Grunt

- Simplified dragHover "plugin" by counting children instead of storing them.
  Counting children fixes Firefox 57+ bug (to be found or filed) that causes
  text object of input element to produce drag events
- Removed multimethod since it's no longer used anywhere
- Firefox 57+ appears not to trigger a change event when the `files` field is modified,
  which prevented uploads from occuring. This commit triggers a change event manually
  and doesn't impact the functioning of other browsers.

.Rbuildignore

@@ -18,3 +18,5 @@
 ^.*\.o$
 ^appveyor\.yml$
 ^revdep$
+^TODO-promises.md$
+^manualtests$

.travis.yml

@@ -10,8 +10,3 @@ notifications:
   email:
     on_success: change
     on_failure: change
-
-# Set CXX1X for R-devel, as R-devel does not detect CXX1X support for gcc 4.6.3.
-# This was causing dependency sourcetools to fail.
-before_install:
-  - if [[ "$TRAVIS_R_VERSION_STRING" = 'devel' ]]; then mkdir ~/.R && echo 'CXX1X=g++ -std=c++0x -g -O2 -fPIC' > ~/.R/Makevars; fi

CONTRIBUTING.md

@@ -1,10 +1,38 @@
-
 We welcome contributions to the **shiny** package. To submit a contribution:
 
 1. [Fork](https://github.com/rstudio/shiny/fork) the repository and make your changes.
 
-2. Ensure that you have signed the [individual](http://www.rstudio.com/wp-content/uploads/2014/06/RStudioIndividualContributorAgreement.pdf) or [corporate](http://www.rstudio.com/wp-content/uploads/2014/06/RStudioCorporateContributorAgreement.pdf) contributor agreement as appropriate. You can send the signed copy to jj@rstudio.com.
+2. Ensure that you have signed the [individual](https://rstudioblog.files.wordpress.com/2017/05/rstudio_individual_contributor_agreement.pdf) or [corporate](https://rstudioblog.files.wordpress.com/2017/05/rstudio_corporate_contributor_agreement.pdf) contributor agreement as appropriate. You can send the signed copy to jj@rstudio.com.
 
 3. Submit a [pull request](https://help.github.com/articles/using-pull-requests).
 
-We'll try to be as responsive as possible in reviewing and accepting pull requests. We appreciate your contributions!
+We generally do not merge pull requests that update included web libraries (such as Bootstrap or jQuery) because it is difficult for us to verify that the update is done correctly; we prefer to update these libraries ourselves.
+
+
+## How to make changes
+
+Before you submit a pull request, please do the following:
+
+* Add an entry to NEWS.md concisely describing what you changed.
+
+* If appropriate, add unit tests in the tests/ directory.
+
+* If you made any changes to the JavaScript files in the srcjs/ directory, make sure you build the output JavaScript files. See tools/README.md file for information on using the build system.
+
+* Run Build->Check Package in the RStudio IDE, or `devtools::check()`, to make sure your change did not add any messages, warnings, or errors.
+
+Doing these things will make it easier for the Shiny development team to evaluate your pull request. Even so, we may still decide to modify your code or even not merge it at all. Factors that may prevent us from merging the pull request include:
+
+* breaking backward compatibility
+* adding a feature that we do not consider relevant for Shiny
+* is hard to understand
+* is hard to maintain in the future
+* is computationally expensive
+* is not intuitive for people to use
+
+We will try to be responsive and provide feedback in case we decide not to merge your pull request.
+
+
+## Filing issues
+
+If you find a bug in Shiny, you can also [file an issue](https://github.com/rstudio/shiny/issues/new). Please provide as much relevant information as you can, and include a minimal reproducible example if possible.

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: shiny
 Type: Package
 Title: Web Application Framework for R
-Version: 0.14
+Version: 1.2.0
 Authors@R: c(
     person("Winston", "Chang", role = c("aut", "cre"), email = "winston@rstudio.com"),
     person("Joe", "Cheng", role = "aut", email = "joe@rstudio.com"),
@@ -14,7 +14,7 @@ Authors@R: c(
     person(family = "jQuery contributors", role = c("ctb", "cph"),
     comment = "jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt"),
     person(family = "jQuery UI contributors", role = c("ctb", "cph"),
-    comment = "jQuery UI library; authors listed in inst/www/shared/jqueryui/1.10.4/AUTHORS.txt"),
+    comment = "jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt"),
     person("Mark", "Otto", role = "ctb",
     comment = "Bootstrap library"),
     person("Jacob", "Thornton", role = "ctb",
@@ -56,22 +56,28 @@ Authors@R: c(
     )
 Description: Makes it incredibly easy to build interactive web
     applications with R. Automatic "reactive" binding between inputs and
-    outputs and extensive pre-built widgets make it possible to build
+    outputs and extensive prebuilt widgets make it possible to build
     beautiful, responsive, and powerful applications with minimal effort.
 License: GPL-3 | file LICENSE
 Depends:
-    R (>= 3.0.0),
+    R (>= 3.0.2),
     methods
 Imports:
     utils,
-    httpuv (>= 1.3.3),
+    grDevices,
+    httpuv (>= 1.4.4),
     mime (>= 0.3),
     jsonlite (>= 0.9.16),
     xtable,
     digest,
     htmltools (>= 0.3.5),
     R6 (>= 2.0),
-    sourcetools
+    sourcetools,
+    later (>= 0.7.2),
+    promises (>= 1.0.1),
+    tools,
+    crayon,
+    rlang
 Suggests:
     datasets,
     Cairo (>= 1.5-5),
@@ -79,7 +85,8 @@ Suggests:
     knitr (>= 1.6),
     markdown,
     rmarkdown,
-    ggplot2
+    ggplot2,
+    magrittr
 URL: http://shiny.rstudio.com
 BugReports: https://github.com/rstudio/shiny/issues
 Collate:
@@ -88,15 +95,21 @@ Collate:
     'stack.R'
     'bookmark-state.R'
     'bootstrap-layout.R'
+    'globals.R'
     'conditions.R'
     'map.R'
-    'globals.R'
     'utils.R'
     'bootstrap.R'
-    'cache.R'
+    'cache-context.R'
+    'cache-disk.R'
+    'cache-memory.R'
+    'cache-utils.R'
     'diagnose.R'
     'fileupload.R'
     'graph.R'
+    'reactives.R'
+    'reactive-domains.R'
+    'history.R'
     'hooks.R'
     'html-deps.R'
     'htmltools.R'
@@ -118,6 +131,7 @@ Collate:
     'input-text.R'
     'input-textarea.R'
     'input-utils.R'
+    'insert-tab.R'
     'insert-ui.R'
     'jqueryui.R'
     'middleware-shiny.R'
@@ -128,8 +142,7 @@ Collate:
     'priorityqueue.R'
     'progress.R'
     'react.R'
-    'reactive-domains.R'
-    'reactives.R'
+    'render-cached-plot.R'
     'render-plot.R'
     'render-table.R'
     'run-url.R'
@@ -141,7 +154,9 @@ Collate:
     'shinyui.R'
     'shinywrappers.R'
     'showcase.R'
+    'snapshot.R'
     'tar.R'
+    'test-export.R'
     'timer.R'
     'update-input.R'
-RoxygenNote: 5.0.1
+RoxygenNote: 6.1.0

LICENSE

@@ -12,7 +12,7 @@ these components are included below):
 - Respond.js, https://github.com/scottjehl/Respond
 - bootstrap-datepicker, https://github.com/eternicode/bootstrap-datepicker
 - Font Awesome, https://github.com/FortAwesome/Font-Awesome
-- selectize.js, https://github.com/brianreavis/selectize.js
+- selectize.js, https://github.com/selectize/selectize.js
 - es5-shim, https://github.com/es-shims/es5-shim
 - ion.rangeSlider, https://github.com/IonDen/ion.rangeSlider
 - strftime for Javascript, https://github.com/samsonjs/strftime
@@ -673,7 +673,7 @@ bootstrap-datepicker
    limitations under the License.
 
 
-Font-Awesome (CSS file is MIT licensed; font has SIL Open Font License 1.1)
+Font Awesome (CSS files are MIT licensed; fonts have SIL Open Font License 1.1, svgs have CC BY 4.0 License)
 ----------------------------------------------------------------------
 
 The MIT License (MIT)
@@ -795,6 +795,326 @@ DAMAGES, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
 FROM, OUT OF THE USE OR INABILITY TO USE THE FONT SOFTWARE OR FROM
 OTHER DEALINGS IN THE FONT SOFTWARE.
 
+=======================================================================
+
+Creative Commons Attribution 4.0 International Public License
+
+By exercising the Licensed Rights (defined below), You accept and agree
+to be bound by the terms and conditions of this Creative Commons
+Attribution 4.0 International Public License ("Public License"). To the
+extent this Public License may be interpreted as a contract, You are
+granted the Licensed Rights in consideration of Your acceptance of
+these terms and conditions, and the Licensor grants You such rights in
+consideration of benefits the Licensor receives from making the
+Licensed Material available under these terms and conditions.
+
+
+Section 1 -- Definitions.
+
+  a. Adapted Material means material subject to Copyright and Similar
+     Rights that is derived from or based upon the Licensed Material
+     and in which the Licensed Material is translated, altered,
+     arranged, transformed, or otherwise modified in a manner requiring
+     permission under the Copyright and Similar Rights held by the
+     Licensor. For purposes of this Public License, where the Licensed
+     Material is a musical work, performance, or sound recording,
+     Adapted Material is always produced where the Licensed Material is
+     synched in timed relation with a moving image.
+
+  b. Adapter's License means the license You apply to Your Copyright
+     and Similar Rights in Your contributions to Adapted Material in
+     accordance with the terms and conditions of this Public License.
+
+  c. Copyright and Similar Rights means copyright and/or similar rights
+     closely related to copyright including, without limitation,
+     performance, broadcast, sound recording, and Sui Generis Database
+     Rights, without regard to how the rights are labeled or
+     categorized. For purposes of this Public License, the rights
+     specified in Section 2(b)(1)-(2) are not Copyright and Similar
+     Rights.
+
+  d. Effective Technological Measures means those measures that, in the
+     absence of proper authority, may not be circumvented under laws
+     fulfilling obligations under Article 11 of the WIPO Copyright
+     Treaty adopted on December 20, 1996, and/or similar international
+     agreements.
+
+  e. Exceptions and Limitations means fair use, fair dealing, and/or
+     any other exception or limitation to Copyright and Similar Rights
+     that applies to Your use of the Licensed Material.
+
+  f. Licensed Material means the artistic or literary work, database,
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+          Exceptions and Limitations apply to Your use, this Public
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+          6(a).
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+       1. If You Share the Licensed Material (including in modified
+          form), You must:
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+                    designated);
+
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+                    warranties;
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+
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+               retain an indication of any previous modifications; and
+
+            c. indicate the Licensed Material is licensed under this
+               Public License, and include the text of, or the URI or
+               hyperlink to, this Public License.
+
+       2. You may satisfy the conditions in Section 3(a)(1) in any
+          reasonable manner based on the medium, means, and context in
+          which You Share the Licensed Material. For example, it may be
+          reasonable to satisfy the conditions by providing a URI or
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+          information required by Section 3(a)(1)(A) to the extent
+          reasonably practicable.
+
+       4. If You Share Adapted Material You produce, the Adapter's
+          License You apply must not prevent recipients of the Adapted
+          Material from complying with this Public License.
+
+
+Section 4 -- Sui Generis Database Rights.
+
+Where the Licensed Rights include Sui Generis Database Rights that
+apply to Your use of the Licensed Material:
+
+  a. for the avoidance of doubt, Section 2(a)(1) grants You the right
+     to extract, reuse, reproduce, and Share all or a substantial
+     portion of the contents of the database;
+
+  b. if You include all or a substantial portion of the database
+     contents in a database in which You have Sui Generis Database
+     Rights, then the database in which You have Sui Generis Database
+     Rights (but not its individual contents) is Adapted Material; and
+
+  c. You must comply with the conditions in Section 3(a) if You Share
+     all or a substantial portion of the contents of the database.
+
+For the avoidance of doubt, this Section 4 supplements and does not
+replace Your obligations under this Public License where the Licensed
+Rights include other Copyright and Similar Rights.
+
+
+Section 5 -- Disclaimer of Warranties and Limitation of Liability.
+
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+     EXTENT POSSIBLE, THE LICENSOR OFFERS THE LICENSED MATERIAL AS-IS
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+
+  b. TO THE EXTENT POSSIBLE, IN NO EVENT WILL THE LICENSOR BE LIABLE
+     TO YOU ON ANY LEGAL THEORY (INCLUDING, WITHOUT LIMITATION,
+     NEGLIGENCE) OR OTHERWISE FOR ANY DIRECT, SPECIAL, INDIRECT,
+     INCIDENTAL, CONSEQUENTIAL, PUNITIVE, EXEMPLARY, OR OTHER LOSSES,
+     COSTS, EXPENSES, OR DAMAGES ARISING OUT OF THIS PUBLIC LICENSE OR
+     USE OF THE LICENSED MATERIAL, EVEN IF THE LICENSOR HAS BEEN
+     ADVISED OF THE POSSIBILITY OF SUCH LOSSES, COSTS, EXPENSES, OR
+     DAMAGES. WHERE A LIMITATION OF LIABILITY IS NOT ALLOWED IN FULL OR
+     IN PART, THIS LIMITATION MAY NOT APPLY TO YOU.
+
+  c. The disclaimer of warranties and limitation of liability provided
+     above shall be interpreted in a manner that, to the extent
+     possible, most closely approximates an absolute disclaimer and
+     waiver of all liability.
+
+
+Section 6 -- Term and Termination.
+
+  a. This Public License applies for the term of the Copyright and
+     Similar Rights licensed here. However, if You fail to comply with
+     this Public License, then Your rights under this Public License
+     terminate automatically.
+
+  b. Where Your right to use the Licensed Material has terminated under
+     Section 6(a), it reinstates:
+
+       1. automatically as of the date the violation is cured, provided
+          it is cured within 30 days of Your discovery of the
+          violation; or
+
+       2. upon express reinstatement by the Licensor.
+
+     For the avoidance of doubt, this Section 6(b) does not affect any
+     right the Licensor may have to seek remedies for Your violations
+     of this Public License.
+
+  c. For the avoidance of doubt, the Licensor may also offer the
+     Licensed Material under separate terms or conditions or stop
+     distributing the Licensed Material at any time; however, doing so
+     will not terminate this Public License.
+
+  d. Sections 1, 5, 6, 7, and 8 survive termination of this Public
+     License.
+
+
+Section 7 -- Other Terms and Conditions.
+
+  a. The Licensor shall not be bound by any additional or different
+     terms or conditions communicated by You unless expressly agreed.
+
+  b. Any arrangements, understandings, or agreements regarding the
+     Licensed Material not stated herein are separate from and
+     independent of the terms and conditions of this Public License.
+
+
+Section 8 -- Interpretation.
+
+  a. For the avoidance of doubt, this Public License does not, and
+     shall not be interpreted to, reduce, limit, restrict, or impose
+     conditions on any use of the Licensed Material that could lawfully
+     be made without permission under this Public License.
+
+  b. To the extent possible, if any provision of this Public License is
+     deemed unenforceable, it shall be automatically reformed to the
+     minimum extent necessary to make it enforceable. If the provision
+     cannot be reformed, it shall be severed from this Public License
+     without affecting the enforceability of the remaining terms and
+     conditions.
+
+  c. No term or condition of this Public License will be waived and no
+     failure to comply consented to unless expressly agreed to by the
+     Licensor.
+
+  d. Nothing in this Public License constitutes or may be interpreted
+     as a limitation upon, or waiver of, any privileges and immunities
+     that apply to the Licensor or You, including from the legal
+     processes of any jurisdiction or authority.
+
 
 selectize.js
 ----------------------------------------------------------------------

NAMESPACE

@@ -22,7 +22,10 @@ S3method(as.shiny.appobj,list)
 S3method(as.shiny.appobj,shiny.appobj)
 S3method(as.tags,shiny.appobj)
 S3method(as.tags,shiny.render.function)
+S3method(format,reactiveExpr)
+S3method(format,reactiveVal)
 S3method(names,reactivevalues)
+S3method(print,key_missing)
 S3method(print,reactive)
 S3method(print,shiny.appobj)
 S3method(str,reactivevalues)
@@ -38,6 +41,7 @@ export(actionButton)
 export(actionLink)
 export(addResourcePath)
 export(animationOptions)
+export(appendTab)
 export(as.shiny.appobj)
 export(basicPage)
 export(bookmarkButton)
@@ -56,12 +60,15 @@ export(code)
 export(column)
 export(conditionStackTrace)
 export(conditionalPanel)
+export(createRenderFunction)
 export(createWebDependency)
 export(dataTableOutput)
 export(dateInput)
 export(dateRangeInput)
 export(dblclickOpts)
+export(debounce)
 export(dialogViewer)
+export(diskCache)
 export(div)
 export(downloadButton)
 export(downloadHandler)
@@ -69,6 +76,7 @@ export(downloadLink)
 export(em)
 export(enableBookmarking)
 export(eventReactive)
+export(exportTestValues)
 export(exprToFunction)
 export(extractStackTrace)
 export(fileInput)
@@ -82,9 +90,13 @@ export(flowLayout)
 export(fluidPage)
 export(fluidRow)
 export(formatStackTrace)
+export(freezeReactiveVal)
 export(freezeReactiveValue)
+export(getCurrentOutputInfo)
 export(getDefaultReactiveDomain)
+export(getQueryString)
 export(getShinyOption)
+export(getUrlHash)
 export(h1)
 export(h2)
 export(h3)
@@ -93,6 +105,7 @@ export(h5)
 export(h6)
 export(headerPanel)
 export(helpText)
+export(hideTab)
 export(hoverOpts)
 export(hr)
 export(htmlOutput)
@@ -107,15 +120,19 @@ export(includeMarkdown)
 export(includeScript)
 export(includeText)
 export(inputPanel)
+export(insertTab)
 export(insertUI)
 export(installExprFunction)
 export(invalidateLater)
+export(is.key_missing)
 export(is.reactive)
 export(is.reactivevalues)
 export(is.shiny.appobj)
 export(is.singleton)
+export(isRunning)
 export(isTruthy)
 export(isolate)
+export(key_missing)
 export(knit_print.html)
 export(knit_print.reactive)
 export(knit_print.shiny.appobj)
@@ -126,6 +143,7 @@ export(mainPanel)
 export(makeReactiveBinding)
 export(markRenderFunction)
 export(maskReactiveContext)
+export(memoryCache)
 export(modalButton)
 export(modalDialog)
 export(navbarMenu)
@@ -145,6 +163,7 @@ export(onReactiveDomainEnded)
 export(onRestore)
 export(onRestored)
 export(onSessionEnded)
+export(onStop)
 export(outputOptions)
 export(p)
 export(pageWithSidebar)
@@ -154,6 +173,7 @@ export(passwordInput)
 export(plotOutput)
 export(plotPNG)
 export(pre)
+export(prependTab)
 export(printError)
 export(printStackTrace)
 export(radioButtons)
@@ -166,13 +186,16 @@ export(reactiveTable)
 export(reactiveText)
 export(reactiveTimer)
 export(reactiveUI)
+export(reactiveVal)
 export(reactiveValues)
 export(reactiveValuesToList)
 export(registerInputHandler)
 export(removeInputHandler)
 export(removeModal)
 export(removeNotification)
+export(removeTab)
 export(removeUI)
+export(renderCachedPlot)
 export(renderDataTable)
 export(renderImage)
 export(renderPlot)
@@ -195,6 +218,7 @@ export(selectizeInput)
 export(serverInfo)
 export(setBookmarkExclude)
 export(setProgress)
+export(setSerializer)
 export(shinyApp)
 export(shinyAppDir)
 export(shinyAppFile)
@@ -205,10 +229,15 @@ export(showBookmarkUrlModal)
 export(showModal)
 export(showNotification)
 export(showReactLog)
+export(showTab)
 export(sidebarLayout)
 export(sidebarPanel)
 export(singleton)
+export(sizeGrowthRatio)
 export(sliderInput)
+export(snapshotExclude)
+export(snapshotPreprocessInput)
+export(snapshotPreprocessOutput)
 export(span)
 export(splitLayout)
 export(stopApp)
@@ -228,6 +257,7 @@ export(tags)
 export(textAreaInput)
 export(textInput)
 export(textOutput)
+export(throttle)
 export(titlePanel)
 export(uiOutput)
 export(updateActionButton)
@@ -246,9 +276,13 @@ export(updateSliderInput)
 export(updateTabsetPanel)
 export(updateTextAreaInput)
 export(updateTextInput)
+export(updateVarSelectInput)
+export(updateVarSelectizeInput)
 export(urlModal)
 export(validate)
 export(validateCssUnit)
+export(varSelectInput)
+export(varSelectizeInput)
 export(verbatimTextOutput)
 export(verticalLayout)
 export(wellPanel)
@@ -264,3 +298,5 @@ import(httpuv)
 import(methods)
 import(mime)
 import(xtable)
+importFrom(grDevices,dev.cur)
+importFrom(grDevices,dev.set)

