValues} must have the same length).
 If either of these arguments is provided, then the other \emph{must} be provided

man/updateSliderInput.Rd

@@ -29,10 +29,7 @@ updateSliderInput(
 create a regular slider; a length two vector will create a double-ended
 range slider. Must lie between \code{min} and \code{max}.}
 
-\item{min}{The minimum and maximum values (inclusive) that can be
-selected.}
-
-\item{max}{The minimum and maximum values (inclusive) that can be
+\item{min, max}{The minimum and maximum values (inclusive) that can be
 selected.}
 
 \item{step}{Specifies the interval between each selectable value on the

man/validate.Rd

@@ -55,10 +55,12 @@ can create your own validation test functions. A passing test should return
 to display to the user, or if the failure should happen silently, \code{FALSE}.
 
 Alternatively you can use \code{validate()} within an \code{if} statement, which is
-particularly useful for more complex conditions:\preformatted{if (input$x < 0 && input$choice == "positive") \{
+particularly useful for more complex conditions:
+
+\if{html}{\out{<div class="sourceCode">}}\preformatted{if (input$x < 0 && input$choice == "positive") \{
   validate("If choice is positive then x must be greater than 0")
 \}
-}
+}\if{html}{\out{</div>}}
 }
 
 \examples{

man/varSelectInput.Rd

@@ -76,10 +76,10 @@ value when it is a single choice input and the empty string is not in the
 The resulting server \code{input} value will be returned as:
 \itemize{
 \item A symbol if \code{multiple = FALSE}. The \code{input} value should be
-used with rlang's \code{\link[rlang:nse-force]{rlang::!!()}}. For example,
+used with rlang's \code{\link[rlang:injection-operator]{rlang::!!()}}. For example,
 \code{ggplot2::aes(!!input$variable)}.
 \item A list of symbols if \code{multiple = TRUE}. The \code{input} value
-should be used with rlang's \code{\link[rlang:nse-force]{rlang::!!!()}} to expand
+should be used with rlang's \code{\link[rlang:splice-operator]{rlang::!!!()}} to expand
 the symbol list as individual arguments. For example,
 \code{dplyr::select(mtcars, !!!input$variabls)} which is
 equivalent to \code{dplyr::select(mtcars, !!input$variabls[[1]], !!input$variabls[[2]], ..., !!input$variabls[[length(input$variabls)]])}.

man/verticalLayout.Rd

@@ -33,7 +33,9 @@ shinyApp(ui, server = function(input, output) { })
 \seealso{
 Other layout functions: 
 \code{\link{fillPage}()},
+\code{\link{fixedPage}()},
 \code{\link{flowLayout}()},
+\code{\link{fluidPage}()},
 \code{\link{navbarPage}()},
 \code{\link{sidebarLayout}()},
 \code{\link{splitLayout}()}

package.json

@@ -3,7 +3,7 @@
   "homepage": "https://shiny.rstudio.com",
   "repository": "github:rstudio/shiny",
   "name": "@types/rstudio-shiny",
-  "version": "1.7.1-alpha.9002",
+  "version": "1.7.2-alpha.9000",
   "license": "GPL-3.0-only",
   "main": "",
   "browser": "",
@@ -46,7 +46,8 @@
     "@typescript-eslint/parser": "^4.25.0",
     "autoprefixer": "^10.2.6",
     "bootstrap-datepicker": "1.9.0",
-    "browserslist": "^4.16.6",
+    "browserslist": "^4.19.1",
+    "caniuse-lite": "^1.0.30001312",
     "core-js": "^3.13.0",
     "esbuild": "^0.12.4",
     "esbuild-plugin-babel": "https://github.com/schloerke/esbuild-plugin-babel#patch-2",

revdep/README.md

@@ -1,944 +1,12 @@
-# Platform
-
-|field    |value                        |
-|:--------|:----------------------------|
-|version  |R version 4.0.0 (2020-04-24) |
-|os       |macOS Catalina 10.15.5       |
-|system   |x86_64, darwin17.0           |
-|ui       |X11                          |
-|language |(EN)                         |
-|collate  |en_US.UTF-8                  |
-|ctype    |en_US.UTF-8                  |
-|tz       |America/New_York             |
-|date     |2020-06-19                   |
-
-# Dependencies
-
-|package |old     |new   |Δ  |
-|:-------|:-------|:-----|:--|
-|shiny   |1.4.0.2 |1.5.0 |*  |
-
 # Revdeps
 
-## Failed to check (3)
+## Failed to check (5)
 