NEWS.md

@@ -1,5 +1,441 @@
+shiny 1.2.0
+===========
+
+This release features plot caching, an important new tool for improving performance and scalability. Using `renderCachedPlot` in place of `renderPlot` can greatly improve responsiveness for apps that show the same plot many times (for example, a dashboard or report where all users view the same data). Shiny gives you a fair amount of control in where the cache is stored and how cached plots are invalidated, so be sure to read [this article](http://shiny.rstudio.com/articles/plot-caching.html) to get the most out of this feature.
+
+## Full changelog
+
+### New features
+
+* Added `renderCachedPlot()`, which stores plots in a cache so that they can be served up almost instantly. ([#1997](https://github.com/rstudio/shiny/pull/1997))
+
+### Minor new features and improvements
+
+* Upgrade FontAwesome from 4.7.0 to 5.3.1 and made `icon` tags browsable [#2186](https://github.com/rstudio/shiny/issues/2186).
+
+* Address [#174](https://github.com/rstudio/shiny/issues/174): Added `datesdisabled` and `daysofweekdisabled` as new parameters to `dateInput()`. This resolves [#174](https://github.com/rstudio/shiny/issues/174) and exposes the underlying arguments of [Bootstrap Datepicker](http://bootstrap-datepicker.readthedocs.io/en/latest/options.html#datesdisabled). `datesdisabled` expects a character vector with values in `yyyy/mm/dd` format and `daysofweekdisabled` expects an integer vector with day interger ids (Sunday=0, Saturday=6). The default value for both is `NULL`, which leaves all days selectable. Thanks, @nathancday! ([#2147](https://github.com/rstudio/shiny/pull/2147))
+
+* Support for selecting variables of a data frame with the output values to be used within tidy evaluation.  Added functions: `varSelectInput`, `varSelectizeInput`, `updateVarSelectInput`, `updateVarSelectizeInput`. ([#2091](https://github.com/rstudio/shiny/pull/2091))
+
+* Addressed [#2042](https://github.com/rstudio/shiny/issues/2042): dates outside of `min`/`max` date range are now a lighter shade of grey to highlight the allowed range. ([#2087](https://github.com/rstudio/shiny/pull/2087))
+
+* Added support for plot interaction when the plot is scaled. ([#2125](https://github.com/rstudio/shiny/pull/2125))
+
+* Fixed [#1933](https://github.com/rstudio/shiny/issues/1933): extended server-side selectize to lists and optgroups. ([#2102](https://github.com/rstudio/shiny/pull/2102))
+
+* Added namespace support when freezing reactiveValue keys. [#2080](https://github.com/rstudio/shiny/pull/2080)
+
+* Upgrade selectize.js from 0.12.1 to 0.12.4 [#2028](https://github.com/rstudio/shiny/issues/2028)
+
+* Addressed [#2079](https://github.com/rstudio/shiny/issues/2079): Added `coords_img`, `coords_css`, and `img_css_ratio` fields containing x and y location information for plot brush, hover, and click events. [#2183](https://github.com/rstudio/shiny/pull/2183)
+
+### Bug fixes
+
+* Fixed [#2033](https://github.com/rstudio/shiny/issues/2033): RStudio Viewer window not closed on `shiny::stopApp()`. Thanks, @vnijs! [#2047](https://github.com/rstudio/shiny/pull/2047)
+
+* Fixed [#1935](https://github.com/rstudio/shiny/issues/1935): correctly returns plot coordinates when using outer margins. ([#2108](https://github.com/rstudio/shiny/pull/2108))
+
+* Resolved [#2019](https://github.com/rstudio/shiny/issues/2019): `updateSliderInput` now changes the slider formatting if the input type changes. ([#2099](https://github.com/rstudio/shiny/pull/2099))
+
+* Fixed [#2138](https://github.com/rstudio/shiny/issues/2138): Inputs that are part of a `renderUI` were no longer restoring correctly from bookmarked state. [#2139](https://github.com/rstudio/shiny/pull/2139)
+
+* Fixed [#2093](https://github.com/rstudio/shiny/issues/2093): Make sure bookmark scope directory does not exist before trying to create it. [#2168](https://github.com/rstudio/shiny/pull/2168)
+
+* Fixed [#2177](https://github.com/rstudio/shiny/issues/2177): The session name is now being recorded when exiting a context.  Multiple sessions can now view their respective reactlogs. [#2180](https://github.com/rstudio/shiny/pull/2180)
+
+* Fixed [#2162](https://github.com/rstudio/shiny/issues/2162): `selectInput` was sending spurious duplicate values to the server when using backspace. Thanks, @sada1993! [#2187](https://github.com/rstudio/shiny/pull/2187)
+
+* Fixed [#2142](https://github.com/rstudio/shiny/issues/2142): Dropping files on `fileInput`s stopped working on recent releases of Firefox. Thanks @dmenne for reporting! [#2203](https://github.com/rstudio/shiny/pull/2203)
+
+* Fixed [#2204](https://github.com/rstudio/shiny/issues/2204): `updateDateInput` could set the wrong date on days where DST begins. [#2211](https://github.com/rstudio/shiny/pull/2211)
+
+### Documentation Updates
+
+* Addressed [#1864](https://github.com/rstudio/shiny/issues/1864) by changing `optgroup` documentation to use `list` instead of `c`. ([#2084](https://github.com/rstudio/shiny/pull/2084))
+
+
+shiny 1.1.0
+===========
+
+This is a significant release for Shiny, with a major new feature that was nearly a year in the making: support for asynchronous operations! Until now, R's single-threaded nature meant that performing long-running calculations or tasks from Shiny would bring your app to a halt for other users of that process. This release of Shiny deeply integrates the [promises](https://rstudio.github.io/promises/) package to allow you to execute some tasks asynchronously, including as part of reactive expressions and outputs. See the [promises](https://rstudio.github.io/promises/) documentation to learn more.
+
+## Full changelog
+
+### Breaking changes
+
+* `extractStackTrace` and `formatStackTrace` are deprecated and will be removed in a future version of Shiny. As far as we can tell, nobody has been using these functions, and a refactor has made them vestigial; if you need this functionality, please file an issue.
+
+### New features
+
+* Support for asynchronous operations! Built-in render functions that expected a certain kind of object to be yielded from their `expr`, now generally can handle a promise for that kind of object. Reactive expressions and observers are now promise-aware as well. ([#1932](https://github.com/rstudio/shiny/pull/1932))
+
+* Introduced two changes to the (undocumented but widely used) JavaScript function `Shiny.onInputChange(name, value)`. First, we changed the function name to `Shiny.setInputValue` (but don't worry--the old function name will continue to work). Second, until now, all calls to `Shiny.onInputChange(inputId, value)` have been "deduplicated"; that is, anytime an input is set to the same value it already has, the set is ignored. With Shiny v1.1, you can now add an options object as the third parameter: `Shiny.setInputValue("name", value, {priority: "event"})`. When the priority option is set to `"event"`, Shiny will always send the value and trigger reactivity, whether it is a duplicate or not. This closes [#928](https://github.com/rstudio/shiny/issues/928), which was the most upvoted open issue by far! Thanks, @daattali. ([#2018](https://github.com/rstudio/shiny/pull/2018))
+
+### Minor new features and improvements
+
+* Addressed [#1978](https://github.com/rstudio/shiny/issues/1978): `shiny:value` is now triggered when duplicate output data is received from the server. (Thanks, @andrewsali! [#1999](https://github.com/rstudio/shiny/pull/1999))
+
+* If a shiny output contains a css class of `shiny-report-size`, its container height and width are now reported in `session$clientData`. So, for an output with an id with `"myID"`, the height/width can be accessed via `session$clientData[['output_myID_height']]`/`session$clientData[['output_myID_width']]`. Addresses [#1980](https://github.com/rstudio/shiny/issues/1980). (Thanks, @cpsievert! [#1981](https://github.com/rstudio/shiny/pull/1981))
+
+* Added a new `autoclose = TRUE` parameter to `dateInput()` and `dateRangeInput()`. This closed [#1969](https://github.com/rstudio/shiny/issues/1969) which was a duplicate of much older issue, [#173](https://github.com/rstudio/shiny/issues/173). The default value is `TRUE` since that seems to be the common use case. However, this will cause existing apps with date inputs (that update to this version of Shiny) to have the datepicker be immediately closed once a date is selected. For most apps, this is actually desired behavior; if you wish to keep the datepicker open until the user clicks out of it use `autoclose = FALSE`. ([#1987](https://github.com/rstudio/shiny/pull/1987))
+
+* The version of Shiny is now accessible from Javascript, with `Shiny.version`. There is also a new function for comparing version strings, `Shiny.compareVersion()`. ([#1826](https://github.com/rstudio/shiny/pull/1826), [#1830](https://github.com/rstudio/shiny/pull/1830))
+
+* Addressed [#1851](https://github.com/rstudio/shiny/issues/1851): Stack traces are now smaller in some places `do.call()` is used. ([#1856](https://github.com/rstudio/shiny/pull/1856))
+
+* Stack traces have been improved, with more aggressive de-noising and support for deep stack traces (stitching together multiple stack traces that are conceptually part of the same async operation).
+
+* Addressed [#1859](https://github.com/rstudio/shiny/issues/1859): Server-side selectize is now significantly faster. (Thanks to @dselivanov [#1861](https://github.com/rstudio/shiny/pull/1861))
+
+* [#1989](https://github.com/rstudio/shiny/issues/1989): The server side of outputs can now be removed (e.g. `output$plot <- NULL`). This is not usually necessary but it does allow some objects to be garbage collected, which might matter if you are dynamically creating and destroying many outputs. (Thanks, @mmuurr! [#2011](https://github.com/rstudio/shiny/pull/2011))
+
+* Removed the (ridiculously outdated) "experimental feature" tag from the reference documentation for `renderUI`. ([#2036](https://github.com/rstudio/shiny/pull/2036))
+
+* Addressed [#1907](https://github.com/rstudio/shiny/issues/1907): the `ignoreInit` argument was first added only to `observeEvent`. Later, we also added it to `eventReactive`, but forgot to update the documentation. Now done, thanks [@flo12392](https://github.com/flo12392)! ([#2036](https://github.com/rstudio/shiny/pull/2036))
+
+### Bug fixes
+
+* Fixed [#1006](https://github.com/rstudio/shiny/issues/1006): Slider inputs sometimes showed too many digits. ([#1956](https://github.com/rstudio/shiny/pull/1956))
+
+* Fixed [#1958](https://github.com/rstudio/shiny/issues/1958): Slider inputs previously displayed commas after a decimal point. ([#1960](https://github.com/rstudio/shiny/pull/1960))
+
+* The internal `URLdecode()` function previously was a copy of `httpuv::decodeURIComponent()`, assigned at build time; now it invokes the httpuv function at run time.
+
+* Fixed [#1840](https://github.com/rstudio/shiny/issues/1840): with the release of Shiny 1.0.5, we accidently changed the relative positioning of the icon and the title text in `navbarMenu`s and `tabPanel`s. This fix reverts this behavior back (i.e. the icon should be to the left of the text and/or the downward arrow in case of `navbarMenu`s). ([#1848](https://github.com/rstudio/shiny/pull/1848))
+
+* Fixed [#1600](https://github.com/rstudio/shiny/issues/1600): URL-encoded bookmarking did not work with sliders that had dates or date-times. ([#1961](https://github.com/rstudio/shiny/pull/1961))
+
+* Fixed [#1962](https://github.com/rstudio/shiny/issues/1962): [File dragging and dropping](https://blog.rstudio.com/2017/08/15/shiny-1-0-4/) broke in the presence of jQuery version 3.0 as introduced by the [rhandsontable](https://jrowen.github.io/rhandsontable/) [htmlwidget](https://www.htmlwidgets.org/). ([#2005](https://github.com/rstudio/shiny/pull/2005))
+
+* Improved the error handling inside the `addResourcePath()` function, to give end users more informative error messages when the `directoryPath` argument cannot be normalized. This is especially useful for `runtime: shiny_prerendered` Rmd documents, like `learnr` tutorials. ([#1968](https://github.com/rstudio/shiny/pull/1968))
+
+* Changed script tags in reactlog ([inst/www/reactive-graph.html](https://github.com/rstudio/shiny/blob/master/inst/www/reactive-graph.html)) from HTTP to HTTPS in order to avoid mixed content blocking by most browsers. (Thanks, @jekriske-lilly! [#1844](https://github.com/rstudio/shiny/pull/1844))
+
+* Addressed [#1784](https://github.com/rstudio/shiny/issues/1784): `runApp()` will avoid port 6697, which is considered unsafe by Chrome.
+
+* Fixed [#2000](https://github.com/rstudio/shiny/issues/2000): Implicit calls to `xxxOutput` not working inside modules. (Thanks, @GregorDeCillia! [#2010](https://github.com/rstudio/shiny/pull/2010))
+
+* Fixed [#2021](https://github.com/rstudio/shiny/issues/2021): Memory leak with `reactiveTimer` and `invalidateLater`. ([#2022](https://github.com/rstudio/shiny/pull/2022))
+
+### Library updates
+
+* Updated to ion.rangeSlider 2.2.0. ([#1955](https://github.com/rstudio/shiny/pull/1955))
+
+
+## Known issues
+
+In some rare cases, interrupting an application (by pressing Ctrl-C or Esc) may result in the message `Error in execCallbacks(timeoutSecs) : c++ exception (unknown reason)`. Although this message sounds alarming, it is harmless, and will go away in a future version of the later package (more information [here](https://github.com/r-lib/later/issues/55)).
+
+
+shiny 1.0.5
+===========
+
+## Full changelog
+
+### Bug fixes
+
+* Fixed [#1818](https://github.com/rstudio/shiny/issues/1818): `conditionalPanel()` expressions that have a newline character in them caused the application to not work. ([#1820](https://github.com/rstudio/shiny/pull/1820))
+
+* Added a safe wrapper function for internal calls to `jsonlite::fromJSON()`. ([#1822](https://github.com/rstudio/shiny/pull/1822))
+
+* Fixed [#1824](https://github.com/rstudio/shiny/issues/1824): HTTP HEAD requests on static files caused the application to stop. ([#1825](https://github.com/rstudio/shiny/pull/1825))
+
+
+shiny 1.0.4
+===========
+
+There are three headlining features in this release of Shiny. It is now possible to add and remove tabs from a `tabPanel`; there is a new function, `onStop()`, which registers callbacks that execute when an application exits; and `fileInput`s now can have files dragged and dropped on them. In addition to these features, this release has a number of minor features and bug fixes. See the full changelog below for more details.
+
+## Full changelog
+
+### New features
+
+* Implemented [#1668](https://github.com/rstudio/shiny/issues/1668): dynamic tabs: added functions (`insertTab`, `appendTab`, `prependTab`, `removeTab`, `showTab` and `hideTab`) that allow you to do those actions for an existing `tabsetPanel`. ([#1794](https://github.com/rstudio/shiny/pull/1794))
+
+* Implemented [#1213](https://github.com/rstudio/shiny/issues/1213): Added a new function, `onStop()`, which can be used to register callback functions that are invoked when an application exits, or when a user session ends. (Multiple sessions can be connected to a single running Shiny application.) This is useful if you have finalization/clean-up code that should be run after the application exits. ([#1770](https://github.com/rstudio/shiny/pull/1770)
+
+* Implemented [#1155](https://github.com/rstudio/shiny/issues/1155): Files can now be drag-and-dropped on `fileInput` controls. The appearance of `fileInput` controls while files are being dragged can be modified by overriding the `shiny-file-input-active` and `shiny-file-input-over` classes. ([#1782](https://github.com/rstudio/shiny/pull/1782))
+
+### Minor new features and improvements
+
+* Addressed [#1688](https://github.com/rstudio/shiny/issues/1688): trigger a new `shiny:outputinvalidated` event when an output gets invalidated, at the same time that the `recalculating` CSS class is added. ([#1758](https://github.com/rstudio/shiny/pull/1758), thanks [@andrewsali](https://github.com/andrewsali)!)
+
+* Addressed [#1508](https://github.com/rstudio/shiny/issues/1508): `fileInput` now permits the same file to be uploaded multiple times. ([#1719](https://github.com/rstudio/shiny/pull/1719))
+
+* Addressed [#1501](https://github.com/rstudio/shiny/issues/1501): The `fileInput` control now retains uploaded file extensions on the server. This fixes [readxl](https://github.com/tidyverse/readxl)'s `readxl::read_excel` and other functions that must recognize a file's extension in order to work. ([#1706](https://github.com/rstudio/shiny/pull/1706))
+
+* For `conditionalPanel`s, Shiny now gives more informative messages if there are errors evaluating or parsing the JavaScript conditional expression. ([#1727](https://github.com/rstudio/shiny/pull/1727))
+
+* Addressed [#1586](https://github.com/rstudio/shiny/issues/1586): The `conditionalPanel` function now accepts an `ns` argument. The `ns` argument can be used in a [module](https://shiny.rstudio.com/articles/modules.html) UI function to scope the `condition` expression to the module's own input and output IDs. ([#1735](https://github.com/rstudio/shiny/pull/1735))
+
+* With `options(shiny.testmode=TRUE)`, the Shiny process will send a message to the client in response to a changed input, even if no outputs have changed. This helps to streamline testing using the shinytest package. ([#1747](https://github.com/rstudio/shiny/pull/1747))
+
+* Addressed [#1738](https://github.com/rstudio/shiny/issues/1738): The `updateTextInput` and `updateTextAreaInput` functions can now update the placeholder. ([#1742](https://github.com/rstudio/shiny/pull/1742))
+
+* Converted examples to single file apps, and made updates and enhancements to comments in the example app scripts. ([#1685](https://github.com/rstudio/shiny/pull/1685))
+
+* Added new `snapshotPreprocessInput()` and `snapshotPreprocessOutput()` functions, which is used for preprocessing and input and output values before taking a test snapshot. ([#1760](https://github.com/rstudio/shiny/pull/1760), [#1789](https://github.com/rstudio/shiny/pull/1789))
+
+* The HTML generated by `renderTable()` no longer includes comments with the R version, xtable version, and timestamp. ([#1771](https://github.com/rstudio/shiny/pull/1771))
+
+* Added a function `isRunning` to test whether a Shiny app is currently running. ([#1785](https://github.com/rstudio/shiny/pull/1785))
+
+* Added a function `setSerializer`, which allows authors to specify a function for serializing the value of a custom input. ([#1791](https://github.com/rstudio/shiny/pull/1791))
+
+### Bug fixes
+
+* Fixed [#1546](https://github.com/rstudio/shiny/issues/1546): make it possible (without any hacks) to write arbitrary data into a module's `session$userData` (which is exactly the same environment as the parent's `session$userData`). To be clear, it allows something like `session$userData$x <- TRUE`, but not something like `session$userData <- TRUE` (that is not allowed in any context, whether you're in the main app, or in a module) ([#1732](https://github.com/rstudio/shiny/pull/1732)).
+
+* Fixed [#1701](https://github.com/rstudio/shiny/issues/1701): There was a partial argument match in the `generateOptions` function. ([#1702](https://github.com/rstudio/shiny/pull/1702))
+
+* Fixed [#1710](https://github.com/rstudio/shiny/issues/1710): `ReactiveVal` objects did not have separate dependents. ([#1712](https://github.com/rstudio/shiny/pull/1712))
+
+* Fixed [#1438](https://github.com/rstudio/shiny/issues/1438): `unbindAll()` should not be called when inserting content with `insertUI()`. A previous fix ([#1449](https://github.com/rstudio/shiny/pull/1449)) did not work correctly. ([#1736](https://github.com/rstudio/shiny/pull/1736))
+
+* Fixed [#1755](https://github.com/rstudio/shiny/issues/1755): dynamic htmlwidgets sent the path of the package on the server to the client. ([#1756](https://github.com/rstudio/shiny/pull/1756))
+
+* Fixed [#1763](https://github.com/rstudio/shiny/issues/1763): Shiny's private random stream leaked out into the main random stream. ([#1768](https://github.com/rstudio/shiny/pull/1768))
+
+* Fixed [#1680](https://github.com/rstudio/shiny/issues/1680): `options(warn=2)` was not respected when running an app. ([#1790](https://github.com/rstudio/shiny/pull/1790))
+
+* Fixed [#1772](https://github.com/rstudio/shiny/issues/1772): ensure that `runApp()` respects the `shinyApp(onStart = function())` argument. ([#1770](https://github.com/rstudio/shiny/pull/1770))
+
+* Fixed [#1474](https://github.com/rstudio/shiny/issues/1474): A `browser()` call in an observer could cause an error in the RStudio IDE on Windows. ([#1802](https://github.com/rstudio/shiny/pull/1802))
+
+
+shiny 1.0.3
+================
+
+This is a hotfix release of Shiny. With previous versions of Shiny, when running an application on the newly-released version of R, 3.4.0, it would print a message: `Warning in body(fun) : argument is not a function`. This has no effect on the application, but because the message could be alarming to users, we are releasing a new version of Shiny that fixes this issue.
+
+## Full changelog
+
+### Bug fixes
+
+* Fixed [#1672](https://github.com/rstudio/shiny/issues/1672): When an error occurred while uploading a file, the progress bar did not change colors. ([#1673](https://github.com/rstudio/shiny/pull/1673))
+
+* Fixed [#1676](https://github.com/rstudio/shiny/issues/1676): On R 3.4.0, running a Shiny application gave a warning: `Warning in body(fun) : argument is not a function`. ([#1677](https://github.com/rstudio/shiny/pull/1677))
+
+
+shiny 1.0.2
+================
+
+This is a hotfix release of Shiny. The primary reason for this release is because the web host for MathJax JavaScript library is scheduled to be shut down in the next few weeks. After it is shut down, Shiny applications that use MathJax will no longer be able to load the MathJax library if they are run with Shiny 1.0.1 and below. (If you don't know whether your application uses MathJax, it probably does not.) For more information about why the MathJax CDN is shutting down, see https://www.mathjax.org/cdn-shutting-down/.
+
+## Full changelog
+
+### Minor new features and improvements
+
+* Added a `shiny:sessioninitialized` Javascript event, which is fired at the end of the initialize method of the Session object. This allows us to listen for this event when we want to get the value of things like `Shiny.user`. ([#1568](https://github.com/rstudio/shiny/pull/1568))
+
+* Fixed [#1649](https://github.com/rstudio/shiny/issues/1649): allow the `choices` argument in `checkboxGroupInput()` to be `NULL` (or `c()`) to keep backward compatibility with Shiny < 1.0.1. This will result in the same thing as providing `choices = character(0)`. ([#1652](https://github.com/rstudio/shiny/pull/1652))
+
+* The official URL for accessing MathJax libraries over CDN has been deprecated and will be removed soon. We have switched to a new rstudio.com URL that we will support going forward. ([#1664](https://github.com/rstudio/shiny/pull/1664))
+
+### Bug fixes
+
+* Fixed [#1653](https://github.com/rstudio/shiny/issues/1653): wrong code example in documentation. ([#1658](https://github.com/rstudio/shiny/pull/1658))
+
+
+shiny 1.0.1
+================
+
+This is a maintenance release of Shiny, mostly aimed at fixing bugs and introducing minor features. The most notable additions in this version of Shiny are the introduction of the `reactiveVal()` function (it's like `reactiveValues()`, but it only stores a single value), and that the choices of `radioButtons()` and `checkboxGroupInput()` can now contain HTML content instead of just plain text.
+
+## Full changelog
+
+### Breaking changes
+
+* The functions `radioButtons()`, `checkboxGroupInput()` and `selectInput()` (and the corresponding `updateXXX()` functions) no longer accept a `selected` argument whose value is the name of a choice, instead of the value of the choice. This feature had been deprecated since Shiny 0.10 (it printed a warning message, but still tried to match the name to the right choice) and it's now completely unsupported.
+
+### New features
+
+* Added `reactiveVal` function, for storing a single value which can be (reactively) read and written. Similar to `reactiveValues`, except that `reactiveVal` just lets you store a single value instead of storing multiple values by name. ([#1614](https://github.com/rstudio/shiny/pull/1614))
+
+### Minor new features and improvements
+
+* Fixed [#1637](https://github.com/rstudio/shiny/issues/1637): Outputs stay faded on MS Edge. ([#1640](https://github.com/rstudio/shiny/pull/1640))
+
+* Addressed [#1348](https://github.com/rstudio/shiny/issues/1348) and [#1437](https://github.com/rstudio/shiny/issues/1437) by adding two new arguments to `radioButtons()` and `checkboxGroupInput()`: `choiceNames` (list or vector) and `choiceValues` (list or vector). These can be passed in as an alternative to `choices`, with the added benefit that the elements in `choiceNames` can be arbitrary UI (i.e. anything created by `HTML()` and the `tags()` functions, like icons and images). While the underlying values for each choice (passed in through `choiceValues`) must still be simple text, their visual representation on the app (what the user actually clicks to select a different option) can be any valid HTML element. See `?radioButtons` for a small example. ([#1521](https://github.com/rstudio/shiny/pull/1521))
+
+* Updated `tools/README.md` with more detailed instructions. ([#1616](https://github.com/rstudio/shiny/pull/1616))
+
+* Fixed [#1565](https://github.com/rstudio/shiny/issues/1565), which meant that resources with spaces in their names return HTTP 404. ([#1566](https://github.com/rstudio/shiny/pull/1566))
+
+* Exported `session$user` (if it exists) to the client-side; it's accessible in the Shiny object: `Shiny.user`. ([#1563](https://github.com/rstudio/shiny/pull/1563))
+
+* Added support for HTML5's `pushState` which allows for pseudo-navigation
+in shiny apps. For more info, see the documentation (`?updateQueryString` and `?getQueryString`). ([#1447](https://github.com/rstudio/shiny/pull/1447))
+
+* Fixed [#1121](https://github.com/rstudio/shiny/issues/1121): plot interactions with ggplot2 now support `coord_fixed()`. ([#1525](https://github.com/rstudio/shiny/pull/1525))
+
+* Added `snapshotExclude` function, which marks an output so that it is not recorded in a test snapshot. ([#1559](https://github.com/rstudio/shiny/pull/1559))
+
+* Added `shiny:filedownload` JavaScript event, which is triggered when a `downloadButton` or `downloadLink` is clicked. Also, the values of `downloadHandler`s are not recorded in test snapshots, because the values change every time the application is run. ([#1559](https://github.com/rstudio/shiny/pull/1559))
+
+* Added support for plot interactions with ggplot2 > 2.2.1. ([#1578](https://github.com/rstudio/shiny/pull/1578))
+
+* Fixed [#1577](https://github.com/rstudio/shiny/issues/1577): Improved `escapeHTML` (util.js) in terms of the order dependency of replacing, XSS risk attack and performance. ([#1579](https://github.com/rstudio/shiny/pull/1579))
+
+* The `shiny:inputchanged` JavaScript event now includes two new fields, `binding` and `el`, which contain the input binding and DOM element, respectively. Additionally, `Shiny.onInputChange()` now accepts an optional argument, `opts`, which can contain the same fields. ([#1596](https://github.com/rstudio/shiny/pull/1596))
+
+* The `NS()` function now returns a vectorized function. ([#1613](https://github.com/rstudio/shiny/pull/1613))
+
+* Fixed [#1617](https://github.com/rstudio/shiny/issues/1617): `fileInput` can have customized text for the button and the placeholder. ([#1619](https://github.com/rstudio/shiny/pull/1619))
+
+### Bug fixes
+
+* Fixed [#1511](https://github.com/rstudio/shiny/issues/1511): `fileInput`s did not trigger the `shiny:inputchanged` event on the client. Also removed `shiny:fileuploaded` JavaScript event, because it is no longer needed after this fix. ([#1541](https://github.com/rstudio/shiny/pull/1541), [#1570](https://github.com/rstudio/shiny/pull/1570))
+
+* Fixed [#1472](https://github.com/rstudio/shiny/issues/1472): With a Progress object, calling `set(value=NULL)` made the progress bar go to 100%. Now it does not change the value of the progress bar. The documentation also incorrectly said that setting the `value` to `NULL` would hide the progress bar. ([#1547](https://github.com/rstudio/shiny/pull/1547))
+
+* Fixed [#162](https://github.com/rstudio/shiny/issues/162): When a dynamically-generated input changed to a different `inputType`, it might be incorrectly deduplicated.  ([#1594](https://github.com/rstudio/shiny/pull/1594))
+
+* Removed redundant call to `inputs.setInput`. ([#1595](https://github.com/rstudio/shiny/pull/1595))
+
+* Fixed bug where `dateRangeInput` did not respect `weekstart` argument. ([#1592](https://github.com/rstudio/shiny/pull/1592))
+
+* Fixed [#1598](https://github.com/rstudio/shiny/issues/1598): `setBookmarkExclude()` did not work properly inside of modules. ([#1599](https://github.com/rstudio/shiny/pull/1599))
+
+* Fixed [#1605](https://github.com/rstudio/shiny/issues/1605): sliders did not move when clicked on the bar area. ([#1610](https://github.com/rstudio/shiny/pull/1610))
+
+* Fixed [#1621](https://github.com/rstudio/shiny/issues/1621): if a `reactiveTimer`'s session was closed before the first time that the `reactiveTimer` fired, then the `reactiveTimer` would not get cleared and would keep firing indefinitely. ([#1623](https://github.com/rstudio/shiny/pull/1623))
+
+* Fixed [#1634](https://github.com/rstudio/shiny/issues/1634): If brushing on a plot causes the plot to redraw, then the redraw could in turn trigger the plot to redraw again and again. This was due to spurious changes in values of floating point numbers. ([#1641](https://github.com/rstudio/shiny/pull/1641))
+
+### Library updates
+
+* Closed [#1500](https://github.com/rstudio/shiny/issues/1500): Updated ion.rangeSlider to 2.1.6. ([#1540](https://github.com/rstudio/shiny/pull/1540))
+
+
+shiny 1.0.0
+===========
+
+Shiny has reached a milestone: version 1.0.0! In the last year, we've added two major features that we considered essential for a 1.0.0 release: bookmarking, and support for testing Shiny applications. As usual, this version of Shiny also includes many minor features and bug fixes.
+
+Here are some highlights from this release. For more details, see the full changelog below.
+
+## Support for testing Shiny applications
+
+Shiny now supports automated testing of applications, with the [shinytest](https://github.com/rstudio/shinytest) package. Shinytest has not yet been released on CRAN, but will be soon. ([#18](https://github.com/rstudio/shiny/issues/18), [#1464](https://github.com/rstudio/shiny/pull/1464))
+
+## Debounce/throttle reactives
+
+Now there's an official way to slow down reactive values and expressions that invalidate too quickly. Pass a reactive expression to the new `debounce` or `throttle` function, and get back a modified reactive expression that doesn't invalidate as often. ([#1510](https://github.com/rstudio/shiny/pull/1510))
+
+## Full changelog
+
+### Breaking changes
+
+* Added a new `placeholder` argument to `verbatimTextOutput()`. The default is `FALSE`, which means that, if there is no content for this output, no representation of this slot will be made in the UI. Previsouly, even if there was no content, you'd see an empty rectangle in the UI that served as a placeholder. You can set `placeholder = TRUE` to revert back to that look. ([#1480](https://github.com/rstudio/shiny/pull/1480))
+
+### New features
+
+* Added support for testing Shiny applications with the shinytest package. ([#18](https://github.com/rstudio/shiny/issues/18), [#1464](https://github.com/rstudio/shiny/pull/1464))
+
+* Added `debounce` and `throttle` functions, to control the rate at which reactive values and expressions invalidate. ([#1510](https://github.com/rstudio/shiny/pull/1510))
+
+### Minor new features and improvements
+
+* Addressed [#1486](https://github.com/rstudio/shiny/issues/1486) by adding a new argument to `observeEvent` and `eventReactive`, called `ignoreInit` (defaults to `FALSE` for backwards compatibility). When set to `TRUE`, the action (i.e. the second argument: `handlerExpr` and `valueExpr`, respectively) will not be triggered when the observer/reactive is first created/initialized. In other words, `ignoreInit = TRUE` ensures that the `observeEvent` (or `eventReactive`) is *never* run right away. For more info, see the documentation (`?observeEvent`). ([#1494](https://github.com/rstudio/shiny/pull/1494))
+
+* Added a new argument to `observeEvent` called `once`. When set to `TRUE`, it results in the observer being destroyed (stop observing) after the first time that `handlerExpr` is run (i.e. `once = TRUE` guarantees that the observer only runs, at most, once). For more info, see the documentation (`?observeEvent`). ([#1494](https://github.com/rstudio/shiny/pull/1494))
+
+* Addressed [#1358](https://github.com/rstudio/shiny/issues/1358): more informative error message when calling `runApp()` inside of an app's app.R (or inside ui.R or server.R). ([#1482](https://github.com/rstudio/shiny/pull/1482))
+
+* Added a more descriptive JS warning for `insertUI()` when the selector argument does not match anything in DOM. ([#1488](https://github.com/rstudio/shiny/pull/1488))
+
+* Added support for injecting JavaScript code when the `shiny.testmode` option is set to `TRUE`. This makes it possible to record test events interactively. ([#1464](https://github.com/rstudio/shiny/pull/1464))
+
+* Added ability through arguments to the `a` tag function called inside `downloadButton()` and `downloadLink()`. Closes [#986](https://github.com/rstudio/shiny/issues/986). ([#1492](https://github.com/rstudio/shiny/pulls/1492))
+
+* Implemented [#1512](https://github.com/rstudio/shiny/issues/1512): added a `userData` environment to `session`, for storing arbitrary session-related variables. Generally, session-scoped variables are created just by declaring normal variables that are local to the Shiny server function, but `session$userData` may be more convenient for some advanced scenarios. ([#1513](https://github.com/rstudio/shiny/pull/1513))
+
+* Relaxed naming requirements for `addResourcePath()` (the first character no longer needs to be a letter). ([#1529](https://github.com/rstudio/shiny/pull/1529))
+
+### Bug fixes
+
+* Fixed [#969](https://github.com/rstudio/shiny/issues/969): allow navbarPage's `fluid` param to control both containers. ([#1481](https://github.com/rstudio/shiny/pull/1481))
+
+* Fixed [#1438](https://github.com/rstudio/shiny/issues/1438): `unbindAll()` should not be called when inserting content with `insertUI()` ([#1449](https://github.com/rstudio/shiny/pull/1449))
+
+* Fixed bug causing `<meta>` tags associated with HTML dependencies of Shiny R Markdown files to be rendered incorrectly. ([#1463](https://github.com/rstudio/shiny/pull/1463))
+
+* Fixed [#1359](https://github.com/rstudio/shiny/issues/1359): `shinyApp()` options argument ignored when passed to `runApp()`. ([#1483](https://github.com/rstudio/shiny/pull/1483))
+
+* Fixed [#117](https://github.com/rstudio/shiny/issues/117): Reactive expressions now release references to cached values as soon as they are invalidated, potentially making those cached values eligible for garbage collection sooner. Previously, this would not occur until the next cached value was calculated and stored. ([#1504](https://github.com/rstudio/shiny/pull/1504/files))
+
+* Fixed [#1013](https://github.com/rstudio/shiny/issues/1013): `flushReact` should be called after app loads. Observers set up outside of server functions were not running until after the first user connects. ([#1503](https://github.com/rstudio/shiny/pull/1503))
+
+* Fixed [#1453](https://github.com/rstudio/shiny/issues/1453): When using a modal dialog with `easyClose=TRUE` in a Shiny gadget, pressing Esc would close both the modal and the gadget. Now pressing Esc only closes the modal. ([#1523](https://github.com/rstudio/shiny/pull/1523))
+
+### Library updates
+
+* Updated to Font Awesome 4.7.0.
+
+
+shiny 0.14.2
+============
+
+This is a maintenance release of Shiny, with some bug fixes and minor new features.
+
+## Full changelog
+
+### Minor new features and improvements
+
+* Added a `fade` argument to `modalDialog()` -- setting it to `FALSE` will remove the usual fade-in animation for that modal window. ([#1414](https://github.com/rstudio/shiny/pull/1414))
+
+* Fixed a "duplicate binding" error that occurred in some edge cases involving `insertUI` and nested `uiOutput`. ([#1402](https://github.com/rstudio/shiny/pull/1402))
+
+* Fixed [#1422](https://github.com/rstudio/shiny/issues/1422): When using the `shiny.trace` option, allow specifying to only log SEND or RECV messages, or both. (PR [#1428](https://github.com/rstudio/shiny/pull/1428))
+
+* Fixed [#1419](https://github.com/rstudio/shiny/issues/1419): Allow overriding a JS custom message handler. (PR [#1445](https://github.com/rstudio/shiny/pull/1445))
+
+* Added `exportTestValues()` function, which allows a test driver to query the session for values internal to an application's server function. This only has an effect if the `shiny.testmode` option is set to `TRUE`. ([#1436](https://github.com/rstudio/shiny/pull/1436))
+
+### Bug fixes
+
+* Fixed [#1427](https://github.com/rstudio/shiny/issues/1427): make sure that modals do not close incorrectly when an element inside them is triggered as hidden. ([#1430](https://github.com/rstudio/shiny/pull/1430))
+
+* Fixed [#1404](https://github.com/rstudio/shiny/issues/1404): stack trace tests were not compatible with the byte-code compiler in R-devel, which now tracks source references.
+
+* `sliderInputBinding.setValue()` now sends a slider's value immediately, instead of waiting for the usual 250ms debounce delay. ([#1429](https://github.com/rstudio/shiny/pull/1429))
+
+* Fixed a bug where, in versions of R before 3.2, Shiny applications could crash due to a bug in R's implementation of `list2env()`. ([#1446](https://github.com/rstudio/shiny/pull/1446))
+
+shiny 0.14.1
+============
+
+This is a maintenance release of Shiny, with some bug fixes and minor new features.
+
+## Full changelog
+
+### Minor new features and improvements
+
+* Restored file inputs are now copied on restore, so that the restored application can't modify the bookmarked file. ([#1370](https://github.com/rstudio/shiny/issues/1370))
+
+* Added support for plot interaction in the development version of ggplot2, 2.1.0.9000. Also added support for ggplot2 plots with `coord_flip()` (in the development version of ggplot2). ([hadley/ggplot2#1781](https://github.com/hadley/ggplot2/issues/1781), [#1392](https://github.com/rstudio/shiny/pull/1392))
+
+
+### Bug fixes
+
+* Fixed [#1093](https://github.com/rstudio/shiny/issues/1093) better: `updateRadioButtons()` and `updateCheckboxGroupInput()` were not working correctly if the choices were given as a numeric vector. This had been solved in [#1291](https://github.com/rstudio/shiny/pull/1291), but that introduced a different bug [#1396](https://github.com/rstudio/shiny/issues/1396) that this better fix avoids. ([#1370](https://github.com/rstudio/shiny/pull/1397))
+
+* Fixed [#1368](https://github.com/rstudio/shiny/issues/1368): If an app with a file input was bookmarked and restored, and then the restored app was bookmarked and restored (without uploading a new file), then it would fail to restore the file the second time. ([#1370](https://github.com/rstudio/shiny/pull/1370))
+
+* Fixed [#1369](https://github.com/rstudio/shiny/issues/1369): `sliderInput()` did not allow showing numbers without a thousands separator.
+
+* Fixed [#1346](https://github.com/rstudio/shiny/issues/1346) and [#1107](https://github.com/rstudio/shiny/issues/1107) : jQuery UI's datepicker conflicted with the bootstrap-datepicker used by Shiny's `dateInput()` and `dateRangeInput()`. ([#1374](https://github.com/rstudio/shiny/pull/1374))
+
+### Library updates
+
+* Updated to bootstrap-datepicker 1.6.4. ([#1218](https://github.com/rstudio/shiny/issues/1218), [#1374](https://github.com/rstudio/shiny/pull/1374))
+
+* Updated to jQuery UI 1.12.1. Previously, Shiny included a build of 1.11.4 which was missing the datepicker component due to a conflict with the bootstrap-datepicker used by Shiny's `dateInput()` and `dateRangeInput()`. ([#1374](https://github.com/rstudio/shiny/pull/1374))
+
+
 shiny 0.14
-=================
+==========
 
 A new Shiny release is upon us! There are many new exciting features, bug fixes, and library updates. We'll just highlight the most important changes here, but you can browse through the full changelog below for details. This will likely be the last release before shiny 1.0, so get out your party hats!
 