-|package                                |version |error |warning |note |
-|:--------------------------------------|:-------|:-----|:-------|:----|
-|[frailtypack](failures.md#frailtypack) |3.3.0   |1     |        |     |
-|[Rariant](failures.md#rariant)         |1.24.0  |1     |        |     |
-|[skeleSim](failures.md#skelesim)       |0.9.8   |1     |        |     |
-
-## New problems (2)
-
-|package                                      |version |error  |warning |note     |
-|:--------------------------------------------|:-------|:------|:-------|:--------|
-|[bsplus](problems.md#bsplus)                 |0.1.1   |__+1__ |        |1        |
-|[RforProteomics](problems.md#rforproteomics) |1.26.0  |       |1       |2 __+1__ |
-
-## All (902)
-
-|package                                                                  |version    |error  |warning |note     |
-|:------------------------------------------------------------------------|:----------|:------|:-------|:--------|
-|[aaSEA](problems.md#aasea)                                               |1.1.0      |       |        |1        |
-|ABACUS                                                                   |1.0.0      |       |        |         |
-|abstractr                                                                |0.1.0      |       |        |         |
-|[ADAMgui](problems.md#adamgui)                                           |1.4.0      |       |        |2        |
-|[adapr](problems.md#adapr)                                               |2.0.0      |       |        |1        |
-|AdaptGauss                                                               |1.5.6      |       |        |         |
-|adaptiveGPCA                                                             |0.1.2      |       |        |         |
-|addinslist                                                               |0.3        |       |        |         |
-|addinsOutline                                                            |0.1.6      |       |        |         |
-|[adegenet](problems.md#adegenet)                                         |2.1.3      |       |        |1        |
-|[adepro](problems.md#adepro)                                             |3.0.0      |       |        |1        |
-|adespatial                                                               |0.3-8      |       |        |         |
-|[AdhereRViz](problems.md#adhererviz)                                     |0.1.0      |       |        |1        |
-|AFheritability                                                           |0.1.0      |       |        |         |
-|AFM                                                                      |1.2.6      |       |        |         |
-|ahp                                                                      |0.2.12     |       |        |         |
-|airGRteaching                                                            |0.2.8.69   |       |        |         |
-|[alevinQC](problems.md#alevinqc)                                         |1.4.0      |       |        |1        |
-|AMModels                                                                 |0.1.4      |       |        |         |
-|AmpGram                                                                  |1.0        |       |        |         |
-|[AMPLE](problems.md#ample)                                               |0.0.2      |       |        |1        |
-|AmyloGram                                                                |1.1        |       |        |         |
-|[analysisPipelines](problems.md#analysispipelines)                       |1.0.2      |       |        |1        |
-|[animalcules](problems.md#animalcules)                                   |1.4.0      |-1     |        |4        |
-|[animaltracker](problems.md#animaltracker)                               |0.1.0      |       |        |1        |
-|[animint2](problems.md#animint2)                                         |2019.7.3   |2      |        |2        |
-|aniview                                                                  |0.1.0      |       |        |         |
-|[ANOVAIREVA](problems.md#anovaireva)                                     |0.1.0      |       |        |1        |
-|ANOVAreplication                                                         |1.1.4      |       |        |         |
-|[ANOVAShiny](problems.md#anovashiny)                                     |0.1.0      |       |        |1        |
-|antaresRead                                                              |2.2.5      |       |        |         |
-|antaresViz                                                               |0.15.2     |       |        |         |
-|AnthropMMD                                                               |3.0.1      |       |        |         |
-|[antitrust](problems.md#antitrust)                                       |0.99.11    |       |        |1        |
-|aos                                                                      |0.1.0      |       |        |         |
-|[apexcharter](problems.md#apexcharter)                                   |0.1.4      |       |        |1        |
-|[appreci8R](problems.md#appreci8r)                                       |1.6.0      |1      |        |         |
-|[ArchaeoPhases](problems.md#archaeophases)                               |1.4.5      |       |        |1        |
-|archivist                                                                |2.3.4      |       |        |         |
-|[arena2r](problems.md#arena2r)                                           |1.0.0      |       |        |1        |
-|argonDash                                                                |0.2.0      |       |        |         |
-|argonR                                                                   |0.2.0      |       |        |         |
-|ARPobservation                                                           |1.2.0      |       |        |         |
-|arulesViz                                                                |1.3-3      |       |        |         |
-|asciiSetupReader                                                         |2.3.1      |       |        |         |
-|[ASSOCShiny](problems.md#assocshiny)                                     |0.1.0      |       |        |1        |
-|[AUCell](problems.md#aucell)                                             |1.10.0     |       |        |4        |
-|auth0                                                                    |0.2.1      |       |        |         |
-|AutoDeskR                                                                |0.1.3      |       |        |         |
-|autoshiny                                                                |0.0.2      |       |        |         |
-|[autoTS](problems.md#autots)                                             |0.9.11     |       |        |1        |
-|AzureAuth                                                                |1.2.4      |       |        |         |
-|azuremlsdk                                                               |0.6.85     |       |        |         |
-|backpipe                                                                 |0.2.3      |       |        |         |
-|bairt                                                                    |0.1.2      |       |        |         |
-|baRcodeR                                                                 |0.1.5      |       |        |         |
-|[BARIS](problems.md#baris)                                               |1.1.1      |       |        |1        |
-|basictabler                                                              |0.3.1      |       |        |         |
-|[BatchQC](problems.md#batchqc)                                           |1.16.0     |1      |        |1        |
-|[BayesBD](problems.md#bayesbd)                                           |1.2        |1      |        |         |
-|BayesianFROC                                                             |0.2.3      |       |        |         |
-|[BayesianNetwork](problems.md#bayesiannetwork)                           |0.1.5      |       |        |1        |
-|[BayesNetBP](problems.md#bayesnetbp)                                     |1.5.2      |       |        |1        |
-|[BBEST](problems.md#bbest)                                               |0.1-6      |1      |        |         |
-|[BCEA](problems.md#bcea)                                                 |2.3-1.1    |       |        |1        |
-|[bdchecks](problems.md#bdchecks)                                         |0.1.7      |       |        |1        |
-|[bdclean](problems.md#bdclean)                                           |0.1.15     |       |        |1        |
-|bdDwC                                                                    |0.1.15     |       |        |         |
-|[bde](problems.md#bde)                                                   |1.0.1      |       |        |1        |
-|BDEsize                                                                  |1.2        |       |        |         |
-|BDP2                                                                     |0.1.3      |       |        |         |
-|[bea.R](problems.md#bear)                                                |1.0.6      |       |        |1        |
-|BEACH                                                                    |1.3.1      |       |        |         |
-|[beanz](problems.md#beanz)                                               |2.4        |       |        |3        |
-|beats                                                                    |0.1.1      |       |        |         |
-|[bestSDP](problems.md#bestsdp)                                           |0.1.2      |       |        |1        |
-|[BETS](problems.md#bets)                                                 |0.4.9      |       |2       |1        |
-|[bibliometrix](problems.md#bibliometrix)                                 |3.0.2      |       |        |1        |
-|BIGL                                                                     |1.4.3      |       |        |         |
-|[bigPint](problems.md#bigpint)                                           |1.4.0      |       |        |1        |
-|[bigQueryR](problems.md#bigqueryr)                                       |0.5.0      |       |        |1        |
-|[billboarder](problems.md#billboarder)                                   |0.2.8      |       |        |1        |
-|[binovisualfields](problems.md#binovisualfields)                         |0.1.1      |       |        |1        |
-|[bioCancer](problems.md#biocancer)                                       |1.16.0     |       |1       |2        |
-|[BiocOncoTK](problems.md#bioconcotk)                                     |1.8.0      |1      |        |3        |
-|[BioInstaller](problems.md#bioinstaller)                                 |0.3.7      |       |        |1        |
-|[BioNetStat](problems.md#bionetstat)                                     |1.8.4      |       |        |4        |
-|[BIRDS](problems.md#birds)                                               |0.1        |       |        |2        |
-|[biva](problems.md#biva)                                                 |0.1.0      |       |        |1        |
-|[blkbox](problems.md#blkbox)                                             |1.0        |       |        |2        |
-|[blockCV](problems.md#blockcv)                                           |2.1.1      |       |        |1        |
-|blogdown                                                                 |0.19       |       |        |         |
-|[BLRShiny](problems.md#blrshiny)                                         |0.1.0      |       |        |1        |
-|bookdown                                                                 |0.19       |       |        |         |
-|bpbounds                                                                 |0.1.4      |       |        |         |
-|bridger2                                                                 |0.1.0      |       |        |         |
-|bs4Dash                                                                  |0.5.0      |       |        |         |
-|bSims                                                                    |0.2-1      |       |        |         |
-|[bsplus](problems.md#bsplus)                                             |0.1.1      |__+1__ |        |1        |
-|bullwhipgame                                                             |0.1.0      |       |        |         |
-|bunchr                                                                   |1.2.0      |       |        |         |
-|bupaR                                                                    |0.4.4      |       |        |         |
-|[caffsim](problems.md#caffsim)                                           |0.2.2      |       |        |1        |
-|CamelUp                                                                  |0.1.1      |       |        |         |
-|[canvasXpress](problems.md#canvasxpress)                                 |1.27.6-1   |       |        |1        |
-|[CaPO4Sim](problems.md#capo4sim)                                         |0.1.0      |       |        |1        |
-|[cartools](problems.md#cartools)                                         |0.1.0      |       |        |1        |
-|causaloptim                                                              |0.7.1      |       |        |         |
-|cbsodataR                                                                |0.4.1      |       |        |         |
-|[ChAMP](problems.md#champ)                                               |2.18.2     |1      |        |         |
-|ChannelAttributionApp                                                    |1.2        |       |        |         |
-|cheatR                                                                   |1.2.1      |       |        |         |
-|[CHETAH](problems.md#chetah)                                             |1.4.0      |       |        |2        |
-|[chipPCR](problems.md#chippcr)                                           |0.0.8-10   |       |        |1        |
-|[chromoMap](problems.md#chromomap)                                       |0.2        |       |        |1        |
-|chromVAR                                                                 |1.10.0     |       |        |         |
-|[cicerone](problems.md#cicerone)                                         |1.0.1      |       |        |1        |
-|Cite                                                                     |0.1.0      |       |        |         |
-|citr                                                                     |0.3.2      |       |        |         |
-|[cjoint](problems.md#cjoint)                                             |2.1.0      |       |        |2        |
-|CLME                                                                     |2.0-12     |       |        |         |
-|[clustDRM](problems.md#clustdrm)                                         |0.1-0      |       |        |1        |
-|[CLUSTShiny](problems.md#clustshiny)                                     |0.1.0      |       |        |1        |
-|cmsaf                                                                    |2.0.1      |-1     |        |         |
-|[CMShiny](problems.md#cmshiny)                                           |0.1.0      |       |        |1        |
-|cNORM                                                                    |1.2.3      |       |        |         |
-|[CNVPanelizer](problems.md#cnvpanelizer)                                 |1.20.0     |       |        |1        |
-|CNVScope                                                                 |3.0.9      |       |        |         |
-|[cocktailApp](problems.md#cocktailapp)                                   |0.2.1      |       |        |1        |
-|[codebook](problems.md#codebook)                                         |0.9.2      |       |        |2        |
-|[cognitoR](problems.md#cognitor)                                         |1.0.1      |       |        |1        |
-|colocr                                                                   |0.1.1      |       |        |         |
-|colorspace                                                               |1.4-1      |       |        |         |
-|colourpicker                                                             |1.0        |       |        |         |
-|compareGroups                                                            |4.4.1      |       |        |         |
-|[COMPASS](problems.md#compass)                                           |1.26.0     |       |        |3        |
-|[competitiontoolbox](problems.md#competitiontoolbox)                     |0.1.2      |       |        |1        |
-|complexity                                                               |1.1.1      |       |        |         |
-|condformat                                                               |0.9.0      |       |        |         |
-|condir                                                                   |0.1.2      |       |        |         |
-|condvis                                                                  |0.5-1      |       |        |         |
-|condvis2                                                                 |0.1.0      |       |        |         |
-|[conflr](problems.md#conflr)                                             |0.1.1      |       |        |1        |
-|convertr                                                                 |0.1        |       |        |         |
-|[CoRegNet](problems.md#coregnet)                                         |1.26.0     |       |1       |2        |
-|[corporaexplorer](problems.md#corporaexplorer)                           |0.8.2      |       |        |1        |
-|[cosinor](problems.md#cosinor)                                           |1.1        |       |        |1        |
-|countfitteR                                                              |1.0        |       |        |         |
-|[coveffectsplot](problems.md#coveffectsplot)                             |0.0.9      |       |        |1        |
-|[CRANsearcher](problems.md#cransearcher)                                 |1.0.0      |       |        |1        |
-|[crawl](problems.md#crawl)                                               |2.2.1      |       |        |1        |
-|credsubs                                                                 |1.1.0      |       |        |         |
-|[crispRdesignR](problems.md#crisprdesignr)                               |1.1.5      |       |        |1        |
-|[crisprseekplus](problems.md#crisprseekplus)                             |1.14.0     |       |        |1        |
-|cromwellDashboard                                                        |0.5.1      |       |        |         |
-|cronR                                                                    |0.4.0      |       |        |         |
-|[CrossICC](problems.md#crossicc)                                         |1.2.0      |       |        |1        |
-|[crossmeta](problems.md#crossmeta)                                       |1.14.0     |       |1       |2        |
-|crosstalk                                                                |1.1.0.1    |       |        |         |
-|crunchy                                                                  |0.3.1      |       |        |         |
-|[CSUV](problems.md#csuv)                                                 |0.1.0      |1      |        |         |
-|[CTAShiny](problems.md#ctashiny)                                         |0.1.0      |       |        |1        |
-|[ctsem](problems.md#ctsem)                                               |3.2.1      |       |        |3        |
-|ctsGE                                                                    |1.14.0     |       |        |         |
-|[CTShiny](problems.md#ctshiny)                                           |0.1.0      |       |        |1        |
-|CTTinShiny                                                               |0.1.0      |       |        |         |
-|CTTShiny                                                                 |0.1        |       |        |         |
-|cubeview                                                                 |0.2.0      |       |        |         |
-|[CVE](problems.md#cve)                                                   |1.11.2     |1      |1       |2        |
-|cydar                                                                    |1.12.0     |       |        |         |
-|CytobankAPIstats                                                         |2.0        |       |        |         |
-|d3heatmap                                                                |0.6.1.2    |       |        |         |
-|[d3Tree](problems.md#d3tree)                                             |0.2.0      |       |        |1        |
-|daqapo                                                                   |0.3.0      |       |        |         |