@@ -10,17 +446,17 @@ Shiny now supports bookmarkable state: users can save the state of an applicatio
 **_Important note_:**
 > Saved-to-server bookmarking currently works with Shiny Server Open Source. Support on Shiny Server Pro, RStudio Connect, and shinyapps.io is under development and testing. However, URL-encoded bookmarking works on all hosting platforms.
 
-See [this article](http://shiny.rstudio-staging.com/articles/bookmarking-state.html) to get started with bookmarkable state. There is also an [advanced-level article](http://shiny.rstudio-staging.com/articles/advanced-bookmarking.html) (for apps that have a complex state), and [a modules article](http://shiny.rstudio-staging.com/articles/bookmarking-modules.html) that details how to use bookmarking in conjunction with modules.
+See [this article](http://shiny.rstudio.com/articles/bookmarking-state.html) to get started with bookmarkable state. There is also an [advanced-level article](http://shiny.rstudio.com/articles/advanced-bookmarking.html) (for apps that have a complex state), and [a modules article](http://shiny.rstudio.com/articles/bookmarking-modules.html) that details how to use bookmarking in conjunction with modules.
 
 ## Notifications
 
 Shiny can now display notifications on the client browser by using the `showNotification()` function. Use [this demo app](https://gallery.shinyapps.io/116-notifications/) to play around with the notification API. Here's a screenshot of a very simple notification (shown when the button is clicked):
 
 <p align="center">
-<img src="http://shiny.rstudio-staging.com/images/notification.png" alt="notification" width="50%"/>
+<img src="http://shiny.rstudio.com/images/notification.png" alt="notification" width="50%"/>
 </p>
 
-[Here](http://shiny.rstudio-staging.com/articles/notifications.html)'s our article about it, and the [reference documentation](http://shiny.rstudio-staging.com/reference/shiny/latest/showNotification.html).
+[Here](http://shiny.rstudio.com/articles/notifications.html)'s our article about it, and the [reference documentation](http://shiny.rstudio.com/reference/shiny/latest/showNotification.html).
 
 ## Progress indicators
 
@@ -29,7 +465,7 @@ If your Shiny app contains computations that take a long time to complete, a pro
 **_Important note_:**
 > If you were already using progress bars and had customized them with your own CSS, you can add the `style = "old"` argument to your `withProgress()` call (or `Progress$new()`). This will result in the same appearance as before. You can also call `shinyOptions(progress.style = "old")` in your app's server function to make all progress indicators use the old styling.
 
-To see new progress bars in action, see [this app](https://gallery.shinyapps.io/085-progress/) in the gallery. You can also learn more about this in [our article](http://shiny.rstudio-staging.com/articles/progress.html) and in the reference documentation (either for the easier [`withProgress` functional API](http://shiny.rstudio-staging.com/reference/shiny/latest/withProgress.html) or the more complicated, but more powerful, [`Progress` object-oriented API](http://shiny.rstudio-staging.com/reference/shiny/latest/Progress.html).
+To see new progress bars in action, see [this app](https://gallery.shinyapps.io/085-progress/) in the gallery. You can also learn more about this in [our article](http://shiny.rstudio.com/articles/progress.html) and in the reference documentation (either for the easier [`withProgress` functional API](http://shiny.rstudio.com/reference/shiny/latest/withProgress.html) or the more complicated, but more powerful, [`Progress` object-oriented API](http://shiny.rstudio.com/reference/shiny/latest/Progress.html).
 
 ## Reconnection
 
@@ -40,10 +476,10 @@ Shiny can now automatically reconnect to your Shiny session if you temporarily l
 Shiny has now built-in support for displaying modal dialogs like the one below ([live app here](https://gallery.shinyapps.io/114-modal-dialog/)):
 
 <p align="center">
-<img src="http://shiny.rstudio-staging.com/images/modal-dialog.png" alt="modal-dialog" width="50%"/>
+<img src="http://shiny.rstudio.com/images/modal-dialog.png" alt="modal-dialog" width="50%"/>
 </p>
 
-To learn more about this, read [our article](http://shiny.rstudio-staging.com/articles/modal-dialogs.html) and the [reference documentation](http://shiny.rstudio-staging.com/reference/shiny/latest/modalDialog.html).
+To learn more about this, read [our article](http://shiny.rstudio.com/articles/modal-dialogs.html) and the [reference documentation](http://shiny.rstudio.com/reference/shiny/latest/modalDialog.html).
 
 ## `insertUI` and `removeUI`
 
@@ -51,13 +487,13 @@ Sometimes in a Shiny app, arbitrary HTML UI may need to be created on-the-fly in
 
 See [this simple demo app](https://gallery.shinyapps.io/111-insert-ui/) of how one could use `insertUI` and `removeUI` to insert and remove text elements using a queue. Also see [this other app](https://gallery.shinyapps.io/insertUI/) that demonstrates how to insert and remove a few common Shiny input objects. Finally, [this app](https://gallery.shinyapps.io/insertUI-modules/) shows how to dynamically insert modules using `insertUI`.
 
-For more, read [our article](http://shiny.rstudio-staging.com/articles/dynamic-ui.html) about dynamic UI generation and the reference documentation about [`insertUI`](http://shiny.rstudio-staging.com/reference/shiny/latest/insertUI.html) and [`removeUI`](http://shiny.rstudio-staging.com/reference/shiny/latest/removeUI.html).
+For more, read [our article](http://shiny.rstudio.com/articles/dynamic-ui.html) about dynamic UI generation and the reference documentation about [`insertUI`](http://shiny.rstudio.com/reference/shiny/latest/insertUI.html) and [`removeUI`](http://shiny.rstudio.com/reference/shiny/latest/removeUI.html).
 
 ## Documentation for connecting to an external database
 
-Many Shiny users have asked about best practices for accessing external databases from their Shiny applications. Although database access has long been possible using various database connector packages in R, it can be challenging to use them robustly in the dynamic environment that Shiny provides. So far, it has been mostly up to application authors to find the appropriate database drivers and to discover how to manage the database connections within an application. In order to demystify this process, we wrote a series of articles ([first one here](http://shiny.rstudio-staging.com/articles/overview.html)) that covers the basics of connecting to an external database, as well as some security precautions to keep in mind (e.g. [how to avoid SQL injection attacks](http://shiny.rstudio-staging.com/articles/sql-injections.html)).
+Many Shiny users have asked about best practices for accessing external databases from their Shiny applications. Although database access has long been possible using various database connector packages in R, it can be challenging to use them robustly in the dynamic environment that Shiny provides. So far, it has been mostly up to application authors to find the appropriate database drivers and to discover how to manage the database connections within an application. In order to demystify this process, we wrote a series of articles ([first one here](http://shiny.rstudio.com/articles/overview.html)) that covers the basics of connecting to an external database, as well as some security precautions to keep in mind (e.g. [how to avoid SQL injection attacks](http://shiny.rstudio.com/articles/sql-injections.html)).
 
-There are a few packages that you should look at if you're using a relational database in a Shiny app: the `dplyr` and `DBI` packages (both featured in the article linked to above), and the brand new `pool` package, which provides a further layer of abstraction to make it easier and safer to use either `DBI` or `dplyr`. `pool` is not yet on CRAN. In particular, `pool` will take care of managing connections, preventing memory leaks, and ensuring the best performance. See this [`pool` basics article](http://shiny.rstudio-staging.com/articles/pool-basics.html) and the [more advanced-level article](http://shiny.rstudio-staging.com/articles/pool-advanced.html) if you're feeling adventurous! (Both of these articles contain Shiny app examples that use `DBI` to connect to an external MySQL database.) If you are more comfortable with `dplyr` than `DBI`, don't miss the article about the [integration of `pool` and `dplyr`](http://shiny.rstudio-staging.com/articles/pool-dplyr.html).
+There are a few packages that you should look at if you're using a relational database in a Shiny app: the `dplyr` and `DBI` packages (both featured in the article linked to above), and the brand new `pool` package, which provides a further layer of abstraction to make it easier and safer to use either `DBI` or `dplyr`. `pool` is not yet on CRAN. In particular, `pool` will take care of managing connections, preventing memory leaks, and ensuring the best performance. See this [`pool` basics article](http://shiny.rstudio.com/articles/pool-basics.html) and the [more advanced-level article](http://shiny.rstudio.com/articles/pool-advanced.html) if you're feeling adventurous! (Both of these articles contain Shiny app examples that use `DBI` to connect to an external MySQL database.) If you are more comfortable with `dplyr` than `DBI`, don't miss the article about the [integration of `pool` and `dplyr`](http://shiny.rstudio.com/articles/pool-dplyr.html).
 
 If you're new to databases in the Shiny world, we recommend using `dplyr` and `pool` if possible. If you need greater control than `dplyr` offers (for example, if you need to modify data in the database or use transactions), then use `DBI` and `pool`. The `pool` package was introduced to make your life easier, but in no way constrains you, so we don't envision any situation in which you'd be better off *not* using it. The only caveat is that `pool` is not yet on CRAN, so you may prefer to wait for that.
 
@@ -65,14 +501,14 @@ If you're new to databases in the Shiny world, we recommend using `dplyr` and `p
 
 There are many more minor features, small improvements, and bug fixes than we can cover here, so we'll just mention a few of the more noteworthy ones (the full changelog, with links to all the relevant issues and pull requests, is right below this section):
 
-*    **Error Sanitization**: you now have the option to sanitize error messages; in other words, the content of the original error message can be suppressed so that it doesn't leak any sensitive information. To sanitize errors everywhere in your app, just add `options(shiny.sanitize.errors = TRUE)` somewhere in your app. Read [this article](http://shiny.rstudio-staging.com/articles/sanitize-errors.html) for more, or play with the [demo app](https://gallery.shinyapps.io/110-error-sanitization/).
+*    **Error Sanitization**: you now have the option to sanitize error messages; in other words, the content of the original error message can be suppressed so that it doesn't leak any sensitive information. To sanitize errors everywhere in your app, just add `options(shiny.sanitize.errors = TRUE)` somewhere in your app. Read [this article](http://shiny.rstudio.com/articles/sanitize-errors.html) for more, or play with the [demo app](https://gallery.shinyapps.io/110-error-sanitization/).
 
 *    **Code Diagnostics**: if there is an error parsing `ui.R`, `server.R`, `app.R`, or `global.R`, Shiny will search the code for missing commas, extra commas, and unmatched braces, parens, and brackets, and will print out messages pointing out those problems. ([#1126](https://github.com/rstudio/shiny/pull/1126))
 
-*    **Reactlog visualization**: by default, the [`showReactLog()` function](http://shiny.rstudio-staging.com/reference/shiny/latest/showReactLog.html) (which brings up the reactive graph) also displays the time that each reactive and observer were active for:
+*    **Reactlog visualization**: by default, the [`showReactLog()` function](http://shiny.rstudio.com/reference/shiny/latest/showReactLog.html) (which brings up the reactive graph) also displays the time that each reactive and observer were active for:
 
       <p align="center">
-      <img src="http://shiny.rstudio-staging.com/images/reactlog.png" alt="modal-dialog" width="75%"/>
+      <img src="http://shiny.rstudio.com/images/reactlog.png" alt="modal-dialog" width="75%"/>
       </p>
 
       This new feature can be turned off with `showReactLog(time = FALSE)`. This may be convenient if you have a large graph and don't want to have this new information cluttering it up. The elapsed time info shows up above each relevant node's label, and the time is also coded by color: the slowest reactive will be dark red and the fastest will be light red.
@@ -82,10 +518,10 @@ There are many more minor features, small improvements, and bug fixes than we ca
 *    **Nicer-looking tables**: we've made tables generated with `renderTable()` look cleaner and more modern. While this won't break any older code, the finished look of your table will be quite a bit different, as the following image shows:
 
       <p align="center">
-      <img src="http://shiny.rstudio-staging.com/images/render-table.png" alt="render-table" width="75%"/>
+      <img src="http://shiny.rstudio.com/images/render-table.png" alt="render-table" width="75%"/>
       </p>
 
-      For more, read our [short article](http://shiny.rstudio-staging.com/articles/render-table.html) about this update, experiment with all the new features in this [demo app](https://gallery.shinyapps.io/109-render-table/), or check out the [reference documentation](http://shiny.rstudio-staging.com/reference/shiny/latest/renderTable.html).
+      For more, read our [short article](http://shiny.rstudio.com/articles/render-table.html) about this update, experiment with all the new features in this [demo app](https://gallery.shinyapps.io/109-render-table/), or check out the [reference documentation](http://shiny.rstudio.com/reference/shiny/latest/renderTable.html).
 
 ## Full changelog
 
@@ -301,7 +737,7 @@ shiny 0.12.1
 shiny 0.12.0
 ============
 
-In addition to the changes listed below (in the *Full Changelog* section), there is an infrastructure change that could affect existing Shiny apps. 
+In addition to the changes listed below (in the *Full Changelog* section), there is an infrastructure change that could affect existing Shiny apps.
 
 ### JSON serialization
 
@@ -392,13 +828,13 @@ Shiny 0.11 switches away from the Bootstrap 2 web framework to the next version,
 ### Known issues for migration
 
 *    In Bootstrap 3, images in `<img>` tags are no longer automatically scaled to the width of their container. If you use `img()` in your UI code, or `<img>` tags in your raw HTML source, it's possible that they will be too large in the new version of Shiny. To address this you can add the `img-responsive` class:
-    
+
     ```r
     img(src = "picture.png", class = "img-responsive")
     ```
-    
+
     The R code above will generate the following HTML:
-    
+
     ```html
     <img src="picture.png" class="img-responsive">
     ```

R/app.R

@@ -20,9 +20,11 @@
 #' @param onStart A function that will be called before the app is actually run.
 #'   This is only needed for \code{shinyAppObj}, since in the \code{shinyAppDir}
 #'   case, a \code{global.R} file can be used for this purpose.
-#' @param options Named options that should be passed to the `runApp` call. You
-#'   can also specify \code{width} and \code{height} parameters which provide a
-#'   hint to the embedding environment about the ideal height/width for the app.
+#' @param options Named options that should be passed to the \code{runApp} call
+#'   (these can be any of the following: "port", "launch.browser", "host", "quiet",
+#'   "display.mode" and "test.mode"). You can also specify \code{width} and
+#'   \code{height} parameters which provide a hint to the embedding environment
+#'   about the ideal height/width for the app.
 #' @param uiPattern A regular expression that will be applied to each \code{GET}
 #'   request to determine whether the \code{ui} should be used to handle the
 #'   request. Note that the entire request path must match the regular
@@ -39,6 +41,8 @@
 #' @examples
 #' ## Only run this example in interactive R sessions
 #' if (interactive()) {
+#'   options(device.ask.default = FALSE)
+#'
 #'   shinyApp(
 #'     ui = fluidPage(
 #'       numericInput("n", "n", 1),
@@ -67,7 +71,7 @@
 #' }
 #' @export
 shinyApp <- function(ui=NULL, server=NULL, onStart=NULL, options=list(),
-                     uiPattern="/", enableBookmarking = NULL) {
+                     uiPattern="/", enableBookmarking=NULL) {
   if (is.null(server)) {
     stop("`server` missing from shinyApp")
   }
@@ -208,7 +212,7 @@ shinyAppDir_serverR <- function(appDir, options=list()) {
     if (file.exists(file.path.ci(appDir, "global.R")))
       sourceUTF8(file.path.ci(appDir, "global.R"))
   }
-  onEnd <- function() {
+  onStop <- function() {
     setwd(oldwd)
     monitorHandle()
     monitorHandle <<- NULL
@@ -219,7 +223,7 @@ shinyAppDir_serverR <- function(appDir, options=list()) {
       httpHandler = joinHandlers(c(uiHandler, wwwDir, fallbackWWWDir)),
       serverFuncSource = serverFuncSource,
       onStart = onStart,
-      onEnd = onEnd,
+      onStop = onStop,
       options = options
     ),
     class = "shiny.appobj"
@@ -231,13 +235,13 @@ shinyAppDir_serverR <- function(appDir, options=list()) {
 # ignored when checking extensions. If any changes are detected, all connected
 # Shiny sessions are reloaded.
 #
-# Use option(shiny.autoreload = TRUE) to enable this behavior. Since monitoring
+# Use options(shiny.autoreload = TRUE) to enable this behavior. Since monitoring
 # for changes is expensive (we are polling for mtimes here, nothing fancy) this
 # feature is intended only for development.
 #
 # You can customize the file patterns Shiny will monitor by setting the
 # shiny.autoreload.pattern option. For example, to monitor only ui.R:
-# option(shiny.autoreload.pattern = glob2rx("ui.R"))
+# options(shiny.autoreload.pattern = glob2rx("ui.R"))
 #
 # The return value is a function that halts monitoring when called.
 initAutoReloadMonitor <- function(dir) {
@@ -313,8 +317,9 @@ shinyAppDir_appR <- function(fileName, appDir, options=list())
     oldwd <<- getwd()
     setwd(appDir)
     monitorHandle <<- initAutoReloadMonitor(appDir)
+    if (!is.null(appObj()$onStart)) appObj()$onStart()
   }
-  onEnd <- function() {
+  onStop <- function() {
     setwd(oldwd)
     monitorHandle()
     monitorHandle <<- NULL
@@ -325,7 +330,7 @@ shinyAppDir_appR <- function(fileName, appDir, options=list())
       httpHandler = joinHandlers(c(dynHttpHandler, wwwDir, fallbackWWWDir)),
       serverFuncSource = dynServerFuncSource,
       onStart = onStart,
-      onEnd = onEnd,
+      onStop = onStop,
       options = options
     ),
     class = "shiny.appobj"
@@ -373,11 +378,13 @@ is.shiny.appobj <- function(x) {
 print.shiny.appobj <- function(x, ...) {
   opts <- x$options %OR% list()
   opts <- opts[names(opts) %in%
-      c("port", "launch.browser", "host", "quiet", "display.mode")]
+      c("port", "launch.browser", "host", "quiet",
+        "display.mode", "test.mode")]
 
-  args <- c(list(x), opts)
+  # Quote x and put runApp in quotes so that there's a nicer stack trace (#1851)
+  args <- c(list(quote(x)), opts)
 
-  do.call(runApp, args)
+  do.call("runApp", args)
 }
 
 #' @rdname shinyApp

R/bookmark-state.R

@@ -349,7 +349,7 @@ RestoreContext <- R6Class("RestoreContext",
         mapply(names(vals), vals, SIMPLIFY = FALSE,
           FUN = function(name, value) {
             tryCatch(
-              jsonlite::fromJSON(value),
+              safeFromJSON(value),
               error = function(e) {
                 stop("Failed to parse URL parameter \"", name, "\"")
               }
@@ -362,7 +362,7 @@ RestoreContext <- R6Class("RestoreContext",
       self$input <- RestoreInputSet$new(inputs)
 
       values <- valuesFromJSON(values)
-      self$values <- list2env(values, self$values)
+      self$values <- list2env2(values, self$values)
     }
   )
 )
@@ -385,7 +385,7 @@ RestoreInputSet <- R6Class("RestoreInputSet",
 
   public = list(
     initialize = function(values) {
-      private$values <- list2env(values, parent = emptyenv())
+      private$values <- list2env2(values, parent = emptyenv())
     },
 
     exists = function(name) {
@@ -448,14 +448,30 @@ withRestoreContext <- function(ctx, expr) {
 
 # Is there a current restore context?
 hasCurrentRestoreContext <- function() {
-  restoreCtxStack$size() > 0
+  if (restoreCtxStack$size() > 0)
+    return(TRUE)
+  domain <- getDefaultReactiveDomain()
+  if (!is.null(domain) && !is.null(domain$restoreContext))
+    return(TRUE)
+  
+  return(FALSE)
 }
 
-# Call to access the current restore context
+# Call to access the current restore context. First look on the restore
+# context stack, and if not found, then see if there's one on the current
+# reactive domain. In practice, the only time there will be a restore context
+# on the stack is when executing the UI function; when executing server code,
+# the restore context will be attached to the domain/session.
 getCurrentRestoreContext <- function() {
   ctx <- restoreCtxStack$peek()
   if (is.null(ctx)) {
-    stop("No restore context found")
+    domain <- getDefaultReactiveDomain()
+
+    if (is.null(domain) || is.null(domain$restoreContext)) {
+      stop("No restore context found")
+    }
+
+    ctx <- domain$restoreContext
   }
   ctx
 }
@@ -493,12 +509,90 @@ restoreInput <- function(id, default) {
 #' It typically is called from an observer. Note that this will not work in
 #' Internet Explorer 9 and below.
 #'
+#' For \code{mode = "push"}, only three updates are currently allowed:
+#' \enumerate{
+#'   \item the query string (format: \code{?param1=val1&param2=val2})
+#'   \item the hash (format: \code{#hash})
+#'   \item both the query string and the hash
+#'     (format: \code{?param1=val1&param2=val2#hash})
+#' }
+#'
+#' In other words, if \code{mode = "push"}, the \code{queryString} must start
+#' with either \code{?} or with \code{#}.
+#'
+#' A technical curiosity: under the hood, this function is calling the HTML5
+#' history API (which is where the names for the \code{mode} argument come from).
+#' When \code{mode = "replace"}, the function called is
+#' \code{window.history.replaceState(null, null, queryString)}.
+#' When \code{mode = "push"}, the function called is
+#' \code{window.history.pushState(null, null, queryString)}.
+#'
 #' @param queryString The new query string to show in the location bar.
+#' @param mode When the query string is updated, should the the current history
+#'   entry be replaced (default), or should a new history entry be pushed onto
+#'   the history stack? The former should only be used in a live bookmarking
+#'   context. The latter is useful if you want to navigate between states using
+#'   the browser's back and forward buttons. See Examples.
 #' @param session A Shiny session object.
-#' @seealso \code{\link{enableBookmarking}} for examples.
+#' @seealso \code{\link{enableBookmarking}}, \code{\link{getQueryString}}
+#' @examples
+#' ## Only run these examples in interactive sessions
+#' if (interactive()) {
+#'
+#'   ## App 1: Doing "live" bookmarking
+#'   ## Update the browser's location bar every time an input changes.
+#'   ## This should not be used with enableBookmarking("server"),
+#'   ## because that would create a new saved state on disk every time
+#'   ## the user changes an input.
+#'   enableBookmarking("url")
+#'   shinyApp(
+#'     ui = function(req) {
+#'       fluidPage(
+#'         textInput("txt", "Text"),
+#'         checkboxInput("chk", "Checkbox")
+#'       )
+#'     },
+#'     server = function(input, output, session) {
+#'       observe({
+#'         # Trigger this observer every time an input changes
+#'         reactiveValuesToList(input)
+#'         session$doBookmark()
+#'       })
+#'       onBookmarked(function(url) {
+#'         updateQueryString(url)
+#'       })
+#'     }
+#'   )
+#'
+#'   ## App 2: Printing the value of the query string
+#'   ## (Use the back and forward buttons to see how the browser
+#'   ## keeps a record of each state)
+#'   shinyApp(
+#'     ui = fluidPage(
+#'       textInput("txt", "Enter new query string"),
+#'       helpText("Format: ?param1=val1&param2=val2"),
+#'       actionButton("go", "Update"),
+#'       hr(),
+#'       verbatimTextOutput("query")
+#'     ),
+#'     server = function(input, output, session) {
+#'       observeEvent(input$go, {
+#'         updateQueryString(input$txt, mode = "push")
+#'       })
+#'       output$query <- renderText({
+#'         query <- getQueryString()
+#'         queryText <- paste(names(query), query,
+#'                        sep = "=", collapse=", ")
+#'         paste("Your query string is:\n", queryText)
+#'       })
+#'     }
+#'   )
+#' }
 #' @export
-updateQueryString <- function(queryString, session = getDefaultReactiveDomain()) {
-  session$updateQueryString(queryString)
+updateQueryString <- function(queryString, mode = c("replace", "push"),
+                              session = getDefaultReactiveDomain()) {
+  mode <- match.arg(mode)
+  session$updateQueryString(queryString, mode)
 }
 
 #' Create a button for bookmarking/sharing

R/bootstrap-layout.R

@@ -277,6 +277,7 @@ titlePanel <- function(title, windowTitle=title) {
 #' @examples
 #' ## Only run examples in interactive R sessions
 #' if (interactive()) {
+#' options(device.ask.default = FALSE)
 #'
 #' # Define UI
 #' ui <- fluidPage(
@@ -442,6 +443,7 @@ inputPanel <- function(...) {
 #' @examples
 #' ## Only run examples in interactive R sessions
 #' if (interactive()) {
+#' options(device.ask.default = FALSE)
 #'
 #' # Server code used for all examples
 #' server <- function(input, output) {
@@ -586,7 +588,7 @@ flexfill <- function(..., direction, flex, width = width, height = height) {
   }
 
   if (length(flex) > length(children)) {
-    flex <- flex[1:length(children)]
+    flex <- flex[seq_along(children)]
   }
 
   # The dimension along the main axis

R/bootstrap.R

@@ -285,7 +285,8 @@ pageWithSidebar <- function(headerPanel,
 #'   example below).
 #'
 #' @seealso \code{\link{tabPanel}}, \code{\link{tabsetPanel}},
-#'   \code{\link{updateNavbarPage}}
+#'   \code{\link{updateNavbarPage}}, \code{\link{insertTab}},
+#'   \code{\link{showTab}}
 #'
 #' @examples
 #' navbarPage("App Title",
@@ -342,10 +343,18 @@ navbarPage <- function(title,
   tabs <- list(...)
   tabset <- buildTabset(tabs, "nav navbar-nav", NULL, id, selected)
 
+  # function to return plain or fluid class name
+  className <- function(name) {
+    if (fluid)
+      paste(name, "-fluid", sep="")
+    else
+      name
+  }
+
   # built the container div dynamically to support optional collapsibility
   if (collapsible) {
     navId <- paste("navbar-collapse-", p_randomInt(1000, 10000), sep="")
-    containerDiv <- div(class="container",
+    containerDiv <- div(class=className("container"),
       div(class="navbar-header",
         tags$button(type="button", class="navbar-toggle collapsed",
           `data-toggle`="collapse", `data-target`=paste0("#", navId),
@@ -359,7 +368,7 @@ navbarPage <- function(title,
       div(class="navbar-collapse collapse", id=navId, tabset$navList)
     )
   } else {
-    containerDiv <- div(class="container",
+    containerDiv <- div(class=className("container"),
       div(class="navbar-header",
         span(class="navbar-brand", pageTitle)
       ),
@@ -367,14 +376,6 @@ navbarPage <- function(title,
     )
   }
 
-  # function to return plain or fluid class name
-  className <- function(name) {
-    if (fluid)
-      paste(name, "-fluid", sep="")
-    else
-      name
-  }
-
   # build the main tab content div
   contentDiv <- div(class=className("container"))
   if (!is.null(header))
@@ -393,10 +394,15 @@ navbarPage <- function(title,
   )
 }
 
+#' @param menuName A name that identifies this \code{navbarMenu}. This
+#'   is needed if you want to insert/remove or show/hide an entire
+#'   \code{navbarMenu}.
+#'
 #' @rdname navbarPage
 #' @export
-navbarMenu <- function(title, ..., icon = NULL) {
+navbarMenu <- function(title, ..., menuName = title, icon = NULL) {
   structure(list(title = title,
+                 menuName = menuName,
                  tabs = list(...),
                  iconClass = iconClass(icon)),
             class = "shiny.navbarmenu")
@@ -502,6 +508,8 @@ mainPanel <- function(..., width = 8) {
 #'
 #' @param condition A JavaScript expression that will be evaluated repeatedly to
 #'   determine whether the panel should be displayed.
+#' @param ns The \code{\link[=NS]{namespace}} object of the current module, if
+#'   any.
 #' @param ... Elements to include in the panel.
 #'
 #' @note You are not recommended to use special JavaScript characters such as a
@@ -510,32 +518,55 @@ mainPanel <- function(..., width = 8) {
 #'   \code{input["foo.bar"]} instead of \code{input.foo.bar} to read the input
 #'   value.
 #' @examples
-#' sidebarPanel(
-#'    selectInput(
-#'       "plotType", "Plot Type",
-#'       c(Scatter = "scatter",
-#'         Histogram = "hist")),
-#'
-#'    # Only show this panel if the plot type is a histogram
-#'    conditionalPanel(
-#'       condition = "input.plotType == 'hist'",
-#'       selectInput(
-#'          "breaks", "Breaks",
-#'          c("Sturges",
-#'            "Scott",
-#'            "Freedman-Diaconis",
-#'            "[Custom]" = "custom")),
-#'
-#'       # Only show this panel if Custom is selected
+#' ## Only run this example in interactive R sessions
+#' if (interactive()) {
+#'   ui <- fluidPage(
+#'     sidebarPanel(
+#'       selectInput("plotType", "Plot Type",
+#'         c(Scatter = "scatter", Histogram = "hist")
+#'       ),
+#'       # Only show this panel if the plot type is a histogram
 #'       conditionalPanel(
-#'          condition = "input.breaks == 'custom'",
-#'          sliderInput("breakCount", "Break Count", min=1, max=1000, value=10)
+#'         condition = "input.plotType == 'hist'",
+#'         selectInput(
+#'           "breaks", "Breaks",
+#'           c("Sturges", "Scott", "Freedman-Diaconis", "[Custom]" = "custom")
+#'         ),
+#'         # Only show this panel if Custom is selected
+#'         conditionalPanel(
+#'           condition = "input.breaks == 'custom'",
+#'           sliderInput("breakCount", "Break Count", min = 1, max = 50, value = 10)
+#'         )
 #'       )
-#'    )
-#' )
+#'     ),
+#'     mainPanel(
+#'       plotOutput("plot")
+#'     )
+#'   )
+#'
+#'   server <- function(input, output) {
+#'     x <- rnorm(100)
+#'     y <- rnorm(100)
+#'
+#'     output$plot <- renderPlot({
+#'       if (input$plotType == "scatter") {
+#'         plot(x, y)
+#'       } else {
+#'         breaks <- input$breaks
+#'         if (breaks == "custom") {
+#'           breaks <- input$breakCount
+#'         }
+#'
+#'         hist(x, breaks = breaks)
+#'       }
+#'     })
+#'   }
+#'
+#'   shinyApp(ui, server)
+#' }
 #' @export
-conditionalPanel <- function(condition, ...) {
-  div('data-display-if'=condition, ...)
+conditionalPanel <- function(condition, ..., ns = NS(NULL)) {
+  div(`data-display-if`=condition, `data-ns-prefix`=ns(""), ...)
 }
 
 #' Create a help text element
@@ -609,7 +640,8 @@ tabPanel <- function(title, ..., value = title, icon = NULL) {
 #'   Bootstrap 3.
 #' @return A tabset that can be passed to \code{\link{mainPanel}}
 #'
-#' @seealso \code{\link{tabPanel}}, \code{\link{updateTabsetPanel}}
+#' @seealso \code{\link{tabPanel}}, \code{\link{updateTabsetPanel}},
+#'   \code{\link{insertTab}}, \code{\link{showTab}}
 #'
 #' @examples
 #' # Show a tabset that includes a plot, summary, and
@@ -676,7 +708,9 @@ tabsetPanel <- function(...,
 #'   supported. This is because version 0.11 switched to Bootstrap 3, which
 #'   doesn't support separators.
 #'
-#' @seealso \code{\link{tabPanel}}, \code{\link{updateNavlistPanel}}
+#' @seealso \code{\link{tabPanel}}, \code{\link{updateNavlistPanel}},
+#'    \code{\link{insertTab}}, \code{\link{showTab}}
+#'
 #' @examples
 #' fluidPage(
 #'
@@ -726,189 +760,158 @@ navlistPanel <- function(...,
     fixedRow(columns)
 }
 
+# Helpers to build tabsetPanels (& Co.) and their elements
+markTabAsSelected <- function(x) {
+  attr(x, "selected") <- TRUE
+  x
+}
 
-buildTabset <- function(tabs, ulClass, textFilter = NULL,
-                        id = NULL, selected = NULL) {
+isTabSelected <- function(x) {
+  isTRUE(attr(x, "selected", exact = TRUE))
+}
 
-  # This function proceeds in two phases. First, it scans over all the items
-  # to find and mark which tab should start selected. Then it actually builds
-  # the tab nav and tab content lists.
+containsSelectedTab <- function(tabs) {
+  any(vapply(tabs, isTabSelected, logical(1)))
+}
 
-  # Mark an item as selected
-  markSelected <- function(x) {
-    attr(x, "selected") <- TRUE
-    x
-  }
+findAndMarkSelectedTab <- function(tabs, selected, foundSelected) {
+  tabs <- lapply(tabs, function(div) {
+    if (foundSelected || is.character(div)) {
+      # Strings are not selectable items
 
-  # Returns TRUE if an item is selected
-  isSelected <- function(x) {
-    isTRUE(attr(x, "selected", exact = TRUE))
-  }
-
-  # Returns TRUE if a list of tab items contains a selected tab, FALSE
-  # otherwise.
-  containsSelected <- function(tabs) {
-    any(vapply(tabs, isSelected, logical(1)))
-  }
-
-  # Take a pass over all tabs, and mark the selected tab.
-  foundSelectedItem <- FALSE
-  findAndMarkSelected <- function(tabs, selected) {
-    lapply(tabs, function(divTag) {
-      if (foundSelectedItem) {
-        # If we already found the selected tab, no need to keep looking
-
-      } else if (is.character(divTag)) {
-        # Strings don't represent selectable items
-
-      } else if (inherits(divTag, "shiny.navbarmenu")) {
-        # Navbar menu
-        divTag$tabs <- findAndMarkSelected(divTag$tabs, selected)
+    } else if (inherits(div, "shiny.navbarmenu")) {
+      # Recur for navbarMenus
+      res <- findAndMarkSelectedTab(div$tabs, selected, foundSelected)
+      div$tabs <- res$tabs
+      foundSelected <<- res$foundSelected
 
+    } else {
+      # Base case: regular tab item. If the `selected` argument is
+      # provided, check for a match in the existing tabs; else,
+      # mark first available item as selected
+      if (is.null(selected)) {
+        foundSelected <<- TRUE
+        div <- markTabAsSelected(div)
       } else {
-        # Regular tab item
-        if (is.null(selected)) {
-          # If selected tab isn't specified, mark first available item
-          # as selected.
-          foundSelectedItem <<- TRUE
-          divTag <- markSelected(divTag)
-
-        } else {
-          # If selected tab is specified, check for a match
-          tabValue <- divTag$attribs$`data-value` %OR% divTag$attribs$title
-          if (identical(selected, tabValue)) {
-            foundSelectedItem <<- TRUE
-            divTag <- markSelected(divTag)
-          }
+        tabValue <- div$attribs$`data-value` %OR% div$attribs$title
+        if (identical(selected, tabValue)) {
+          foundSelected <<- TRUE
+          div <- markTabAsSelected(div)
         }
       }
+    }
+    return(div)
+  })
+  return(list(tabs = tabs, foundSelected = foundSelected))
+}
 
-      return(divTag)
-    })
-  }
-
-
-  # Append an optional icon to an aTag
-  appendIcon <- function(aTag, iconClass) {
-    if (!is.null(iconClass)) {
+# Returns the icon object (or NULL if none), provided either a
+# tabPanel, OR the icon class
+getIcon <- function(tab = NULL, iconClass = NULL) {
+  if (!is.null(tab)) iconClass <- tab$attribs$`data-icon-class`
+  if (!is.null(iconClass)) {
+    if (grepl("fa-", iconClass, fixed = TRUE)) {
       # for font-awesome we specify fixed-width
-      if (grepl("fa-", iconClass, fixed = TRUE))
-        iconClass <- paste(iconClass, "fa-fw")
-      aTag <- tagAppendChild(aTag, icon(name = NULL, class = iconClass))
+      iconClass <- paste(iconClass, "fa-fw")
     }
-    aTag
+    icon(name = NULL, class = iconClass)
+  } else NULL
+}
+
+# Text filter for navbarMenu's (plain text) separators
+navbarMenuTextFilter <- function(text) {
+  if (grepl("^\\-+$", text)) tags$li(class = "divider")
+  else tags$li(class = "dropdown-header", text)
+}
+
+# This function is called internally by navbarPage, tabsetPanel
+# and navlistPanel
+buildTabset <- function(tabs, ulClass, textFilter = NULL, id = NULL,
+                        selected = NULL, foundSelected = FALSE) {
+
+  res <- findAndMarkSelectedTab(tabs, selected, foundSelected)
+  tabs <- res$tabs
+  foundSelected <- res$foundSelected
+
+  # add input class if we have an id
+  if (!is.null(id)) ulClass <- paste(ulClass, "shiny-tab-input")
+
+  if (anyNamed(tabs)) {
+    nms <- names(tabs)
+    nms <- nms[nzchar(nms)]
+    stop("Tabs should all be unnamed arguments, but some are named: ",
+      paste(nms, collapse = ", "))
   }
 
-  # Build the tabset
-  build <- function(tabs, ulClass, textFilter = NULL, id = NULL) {
-    # add tab input sentinel class if we have an id
-    if (!is.null(id))
-      ulClass <- paste(ulClass, "shiny-tab-input")
+  tabsetId <- p_randomInt(1000, 10000)
+  tabs <- lapply(seq_len(length(tabs)), buildTabItem,
+            tabsetId = tabsetId, foundSelected = foundSelected,
+            tabs = tabs, textFilter = textFilter)
 
-    if (anyNamed(tabs)) {
-      nms <- names(tabs)
-      nms <- nms[nzchar(nms)]
-      stop("Tabs should all be unnamed arguments, but some are named: ",
-           paste(nms, collapse = ", "))
+  tabNavList <- tags$ul(class = ulClass, id = id,
+                  `data-tabsetid` = tabsetId, lapply(tabs, "[[", 1))
+
+  tabContent <- tags$div(class = "tab-content",
+                  `data-tabsetid` = tabsetId, lapply(tabs, "[[", 2))
+
+  list(navList = tabNavList, content = tabContent)
+}
+
+# Builds tabPanel/navbarMenu items (this function used to be
+# declared inside the buildTabset() function and it's been
+# refactored for clarity and reusability). Called internally
+# by buildTabset.
+buildTabItem <- function(index, tabsetId, foundSelected, tabs = NULL,
+                         divTag = NULL, textFilter = NULL) {
+
+  divTag <- if (!is.null(divTag)) divTag else tabs[[index]]
+
+  if (is.character(divTag) && !is.null(textFilter)) {
+    # text item: pass it to the textFilter if it exists
+    liTag <- textFilter(divTag)
+    divTag <- NULL
+
+  } else if (inherits(divTag, "shiny.navbarmenu")) {
+    # navbarMenu item: build the child tabset
+    tabset <- buildTabset(divTag$tabs, "dropdown-menu",
+      navbarMenuTextFilter, foundSelected = foundSelected)
+
+    # if this navbarMenu contains a selected item, mark it active
+    containsSelected <- containsSelectedTab(divTag$tabs)
+    liTag <- tags$li(
+      class = paste0("dropdown", if (containsSelected) " active"),
+      tags$a(href = "#",
+        class = "dropdown-toggle", `data-toggle` = "dropdown",
+        `data-value` = divTag$menuName,
+        getIcon(iconClass = divTag$iconClass),
+        divTag$title, tags$b(class = "caret")
+      ),
+      tabset$navList   # inner tabPanels items
+    )
+    # list of tab content divs from the child tabset
+    divTag <- tabset$content$children
+
+  } else {
+    # tabPanel item: create the tab's liTag and divTag
+    tabId <- paste("tab", tabsetId, index, sep = "-")
+    liTag <- tags$li(
+               tags$a(
+                 href = paste("#", tabId, sep = ""),
+                 `data-toggle` = "tab",
+                 `data-value` = divTag$attribs$`data-value`,
+                 getIcon(iconClass = divTag$attribs$`data-icon-class`),
+                 divTag$attribs$title
+               )
+    )
+    # if this tabPanel is selected item, mark it active
+    if (isTabSelected(divTag)) {
+      liTag$attribs$class <- "active"
+      divTag$attribs$class <- "tab-pane active"
     }
-
-    tabNavList <- tags$ul(class = ulClass, id = id)
-    tabContent <- tags$div(class = "tab-content")
-    tabsetId <- p_randomInt(1000, 10000)
-    tabId <- 1
-
-    buildItem <- function(divTag) {
-      # check for text; pass it to the textFilter or skip it if there is none
-      if (is.character(divTag)) {
-        if (!is.null(textFilter)) {
-          tabNavList <<- tagAppendChild(tabNavList, textFilter(divTag))
-        }
-
-      } else if (inherits(divTag, "shiny.navbarmenu")) {
-
-        # create the a tag
-        aTag <- tags$a(href="#",
-                       class="dropdown-toggle",
-                       `data-toggle`="dropdown")
-
-        # add optional icon
-        aTag <- appendIcon(aTag, divTag$iconClass)
-
-        # add the title and caret
-        aTag <- tagAppendChild(aTag, divTag$title)
-        aTag <- tagAppendChild(aTag, tags$b(class="caret"))
-
-        # build the dropdown list element
-        liTag <- tags$li(class = "dropdown", aTag)
-
-        # text filter for separators
-        textFilter <- function(text) {
-          if (grepl("^\\-+$", text))
-            tags$li(class="divider")
-          else
-            tags$li(class="dropdown-header", text)
-        }
-
-        # build the child tabset
-        tabset <- build(divTag$tabs, "dropdown-menu", textFilter)
-        liTag <- tagAppendChild(liTag, tabset$navList)
-
-        # If this navbar menu contains a selected item, mark it as active
-        if (containsSelected(divTag$tabs)) {
-          liTag$attribs$class <- paste(liTag$attribs$class, "active")
-        }
-
-        tabNavList <<- tagAppendChild(tabNavList, liTag)
-        # don't add a standard tab content div, rather add the list of tab
-        # content divs that are contained within the tabset
-        tabContent <<- tagAppendChildren(tabContent,
-                                        list = tabset$content$children)
-
-      } else {
-        # Standard navbar item
-        # compute id and assign it to the div
-        thisId <- paste("tab", tabsetId, tabId, sep="-")
-        divTag$attribs$id <- thisId
-        tabId <<- tabId + 1
-
-        tabValue <- divTag$attribs$`data-value`
-
-        # create the a tag
-        aTag <- tags$a(href=paste("#", thisId, sep=""),
-                       `data-toggle` = "tab",
-                       `data-value` = tabValue)
-
-        # append optional icon
-        aTag <- appendIcon(aTag, divTag$attribs$`data-icon-class`)
-
-        # add the title
-        aTag <- tagAppendChild(aTag, divTag$attribs$title)
-
-        # create the li tag
-        liTag <- tags$li(aTag)
-
-        # If selected, set appropriate classes on li tag and div tag.
-        if (isSelected(divTag)) {
-          liTag$attribs$class <- "active"
-          divTag$attribs$class <- "tab-pane active"
-        }
-
-        divTag$attribs$title <- NULL
-
-        # append the elements to our lists
-        tabNavList <<- tagAppendChild(tabNavList, liTag)
-        tabContent <<- tagAppendChild(tabContent, divTag)
-      }
-    }
-
-    lapply(tabs, buildItem)
-    list(navList = tabNavList, content = tabContent)
+    divTag$attribs$id <- tabId
+    divTag$attribs$title <- NULL
   }
-
-
-  # Finally, actually invoke the functions to do the processing.
-  tabs <- findAndMarkSelected(tabs, selected)
-  build(tabs, ulClass, textFilter, id)
+  return(list(liTag = liTag, divTag = divTag))
 }
 