-|[datacheck](problems.md#datacheck)                                       |1.2.2      |       |        |2        |
-|[datadigest](problems.md#datadigest)                                     |1.0.2      |       |        |1        |
-|[dataesgobr](problems.md#dataesgobr)                                     |1.0.0      |       |        |1        |
-|datamaps                                                                 |0.0.3      |       |        |         |
-|datasets.load                                                            |1.4.0      |       |        |         |
-|daterangepicker                                                          |0.1.0      |       |        |         |
-|dccvalidator                                                             |0.2.0      |       |        |         |
-|ddpcr                                                                    |1.15       |       |        |         |
-|[debrowser](problems.md#debrowser)                                       |1.16.1     |       |        |1        |
-|deepdep                                                                  |0.2.1      |       |        |         |
-|deisotoper                                                               |0.0.7      |       |        |         |
-|[delayed](problems.md#delayed)                                           |0.3.0      |       |        |1        |
-|demoShiny                                                                |0.1        |       |        |         |
-|[DEP](problems.md#dep)                                                   |1.10.0     |       |        |1        |
-|[detzrcr](problems.md#detzrcr)                                           |0.3.0      |       |        |1        |
-|dextergui                                                                |0.2.2      |       |        |         |
-|diffr                                                                    |0.1        |       |        |         |
-|dipsaus                                                                  |0.0.7      |       |        |         |
-|[DiscoRhythm](problems.md#discorhythm)                                   |1.4.0      |       |        |2        |
-|discoveR                                                                 |1.2.4      |       |        |         |
-|disk.frame                                                               |0.3.6      |       |        |         |
-|distcomp                                                                 |1.1        |       |        |         |
-|distill                                                                  |0.8        |       |        |         |
-|distreg.vis                                                              |1.7.0      |       |        |         |
-|Distributacalcul                                                         |0.2.2      |       |        |         |
-|[diveRsity](problems.md#diversity)                                       |1.9.90     |       |        |1        |
-|DIZutils                                                                 |0.0.4      |       |        |         |
-|[DLMtool](problems.md#dlmtool)                                           |5.4.5      |       |        |1        |
-|dmdScheme                                                                |1.2        |       |        |         |
-|[Doscheda](problems.md#doscheda)                                         |1.10.0     |       |        |1        |
-|[dosedesignR](problems.md#dosedesignr)                                   |0.2.4      |       |        |1        |
-|dpcR                                                                     |0.5        |       |        |         |
-|[dplyrAssist](problems.md#dplyrassist)                                   |0.1.0      |       |        |1        |
-|dqshiny                                                                  |0.0.4      |       |        |         |
-|[dragon](problems.md#dragon)                                             |0.2.1      |       |        |1        |
-|dragulaR                                                                 |0.3.1      |       |        |         |
-|DRomics                                                                  |2.0-1      |       |        |         |
-|[dropR](problems.md#dropr)                                               |0.1        |       |        |1        |
-|DSAIDE                                                                   |0.8.3      |       |        |         |
-|DSAIRM                                                                   |0.8.2      |       |        |         |
-|DT                                                                       |0.13       |       |        |         |
-|DTAT                                                                     |0.3-4      |       |        |         |
-|[dtwclust](problems.md#dtwclust)                                         |5.5.6      |       |        |1        |
-|[DVHmetrics](problems.md#dvhmetrics)                                     |0.3.10     |       |        |1        |
-|[dynamichazard](problems.md#dynamichazard)                               |0.6.6      |       |        |1        |
-|DynNom                                                                   |5.0.1      |       |        |         |
-|Eagle                                                                    |2.2        |       |        |         |
-|eAnalytics                                                               |0.1.4      |       |        |         |
-|easySdcTable                                                             |0.5.0      |       |        |         |
-|[EBImage](problems.md#ebimage)                                           |4.30.0     |       |1       |1        |
-|ECharts2Shiny                                                            |0.2.13     |       |        |         |
-|echarts4r                                                                |0.3.2      |       |        |         |
-|edeaR                                                                    |0.8.5      |       |        |         |
-|edgebundleR                                                              |0.1.4      |       |        |         |
-|editData                                                                 |0.1.2      |       |        |         |
-|eechidna                                                                 |1.4.0      |       |        |         |
-|eemR                                                                     |1.0.1      |       |        |         |
-|EffectLiteR                                                              |0.4-4      |       |        |         |
-|[effectR](problems.md#effectr)                                           |1.0.2      |       |        |1        |
-|egor                                                                     |0.20.06    |       |        |         |
-|einet                                                                    |0.1.0      |       |        |         |
-|elaborator                                                               |1.0        |       |        |         |
-|[elementR](problems.md#elementr)                                         |1.3.6      |1      |        |         |
-|[embryogrowth](problems.md#embryogrowth)                                 |7.6        |       |        |1        |
-|[EML](problems.md#eml)                                                   |2.0.2      |       |        |1        |
-|EMMAgeo                                                                  |0.9.7      |       |        |         |
-|EMSaov                                                                   |2.3        |       |        |         |
-|emuR                                                                     |2.1.0      |       |        |         |
-|[ENCODExplorer](problems.md#encodexplorer)                               |2.14.0     |       |        |1        |
-|[enviGCMS](problems.md#envigcms)                                         |0.6.6      |       |        |1        |
-|enviPick                                                                 |1.5        |       |        |         |
-|[epicontacts](problems.md#epicontacts)                                   |1.1.0      |       |        |1        |
-|epimdr                                                                   |0.6-5      |       |        |         |
-|EpiModel                                                                 |1.8.0      |       |        |         |
-|[EpiSignalDetection](problems.md#episignaldetection)                     |0.1.1      |       |        |1        |
-|[epivizrChart](problems.md#epivizrchart)                                 |1.10.0     |       |        |2        |
-|eq5d                                                                     |0.7.1      |       |        |         |
-|[erma](problems.md#erma)                                                 |1.4.0      |       |        |2        |
-|ERSA                                                                     |0.1.1      |       |        |         |
-|eSDM                                                                     |0.3.4      |       |        |         |
-|eseis                                                                    |0.5.0      |       |        |         |
-|esquisse                                                                 |0.3.0      |       |        |         |
-|EurosarcBayes                                                            |1.1        |       |        |         |
-|evaluator                                                                |0.4.2      |       |        |         |
-|EventDetectGUI                                                           |0.3.0      |       |        |         |
-|[EventStudy](problems.md#eventstudy)                                     |0.36       |       |        |2        |
-|evobiR                                                                   |1.1        |       |        |         |
-|excelR                                                                   |0.4.0      |       |        |         |
-|ExPanDaR                                                                 |0.5.1      |       |        |         |
-|explor                                                                   |0.3.6      |       |        |         |
-|explore                                                                  |0.5.5      |       |        |         |
-|ExploreModelMatrix                                                       |1.0.1      |       |        |         |
-|[ezplot](problems.md#ezplot)                                             |0.6.1      |       |        |1        |
-|Factoshiny                                                               |2.2        |       |        |         |
-|fanplot                                                                  |3.4.2      |       |        |         |
-|[farrell](problems.md#farrell)                                           |0.2.0      |       |        |1        |
-|[FastqCleaner](problems.md#fastqcleaner)                                 |1.6.0      |       |        |2        |
-|[FELLA](problems.md#fella)                                               |1.8.0      |1      |        |1        |
-|findviews                                                                |0.1.3      |       |        |         |
-|fingertipsR                                                              |1.0.4      |       |        |         |
-|[firebase](problems.md#firebase)                                         |0.1.0      |       |        |1        |
-|[fitteR](problems.md#fitter)                                             |0.1.0      |       |        |1        |
-|[fitur](problems.md#fitur)                                               |0.6.1      |       |        |1        |
-|flacco                                                                   |1.8        |       |        |         |
-|[flair](problems.md#flair)                                               |0.0.2      |       |        |1        |
-|flexdashboard                                                            |0.5.1.1    |       |        |         |
-|[flora](problems.md#flora)                                               |0.3.4      |       |        |1        |
-|[flowAI](problems.md#flowai)                                             |1.18.2     |       |        |1        |
-|[flowcatchR](problems.md#flowcatchr)                                     |1.22.0     |       |        |2        |
-|flowPloidy                                                               |1.14.0     |       |        |         |
-|formatR                                                                  |1.7        |       |        |         |
-|formattable                                                              |0.2.0.1    |       |        |         |
-|[frailtypack](failures.md#frailtypack)                                   |3.3.0      |1      |        |         |
-|FreqProf                                                                 |0.0.1      |       |        |         |
-|frequency                                                                |0.4.0      |       |        |         |
-|fresh                                                                    |0.2.0      |       |        |         |
-|[FSK2R](problems.md#fsk2r)                                               |0.1.1      |1      |        |         |
-|[FunChIP](problems.md#funchip)                                           |1.14.0     |1      |        |         |
-|FuzzyR                                                                   |2.3        |       |        |         |
-|G2Sd                                                                     |2.1.5      |       |        |         |
-|[g3viz](problems.md#g3viz)                                               |1.1.2      |       |        |1        |
-|[GA4GHshiny](problems.md#ga4ghshiny)                                     |1.10.0     |1      |        |1        |
-|[gamesGA](problems.md#gamesga)                                           |1.1.3.7    |       |        |1        |
-|[gastempt](problems.md#gastempt)                                         |0.5.0      |       |        |3        |
-|gazepath                                                                 |1.3        |       |        |         |
-|[GDCRNATools](problems.md#gdcrnatools)                                   |1.8.0      |       |        |3        |
-|GDINA                                                                    |2.8.0      |       |        |         |
-|genBaRcode                                                               |1.2.3      |       |        |         |
-|[genBart](problems.md#genbart)                                           |1.0.1      |       |        |1        |
-|[GeneNetworkBuilder](problems.md#genenetworkbuilder)                     |1.30.0     |       |        |1        |
-|GeneralizedUmatrix                                                       |1.1.9      |       |        |         |
-|[GenEst](problems.md#genest)                                             |1.4.4      |       |        |1        |
-|[GeneTonic](problems.md#genetonic)                                       |1.0.1      |       |        |2        |
-|genogeographer                                                           |0.1.19     |       |        |         |
-|[GenomicScores](problems.md#genomicscores)                               |2.0.0      |1      |        |4        |
-|genTS                                                                    |0.1.3      |       |        |         |
-|geodrawr                                                                 |1.0.1      |       |        |         |
-|[GerminaR](problems.md#germinar)                                         |1.4.2      |       |        |1        |
-|gestate                                                                  |1.4.0      |       |        |         |
-|getTBinR                                                                 |0.7.1      |       |        |         |
-|gfonts                                                                   |0.1.1      |       |        |         |
-|[ggedit](problems.md#ggedit)                                             |0.3.1      |       |        |1        |
-|[ggExtra](problems.md#ggextra)                                           |0.9        |       |        |1        |
-|ggiraph                                                                  |0.7.0      |       |        |         |
-|[ggplotAssist](problems.md#ggplotassist)                                 |0.1.3      |       |        |1        |
-|ggplotgui                                                                |1.0.0      |       |        |         |
-|[ggquickeda](problems.md#ggquickeda)                                     |0.1.6      |       |        |1        |
-|ggraptR                                                                  |1.2        |       |        |         |
-|ggThemeAssist                                                            |0.1.5      |       |        |         |
-|ggvis                                                                    |0.4.5      |       |        |         |
-|gimmeTools                                                               |0.1        |       |        |         |
-|giphyr                                                                   |0.2.0      |       |        |         |
-|gitgadget                                                                |0.5.2      |       |        |         |
-|gitlabr                                                                  |1.1.6      |       |        |         |
-|gitlink                                                                  |0.1.3      |       |        |         |
-|glmaag                                                                   |0.0.6      |       |        |         |
-|GMCM                                                                     |1.4        |       |        |         |
-|[gmDatabase](problems.md#gmdatabase)                                     |0.5.0      |       |2       |1        |
-|[GmicR](problems.md#gmicr)                                               |1.2.0      |       |        |3        |
-|GMSE                                                                     |0.6.0.4    |       |        |         |
-|[GOFShiny](problems.md#gofshiny)                                         |0.1.0      |       |        |1        |
-|golem                                                                    |0.2.1      |       |        |         |
-|googleAnalyticsR                                                         |0.7.1      |       |        |         |
-|googleAuthR                                                              |1.3.0      |       |        |         |
-|googleCloudRunner                                                        |0.2.0      |       |        |         |
-|googleLanguageR                                                          |0.3.0      |       |        |         |
-|googleVis                                                                |0.6.5      |       |        |         |
-|googleway                                                                |2.7.1      |       |        |         |
-|[GPA](problems.md#gpa)                                                   |1.0.0      |       |        |1        |
-|GPoM.FDLyapu                                                             |1.0        |       |        |         |
-|[gQTLstats](problems.md#gqtlstats)                                       |1.20.0     |       |        |4        |
-|gradientPickerD3                                                         |0.1.0.0    |       |        |         |
-|[gravitas](problems.md#gravitas)                                         |0.1.2      |2      |        |         |
-|[gridsampler](problems.md#gridsampler)                                   |0.6        |       |        |1        |
-|[GSCA](problems.md#gsca)                                                 |2.17.0     |       |        |3        |
-|GSVA                                                                     |1.36.2     |       |        |         |
-|[gt](problems.md#gt)                                                     |0.2.1      |       |        |2        |
-|guiplot                                                                  |0.1.0      |       |        |         |
-|[gwdegree](problems.md#gwdegree)                                         |0.1.1      |       |        |1        |
-|GWSDAT                                                                   |3.0.3      |       |        |         |
-|[HaDeX](problems.md#hadex)                                               |1.2.1      |       |        |2        |
-|HARtools                                                                 |0.0.5      |       |        |         |
-|[hchinamap](problems.md#hchinamap)                                       |0.1.0      |       |        |1        |
-|HelpersMG                                                                |4.2        |       |        |         |
-|HH                                                                       |3.1-40     |       |        |         |
-|[highcharter](problems.md#highcharter)                                   |0.7.0      |       |        |1        |
-|highlightHTML                                                            |0.2.5      |       |        |         |
-|hpackedbubble                                                            |0.1.0      |       |        |         |
-|hR                                                                       |0.2.1      |       |        |         |
-|[HumanTranscriptomeCompendium](problems.md#humantranscriptomecompendium) |1.4.0      |2      |        |         |
-|[hwordcloud](problems.md#hwordcloud)                                     |0.1.0      |       |        |1        |
-|iAdapt                                                                   |0.1.0      |       |        |         |
-|iCellR                                                                   |1.5.1      |       |        |         |
-|iCOBRA                                                                   |1.16.0     |       |        |         |
-|ICSShiny                                                                 |0.5        |       |        |         |
-|[ideal](problems.md#ideal)                                               |1.12.1     |       |        |1        |
-|[idefix](problems.md#idefix)                                             |0.4.3      |       |        |1        |
-|[idem](problems.md#idem)                                                 |5.0        |       |        |2        |
-|ifaTools                                                                 |0.21       |       |        |         |
-|igraphinshiny                                                            |0.1        |       |        |         |
-|iheatmapr                                                                |0.4.12     |       |        |         |
-|imagefluency                                                             |0.2.3      |       |        |         |
-|Imetagene                                                                |1.18.0     |       |        |         |
-|[immunarch](problems.md#immunarch)                                       |0.6.5      |       |        |2        |
-|IMP                                                                      |1.1        |       |        |         |
-|ImportExport                                                             |1.1        |       |        |         |
-|[IMWatson](problems.md#imwatson)                                         |0.5.0      |       |        |1        |
-|[IncucyteDRC](problems.md#incucytedrc)                                   |0.5.4      |1      |        |         |
-|[INDperform](problems.md#indperform)                                     |0.2.2      |2      |        |1        |
-|inferr                                                                   |0.3.0      |       |        |         |
-|[inlabru](problems.md#inlabru)                                           |2.1.13     |       |        |2        |
-|[INSPEcT](problems.md#inspect)                                           |1.18.0     |       |        |2        |
-|[interactiveDisplay](problems.md#interactivedisplay)                     |1.26.0     |       |1       |2        |
-|interactiveDisplayBase                                                   |1.26.3     |       |        |         |
-|[interAdapt](problems.md#interadapt)                                     |0.1        |       |        |2        |
-|interimApp                                                               |0.0.1      |       |        |         |
-|[IOHanalyzer](problems.md#iohanalyzer)                                   |0.1.3      |       |        |2        |
-|ioncopy                                                                  |2.1.1      |       |        |         |
-|ipc                                                                      |0.1.3      |       |        |         |
-|ipumsr                                                                   |0.4.4      |       |        |         |
-|irtDemo                                                                  |0.1.4      |       |        |         |
-|IRTShiny                                                                 |1.2        |       |        |         |
-|[iSEE](problems.md#isee)                                                 |2.0.0      |2      |        |2        |
-|[iSEEu](problems.md#iseeu)                                               |1.0.1      |2      |        |         |
-|[iSTATS](problems.md#istats)                                             |1.4        |       |        |1        |
-|[ivygapSE](problems.md#ivygapse)                                         |1.10.0     |       |        |2        |
-|JMbayes                                                                  |0.8-85     |       |        |         |
-|JointNets                                                                |2.0.1      |       |        |         |
-|[jpmesh](problems.md#jpmesh)                                             |1.2.1      |       |        |1        |
-|[jpndistrict](problems.md#jpndistrict)                                   |0.3.7      |       |        |1        |
-|[jsmodule](problems.md#jsmodule)                                         |1.0.8      |       |        |1        |
-|KappaGUI                                                                 |2.0.2      |       |        |         |
-|KCSKNNShiny                                                              |0.1.0      |       |        |         |
-|KCSNBShiny                                                               |0.1.0      |       |        |         |
-|kgc                                                                      |1.0.0.2    |       |        |         |
-|kgschart                                                                 |1.3.5      |       |        |         |
-|[KNNShiny](problems.md#knnshiny)                                         |0.1.0      |       |        |1        |
-|[kokudosuuchi](problems.md#kokudosuuchi)                                 |0.4.2      |       |        |1        |
-|[koRpus](problems.md#korpus)                                             |0.11-5     |       |        |1        |
-|lavaan.shiny                                                             |1.2        |       |        |         |
-|LBSPR                                                                    |0.1.5      |       |        |         |
-|lcars                                                                    |0.3.1      |       |        |         |
-|lcsm                                                                     |0.1.1      |       |        |         |
-|LDAvis                                                                   |0.3.2      |       |        |         |
-|leaflet                                                                  |2.0.3      |       |        |         |
-|[leaflet.extras2](problems.md#leafletextras2)                            |1.0.0      |       |        |1        |
-|leaflet.minicharts                                                       |0.6.0      |       |        |         |
-|learnr                                                                   |0.10.1     |       |        |         |
-|[learnstats](problems.md#learnstats)                                     |0.1.1      |       |        |1        |
-|[levi](problems.md#levi)                                                 |1.6.0      |       |        |2        |
-|lifelogr                                                                 |0.1.0      |       |        |         |
-|lightsout                                                                |0.3        |       |        |         |
-|[likert](problems.md#likert)                                             |1.3.5      |       |        |1        |
-|lime                                                                     |0.5.1      |       |        |         |
-|linguisticsdown                                                          |1.2.0      |       |        |         |
-|linkspotter                                                              |1.2.0      |       |        |         |
-|linpk                                                                    |1.0        |       |        |         |
-|listviewer                                                               |3.0.0      |       |        |         |
-|[live](problems.md#live)                                                 |1.5.13     |       |        |1        |
-|[lmviz](problems.md#lmviz)                                               |0.1.2      |       |        |1        |
-|manipulateWidget                                                         |0.10.1     |       |        |         |
-|[mapdeck](problems.md#mapdeck)                                           |0.3.3      |       |        |1        |
-|[mapedit](problems.md#mapedit)                                           |0.6.0      |       |        |1        |
-|markdownInput                                                            |0.1.2      |       |        |         |
-|matman                                                                   |1.1.0      |       |        |         |
-|MAVIS                                                                    |1.1.3      |       |        |         |
-|MazamaSpatialUtils                                                       |0.6.4      |       |        |         |
-|MCPModPack                                                               |0.2        |-1     |        |         |
-|mcvis                                                                    |1.0.4      |       |        |         |
-|[MDSPCAShiny](problems.md#mdspcashiny)                                   |0.1.0      |       |        |1        |
-|meltt                                                                    |0.4.1      |       |        |         |
-|[memapp](problems.md#memapp)                                             |2.13       |       |        |1        |
-|[memery](problems.md#memery)                                             |0.5.2      |       |        |1        |
-|merTools                                                                 |0.5.0      |       |        |         |
-|[meta4diag](problems.md#meta4diag)                                       |2.0.8      |       |        |1        |
-|MetaAnalyser                                                             |0.2.1      |       |        |         |
-|metamer                                                                  |0.2.0      |       |        |         |
-|metathis                                                                 |1.0.2      |       |        |         |
-|[MetCirc](problems.md#metcirc)                                           |1.18.0     |       |        |2        |
-|[MethylAid](problems.md#methylaid)                                       |1.22.0     |2      |        |1        |
-|[methylGSA](problems.md#methylgsa)                                       |1.6.1      |       |        |1        |
-|metricsgraphics                                                          |0.9.0      |       |        |         |
-|[mgcViz](problems.md#mgcviz)                                             |0.1.6      |       |        |1        |
-|[microhaplot](problems.md#microhaplot)                                   |1.0.1      |       |        |1        |
-|microsamplingDesign                                                      |1.0.7      |       |        |         |
-|midas                                                                    |1.0.1      |       |        |         |
-|MIMSunit                                                                 |0.9.1      |       |        |         |
-|[miniMeta](problems.md#minimeta)                                         |0.2        |       |        |1        |
-|miniUI                                                                   |0.1.1.1    |       |        |         |
-|[miRcomp](problems.md#mircomp)                                           |1.18.0     |       |1       |         |
-|mirt                                                                     |1.32.1     |       |        |         |
-|mirtCAT                                                                  |1.9.3      |       |        |         |
-|[MLDAShiny](problems.md#mldashiny)                                       |0.1.0      |       |        |1        |
-|mldr                                                                     |0.4.3      |       |        |         |
-|[MLInterfaces](problems.md#mlinterfaces)                                 |1.68.0     |       |        |5        |
-|[mlr3shiny](problems.md#mlr3shiny)                                       |0.1.1      |       |        |1        |
-|[MLRShiny](problems.md#mlrshiny)                                         |0.1.0      |       |        |1        |
-|[MLRShiny2](problems.md#mlrshiny2)                                       |0.1.0      |       |        |1        |
-|mlxR                                                                     |4.1.3      |       |        |         |
-|[MMDiff2](problems.md#mmdiff2)                                           |1.16.0     |       |        |4        |
-|[MNLR](problems.md#mnlr)                                                 |0.1.0      |       |        |1        |
-|modest                                                                   |0.3-1      |       |        |         |
-|MODIStsp                                                                 |1.4.0      |       |        |         |
-|Mondrian                                                                 |1.1.0      |       |        |         |
-|mplot                                                                    |1.0.4      |       |        |         |
-|mrMLM.GUI                                                                |4.0        |       |        |         |
-|[MSEtool](problems.md#msetool)                                           |1.6.0      |       |        |1        |
-|[MSGFgui](problems.md#msgfgui)                                           |1.22.0     |1      |        |         |
-|[MSnbase](problems.md#msnbase)                                           |2.14.2     |       |        |3        |
-|MSstatsQCgui                                                             |1.8.0      |       |        |         |
-|[mstrio](problems.md#mstrio)                                             |11.2.1     |       |        |1        |
-|MtreeRing                                                                |1.4.2      |       |        |         |
-|[MuChPoint](problems.md#muchpoint)                                       |0.6.1      |       |        |1        |
-|multichull                                                               |1.0.0      |       |        |         |
-|mwaved                                                                   |1.1.7      |       |        |         |
-|mwshiny                                                                  |2.1.0      |       |        |         |
-|NACHO                                                                    |1.0.1      |       |        |         |
-|[nbc4va](problems.md#nbc4va)                                             |1.1        |1      |        |1        |
-|[NBShiny](problems.md#nbshiny)                                           |0.1.0      |       |        |1        |
-|[NBShiny2](problems.md#nbshiny2)                                         |0.1.0      |       |        |1        |
-|[NDP](problems.md#ndp)                                                   |0.1.0      |       |        |1        |
-|[neo4r](problems.md#neo4r)                                               |0.1.1      |       |        |1        |
-|netCoin                                                                  |1.1.25     |       |        |         |
-|netrankr                                                                 |0.2.1      |       |        |         |
-|nlgeocoder                                                               |0.1.3      |       |        |         |
-|NNTbiomarker                                                             |0.29.11    |       |        |         |
-|normalr                                                                  |1.0.0      |       |        |         |
-|nph                                                                      |2.0        |       |        |         |
-|[nprcgenekeepr](problems.md#nprcgenekeepr)                               |1.0.3      |       |        |1        |
-|npregfast                                                                |1.5.1      |       |        |         |
-|nse2r                                                                    |0.1.2      |       |        |         |
-|objectremover                                                            |0.7.0      |       |        |         |
-|[oceanis](problems.md#oceanis)                                           |1.7.3      |       |        |2        |
-|[omicplotR](problems.md#omicplotr)                                       |1.8.0      |       |        |2        |
-|[oneSENSE](problems.md#onesense)                                         |1.10.0     |       |1       |1        |
-|[ontoProc](problems.md#ontoproc)                                         |1.10.0     |1      |        |3        |
-|[oolong](problems.md#oolong)                                             |0.3.4      |       |        |1        |
-|OpenImageR                                                               |1.1.7      |       |        |         |
-|[openmetrics](problems.md#openmetrics)                                   |0.1.1      |       |        |1        |
-|[openPrimeRui](problems.md#openprimerui)                                 |1.10.0     |       |        |2        |
-|[oppr](problems.md#oppr)                                                 |1.0.2      |       |        |1        |
-|optimStrat                                                               |2.1        |       |        |         |
-|OWEA                                                                     |0.1.1      |       |        |         |
-|[pairsD3](problems.md#pairsd3)                                           |0.1.0      |       |        |1        |
-|[PanVizGenerator](problems.md#panvizgenerator)                           |1.16.0     |       |        |1        |
-|ParallelLogger                                                           |2.0.0      |       |        |         |
-|paramGUI                                                                 |2.1.4      |       |        |         |
-|parcoords                                                                |1.0.0      |       |        |         |
-|[PathoStat](problems.md#pathostat)                                       |1.14.0     |       |        |1        |
-|pcadapt                                                                  |4.3.3      |       |        |         |
-|[pcaExplorer](problems.md#pcaexplorer)                                   |2.14.2     |       |        |2        |
-|[pcFactorStan](problems.md#pcfactorstan)                                 |1.5.1      |       |        |2        |
-|PCRedux                                                                  |1.0-6      |       |        |         |
-|pdfsearch                                                                |0.3.0      |       |        |         |
-|PDShiny                                                                  |0.1.0      |       |        |         |
-|PELVIS                                                                   |2.0.1      |       |        |         |
-|[pepStat](problems.md#pepstat)                                           |1.22.0     |       |        |3        |
-|periscope                                                                |0.4.10-1   |       |        |         |
-|[phenocamr](problems.md#phenocamr)                                       |1.1.4      |       |        |1        |
-|phenofit                                                                 |0.2.7      |       |        |         |
-|phenology                                                                |7.3        |       |        |         |
-|phuse                                                                    |0.2.2      |       |        |         |
-|PhyloProfile                                                             |1.2.5      |       |        |         |
-|[piano](problems.md#piano)                                               |2.4.0      |       |        |2        |
-|pipe.design                                                              |0.5.1      |       |        |         |