 
@@ -935,21 +938,34 @@ textOutput <- function(outputId, container = if (inline) span else div, inline =
 #' Render a reactive output variable as verbatim text within an
 #' application page. The text will be included within an HTML \code{pre} tag.
 #' @param outputId output variable to read the value from
+#' @param placeholder if the output is empty or \code{NULL}, should an empty
+#'   rectangle be displayed to serve as a placeholder? (does not affect
+#'   behavior when the the output in nonempty)
 #' @return A verbatim text output element that can be included in a panel
 #' @details Text is HTML-escaped prior to rendering. This element is often used
-#' with the \link{renderPrint} function to preserve fixed-width formatting
-#' of printed objects.
+#'   with the \link{renderPrint} function to preserve fixed-width formatting
+#'   of printed objects.
 #' @examples
-#' mainPanel(
-#'   h4("Summary"),
-#'   verbatimTextOutput("summary"),
-#'
-#'   h4("Observations"),
-#'   tableOutput("view")
-#' )
+#' ## Only run this example in interactive R sessions
+#' if (interactive()) {
+#'   shinyApp(
+#'     ui = basicPage(
+#'       textInput("txt", "Enter the text to display below:"),
+#'       verbatimTextOutput("default"),
+#'       verbatimTextOutput("placeholder", placeholder = TRUE)
+#'     ),
+#'     server = function(input, output) {
+#'       output$default <- renderText({ input$txt })
+#'       output$placeholder <- renderText({ input$txt })
+#'     }
+#'   )
+#' }
 #' @export
-verbatimTextOutput <- function(outputId) {
-  textOutput(outputId, container = pre)
+verbatimTextOutput <- function(outputId, placeholder = FALSE) {
+  pre(id = outputId,
+      class = paste(c("shiny-text-output", if (!placeholder) "noplaceholder"),
+                    collapse = " ")
+      )
 }
 
 
@@ -1123,7 +1139,7 @@ imageOutput <- function(outputId, width = "100%", height="400px",
 #'   same \code{id} to disappear.
 #' @inheritParams textOutput
 #' @note The arguments \code{clickId} and \code{hoverId} only work for R base
-#'   graphics (see the \pkg{\link{graphics}} package). They do not work for
+#'   graphics (see the \pkg{\link[graphics:graphics-package]{graphics}} package). They do not work for
 #'   \pkg{\link[grid:grid-package]{grid}}-based graphics, such as \pkg{ggplot2},
 #'   \pkg{lattice}, and so on.
 #'
@@ -1421,6 +1437,7 @@ uiOutput <- htmlOutput
 #'   is assigned to.
 #' @param label The label that should appear on the button.
 #' @param class Additional CSS classes to apply to the tag, if any.
+#' @param ... Other arguments to pass to the container tag function.
 #'
 #' @examples
 #' \dontrun{
@@ -1439,27 +1456,29 @@ uiOutput <- htmlOutput
 #' }
 #'
 #' @aliases downloadLink
-#' @seealso downloadHandler
+#' @seealso \code{\link{downloadHandler}}
 #' @export
 downloadButton <- function(outputId,
                            label="Download",
-                           class=NULL) {
+                           class=NULL, ...) {
   aTag <- tags$a(id=outputId,
                  class=paste('btn btn-default shiny-download-link', class),
                  href='',
                  target='_blank',
+                 download=NA,
                  icon("download"),
-                 label)
+                 label, ...)
 }
 
 #' @rdname downloadButton
 #' @export
-downloadLink <- function(outputId, label="Download", class=NULL) {
+downloadLink <- function(outputId, label="Download", class=NULL, ...) {
   tags$a(id=outputId,
          class=paste(c('shiny-download-link', class), collapse=" "),
          href='',
          target='_blank',
-         label)
+         download=NA,
+         label, ...)
 }
 
 
@@ -1470,8 +1489,9 @@ downloadLink <- function(outputId, label="Download", class=NULL) {
 #' \code{\link{navbarPage}}.
 #'
 #' @param name Name of icon. Icons are drawn from the
-#'   \href{http://fontawesome.io/icons/}{Font Awesome} and
-#'   \href{http://getbootstrap.com/components/#glyphicons}{Glyphicons"}
+#'   \href{https://fontawesome.com/}{Font Awesome Free} (currently icons from
+#'   the v5.3.1 set are supported with the v4 naming convention) and
+#'   \href{http://getbootstrap.com/components/#glyphicons}{Glyphicons}
 #'   libraries. Note that the "fa-" and "glyphicon-" prefixes should not be used
 #'   in icon names (i.e. the "fa-calendar" icon should be referred to as
 #'   "calendar")
@@ -1527,12 +1547,15 @@ icon <- function(name, class = NULL, lib = "font-awesome") {
   # font-awesome needs an additional dependency (glyphicon is in bootstrap)
   if (lib == "font-awesome") {
     htmlDependencies(iconTag) <- htmlDependency(
-      "font-awesome", "4.6.3", c(href="shared/font-awesome"),
-      stylesheet = "css/font-awesome.min.css"
+      "font-awesome", "5.3.1", "www/shared/fontawesome", package = "shiny",
+      stylesheet = c(
+        "css/all.min.css",
+        "css/v4-shims.min.css"
+      )
     )
   }
 
-  iconTag
+  htmltools::browsable(iconTag)
 }
 
 # Helper funtion to extract the class from an icon

R/cache-disk.R

@@ -0,0 +1,561 @@
+#' Create a disk cache object
+#'
+#' A disk cache object is a key-value store that saves the values as files in a
+#' directory on disk. Objects can be stored and retrieved using the \code{get()}
+#' and \code{set()} methods. Objects are automatically pruned from the cache
+#' according to the parameters \code{max_size}, \code{max_age}, \code{max_n},
+#' and \code{evict}.
+#'
+#'
+#' @section Missing Keys:
+#'
+#'   The \code{missing} and \code{exec_missing} parameters controls what happens
+#'   when \code{get()} is called with a key that is not in the cache (a cache
+#'   miss). The default behavior is to return a \code{\link{key_missing}}
+#'   object. This is a \emph{sentinel value} that indicates that the key was not
+#'   present in the cache. You can test if the returned value represents a
+#'   missing key by using the \code{\link{is.key_missing}} function. You can
+#'   also have \code{get()} return a different sentinel value, like \code{NULL}.
+#'   If you want to throw an error on a cache miss, you can do so by providing a
+#'   function for \code{missing} that takes one argument, the key, and also use
+#'   \code{exec_missing=TRUE}.
+#'
+#'   When the cache is created, you can supply a value for \code{missing}, which
+#'   sets the default value to be returned for missing values. It can also be
+#'   overridden when \code{get()} is called, by supplying a \code{missing}
+#'   argument. For example, if you use \code{cache$get("mykey", missing =
+#'   NULL)}, it will return \code{NULL} if the key is not in the cache.
+#'
+#'   If your cache is configured so that \code{get()} returns a sentinel value
+#'   to represent a cache miss, then \code{set} will also not allow you to store
+#'   the sentinel value in the cache. It will throw an error if you attempt to
+#'   do so.
+#'
+#'   Instead of returning the same sentinel value each time there is cache miss,
+#'   the cache can execute a function each time \code{get()} encounters missing
+#'   key. If the function returns a value, then \code{get()} will in turn return
+#'   that value. However, a more common use is for the function to throw an
+#'   error. If an error is thrown, then \code{get()} will not return a value.
+#'
+#'   To do this, pass a one-argument function to \code{missing}, and use
+#'   \code{exec_missing=TRUE}. For example, if you want to throw an error that
+#'   prints the missing key, you could do this:
+#'
+#'   \preformatted{
+#'   diskCache(
+#'     missing = function(key) {
+#'       stop("Attempted to get missing key: ", key)
+#'     },
+#'     exec_missing = TRUE
+#'   )
+#'   }
+#'
+#'   If you use this, the code that calls \code{get()} should be wrapped with
+#'   \code{\link{tryCatch}()} to gracefully handle missing keys.
+#'
+#' @section Cache pruning:
+#'
+#'   Cache pruning occurs when \code{set()} is called, or it can be invoked
+#'   manually by calling \code{prune()}.
+#'
+#'   The disk cache will throttle the pruning so that it does not happen on
+#'   every call to \code{set()}, because the filesystem operations for checking
+#'   the status of files can be slow. Instead, it will prune once in every 20
+#'   calls to \code{set()}, or if at least 5 seconds have elapsed since the last
+#'   prune occurred, whichever is first. These parameters are currently not
+#'   customizable, but may be in the future.
+#'
+#'   When a pruning occurs, if there are any objects that are older than
+#'   \code{max_age}, they will be removed.
+#'
+#'   The \code{max_size} and \code{max_n} parameters are applied to the cache as
+#'   a whole, in contrast to \code{max_age}, which is applied to each object
+#'   individually.
+#'
+#'   If the number of objects in the cache exceeds \code{max_n}, then objects
+#'   will be removed from the cache according to the eviction policy, which is
+#'   set with the \code{evict} parameter. Objects will be removed so that the
+#'   number of items is \code{max_n}.
+#'
+#'   If the size of the objects in the cache exceeds \code{max_size}, then
+#'   objects will be removed from the cache. Objects will be removed from the
+#'   cache so that the total size remains under \code{max_size}. Note that the
+#'   size is calculated using the size of the files, not the size of disk space
+#'   used by the files -- these two values can differ because of files are
+#'   stored in blocks on disk. For example, if the block size is 4096 bytes,
+#'   then a file that is one byte in size will take 4096 bytes on disk.
+#'
+#'   Another time that objects can be removed from the cache is when
+#'   \code{get()} is called. If the target object is older than \code{max_age},
+#'   it will be removed and the cache will report it as a missing value.
+#'
+#' @section Eviction policies:
+#'
+#' If \code{max_n} or \code{max_size} are used, then objects will be removed
+#' from the cache according to an eviction policy. The available eviction
+#' policies are:
+#'
+#'   \describe{
+#'     \item{\code{"lru"}}{
+#'       Least Recently Used. The least recently used objects will be removed.
+#'       This uses the filesystem's mtime property. When "lru" is used, each
+#'       \code{get()} is called, it will update the file's mtime.
+#'     }
+#'     \item{\code{"fifo"}}{
+#'       First-in-first-out. The oldest objects will be removed.
+#'     }
+#'   }
+#'
+#' Both of these policies use files' mtime. Note that some filesystems (notably
+#' FAT) have poor mtime resolution. (atime is not used because support for
+#' atime is worse than mtime.)
+#'
+#'
+#' @section Sharing among multiple processes:
+#'
+#' The directory for a DiskCache can be shared among multiple R processes. To
+#' do this, each R process should have a DiskCache object that uses the same
+#' directory. Each DiskCache will do pruning independently of the others, so if
+#' they have different pruning parameters, then one DiskCache may remove cached
+#' objects before another DiskCache would do so.
+#'
+#' Even though it is possible for multiple processes to share a DiskCache
+#' directory, this should not be done on networked file systems, because of
+#' slow performance of networked file systems can cause problems. If you need
+#' a high-performance shared cache, you can use one built on a database like
+#' Redis, SQLite, mySQL, or similar.
+#'
+#' When multiple processes share a cache directory, there are some potential
+#' race conditions. For example, if your code calls \code{exists(key)} to check
+#' if an object is in the cache, and then call \code{get(key)}, the object may
+#' be removed from the cache in between those two calls, and \code{get(key)}
+#' will throw an error. Instead of calling the two functions, it is better to
+#' simply call \code{get(key)}, and use \code{tryCatch()} to handle the error
+#' that is thrown if the object is not in the cache. This effectively tests for
+#' existence and gets the object in one operation.
+#'
+#' It is also possible for one processes to prune objects at the same time that
+#' another processes is trying to prune objects. If this happens, you may see
+#' a warning from \code{file.remove()} failing to remove a file that has
+#' already been deleted.
+#'
+#'
+#' @section Methods:
+#'
+#'  A disk cache object has the following methods:
+#'
+#'   \describe{
+#'     \item{\code{get(key, missing, exec_missing)}}{
+#'       Returns the value associated with \code{key}. If the key is not in the
+#'       cache, then it returns the value specified by \code{missing} or,
+#'       \code{missing} is a function and \code{exec_missing=TRUE}, then
+#'       executes \code{missing}. The function can throw an error or return the
+#'       value. If either of these parameters are specified here, then they
+#'       will override the defaults that were set when the DiskCache object was
+#'       created. See section Missing Keys for more information.
+#'     }
+#'     \item{\code{set(key, value)}}{
+#'       Stores the \code{key}-\code{value} pair in the cache.
+#'     }
+#'     \item{\code{exists(key)}}{
+#'       Returns \code{TRUE} if the cache contains the key, otherwise
+#'       \code{FALSE}.
+#'     }
+#'     \item{\code{size()}}{
+#'       Returns the number of items currently in the cache.
+#'     }
+#'     \item{\code{keys()}}{
+#'       Returns a character vector of all keys currently in the cache.
+#'     }
+#'     \item{\code{reset()}}{
+#'       Clears all objects from the cache.
+#'     }
+#'     \item{\code{destroy()}}{
+#'       Clears all objects in the cache, and removes the cache directory from
+#'       disk.
+#'     }
+#'     \item{\code{prune()}}{
+#'       Prunes the cache, using the parameters specified by \code{max_size},
+#'       \code{max_age}, \code{max_n}, and \code{evict}.
+#'     }
+#'   }
+#'
+#' @param dir Directory to store files for the cache. If \code{NULL} (the
+#'   default) it will create and use a temporary directory.
+#' @param max_age Maximum age of files in cache before they are evicted, in
+#'   seconds. Use \code{Inf} for no age limit.
+#' @param max_size Maximum size of the cache, in bytes. If the cache exceeds
+#'   this size, cached objects will be removed according to the value of the
+#'   \code{evict}. Use \code{Inf} for no size limit.
+#' @param max_n Maximum number of objects in the cache. If the number of objects
+#'   exceeds this value, then cached objects will be removed according to the
+#'   value of \code{evict}. Use \code{Inf} for no limit of number of items.
+#' @param evict The eviction policy to use to decide which objects are removed
+#'   when a cache pruning occurs. Currently, \code{"lru"} and \code{"fifo"} are
+#'   supported.
+#' @param destroy_on_finalize If \code{TRUE}, then when the DiskCache object is
+#'   garbage collected, the cache directory and all objects inside of it will be
+#'   deleted from disk. If \code{FALSE} (the default), it will do nothing when
+#'   finalized.
+#' @param missing A value to return or a function to execute when
+#'   \code{get(key)} is called but the key is not present in the cache. The
+#'   default is a \code{\link{key_missing}} object. If it is a function to
+#'   execute, the function must take one argument (the key), and you must also
+#'   use \code{exec_missing = TRUE}. If it is a function, it is useful in most
+#'   cases for it to throw an error, although another option is to return a
+#'   value. If a value is returned, that value will in turn be returned by
+#'   \code{get()}. See section Missing keys for more information.
+#' @param exec_missing If \code{FALSE} (the default), then treat \code{missing}
+#'   as a value to return when \code{get()} results in a cache miss. If
+#'   \code{TRUE}, treat \code{missing} as a function to execute when
+#'   \code{get()} results in a cache miss.
+#' @param logfile An optional filename or connection object to where logging
+#'   information will be written. To log to the console, use \code{stdout()}.
+#'
+#' @export
+diskCache <- function(
+  dir = NULL,
+  max_size = 10 * 1024 ^ 2,
+  max_age = Inf,
+  max_n = Inf,
+  evict = c("lru", "fifo"),
+  destroy_on_finalize = FALSE,
+  missing = key_missing(),
+  exec_missing = FALSE,
+  logfile = NULL)
+{
+  DiskCache$new(dir, max_size, max_age, max_n, evict, destroy_on_finalize,
+                missing, exec_missing, logfile)
+}
+
+
+DiskCache <- R6Class("DiskCache",
+  public = list(
+    initialize = function(
+      dir = NULL,
+      max_size = 10 * 1024 ^ 2,
+      max_age = Inf,
+      max_n = Inf,
+      evict = c("lru", "fifo"),
+      destroy_on_finalize = FALSE,
+      missing = key_missing(),
+      exec_missing = FALSE,
+      logfile = NULL)
+    {
+      if (exec_missing && (!is.function(missing) || length(formals(missing)) == 0)) {
+        stop("When `exec_missing` is true, `missing` must be a function that takes one argument.")
+      }
+      if (is.null(dir)) {
+        dir <- tempfile("DiskCache-")
+      }
+      if (!is.numeric(max_size)) stop("max_size must be a number. Use `Inf` for no limit.")
+      if (!is.numeric(max_age))  stop("max_age must be a number. Use `Inf` for no limit.")
+      if (!is.numeric(max_n))    stop("max_n must be a number. Use `Inf` for no limit.")
+
+      if (!dirExists(dir)) {
+        private$log(paste0("initialize: Creating ", dir))
+        dir.create(dir, recursive = TRUE)
+      }
+
+      private$dir                 <- normalizePath(dir)
+      private$max_size            <- max_size
+      private$max_age             <- max_age
+      private$max_n               <- max_n
+      private$evict               <- match.arg(evict)
+      private$destroy_on_finalize <- destroy_on_finalize
+      private$missing             <- missing
+      private$exec_missing        <- exec_missing
+      private$logfile             <- logfile
+
+      private$prune_last_time     <- as.numeric(Sys.time())
+    },
+
+    get = function(key, missing = private$missing, exec_missing = private$exec_missing) {
+      private$log(paste0('get: key "', key, '"'))
+      self$is_destroyed(throw = TRUE)
+      validate_key(key)
+
+      private$maybe_prune_single(key)
+
+      filename <- private$key_to_filename(key)
+
+      # Instead of calling exists() before fetching the value, just try to
+      # fetch the value. This reduces the risk of a race condition when
+      # multiple processes share a cache.
+      read_error <- FALSE
+      tryCatch(
+        {
+          value <- suppressWarnings(readRDS(filename))
+          if (private$evict == "lru"){
+            Sys.setFileTime(filename, Sys.time())
+          }
+        },
+        error = function(e) {
+          read_error <<- TRUE
+        }
+      )
+      if (read_error) {
+        private$log(paste0('get: key "', key, '" is missing'))
+
+        if (exec_missing) {
+          if (!is.function(missing) || length(formals(missing)) == 0) {
+            stop("When `exec_missing` is true, `missing` must be a function that takes one argument.")
+          }
+          return(missing(key))
+        } else {
+          return(missing)
+        }
+      }
+
+      private$log(paste0('get: key "', key, '" found'))
+      value
+    },
+
+    set = function(key, value) {
+      private$log(paste0('set: key "', key, '"'))
+      self$is_destroyed(throw = TRUE)
+      validate_key(key)
+
+      file <- private$key_to_filename(key)
+      temp_file <- paste0(file, "-temp-", createUniqueId(8))
+
+      save_error <- FALSE
+      ref_object <- FALSE
+      tryCatch(
+        {
+          saveRDS(value, file = temp_file,
+            refhook = function(x) {
+              ref_object <<- TRUE
+              NULL
+            }
+          )
+          file.rename(temp_file, file)
+        },
+        error = function(e) {
+          save_error <<- TRUE
+          # Unlike file.remove(), unlink() does not raise warning if file does
+          # not exist.
+          unlink(temp_file)
+        }
+      )
+      if (save_error) {
+        private$log(paste0('set: key "', key, '" error'))
+        stop('Error setting value for key "', key, '".')
+      }
+      if (ref_object) {
+        private$log(paste0('set: value is a reference object'))
+        warning("A reference object was cached in a serialized format. The restored object may not work as expected.")
+      }
+
+      private$prune_throttled()
+      invisible(self)
+    },
+
+    exists = function(key) {
+      self$is_destroyed(throw = TRUE)
+      validate_key(key)
+      file.exists(private$key_to_filename(key))
+    },
+
+    # Return all keys in the cache
+    keys = function() {
+      self$is_destroyed(throw = TRUE)
+      files <- dir(private$dir, "\\.rds$")
+      sub("\\.rds$", "", files)
+    },
+
+    remove = function(key) {
+      private$log(paste0('remove: key "', key, '"'))
+      self$is_destroyed(throw = TRUE)
+      validate_key(key)
+      file.remove(private$key_to_filename(key))
+      invisible(self)
+    },
+
+    reset = function() {
+      private$log(paste0('reset'))
+      self$is_destroyed(throw = TRUE)
+      file.remove(dir(private$dir, "\\.rds$", full.names = TRUE))
+      invisible(self)
+    },
+
+    prune = function() {
+      # TODO: It would be good to add parameters `n` and `size`, so that the
+      # cache can be pruned to `max_n - n` and `max_size - size` before adding
+      # an object. Right now we prune after adding the object, so the cache
+      # can temporarily grow past the limits. The reason we don't do this now
+      # is because it is expensive to find the size of the serialized object
+      # before adding it.
+
+      private$log(paste0('prune'))
+      self$is_destroyed(throw = TRUE)
+
+      current_time <- Sys.time()
+
+      filenames <- dir(private$dir, "\\.rds$", full.names = TRUE)
+      info <- file.info(filenames)
+      info <- info[info$isdir == FALSE, ]
+      info$name <- rownames(info)
+      rownames(info) <- NULL
+      # Files could be removed between the dir() and file.info() calls. The
+      # entire row for such files will have NA values. Remove those rows.
+      info <- info[!is.na(info$size), ]
+
+      # 1. Remove any files where the age exceeds max age.
+      if (is.finite(private$max_age)) {
+        timediff <- as.numeric(current_time - info$mtime, units = "secs")
+        rm_idx <- timediff > private$max_age
+        if (any(rm_idx)) {
+          private$log(paste0("prune max_age: Removing ", paste(info$name[rm_idx], collapse = ", ")))
+          file.remove(info$name[rm_idx])
+          info <- info[!rm_idx, ]
+        }
+      }
+
+      # Sort objects by priority. The sorting is done in a function which can be
+      # called multiple times but only does the work the first time.
+      info_is_sorted <- FALSE
+      ensure_info_is_sorted <- function() {
+        if (info_is_sorted) return()
+
+        info <<- info[order(info$mtime, decreasing = TRUE), ]
+        info_is_sorted <<- TRUE
+      }
+
+      # 2. Remove files if there are too many.
+      if (is.finite(private$max_n) && nrow(info) > private$max_n) {
+        ensure_info_is_sorted()
+        rm_idx <- seq_len(nrow(info)) > private$max_n
+        private$log(paste0("prune max_n: Removing ", paste(info$name[rm_idx], collapse = ", ")))
+        rm_success <- file.remove(info$name[rm_idx])
+        info <- info[!rm_success, ]
+      }
+
+      # 3. Remove files if cache is too large.
+      if (is.finite(private$max_size) && sum(info$size) > private$max_size) {
+        ensure_info_is_sorted()
+        cum_size <- cumsum(info$size)
+        rm_idx <- cum_size > private$max_size
+        private$log(paste0("prune max_size: Removing ", paste(info$name[rm_idx], collapse = ", ")))
+        rm_success <- file.remove(info$name[rm_idx])
+        info <- info[!rm_success, ]
+      }
+
+      private$prune_last_time <- as.numeric(current_time)
+
+      invisible(self)
+    },
+
+    size = function() {
+      self$is_destroyed(throw = TRUE)
+      length(dir(private$dir, "\\.rds$"))
+    },
+
+    destroy = function() {
+      if (self$is_destroyed()) {
+        return(invisible(self))
+      }
+
+      private$log(paste0("destroy: Removing ", private$dir))
+      # First create a sentinel file so that other processes sharing this
+      # cache know that the cache is to be destroyed. This is needed because
+      # the recursive unlink is not atomic: another process can add a file to
+      # the directory after unlink starts removing files but before it removes
+      # the directory, and when that happens, the directory removal will fail.
+      file.create(file.path(private$dir, "__destroyed__"))
+      # Remove all the .rds files. This will not remove the setinel file.
+      file.remove(dir(private$dir, "\\.rds$", full.names = TRUE))
+      # Next remove dir recursively, including sentinel file.
+      unlink(private$dir, recursive = TRUE)
+      private$destroyed <- TRUE
+      invisible(self)
+    },
+
+    is_destroyed = function(throw = FALSE) {
+      if (!dirExists(private$dir) ||
+          file.exists(file.path(private$dir, "__destroyed__")))
+      {
+        # It's possible for another process to destroy a shared cache directory
+        private$destroyed <- TRUE
+      }
+
+      if (throw) {
+        if (private$destroyed) {
+          stop("Attempted to use cache which has been destroyed:\n  ", private$dir)
+        }
+
+      } else {
+        private$destroyed
+      }
+    },
+
+    finalize = function() {
+      if (private$destroy_on_finalize) {
+        self$destroy()
+      }
+    }
+  ),
+
+  private = list(
+    dir = NULL,
+    max_age = NULL,
+    max_size = NULL,
+    max_n = NULL,
+    evict = NULL,
+    destroy_on_finalize = NULL,
+    destroyed = FALSE,
+    missing = NULL,
+    exec_missing = FALSE,
+    logfile = NULL,
+
+    prune_throttle_counter = 0,
+    prune_last_time = NULL,
+
+    key_to_filename = function(key) {
+      validate_key(key)
+      # Additional validation. This 80-char limit is arbitrary, and is
+      # intended to avoid hitting a filename length limit on Windows.
+      if (nchar(key) > 80) {
+        stop("Invalid key: key must have fewer than 80 characters.")
+      }
+      file.path(private$dir, paste0(key, ".rds"))
+    },
+
+    # A wrapper for prune() that throttles it, because prune() can be
+    # expensive due to filesystem operations. This function will prune only
+    # once every 20 times it is called, or if it has been more than 5 seconds
+    # since the last time the cache was actually pruned, whichever is first.
+    # In the future, the behavior may be customizable.
+    prune_throttled = function() {
+      # Count the number of times prune() has been called.
+      private$prune_throttle_counter <- private$prune_throttle_counter + 1
+
+      if (private$prune_throttle_counter > 20 ||
+          private$prune_last_time - as.numeric(Sys.time()) > 5)
+      {
+        self$prune()
+        private$prune_throttle_counter <- 0
+      }
+    },
+
+    # Prunes a single object if it exceeds max_age. If the object does not
+    # exceed max_age, or if the object doesn't exist, do nothing.
+    maybe_prune_single = function(key) {
+      obj <- private$cache[[key]]
+      if (is.null(obj)) return()
+
+      timediff <- as.numeric(Sys.time()) - obj$mtime
+      if (timediff > private$max_age) {
+        private$log(paste0("pruning single object exceeding max_age: Removing ", key))
+        rm(list = key, envir = private$cache)
+      }
+    },
+
+    log = function(text) {
+      if (is.null(private$logfile)) return()
+
+      text <- paste0(format(Sys.time(), "[%Y-%m-%d %H:%M:%OS3] DiskCache "), text)
+      writeLines(text, private$logfile)
+    }
+  )
+)

R/cache-memory.R

@@ -0,0 +1,366 @@
+#' Create a memory cache object
+#'
+#' A memory cache object is a key-value store that saves the values in an
+#' environment. Objects can be stored and retrieved using the \code{get()} and
+#' \code{set()} methods. Objects are automatically pruned from the cache
+#' according to the parameters \code{max_size}, \code{max_age}, \code{max_n},
+#' and \code{evict}.
+#'
+#' In a \code{MemoryCache}, R objects are stored directly in the cache; they are
+#' not \emph{not} serialized before being stored in the cache. This contrasts
+#' with other cache types, like \code{\link{diskCache}}, where objects are
+#' serialized, and the serialized object is cached. This can result in some
+#' differences of behavior. For example, as long as an object is stored in a
+#' MemoryCache, it will not be garbage collected.
+#'
+#'
+#' @section Missing keys:
+#'   The \code{missing} and \code{exec_missing} parameters controls what happens
+#'   when \code{get()} is called with a key that is not in the cache (a cache
+#'   miss). The default behavior is to return a \code{\link{key_missing}}
+#'   object. This is a \emph{sentinel value} that indicates that the key was not
+#'   present in the cache. You can test if the returned value represents a
+#'   missing key by using the \code{\link{is.key_missing}} function. You can
+#'   also have \code{get()} return a different sentinel value, like \code{NULL}.
+#'   If you want to throw an error on a cache miss, you can do so by providing a
+#'   function for \code{missing} that takes one argument, the key, and also use
+#'   \code{exec_missing=TRUE}.
+#'
+#'   When the cache is created, you can supply a value for \code{missing}, which
+#'   sets the default value to be returned for missing values. It can also be
+#'   overridden when \code{get()} is called, by supplying a \code{missing}
+#'   argument. For example, if you use \code{cache$get("mykey", missing =
+#'   NULL)}, it will return \code{NULL} if the key is not in the cache.
+#'
+#'   If your cache is configured so that \code{get()} returns a sentinel value
+#'   to represent a cache miss, then \code{set} will also not allow you to store
+#'   the sentinel value in the cache. It will throw an error if you attempt to
+#'   do so.
+#'
+#'   Instead of returning the same sentinel value each time there is cache miss,
+#'   the cache can execute a function each time \code{get()} encounters missing
+#'   key. If the function returns a value, then \code{get()} will in turn return
+#'   that value. However, a more common use is for the function to throw an
+#'   error. If an error is thrown, then \code{get()} will not return a value.
+#'
+#'   To do this, pass a one-argument function to \code{missing}, and use
+#'   \code{exec_missing=TRUE}. For example, if you want to throw an error that
+#'   prints the missing key, you could do this:
+#'
+#'   \preformatted{
+#'   diskCache(
+#'     missing = function(key) {
+#'       stop("Attempted to get missing key: ", key)
+#'     },
+#'     exec_missing = TRUE
+#'   )
+#'   }
+#'
+#'   If you use this, the code that calls \code{get()} should be wrapped with
+#'   \code{\link{tryCatch}()} to gracefully handle missing keys.
+#'
+#' @section Cache pruning:
+#'
+#'   Cache pruning occurs when \code{set()} is called, or it can be invoked
+#'   manually by calling \code{prune()}.
+#'
+#'   When a pruning occurs, if there are any objects that are older than
+#'   \code{max_age}, they will be removed.
+#'
+#'   The \code{max_size} and \code{max_n} parameters are applied to the cache as
+#'   a whole, in contrast to \code{max_age}, which is applied to each object
+#'   individually.
+#'
+#'   If the number of objects in the cache exceeds \code{max_n}, then objects
+#'   will be removed from the cache according to the eviction policy, which is
+#'   set with the \code{evict} parameter. Objects will be removed so that the
+#'   number of items is \code{max_n}.
+#'
+#'   If the size of the objects in the cache exceeds \code{max_size}, then
+#'   objects will be removed from the cache. Objects will be removed from the
+#'   cache so that the total size remains under \code{max_size}. Note that the
+#'   size is calculated using the size of the files, not the size of disk space
+#'   used by the files -- these two values can differ because of files are
+#'   stored in blocks on disk. For example, if the block size is 4096 bytes,
+#'   then a file that is one byte in size will take 4096 bytes on disk.
+#'
+#'   Another time that objects can be removed from the cache is when
+#'   \code{get()} is called. If the target object is older than \code{max_age},
+#'   it will be removed and the cache will report it as a missing value.
+#'
+#' @section Eviction policies:
+#'
+#' If \code{max_n} or \code{max_size} are used, then objects will be removed
+#' from the cache according to an eviction policy. The available eviction
+#' policies are:
+#'
+#'   \describe{
+#'     \item{\code{"lru"}}{
+#'       Least Recently Used. The least recently used objects will be removed.
+#'       This uses the filesystem's atime property. Some filesystems do not
+#'       support atime, or have a very low atime resolution. The DiskCache will
+#'       check for atime support, and if the filesystem does not support atime,
+#'       a warning will be issued and the "fifo" policy will be used instead.
+#'     }
+#'     \item{\code{"fifo"}}{
+#'       First-in-first-out. The oldest objects will be removed.
+#'     }
+#'   }
+#'
+#' @section Methods:
+#'
+#'  A disk cache object has the following methods:
+#'
+#'   \describe{
+#'     \item{\code{get(key, missing, exec_missing)}}{
+#'       Returns the value associated with \code{key}. If the key is not in the
+#'       cache, then it returns the value specified by \code{missing} or,
+#'       \code{missing} is a function and \code{exec_missing=TRUE}, then
+#'       executes \code{missing}. The function can throw an error or return the
+#'       value. If either of these parameters are specified here, then they
+#'       will override the defaults that were set when the DiskCache object was
+#'       created. See section Missing Keys for more information.
+#'     }
+#'     \item{\code{set(key, value)}}{
+#'       Stores the \code{key}-\code{value} pair in the cache.
+#'     }
+#'     \item{\code{exists(key)}}{
+#'       Returns \code{TRUE} if the cache contains the key, otherwise
+#'       \code{FALSE}.
+#'     }
+#'     \item{\code{size()}}{
+#'       Returns the number of items currently in the cache.
+#'     }
+#'     \item{\code{keys()}}{
+#'       Returns a character vector of all keys currently in the cache.
+#'     }
+#'     \item{\code{reset()}}{
+#'       Clears all objects from the cache.
+#'     }
+#'     \item{\code{destroy()}}{
+#'       Clears all objects in the cache, and removes the cache directory from
+#'       disk.
+#'     }
+#'     \item{\code{prune()}}{
+#'       Prunes the cache, using the parameters specified by \code{max_size},
+#'       \code{max_age}, \code{max_n}, and \code{evict}.
+#'     }
+#'   }
+#'
+#' @inheritParams diskCache
+#'
+#' @export
+memoryCache <- function(
+  max_size = 10 * 1024 ^ 2,
+  max_age = Inf,
+  max_n = Inf,
+  evict = c("lru", "fifo"),
+  missing = key_missing(),
+  exec_missing = FALSE,
+  logfile = NULL)
+{
+  MemoryCache$new(max_size, max_age, max_n, evict, missing, exec_missing, logfile)
+}
+
+MemoryCache <- R6Class("MemoryCache",
+  public = list(
+    initialize = function(
+      max_size = 10 * 1024 ^ 2,
+      max_age = Inf,
+      max_n = Inf,
+      evict = c("lru", "fifo"),
+      missing = key_missing(),
+      exec_missing = FALSE,
+      logfile = NULL)
+    {
+      if (exec_missing && (!is.function(missing) || length(formals(missing)) == 0)) {
+        stop("When `exec_missing` is true, `missing` must be a function that takes one argument.")
+      }
+      if (!is.numeric(max_size)) stop("max_size must be a number. Use `Inf` for no limit.")
+      if (!is.numeric(max_age))  stop("max_age must be a number. Use `Inf` for no limit.")
+      if (!is.numeric(max_n))    stop("max_n must be a number. Use `Inf` for no limit.")
+      private$cache        <- new.env(parent = emptyenv())
+      private$max_size     <- max_size
+      private$max_age      <- max_age
+      private$max_n        <- max_n
+      private$evict        <- match.arg(evict)
+      private$missing      <- missing
+      private$exec_missing <- exec_missing
+      private$logfile      <- logfile
+    },
+
+    get = function(key, missing = private$missing, exec_missing = private$exec_missing) {
+      private$log(paste0('get: key "', key, '"'))
+      validate_key(key)
+
+      private$maybe_prune_single(key)
+
+      if (!self$exists(key)) {
+        private$log(paste0('get: key "', key, '" is missing'))
+        if (exec_missing) {
+          if (!is.function(missing) || length(formals(missing)) == 0) {
+            stop("When `exec_missing` is true, `missing` must be a function that takes one argument.")
+          }
+          return(missing(key))
+        } else {
+          return(missing)
+        }
+      }
+
+      private$log(paste0('get: key "', key, '" found'))
+      value <- private$cache[[key]]$value
+      value
+    },
+
+    set = function(key, value) {
+      private$log(paste0('set: key "', key, '"'))
+      validate_key(key)
+
+      time <- as.numeric(Sys.time())
+
+      # Only record size if we're actually using max_size for pruning.
+      if (is.finite(private$max_size)) {
+        # Reported size is rough! See ?object.size.
+        size <- as.numeric(object.size(value))
+      } else {
+        size <- NULL
+      }
+
+      private$cache[[key]] <- list(
+        key = key,
+        value = value,
+        size = size,
+        mtime = time,
+        atime = time
+      )
+      self$prune()
+      invisible(self)
+    },
+
+    exists = function(key) {
+      validate_key(key)
+      # Faster than `exists(key, envir = private$cache, inherits = FALSE)
+      !is.null(private$cache[[key]])
+    },
+
+    keys = function() {
+      ls(private$cache, sorted = FALSE)  # Faster with sorted=FALSE
+    },
+
+    remove = function(key) {
+      private$log(paste0('remove: key "', key, '"'))
+      validate_key(key)
+      rm(list = key, envir = private$cache)
+      invisible(self)
+    },
+
+    reset = function() {
+      private$log(paste0('reset'))
+      rm(list = self$keys(), envir = private$cache)
+      invisible(self)
+    },
+
+    prune = function() {
+      private$log(paste0('prune'))
+      info <- private$object_info()
+
+      # 1. Remove any objects where the age exceeds max age.
+      if (is.finite(private$max_age)) {
+        time <- as.numeric(Sys.time())
+        timediff <- time - info$mtime
+        rm_idx <- timediff > private$max_age
+        if (any(rm_idx)) {
+          private$log(paste0("prune max_age: Removing ", paste(info$key[rm_idx], collapse = ", ")))
+          rm(list = info$key[rm_idx], envir = private$cache)
+          info <- info[!rm_idx, ]
+        }
+      }
+
+      # Sort objects by priority, according to eviction policy. The sorting is
+      # done in a function which can be called multiple times but only does
+      # the work the first time.
+      info_is_sorted <- FALSE
+      ensure_info_is_sorted <- function() {
+        if (info_is_sorted) return()
+
+        if (private$evict == "lru") {
+          info <<- info[order(info$atime, decreasing = TRUE), ]
+        } else if (private$evict == "fifo") {
+          info <<- info[order(info$mtime, decreasing = TRUE), ]
+        } else {
+          stop('Unknown eviction policy "', private$evict, '"')
+        }
+        info_is_sorted <<- TRUE
+      }
+
+      # 2. Remove objects if there are too many.
+      if (is.finite(private$max_n) && nrow(info) > private$max_n) {
+        ensure_info_is_sorted()
+        rm_idx <- seq_len(nrow(info)) > private$max_n
+        private$log(paste0("prune max_n: Removing ", paste(info$key[rm_idx], collapse = ", ")))
+        rm(list = info$key[rm_idx], envir = private$cache)
+        info <- info[!rm_idx, ]
+      }
+
+      # 3. Remove objects if cache is too large.
+      if (is.finite(private$max_size) && sum(info$size) > private$max_size) {
+        ensure_info_is_sorted()
+        cum_size <- cumsum(info$size)
+        rm_idx <- cum_size > private$max_size
+        private$log(paste0("prune max_size: Removing ", paste(info$key[rm_idx], collapse = ", ")))
+        rm(list = info$key[rm_idx], envir = private$cache)
+        info <- info[!rm_idx, ]
+      }
+
+      invisible(self)
+    },
+
+    size = function() {
+      length(self$keys())
+    }
+  ),
+
+  private = list(
+    cache = NULL,
+    max_age = NULL,
+    max_size = NULL,
+    max_n = NULL,
+    evict = NULL,
+    missing = NULL,
+    exec_missing = NULL,
+    logfile = NULL,
+
+    # Prunes a single object if it exceeds max_age. If the object does not
+    # exceed max_age, or if the object doesn't exist, do nothing.
+    maybe_prune_single = function(key) {
+      if (!is.finite(private$max_age)) return()
+
+      obj <- private$cache[[key]]
+      if (is.null(obj)) return()
+
+      timediff <- as.numeric(Sys.time()) - obj$mtime
+      if (timediff > private$max_age) {
+        private$log(paste0("pruning single object exceeding max_age: Removing ", key))
+        rm(list = key, envir = private$cache)
+      }
+    },
+
+    object_info = function() {
+      keys <- ls(private$cache, sorted = FALSE)
+      data.frame(
+        key   = keys,
+        size  = vapply(keys, function(key) private$cache[[key]]$size,  0),
+        mtime = vapply(keys, function(key) private$cache[[key]]$mtime, 0),
+        atime = vapply(keys, function(key) private$cache[[key]]$atime, 0),
+        stringsAsFactors = FALSE
+      )
+    },
+
+    log = function(text) {
+      if (is.null(private$logfile)) return()
+
+      text <- paste0(format(Sys.time(), "[%Y-%m-%d %H:%M:%OS3] MemoryCache "), text)
+      writeLines(text, private$logfile)
+    }
+  )
+)