-|pipefittr                                                                |0.1.2      |       |        |         |
-|[pitchRx](problems.md#pitchrx)                                           |1.8.2      |       |        |1        |
-|PivotalR                                                                 |0.1.18.3.1 |       |        |         |
-|[pivottabler](problems.md#pivottabler)                                   |1.5.0      |       |        |1        |
-|pixels                                                                   |0.1.0      |       |        |         |
-|PKconverter                                                              |1.5        |       |        |         |
-|pkgsearch                                                                |3.0.2      |       |        |         |
-|plainview                                                                |0.1.0      |       |        |         |
-|[plethem](problems.md#plethem)                                           |0.1.7      |1      |        |1        |
-|[plotGrouper](problems.md#plotgrouper)                                   |1.6.0      |       |        |1        |
-|[plotly](problems.md#plotly)                                             |4.9.2.1    |       |        |1        |
-|plotROC                                                                  |2.2.1      |       |        |         |
-|plotSEMM                                                                 |2.4        |       |        |         |
-|plsr                                                                     |0.0.1      |       |        |         |
-|[pmd](problems.md#pmd)                                                   |0.1.9      |       |        |1        |
-|[pogos](problems.md#pogos)                                               |1.8.0      |       |        |1        |
-|[polaroid](problems.md#polaroid)                                         |0.0.1      |       |        |1        |
-|[polmineR](problems.md#polminer)                                         |0.8.0      |       |        |1        |
-|PopED                                                                    |0.5.0      |       |        |         |
-|poppr                                                                    |2.8.6      |       |        |         |
-|populationPDXdesign                                                      |1.0.3      |       |        |         |
-|powdR                                                                    |1.2.2      |       |        |         |
-|powerlmm                                                                 |0.4.0      |       |        |         |
-|ppcSpatial                                                               |0.2.0      |       |        |         |
-|pqantimalarials                                                          |0.2        |       |        |         |
-|[precisely](problems.md#precisely)                                       |0.1.0      |       |        |1        |
-|[PrecisionTrialDrawer](problems.md#precisiontrialdrawer)                 |1.4.0      |1      |        |         |
-|[predictoR](problems.md#predictor)                                       |1.1.0      |       |        |1        |
-|[PREPShiny](problems.md#prepshiny)                                       |0.1.0      |       |        |1        |
-|[primirTSS](problems.md#primirtss)                                       |1.6.1      |       |1       |1        |
-|[prioritizr](problems.md#prioritizr)                                     |5.0.1      |       |        |2        |
-|ProbBayes                                                                |1.1        |       |        |         |
-|[PROBShiny](problems.md#probshiny)                                       |0.1.0      |       |        |1        |
-|[processanimateR](problems.md#processanimater)                           |1.0.3      |       |        |1        |
-|processmapR                                                              |0.3.4      |       |        |         |
-|processmonitR                                                            |0.1.0      |       |        |         |
-|processR                                                                 |0.2.3      |       |        |         |
-|profvis                                                                  |0.3.6      |       |        |         |
-|progressr                                                                |0.6.0      |       |        |         |
-|ProjectionBasedClustering                                                |1.1.1      |       |        |         |
-|pRolocGUI                                                                |1.22.0     |       |        |         |
-|Prostar                                                                  |1.20.0     |       |        |         |
-|[psichomics](problems.md#psichomics)                                     |1.14.1     |       |        |1        |
-|PupilPre                                                                 |0.6.2      |       |        |         |
-|pushbar                                                                  |0.1.0      |       |        |         |
-|[pwrEWAS](problems.md#pwrewas)                                           |1.2.0      |2      |        |         |
-|[QCA](problems.md#qca)                                                   |3.8.2      |       |        |2        |
-|qgam                                                                     |1.3.2      |       |        |         |
-|[qlcData](problems.md#qlcdata)                                           |0.2.1      |       |        |1        |
-|[qqplotr](problems.md#qqplotr)                                           |0.0.4      |       |        |1        |
-|qqvases                                                                  |1.0.0      |       |        |         |
-|QRAGadget                                                                |0.1.0      |       |        |         |
-|qrage                                                                    |1.0        |       |        |         |
-|QTL.gCIMapping.GUI                                                       |2.1        |       |        |         |
-|[questionr](problems.md#questionr)                                       |0.7.1      |       |        |2        |
-|R.SamBada                                                                |0.1.2      |       |        |         |
-|r2d3                                                                     |0.2.3      |       |        |         |
-|[R3CPET](problems.md#r3cpet)                                             |1.20.0     |1      |        |         |
-|r4ss                                                                     |1.36.1     |       |        |         |
-|rabi                                                                     |1.0.2      |       |        |         |
-|radarchart                                                               |0.3.1      |       |        |         |
-|radiant                                                                  |1.3.2      |       |        |         |
-|radiant.basics                                                           |1.3.4      |       |        |         |
-|radiant.data                                                             |1.3.9      |       |        |         |
-|radiant.design                                                           |1.3.5      |       |        |         |
-|radiant.model                                                            |1.3.10     |       |        |         |
-|radiant.multivariate                                                     |1.3.5      |       |        |         |
-|radix                                                                    |0.6        |       |        |         |
-|[RagGrid](problems.md#raggrid)                                           |0.2.0      |       |        |1        |
-|rainette                                                                 |0.1.1      |       |        |         |
-|[rAmCharts](problems.md#ramcharts)                                       |2.1.13     |       |        |1        |
-|rangeMapper                                                              |0.3-7      |       |        |         |
-|[rangeModelMetadata](problems.md#rangemodelmetadata)                     |0.1.3      |       |        |1        |
-|RanglaPunjab                                                             |2.3.4      |       |        |         |
-|[rapbase](problems.md#rapbase)                                           |1.10.0     |       |        |1        |
-|[Rariant](failures.md#rariant)                                           |1.24.0     |1      |        |         |
-|rbin                                                                     |0.2.0      |       |        |         |
-|rblt                                                                     |0.2.4.5    |       |        |         |
-|[rcellminer](problems.md#rcellminer)                                     |2.10.0     |       |1       |3        |
-|[rCGH](problems.md#rcgh)                                                 |1.18.0     |       |        |2        |
-|rclipboard                                                               |0.1.2      |       |        |         |
-|rco                                                                      |1.0.1      |       |        |         |
-|rcrossref                                                                |1.0.0      |       |        |         |
-|[Rcwl](problems.md#rcwl)                                                 |1.4.2      |1      |4       |5        |
-|[rddapp](problems.md#rddapp)                                             |1.2.1      |1      |        |2        |
-|RDML                                                                     |1.0        |       |        |         |
-|reactable                                                                |0.2.0      |       |        |         |
-|reactlog                                                                 |1.0.0      |       |        |         |
-|reactR                                                                   |0.4.2      |       |        |         |
-|[recmap](problems.md#recmap)                                             |1.0.7      |       |        |1        |
-|[ReDaMoR](problems.md#redamor)                                           |0.4.2      |       |        |1        |
-|[RefNet](problems.md#refnet)                                             |1.24.0     |       |1       |         |
-|refund.shiny                                                             |0.3.0      |       |        |         |
-|regexSelect                                                              |1.0.0      |       |        |         |
-|[regressoR](problems.md#regressor)                                       |1.1.8      |       |        |1        |
-|Repliscope                                                               |1.1.0      |       |        |         |
-|repo                                                                     |2.1.5      |       |        |         |
-|[ReportingTools](problems.md#reportingtools)                             |2.28.0     |       |        |1        |
-|reprex                                                                   |0.3.0      |       |        |         |
-|[reverseR](problems.md#reverser)                                         |0.1        |       |        |1        |
-|revtools                                                                 |0.4.1      |       |        |         |
-|[RforProteomics](problems.md#rforproteomics)                             |1.26.0     |       |1       |2 __+1__ |
-|[Rfssa](problems.md#rfssa)                                               |1.0.0      |       |        |1        |
-|RGA                                                                      |0.4.2      |       |        |         |
-|[rgl](problems.md#rgl)                                                   |0.100.54   |       |        |2        |
-|[rhandsontable](problems.md#rhandsontable)                               |0.3.7      |       |        |1        |
-|Rilostat                                                                 |1.1        |       |        |         |
-|rintrojs                                                                 |0.2.2      |       |        |         |
-|rivr                                                                     |1.2-2      |       |        |         |
-|[RLumShiny](problems.md#rlumshiny)                                       |0.2.2      |       |        |1        |
-|[rmarkdown](problems.md#rmarkdown)                                       |2.3        |       |        |1        |
-|[rmd](problems.md#rmd)                                                   |0.1.5      |       |        |1        |
-|[RnBeads](problems.md#rnbeads)                                           |2.6.0      |       |        |7        |
-|rnn                                                                      |0.9.8      |       |        |         |
-|roadoi                                                                   |0.6        |       |        |         |
-|robmed                                                                   |0.7.0      |       |        |         |
-|[RobStatTM](problems.md#robstattm)                                       |1.0.2      |       |        |1        |
-|[rosr](problems.md#rosr)                                                 |0.0.10     |       |        |1        |
-|rPackedBar                                                               |0.2.2      |       |        |         |
-|[rpostgisLT](problems.md#rpostgislt)                                     |0.6.0      |       |        |1        |
-|rpredictit                                                               |0.0.2      |       |        |         |
-|[Rqc](problems.md#rqc)                                                   |1.22.0     |       |        |2        |
-|[RQuantLib](problems.md#rquantlib)                                       |0.4.12     |2      |1       |         |
-|rrtable                                                                  |0.2.1      |       |        |         |
-|[rrvgo](problems.md#rrvgo)                                               |1.0.0      |       |        |3        |
-|RSCAT                                                                    |1.1.0      |       |        |         |
-|rsconnect                                                                |0.8.16     |       |        |         |
-|[rtimicropem](problems.md#rtimicropem)                                   |1.4.0      |       |        |1        |
-|rTRMui                                                                   |1.26.0     |       |        |         |
-|[RtutoR](problems.md#rtutor)                                             |1.2        |       |        |1        |
-|rusk                                                                     |0.1.1      |       |        |         |
-|ruv                                                                      |0.9.7.1    |       |        |         |
-|rwalkr                                                                   |0.5.2      |       |        |         |
-|[RxODE](problems.md#rxode)                                               |0.9.2-0    |       |        |1        |
-|sadists                                                                  |0.2.3      |       |        |         |
-|[safetyGraphics](problems.md#safetygraphics)                             |1.1.0      |       |        |1        |
-|samr                                                                     |3.0        |       |        |         |
-|[sangerseqR](problems.md#sangerseqr)                                     |1.24.0     |       |        |1        |
-|sankeywheel                                                              |0.1.0      |       |        |         |
-|[santaR](problems.md#santar)                                             |1.0        |       |        |1        |
-|[SC3](problems.md#sc3)                                                   |1.16.0     |       |        |3        |
-|scdhlm                                                                   |0.3.2      |       |        |         |
-|schex                                                                    |1.2.0      |       |        |         |
-|[scone](problems.md#scone)                                               |1.12.0     |       |        |1        |
-|sdcHierarchies                                                           |0.18.2     |       |        |         |
-|sdcMicro                                                                 |5.5.1      |       |        |         |
-|[SDEFSR](problems.md#sdefsr)                                             |0.7.21     |       |        |1        |
-|sdm                                                                      |1.0-89     |       |        |         |
-|[SEA](problems.md#sea)                                                   |1.0        |       |        |1        |
-|searchConsoleR                                                           |0.4.0      |       |        |         |
-|seasonalview                                                             |0.3        |       |        |         |
-|semantic.dashboard                                                       |0.1.5      |       |        |         |
-|[semdrw](problems.md#semdrw)                                             |0.1.0      |       |        |1        |
-|[SemNeT](problems.md#semnet)                                             |1.3.0      |       |        |2        |
-|sen2r                                                                    |1.3.6      |       |        |         |
-|[seqplots](problems.md#seqplots)                                         |1.26.0     |       |        |4        |
-|serieslcb                                                                |0.4.0      |       |        |         |
-|[sglr](problems.md#sglr)                                                 |0.7        |       |        |2        |
-|SHELF                                                                    |1.7.0      |       |        |         |
-|shiny.info                                                               |0.2.0      |       |        |         |
-|[shiny.router](problems.md#shinyrouter)                                  |0.1.1      |       |        |1        |
-|[shiny.semantic](problems.md#shinysemantic)                              |0.3.0      |       |        |1        |
-|[shinyAce](problems.md#shinyace)                                         |0.4.1      |       |        |1        |
-|[shinyaframe](problems.md#shinyaframe)                                   |1.0.1      |       |        |1        |
-|shinyalert                                                               |1.1        |       |        |         |
-|shinyanimate                                                             |0.3.0      |       |        |         |
-|shinybootstrap2                                                          |0.2.1      |       |        |         |
-|[shinybrms](problems.md#shinybrms)                                       |1.1.0      |       |        |1        |
-|[shinyBS](problems.md#shinybs)                                           |0.61       |       |        |1        |
-|shinybusy                                                                |0.2.0      |       |        |         |
-|shinycssloaders                                                          |0.3        |       |        |         |
-|shinycustomloader                                                        |0.9.0      |       |        |         |
-|shinydashboard                                                           |0.7.1      |       |        |         |
-|shinydashboardPlus                                                       |0.7.0      |       |        |         |
-|shinyDND                                                                 |0.1.0      |       |        |         |
-|[shinyEffects](problems.md#shinyeffects)                                 |0.1.0      |       |        |1        |
-|shinyEventLogger                                                         |0.1.1      |       |        |         |
-|shinyFeedback                                                            |0.2.0      |       |        |         |
-|shinyFiles                                                               |0.8.0      |       |        |         |
-|shinyglide                                                               |0.1.2      |       |        |         |
-|shinyHeatmaply                                                           |0.2.0      |       |        |         |
-|[shinyhelper](problems.md#shinyhelper)                                   |0.3.2      |       |        |1        |
-|ShinyImage                                                               |0.1.0      |       |        |         |
-|[ShinyItemAnalysis](problems.md#shinyitemanalysis)                       |1.3.3      |       |        |2        |
-|shinyjqui                                                                |0.3.3      |       |        |         |
-|[shinyjs](problems.md#shinyjs)                                           |1.1        |       |        |1        |
-|[shinyKGode](problems.md#shinykgode)                                     |1.0.5      |       |        |1        |
-|shinyKnobs                                                               |0.1.3      |       |        |         |
-|shinylogs                                                                |0.1.7      |       |        |         |
-|shinyLP                                                                  |1.1.2      |       |        |         |
-|shinymanager                                                             |1.0.200    |       |        |         |
-|shinymaterial                                                            |1.1.0      |       |        |         |
-|shinyMatrix                                                              |0.3.0      |       |        |         |
-|[shinyMethyl](problems.md#shinymethyl)                                   |1.24.0     |1      |        |         |
-|shinyML                                                                  |0.2.0      |       |        |         |
-|shinyMobile                                                              |0.7.0      |       |        |         |
-|shinyMolBio                                                              |0.2        |       |        |         |
-|shinyNotes                                                               |0.0.1      |       |        |         |
-|shinyobjects                                                             |0.1.0      |       |        |         |
-|[shinypanels](problems.md#shinypanels)                                   |0.5.0      |       |        |1        |
-|[shinyr](problems.md#shinyr)                                             |0.2.6      |       |        |1        |
-|[shinyrecap](problems.md#shinyrecap)                                     |0.1.0      |       |        |1        |
-|shinyrecipes                                                             |0.1.0      |       |        |         |
-|shinyreforms                                                             |0.0.1      |       |        |         |
-|shinyRGL                                                                 |0.1.0      |       |        |         |
-|shinySearchbar                                                           |1.0.0      |       |        |         |
-|shinySIR                                                                 |0.1.1      |       |        |         |
-|shinystan                                                                |2.5.0      |       |        |         |
-|[shinyTANDEM](problems.md#shinytandem)                                   |1.26.0     |1      |        |         |
-|shinytest                                                                |1.4.0      |       |        |         |
-|shinythemes                                                              |1.1.2      |       |        |         |
-|shinyTime                                                                |1.0.1      |       |        |         |
-|shinytoastr                                                              |2.1.1      |       |        |         |
-|shinyTree                                                                |0.2.7      |       |        |         |
-|shinyWidgets                                                             |0.5.3      |       |        |         |
-|shinyypr                                                                 |0.0.2      |       |        |         |
-|shotGroups                                                               |0.7.5.1    |       |        |         |
-|[sigmajs](problems.md#sigmajs)                                           |0.1.5      |       |        |1        |
-|sigmaNet                                                                 |1.1.0      |       |        |         |
-|signalHsmm                                                               |1.5        |       |        |         |
-|[SimDesign](problems.md#simdesign)                                       |2.0.1      |       |        |1        |
-|simglm                                                                   |0.8.0      |       |        |         |
-|simPATHy                                                                 |0.4        |       |        |         |
-|[simplevis](problems.md#simplevis)                                       |1.3.0      |       |        |1        |
-|simrel                                                                   |2.0.2      |       |        |         |
-|sinew                                                                    |0.3.8      |       |        |         |
-|SingleCaseES                                                             |0.4.3      |       |        |         |
-|[singleCellTK](problems.md#singlecelltk)                                 |1.8.0      |       |        |3        |
-|sistec                                                                   |0.1.0      |       |        |         |
-|[skeleSim](failures.md#skelesim)                                         |0.9.8      |1      |        |         |
-|[skpr](problems.md#skpr)                                                 |0.64.2     |       |        |2        |
-|SMITIDvisu                                                               |0.0.6      |       |        |         |
-|snahelper                                                                |1.1.0      |       |        |         |
-|snotelr                                                                  |1.0.4      |       |        |         |
-|[soc.ca](problems.md#socca)                                              |0.7.3      |       |        |1        |
-|Sofi                                                                     |0.16.4.8   |       |        |         |
-|[soilcarbon](problems.md#soilcarbon)                                     |1.2.0      |       |        |2        |
-|[sojourner](problems.md#sojourner)                                       |1.2.1      |1      |        |         |
-|solvebio                                                                 |2.7.2      |       |        |         |
-|SOMbrero                                                                 |1.3        |       |        |         |
-|sortable                                                                 |0.4.2      |       |        |         |
-|[soundgen](problems.md#soundgen)                                         |1.7.0      |       |        |1        |
-|[SpaDES.addins](problems.md#spadesaddins)                                |0.1.2      |       |        |1        |
-|Spaniel                                                                  |1.2.0      |       |        |         |
-|spANOVA                                                                  |0.99.2     |       |        |         |
-|[spant](problems.md#spant)                                               |1.6.0      |       |        |1        |
-|sparkline                                                                |2.0        |       |        |         |
-|[sparklyr](problems.md#sparklyr)                                         |1.2.0      |       |        |1        |
-|[sparkTable](problems.md#sparktable)                                     |1.3.0      |       |        |1        |
-|SpatialCPie                                                              |1.4.0      |       |        |         |
-|[SpatialEpiApp](problems.md#spatialepiapp)                               |0.3        |       |        |2        |
-|[spatialLIBD](problems.md#spatiallibd)                                   |1.0.0      |1      |        |1        |
-|[spectrolab](problems.md#spectrolab)                                     |0.0.9      |       |        |1        |
-|spinifex                                                                 |0.2.0      |       |        |         |
-|SpNetPrep                                                                |1.1        |       |        |         |
-|spotGUI                                                                  |0.2.1      |       |        |         |
-|SqlRender                                                                |1.6.6      |       |        |         |
-|squid                                                                    |0.1.2      |       |        |         |
-|[SSDM](problems.md#ssdm)                                                 |0.2.8      |       |        |1        |
-|[ssrch](problems.md#ssrch)                                               |1.4.0      |       |        |2        |
-|[sstModel](problems.md#sstmodel)                                         |1.0.0      |       |        |1        |
-|[STAT](problems.md#stat)                                                 |0.1.0      |       |        |1        |
-|statnetWeb                                                               |0.5.5      |       |        |         |
-|statsr                                                                   |0.2.0      |       |        |         |
-|[steemr](problems.md#steemr)                                             |0.1.3      |       |        |1        |
-|StereoMorph                                                              |1.6.3      |       |        |         |
-|stmgui                                                                   |0.1.6      |       |        |         |
-|[stminsights](problems.md#stminsights)                                   |0.3.0      |       |        |1        |
-|[STMotif](problems.md#stmotif)                                           |2.0.0      |       |        |1        |
-|[strand](problems.md#strand)                                             |0.1.3      |       |        |1        |
-|StratigrapheR                                                            |1.1.0      |       |        |         |
-|[subscreen](problems.md#subscreen)                                       |2.0.1      |       |        |1        |
-|SubVis                                                                   |2.0.2      |       |        |         |
-|swirlify                                                                 |0.5.3      |       |        |         |
-|[tableHTML](problems.md#tablehtml)                                       |2.0.0      |       |        |2        |
-|[tablerDash](problems.md#tablerdash)                                     |0.1.0      |       |        |1        |
-|tabulizer                                                                |0.2.2      |       |        |         |
-|taipan                                                                   |0.1.2      |       |        |         |
-|target                                                                   |1.2.0      |       |        |         |
-|[TAShiny](problems.md#tashiny)                                           |0.1.0      |       |        |1        |
-|[TBSignatureProfiler](problems.md#tbsignatureprofiler)                   |1.0.0      |       |        |1        |
-|[TCGAbiolinksGUI](problems.md#tcgabiolinksgui)                           |1.14.0     |       |        |3        |
-|[TeachBayes](problems.md#teachbayes)                                     |1.0        |       |1       |         |
-|teachingApps                                                             |1.0.8      |       |        |         |
-|[tenXplore](problems.md#tenxplore)                                       |1.10.0     |       |        |1        |
-|[TestDesign](problems.md#testdesign)                                     |1.0.2      |       |        |1        |
-|[testextra](problems.md#testextra)                                       |0.1.0.1    |       |        |1        |
-|[texPreview](problems.md#texpreview)                                     |1.4.4      |       |        |1        |
-|[TFutils](problems.md#tfutils)                                           |1.8.0      |1      |1       |4        |
-|themetagenomics                                                          |1.0.2      |       |        |         |
-|threeBrain                                                               |0.1.7      |       |        |         |
-|[tidycells](problems.md#tidycells)                                       |0.2.2      |2      |        |         |
-|tidycwl                                                                  |1.0.4      |       |        |         |
-|tidyvpc                                                                  |1.0.0      |       |        |         |
-|tigerstats                                                               |0.3.2      |       |        |         |
-|[timeline](problems.md#timeline)                                         |0.9        |       |        |2        |
-|[TimerQuant](problems.md#timerquant)                                     |1.18.0     |       |        |1        |
-|[timeseriesdb](problems.md#timeseriesdb)                                 |0.4.1      |       |        |1        |
-|[timevis](problems.md#timevis)                                           |0.5        |       |        |1        |
-|tippy                                                                    |0.0.1      |       |        |         |
-|tmap                                                                     |3.0        |       |        |         |
-|[tmaptools](problems.md#tmaptools)                                       |3.0        |       |        |1        |
-|TnT                                                                      |1.10.0     |       |        |         |
-|toxEval                                                                  |1.1.0      |       |        |         |
-|[TR8](problems.md#tr8)                                                   |0.9.21     |       |        |1        |
-|trackdem                                                                 |0.5.2      |       |        |         |
-|[trackeRapp](problems.md#trackerapp)                                     |1.1        |       |        |1        |
-|trackr                                                                   |0.10.6     |       |        |         |
-|trade                                                                    |0.5.4      |       |        |         |
-|treemap                                                                  |2.4-2      |       |        |         |
-|TreeSearch                                                               |0.4.1      |       |        |         |
-|[treespace](problems.md#treespace)                                       |1.1.3.2    |       |        |1        |
-|TreeTools                                                                |1.0.0      |       |        |         |
-|Trendy                                                                   |1.10.0     |       |        |         |
-|tricolore                                                                |1.2.2      |       |        |         |
-|[TSCAN](problems.md#tscan)                                               |1.26.0     |       |        |1        |
-|tsviz                                                                    |0.1.0      |       |        |         |
-|[ttestshiny](problems.md#ttestshiny)                                     |0.1.0      |       |        |1        |
-|[TVTB](problems.md#tvtb)                                                 |1.14.0     |       |        |1        |
-|[twoddpcr](problems.md#twoddpcr)                                         |1.12.0     |       |        |1        |
-|[TxRegInfra](problems.md#txreginfra)                                     |1.8.0      |       |        |5        |
-|[ubiquity](problems.md#ubiquity)                                         |1.0.1      |       |        |1        |
-|[UCSCXenaShiny](problems.md#ucscxenashiny)                               |0.5.0      |       |        |2        |
-|UCSCXenaTools                                                            |1.3.1      |       |        |         |
-|[Ularcirc](problems.md#ularcirc)                                         |1.6.0      |1      |        |         |
-|Umatrix                                                                  |3.3        |       |        |         |
-|[ursa](problems.md#ursa)                                                 |3.8.20     |       |        |1        |
-|[VariantFiltering](problems.md#variantfiltering)                         |1.24.0     |1      |        |3        |
-|[VarSelLCM](problems.md#varsellcm)                                       |2.1.3      |       |        |1        |
-|[vdiffr](problems.md#vdiffr)                                             |0.3.2      |       |        |1        |
-|vegawidget                                                               |0.3.1      |       |        |         |
-|vici                                                                     |0.5.2      |       |        |         |
-|VineCopula                                                               |2.3.0      |       |        |         |
-|[viromeBrowser](problems.md#viromebrowser)                               |1.0.0      |       |        |1        |
-|[visit](problems.md#visit)                                               |2.1        |       |        |2        |
-|[visNetwork](problems.md#visnetwork)                                     |2.0.9      |       |        |1        |
-|vistributions                                                            |0.1.1      |       |        |         |
-|visvow                                                                   |0.9.0      |       |        |         |
-|voronoiTreemap                                                           |0.2.0      |       |        |         |
-|VOSONDash                                                                |0.5.4      |       |        |         |
-|vov                                                                      |0.1.0      |       |        |         |
-|vtree                                                                    |4.0.0      |       |        |         |
-|[VTShiny](problems.md#vtshiny)                                           |0.1.0      |       |        |1        |
-|VWPre                                                                    |1.2.3      |       |        |         |
-|[waiter](problems.md#waiter)                                             |0.1.0      |       |        |1        |
-|[wallace](problems.md#wallace)                                           |1.0.6.2    |       |        |1        |
-|[webr](problems.md#webr)                                                 |0.1.5      |       |        |1        |
-|webshot                                                                  |0.5.2      |       |        |         |
-|weco                                                                     |1.2        |       |        |         |
-|weightr                                                                  |2.0.2      |       |        |         |
-|wilson                                                                   |2.4.0      |       |        |         |
-|wiqid                                                                    |0.3.0      |       |        |         |
-|[wiseR](problems.md#wiser)                                               |1.0.1      |       |        |2        |
-|workflowr                                                                |1.6.2      |       |        |         |
-|wppExplorer                                                              |2.3-4      |       |        |         |
-|[wTO](problems.md#wto)                                                   |1.6.3      |       |        |1        |
-|xplorerr                                                                 |0.1.1      |       |        |         |
-|[xROI](problems.md#xroi)                                                 |0.9.13     |       |1       |         |
-|[ymlthis](problems.md#ymlthis)                                           |0.1.2      |       |        |1        |
-|yonder                                                                   |0.2.0      |       |        |         |
-|[yuimaGUI](problems.md#yuimagui)                                         |1.3.0      |       |        |1        |
-|zooimage                                                                 |5.5.2      |       |        |         |
-|zscorer                                                                  |0.3.1      |       |        |         |
+|package    |version |error |warning |note |
+|:----------|:-------|:-----|:-------|:----|
+|ctsem      |3.6.0   |1     |        |     |
+|diveR      |?       |      |        |     |
+|loon.shiny |?       |      |        |     |
+|NA         |?       |      |        |     |
+|SSVS       |?       |      |        |     |
 

revdep/cran.md

@@ -0,0 +1,15 @@
+## revdepcheck results
+
+We checked 1039 reverse dependencies (1038 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+
+ * We saw 0 new problems
+ * We failed to check 4 packages
+
+Issues with CRAN packages are summarised below.
+
+### Failed to check
+
+* ctsem      (NA)
+* diveR      (NA)
+* loon.shiny (NA)
+* SSVS       (NA)

srcts/README.md

@@ -8,7 +8,7 @@ yarn add https://github.com/rstudio/shiny\#v1.7.0
 
 , matching the GitHub tag to your current the Shiny CRAN release (ex: `v1.7.0`).  If you are asked to select a version of `@types/jquery`, please select the closest matching version.
 
-This will provide a global type defintion of `Shiny`, let your IDE know that `window.Shiny` is of type `Shiny`, and declare a globally available variable `Shiny` within your project. You **should not** need to import anything. Similar to `jQuery`, it should _Just Work_<sup>TM</sup>.
+This will provide a global type definition of `Shiny`, let your IDE know that `window.Shiny` is of type `Shiny`, and declare a globally available variable `Shiny` within your project. You **should not** need to import anything. Similar to `jQuery`, it should _Just Work_<sup>TM</sup>.
 
 When loading your compiled file, it should be loaded after `shiny.js` is loaded. If you are using an `htmlDependency()` to add your code to the page, your script will automatically be loaded after has been loaded.
 
@@ -192,7 +192,7 @@ Both JavaScript files will produce a sourcemap (`**.js.map`) that the browser wi
 
 ### Exported types
 
-`./extras/globalShiny.ts` contains global declarations to define `window.Shiny`, a globally available `Shiny` variable, and a globally available `Shiny` type. This file is in a parallel folder to `./src` to avoid `Shiny` from being globally accessable within the source code. However, this file is the default type defintion when the Type definitions are installed by external developers.
+`./extras/globalShiny.ts` contains global declarations to define `window.Shiny`, a globally available `Shiny` variable, and a globally available `Shiny` type. This file is in a parallel folder to `./src` to avoid `Shiny` from being globally accessable within the source code. However, this file is the default type definition when the Type definitions are installed by external developers.
 
 ### GitHub Actions
 

srcts/build/extras.ts

@@ -10,7 +10,7 @@ import babelPlugin from "esbuild-plugin-babel";
 
 build({
   bundle: true,
-  sourcemap: "inline",
+  sourcemap: true,
   minify: true,
   plugins: [babelPlugin()],
   banner: banner,

srcts/extras/shiny-autoreload.ts

@@ -1,14 +1,13 @@
 /* eslint-disable unicorn/filename-case */
-let protocol = "ws:";
+const protocol = (window.location.protocol === "https:") ? "wss:" : "ws:";
+// Add trailing slash to path, if necessary, before appending "autoreload"
+const defaultPath = window.location.pathname.replace(/\/?$/, "/") + "autoreload/";
+const defaultUrl = `${protocol}//${window.location.host}${defaultPath}`;
 
-if (window.location.protocol === "https:") protocol = "wss:";
-
-let defaultPath = window.location.pathname;
-
-if (!/\/$/.test(defaultPath)) defaultPath += "/";
-defaultPath += "autoreload/";
-
-const ws = new WebSocket(protocol + "//" + window.location.host + defaultPath);
+// By default, use the defaultUrl. But if there's a data-ws-url attribute on our
+// <script> tag, use that instead.
+const wsUrl = document.currentScript.dataset.wsUrl || defaultUrl;
+const ws = new WebSocket(wsUrl);
 
 ws.onmessage = function (event) {
   if (event.data === "autoreload") {

srcts/src/bindings/input/inputBinding.ts

@@ -22,7 +22,7 @@ class InputBinding {
     return false;
     el;
   }
-  getValue(el: HTMLElement): unknown {
+  getValue(el: HTMLElement): any {
     throw "Not implemented";
     el; // unused var
   }

srcts/src/bindings/input/selectInput.ts

@@ -64,13 +64,33 @@ class SelectInputBinding extends InputBinding {
   setValue(el: SelectHTMLElement, value: string): void {
     if (!isSelectize(el)) {
       $(el).val(value);
-    } else {
-      const selectize = this._selectize(el);
-
-      if (selectize) {
-        selectize.setValue(value);
-      }
+      return;
     }
+    const selectize = this._selectize(el);
+
+    if (!selectize) return;
+    if (!selectize.settings.load) {
+      selectize.setValue(value);
+      return;
+    }
+
+    window.console.log("Querying server side value:", value);
+
+    const callbackFn = (res) => {
+      if (!res) return;
+      window.console.log("Received server side value:", res);
+
+      if (hasOwnProperty(res, "value")) {
+        selectize.setValue(res.value);
+      } else if (selectize.settings.maxItems === 1) {
+        // first item selected by default only for single-select
+        selectize.setValue(res[0].value);
+      }
+    };
+
+    // Server side filtering
+    selectize.clearOptions();
+    selectize.settings.load.apply(selectize, ["", callbackFn]);
   }
   getState(el: SelectHTMLElement): {
     label: JQuery<HTMLElement>;

srcts/src/events/shinyEvents.ts

@@ -6,11 +6,11 @@ import type { ErrorsMessageValue } from "../shiny/shinyapp";
 interface ShinyEventCommon extends JQuery.Event {
   name: string;
   value: unknown;
-  el: HTMLElement;
+  el: HTMLElement | null;
 }
 interface ShinyEventInputChanged extends ShinyEventCommon {
   value: unknown;
-  binding: InputBinding;
+  binding: InputBinding | null;
   inputType: string;
   priority: EventPriority;
 }

srcts/src/imageutils/createClickInfo.ts

@@ -14,7 +14,7 @@ function createClickInfo(
   mousedown: (e: JQuery.MouseDownEvent) => void;
   dblclickIE8: (e: JQuery.DoubleClickEvent) => void;
 } {
-  let clickTimer = null;
+  let clickTimer: ReturnType<typeof setTimeout> = null;
   let pendingE: JQuery.MouseDownEvent = null; // A pending mousedown2 event
 
   // Create a new event of type eventType (like 'mousedown2'), and trigger

srcts/src/imageutils/createHandlers.ts

@@ -7,6 +7,7 @@ import type { BoundsCss, Bounds, BrushOpts } from "./createBrush";
 import type { Offset } from "./findbox";
 import type { Coordmap } from "./initCoordmap";
 import type { Panel } from "./initPanelScales";
+import type { InputRatePolicy } from "../inputPolicies";
 
 // ----------------------------------------------------------
 // Handler creators for click, hover, brush.
@@ -83,7 +84,7 @@ function createHoverHandler(
     nullOutside
   );
 
-  let hoverInfoSender: Debouncer | Throttler;
+  let hoverInfoSender: InputRatePolicy<typeof sendHoverInfo>;
 
   if (delayType === "throttle")
     hoverInfoSender = new Throttler(null, sendHoverInfo, delay);

srcts/src/imageutils/initCoordmap.ts

@@ -118,7 +118,7 @@ type Coordmap = {
     inputId: string,
     clip?: boolean,
     nullOutside?: boolean
-  ) => (e: JQuery.MouseDownEvent) => void;
+  ) => (e: JQuery.MouseDownEvent | JQuery.MouseMoveEvent) => void;
 };
 
 // This adds functions to the coordmap object to handle various

srcts/src/inputPolicies/index.ts

@@ -5,8 +5,9 @@ import { InputRateDecorator } from "./inputRateDecorator";
 import { InputDeferDecorator } from "./inputDeferDecorator";
 import { InputValidateDecorator } from "./inputValidateDecorator";
 
-import { InputPolicy } from "./inputPolicy";
+import type { InputPolicy } from "./inputPolicy";
 import type { EventPriority } from "./inputPolicy";
+import type { InputRatePolicy } from "./inputRatePolicy";
 
 export {
   InputBatchSender,
@@ -15,7 +16,6 @@ export {
   InputRateDecorator,
   InputDeferDecorator,
   InputValidateDecorator,
-  InputPolicy,
 };
 
-export type { EventPriority };
+export type { InputPolicy, EventPriority, InputRatePolicy };

srcts/src/inputPolicies/inputBatchSender.ts

@@ -1,27 +1,21 @@
-import $ from "jquery";
-import type { EventPriority } from "./inputPolicy";
-import { InputPolicy } from "./inputPolicy";
+import type { InputPolicy, InputPolicyOpts } from "./inputPolicy";
 import type { ShinyApp } from "../shiny/shinyapp";
 
 // Schedules data to be sent to shinyapp at the next setTimeout(0).
 // Batches multiple input calls into one websocket message.
-class InputBatchSender extends InputPolicy {
+class InputBatchSender implements InputPolicy {
+  target!: InputPolicy; // We need this field to satisfy the InputPolicy interface
   shinyapp: ShinyApp;
-  timerId: NodeJS.Timeout = null;
+  timerId: ReturnType<typeof setTimeout> | null = null;
   pendingData: { [key: string]: unknown } = {};
   reentrant = false;
   lastChanceCallback: Array<() => void> = [];
 
   constructor(shinyapp: ShinyApp) {
-    super();
     this.shinyapp = shinyapp;
   }
 
-  setInput(
-    nameType: string,
-    value: unknown,
-    opts: { priority: EventPriority }
-  ): void {
+  setInput(nameType: string, value: unknown, opts: InputPolicyOpts): void {
     this.pendingData[nameType] = value;
 
     if (!this.reentrant) {
@@ -41,9 +35,7 @@ class InputBatchSender extends InputPolicy {
     this.reentrant = true;
     try {
       this.timerId = null;
-      $.each(this.lastChanceCallback, (i, callback) => {
-        callback();
-      });
+      this.lastChanceCallback.forEach((callback) => callback());
       const currentData = this.pendingData;
 
       this.pendingData = {};

srcts/src/inputPolicies/inputDeferDecorator.ts

@@ -1,21 +1,18 @@
 import type { EventPriority } from "./inputPolicy";
-import { InputPolicy } from "./inputPolicy";
+import type { InputPolicy, InputPolicyOpts } from "./inputPolicy";
 import { hasOwnProperty } from "../utils";
 
-class InputDeferDecorator extends InputPolicy {
+class InputDeferDecorator implements InputPolicy {
   pendingInput: {
     [key: string]: { value: unknown; opts: { priority: EventPriority } };
   } = {};
+  target: InputPolicy;
+
   constructor(target: InputPolicy) {
-    super();
     this.target = target;
   }
 
-  setInput(
-    nameType: string,
-    value: unknown,
-    opts: { priority: EventPriority }
-  ): void {
+  setInput(nameType: string, value: unknown, opts: InputPolicyOpts): void {
     if (/^\./.test(nameType)) this.target.setInput(nameType, value, opts);
     else this.pendingInput[nameType] = { value, opts };
   }

srcts/src/inputPolicies/inputEventDecorator.ts

@@ -1,25 +1,16 @@
 import $ from "jquery";
-import type { EventPriority } from "./inputPolicy";
-import { InputPolicy } from "./inputPolicy";
-import type { InputBinding } from "../bindings";
+import type { InputPolicy, InputPolicyOpts } from "./inputPolicy";
 import type { ShinyEventInputChanged } from "../events/shinyEvents";
 import { splitInputNameType } from "./splitInputNameType";
 
-class InputEventDecorator extends InputPolicy {
+class InputEventDecorator implements InputPolicy {
+  target: InputPolicy;
+
   constructor(target: InputPolicy) {
-    super();
     this.target = target;
   }
 
-  setInput(
-    nameType: string,
-    value: unknown,
-    opts: {
-      el: HTMLElement;
-      priority: EventPriority;
-      binding: InputBinding;
-    }
-  ): void {
+  setInput(nameType: string, value: unknown, opts: InputPolicyOpts): void {
     const evt = jQuery.Event("shiny:inputchanged") as ShinyEventInputChanged;
 
     const input = splitInputNameType(nameType);
@@ -27,11 +18,15 @@ class InputEventDecorator extends InputPolicy {
     evt.name = input.name;
     evt.inputType = input.inputType;
     evt.value = value;
-    evt.binding = opts.binding;
-    evt.el = opts.el;
+    evt.binding = opts.binding || null;
+    evt.el = opts.el || null;
     evt.priority = opts.priority;
 
-    $(opts.el).trigger(evt);
+    // The `shiny:inputchanged` JavaScript event now triggers on the related
+    // input element instead of `document`. Existing event listeners bound to
+    // `document` will still detect the event due to event bubbling. #2446
+    // If no `el` exists, use `document` instead. #3584
+    $(opts.el || window.document).trigger(evt);
 
     if (!evt.isDefaultPrevented()) {
       let name = evt.name;

srcts/src/inputPolicies/inputNoResendDecorator.ts

@@ -1,24 +1,19 @@
-import type { EventPriority } from "./inputPolicy";
-import { InputPolicy } from "./inputPolicy";
+import type { InputPolicy, InputPolicyOpts } from "./inputPolicy";
 import { hasOwnProperty } from "../utils";
 import { splitInputNameType } from "./splitInputNameType";
 
 type LastSentValues = { [key: string]: { [key: string]: string } };
 
-class InputNoResendDecorator extends InputPolicy {
-  lastSentValues: LastSentValues;
+class InputNoResendDecorator implements InputPolicy {
+  target: InputPolicy;
+  lastSentValues: LastSentValues = {};
 
   constructor(target: InputPolicy, initialValues: LastSentValues = {}) {
-    super();
     this.target = target;
     this.reset(initialValues);
   }
 
-  setInput(
-    nameType: string,
-    value: unknown,
-    opts: { priority: EventPriority }
-  ): void {
+  setInput(nameType: string, value: unknown, opts: InputPolicyOpts): void {
     const { name: inputName, inputType: inputType } =
       splitInputNameType(nameType);
     const jsonValue = JSON.stringify(value);
@@ -34,13 +29,15 @@ class InputNoResendDecorator extends InputPolicy {
     this.lastSentValues[inputName] = { jsonValue, inputType };
     this.target.setInput(nameType, value, opts);
   }
-  reset(values = {}): void {
+  reset(values: LastSentValues = {}): void {
     // Given an object with flat name-value format:
     //   { x: "abc", "y.shiny.number": 123 }
     // Create an object in cache format and save it:
     //   { x: { jsonValue: '"abc"', inputType: "" },
     //     y: { jsonValue: "123", inputType: "shiny.number" } }
-    const cacheValues = {};
+    const cacheValues: {
+      [key: string]: { jsonValue: string; inputType: string };
+    } = {};
 
     for (const inputName in values) {
       if (hasOwnProperty(values, inputName)) {

srcts/src/inputPolicies/inputPolicy.ts

@@ -1,21 +1,19 @@
+import type { InputBinding } from "../bindings";
+
 type EventPriority = "deferred" | "event" | "immediate";
 
+type InputPolicyOpts = {
+  priority: EventPriority;
+  el?: HTMLElement;
+  binding?: InputBinding;
+};
+
 // Schedules data to be sent to shinyapp at the next setTimeout(0).
 // Batches multiple input calls into one websocket message.
-class InputPolicy {
+interface InputPolicy {
   target: InputPolicy;
 
-  setInput(
-    name: string,
-    value: unknown,
-    opts: { priority: EventPriority }
-  ): void {
-    throw "not implemented";
-    name;
-    value;
-    opts;
-  }
+  setInput(name: string, value: unknown, opts: InputPolicyOpts): void;
 }
 
-export { InputPolicy };
-export type { EventPriority };
+export type { InputPolicy, EventPriority, InputPolicyOpts };

srcts/src/inputPolicies/inputRateDecorator.ts

@@ -1,14 +1,17 @@
-import type { EventPriority } from "./inputPolicy";
-import { InputPolicy } from "./inputPolicy";
+import type { InputPolicy, InputPolicyOpts } from "./inputPolicy";
 import { Debouncer, Invoker, Throttler } from "../time";
 import { splitInputNameType } from "./splitInputNameType";
+import type { InputRatePolicy } from "./inputRatePolicy";
 
 type RatePolicyModes = "debounce" | "direct" | "throttle";
-class InputRateDecorator extends InputPolicy {
-  inputRatePolicies = {};
+
+class InputRateDecorator implements InputPolicy {
+  target: InputPolicy;
+  inputRatePolicies: {
+    [key: string]: InputRatePolicy<InputRateDecorator["_doSetInput"]>;
+  } = {};
 
   constructor(target: InputPolicy) {
-    super();
     this.target = target;
   }
 
@@ -18,11 +21,7 @@ class InputRateDecorator extends InputPolicy {
   // However, $ensureInit() and $doSetInput() are meant to be passed just
   // the input name (i.e., inputId), which is why we distinguish between
   // nameType and name.
-  setInput(
-    nameType: string,
-    value: unknown,
-    opts: { priority: EventPriority }
-  ): void {
+  setInput(nameType: string, value: unknown, opts: InputPolicyOpts): void {
     const { name: inputName } = splitInputNameType(nameType);
 
     this._ensureInit(inputName);
@@ -60,7 +59,7 @@ class InputRateDecorator extends InputPolicy {
   private _doSetInput(
     nameType: string,
     value: unknown,
-    opts: { priority: EventPriority }
+    opts: InputPolicyOpts
   ): void {
     this.target.setInput(nameType, value, opts);
   }