R/cache-utils.R

@@ -0,0 +1,33 @@
+#' A Key Missing object
+#'
+#' A \code{key_missing} object represents a cache miss.
+#'
+#' @param x An object to test.
+#'
+#' @seealso \code{\link{diskCache}}, \code{\link{memoryCache}}.
+#'
+#' @export
+key_missing <- function() {
+  structure(list(), class = "key_missing")
+}
+
+#' @rdname key_missing
+#' @export
+is.key_missing <- function(x) {
+  inherits(x, "key_missing")
+}
+
+#' @export
+print.key_missing <- function(x, ...) {
+  cat("<Key Missing>\n")
+}
+
+
+validate_key <- function(key) {
+  if (!is.character(key) || length(key) != 1 || nchar(key) == 0) {
+    stop("Invalid key: key must be single non-empty string.")
+  }
+  if (grepl("[^a-z0-9]", key)) {
+    stop("Invalid key: ", key, ". Only lowercase letters and numbers are allowed.")
+  }
+}

R/conditions.R

@@ -76,7 +76,7 @@ getCallNames <- function(calls) {
 }
 
 getLocs <- function(calls) {
-  sapply(calls, function(call) {
+  vapply(calls, function(call) {
     srcref <- attr(call, "srcref", exact = TRUE)
     if (!is.null(srcref)) {
       srcfile <- attr(srcref, "srcfile", exact = TRUE)
@@ -86,7 +86,24 @@ getLocs <- function(calls) {
       }
     }
     return("")
-  })
+  }, character(1))
+}
+
+getCallCategories <- function(calls) {
+  vapply(calls, function(call) {
+    srcref <- attr(call, "srcref", exact = TRUE)
+    if (!is.null(srcref)) {
+      srcfile <- attr(srcref, "srcfile", exact = TRUE)
+      if (!is.null(srcfile)) {
+        if (!is.null(srcfile$original)) {
+          return("pkg")
+        } else {
+          return("user")
+        }
+      }
+    }
+    return("")
+  }, character(1))
 }
 
 #' @details \code{captureStackTraces} runs the given \code{expr} and if any
@@ -105,17 +122,93 @@ getLocs <- function(calls) {
 #' @rdname stacktrace
 #' @export
 captureStackTraces <- function(expr) {
-  withCallingHandlers(expr,
-    error = function(e) {
-      if (is.null(attr(e, "stack.trace", exact = TRUE))) {
-        calls <- sys.calls()
-        attr(e, "stack.trace") <- calls
-        stop(e)
-      }
-    }
+  promises::with_promise_domain(createStackTracePromiseDomain(),
+    expr
   )
 }
 
+#' @include globals.R
+.globals$deepStack <- NULL
+
+createStackTracePromiseDomain <- function() {
+  # These are actually stateless, we wouldn't have to create a new one each time
+  # if we didn't want to. They're pretty cheap though.
+  
+  d <- promises::new_promise_domain(
+    wrapOnFulfilled = function(onFulfilled) {
+      force(onFulfilled)
+      # Subscription time
+      if (deepStacksEnabled()) {
+        currentStack <- sys.calls()
+        currentParents <- sys.parents()
+        attr(currentStack, "parents") <- currentParents
+        currentDeepStack <- .globals$deepStack
+      }
+      function(...) {
+        # Fulfill time
+        if (deepStacksEnabled()) {
+          origDeepStack <- .globals$deepStack
+          .globals$deepStack <- c(currentDeepStack, list(currentStack))
+          on.exit(.globals$deepStack <- origDeepStack, add = TRUE)
+        }
+
+        withCallingHandlers(
+          onFulfilled(...),
+          error = doCaptureStack
+        )
+      }
+    },
+    wrapOnRejected = function(onRejected) {
+      force(onRejected)
+      # Subscription time
+      if (deepStacksEnabled()) {
+        currentStack <- sys.calls()
+        currentParents <- sys.parents()
+        attr(currentStack, "parents") <- currentParents
+        currentDeepStack <- .globals$deepStack
+      }
+      function(...) {
+        # Fulfill time
+        if (deepStacksEnabled()) {
+          origDeepStack <- .globals$deepStack
+          .globals$deepStack <- c(currentDeepStack, list(currentStack))
+          on.exit(.globals$deepStack <- origDeepStack, add = TRUE)
+        }
+
+        withCallingHandlers(
+          onRejected(...),
+          error = doCaptureStack
+        )
+      }
+    },
+    wrapSync = function(expr) {
+      withCallingHandlers(expr,
+        error = doCaptureStack
+      )
+    },
+    onError = doCaptureStack
+  )
+}
+
+deepStacksEnabled <- function() {
+  getOption("shiny.deepstacktrace", TRUE)
+}
+
+doCaptureStack <- function(e) {
+  if (is.null(attr(e, "stack.trace", exact = TRUE))) {
+    calls <- sys.calls()
+    parents <- sys.parents()
+    attr(calls, "parents") <- parents
+    attr(e, "stack.trace") <- calls
+  }
+  if (deepStacksEnabled()) {
+    if (is.null(attr(e, "deep.stack.trace", exact = TRUE)) && !is.null(.globals$deepStack)) {
+      attr(e, "deep.stack.trace") <- .globals$deepStack
+    }
+  }
+  stop(e)
+}
+
 #' @details \code{withLogErrors} captures stack traces and logs errors that
 #'   occur in \code{expr}, but does allow errors to propagate beyond this point
 #'   (i.e. it doesn't catch the error). The same caveats that apply to
@@ -128,7 +221,22 @@ withLogErrors <- function(expr,
   offset = getOption("shiny.stacktraceoffset", TRUE)) {
 
   withCallingHandlers(
-    captureStackTraces(expr),
+    {
+      result <- captureStackTraces(expr)
+
+      # Handle expr being an async operation
+      if (promises::is.promise(result)) {
+        result <- promises::catch(result, function(cond) {
+          # Don't print shiny.silent.error (i.e. validation errors)
+          if (inherits(cond, "shiny.silent.error")) return()
+          if (isTRUE(getOption("show.error.messages"))) {
+            printError(cond, full = full, offset = offset)
+          }
+        })
+      }
+
+      result
+    },
     error = function(cond) {
       # Don't print shiny.silent.error (i.e. validation errors)
       if (inherits(cond, "shiny.silent.error")) return()
@@ -158,11 +266,11 @@ withLogErrors <- function(expr,
 printError <- function(cond,
   full = getOption("shiny.fullstacktrace", FALSE),
   offset = getOption("shiny.stacktraceoffset", TRUE)) {
-
-  warning(call. = FALSE, immediate. = TRUE, sprintf("Error in %s: %s",
+  
+  warning(call. = FALSE, immediate. = TRUE, sprintf("Error in %s: %s", 
     getCallNames(list(conditionCall(cond))), conditionMessage(cond)))
+  
   printStackTrace(cond, full = full, offset = offset)
-  invisible()
 }
 
 #' @rdname stacktrace
@@ -171,24 +279,85 @@ printStackTrace <- function(cond,
   full = getOption("shiny.fullstacktrace", FALSE),
   offset = getOption("shiny.stacktraceoffset", TRUE)) {
 
-  stackTrace <- attr(cond, "stack.trace", exact = TRUE)
-  tryCatch(
-    if (!is.null(stackTrace)) {
-      message(paste0(
-        "Stack trace (innermost first):\n",
-        paste0(collapse = "\n",
-          formatStackTrace(stackTrace, full = full, offset = offset,
-            indent = "    ")
-        )
-      ))
-    } else {
-      message("No stack trace available")
-    },
-
-    error = function(cond) {
-      warning("Failed to write stack trace: ", cond)
-    }
+  should_drop <- !full
+  should_strip <- !full
+  should_prune <- !full
+  
+  stackTraceCalls <- c(
+    attr(cond, "deep.stack.trace", exact = TRUE),
+    list(attr(cond, "stack.trace", exact = TRUE))
   )
+  
+  stackTraceParents <- lapply(stackTraceCalls, attr, which = "parents", exact = TRUE)
+  stackTraceCallNames <- lapply(stackTraceCalls, getCallNames)
+  stackTraceCalls <- lapply(stackTraceCalls, offsetSrcrefs, offset = offset)
+  
+  # Use dropTrivialFrames logic to remove trailing bits (.handleSimpleError, h)
+  if (should_drop) {
+    # toKeep is a list of logical vectors, of which elements (stack frames) to keep
+    toKeep <- lapply(stackTraceCallNames, dropTrivialFrames)
+    # We apply the list of logical vector indices to each data structure
+    stackTraceCalls <- mapply(stackTraceCalls, FUN = `[`, toKeep, SIMPLIFY = FALSE)
+    stackTraceCallNames <- mapply(stackTraceCallNames, FUN = `[`, toKeep, SIMPLIFY = FALSE)
+    stackTraceParents <- mapply(stackTraceParents, FUN = `[`, toKeep, SIMPLIFY = FALSE)
+  }
+  
+  delayedAssign("all_true", {
+    # List of logical vectors that are all TRUE, the same shape as
+    # stackTraceCallNames. Delay the evaluation so we don't create it unless
+    # we need it, but if we need it twice then we don't pay to create it twice.
+    lapply(stackTraceCallNames, function(st) {
+      rep_len(TRUE, length(st))
+    })
+  })
+  
+  # stripStackTraces and lapply(stackTraceParents, pruneStackTrace) return lists
+  # of logical vectors. Use mapply(FUN = `&`) to boolean-and each pair of the
+  # logical vectors.
+  toShow <- mapply(
+    if (should_strip) stripStackTraces(stackTraceCallNames) else all_true,
+    if (should_prune) lapply(stackTraceParents, pruneStackTrace) else all_true,
+    FUN = `&`,
+    SIMPLIFY = FALSE
+  )
+  
+  dfs <- mapply(seq_along(stackTraceCalls), rev(stackTraceCalls), rev(stackTraceCallNames), rev(toShow), FUN = function(i, calls, nms, index) {
+    st <- data.frame(
+      num = rev(which(index)),
+      call = rev(nms[index]),
+      loc = rev(getLocs(calls[index])),
+      category = rev(getCallCategories(calls[index])),
+      stringsAsFactors = FALSE
+    )
+    
+    if (i != 1) {
+      message("From earlier call:")
+    }
+
+    if (nrow(st) == 0) {
+      message("  [No stack trace available]")
+    } else {
+      width <- floor(log10(max(st$num))) + 1
+      formatted <- paste0(
+        "  ",
+        formatC(st$num, width = width),
+        ": ",
+        mapply(paste0(st$call, st$loc), st$category, FUN = function(name, category) {
+          if (category == "pkg")
+            crayon::silver(name)
+          else if (category == "user")
+            crayon::blue$bold(name)
+          else
+            crayon::white(name)
+        }),
+        "\n"
+      )
+      cat(file = stderr(), formatted, sep = "")
+    }
+
+    st
+  }, SIMPLIFY = FALSE)
+  
   invisible()
 }
 
@@ -196,12 +365,17 @@ printStackTrace <- function(cond,
 #'   from \code{conditionStackTrace(cond)}) and returns a data frame with one
 #'   row for each stack frame and the columns \code{num} (stack frame number),
 #'   \code{call} (a function name or similar), and \code{loc} (source file path
-#'   and line number, if available).
+#'   and line number, if available). It was deprecated after shiny 1.0.5 because
+#'   it doesn't support deep stack traces.
 #' @rdname stacktrace
 #' @export
 extractStackTrace <- function(calls,
   full = getOption("shiny.fullstacktrace", FALSE),
   offset = getOption("shiny.stacktraceoffset", TRUE)) {
+  
+  shinyDeprecated(NULL,
+    "extractStackTrace is deprecated. Please contact the Shiny team if you were using this functionality.",
+    version = "1.0.5")
 
   srcrefs <- getSrcRefs(calls)
   if (offset) {
@@ -241,7 +415,11 @@ extractStackTrace <- function(calls,
     score <- rep.int(0, length(callnames))
     score[callnames == "..stacktraceoff.."] <- -1
     score[callnames == "..stacktraceon.."] <- 1
-    toShow <- (1 + cumsum(score)) > 0 & !(callnames %in% c("..stacktraceon..", "..stacktraceoff.."))
+    toShow <- (1 + cumsum(score)) > 0 & !(callnames %in% c("..stacktraceon..", "..stacktraceoff..", "..stacktracefloor.."))
+
+    # doTryCatch, tryCatchOne, and tryCatchList are not informative--they're
+    # just internals for tryCatch
+    toShow <- toShow & !(callnames %in% c("doTryCatch", "tryCatchOne", "tryCatchList"))
   }
   calls <- calls[toShow]
 
@@ -253,12 +431,115 @@ extractStackTrace <- function(calls,
     num = index,
     call = getCallNames(calls),
     loc = getLocs(calls),
+    category = getCallCategories(calls),
     stringsAsFactors = FALSE
   )
 }
 
+stripStackTraces <- function(stackTraces, values = FALSE) {
+  score <- 1L  # >=1: show, <=0: hide
+  lapply(seq_along(stackTraces), function(i) {
+    res <- stripOneStackTrace(stackTraces[[i]], i != 1, score)
+    score <<- res$score
+    toShow <- as.logical(res$trace)
+    if (values) {
+      as.character(stackTraces[[i]][toShow])
+    } else {
+      as.logical(toShow)
+    }
+  })
+}
+
+stripOneStackTrace <- function(stackTrace, truncateFloor, startingScore) {
+  prefix <- logical(0)
+  if (truncateFloor) {
+    indexOfFloor <- utils::tail(which(stackTrace == "..stacktracefloor.."), 1)
+    if (length(indexOfFloor)) {
+      stackTrace <- stackTrace[(indexOfFloor+1L):length(stackTrace)]
+      prefix <- rep_len(FALSE, indexOfFloor)
+    }
+  }
+  
+  if (length(stackTrace) == 0) {
+    return(list(score = startingScore, character(0)))
+  }
+  
+  score <- rep.int(0L, length(stackTrace))
+  score[stackTrace == "..stacktraceon.."] <- 1L
+  score[stackTrace == "..stacktraceoff.."] <- -1L
+  score <- startingScore + cumsum(score)
+  
+  toShow <- score > 0 & !(stackTrace %in% c("..stacktraceon..", "..stacktraceoff..", "..stacktracefloor.."))
+  
+  
+  list(score = utils::tail(score, 1), trace = c(prefix, toShow))
+}
+
+# Given sys.parents() (which corresponds to sys.calls()), return a logical index
+# that prunes each subtree so that only the final branch remains. The result,
+# when applied to sys.calls(), is a linear list of calls without any "wrapper"
+# functions like tryCatch, try, with, hybrid_chain, etc. While these are often
+# part of the active call stack, they rarely are helpful when trying to identify
+# a broken bit of code.
+pruneStackTrace <- function(parents) {
+  # Detect nodes that are not the last child. This is necessary, but not
+  # sufficient; we also need to drop nodes that are the last child, but one of
+  # their ancestors is not.
+  is_dupe <- duplicated(parents, fromLast = TRUE)
+  
+  # The index of the most recently seen node that was actually kept instead of
+  # dropped.
+  current_node <- 0
+  
+  # Loop over the parent indices. Anything that is not parented by current_node
+  # (a.k.a. last-known-good node), or is a dupe, can be discarded. Anything that
+  # is kept becomes the new current_node.
+  include <- vapply(seq_along(parents), function(i) {
+    if (!is_dupe[[i]] && parents[[i]] == current_node) {
+      current_node <<- i
+      TRUE
+    } else {
+      FALSE
+    }
+  }, FUN.VALUE = logical(1))
+  
+  include
+}
+
+dropTrivialFrames <- function(callnames) {
+  # Remove stop(), .handleSimpleError(), and h() calls from the end of
+  # the calls--they don't add any helpful information. But only remove
+  # the last *contiguous* block of them, and then, only if they are the
+  # last thing in the calls list.
+  hideable <- callnames %in% c(".handleSimpleError", "h", "base$wrapOnFulfilled")
+  # What's the last that *didn't* match stop/.handleSimpleError/h?
+  lastGoodCall <- max(which(!hideable))
+  toRemove <- length(callnames) - lastGoodCall
+  
+  c(
+    rep_len(TRUE, length(callnames) - toRemove),
+    rep_len(FALSE, toRemove)
+  )
+}
+
+offsetSrcrefs <- function(calls, offset = TRUE) {
+  if (offset) {
+    srcrefs <- getSrcRefs(calls)
+
+    # Offset calls vs. srcrefs by 1 to make them more intuitive.
+    # E.g. for "foo [bar.R:10]", line 10 of bar.R will be part of
+    # the definition of foo().
+    srcrefs <- c(utils::tail(srcrefs, -1), list(NULL))
+    
+    calls <- setSrcRefs(calls, srcrefs)
+  }
+  
+  calls
+}
+
 #' @details \code{formatStackTrace} is similar to \code{extractStackTrace}, but
-#'   it returns a preformatted character vector instead of a data frame.
+#'   it returns a preformatted character vector instead of a data frame. It was
+#'   deprecated after shiny 1.0.5 because it doesn't support deep stack traces.
 #' @param indent A string to prefix every line of the stack trace.
 #' @rdname stacktrace
 #' @export
@@ -266,6 +547,10 @@ formatStackTrace <- function(calls, indent = "    ",
   full = getOption("shiny.fullstacktrace", FALSE),
   offset = getOption("shiny.stacktraceoffset", TRUE)) {
 
+  shinyDeprecated(NULL,
+    "extractStackTrace is deprecated. Please contact the Shiny team if you were using this functionality.",
+    version = "1.0.5")
+  
   st <- extractStackTrace(calls, full = full, offset = offset)
   if (nrow(st) == 0) {
     return(character(0))
@@ -276,8 +561,14 @@ formatStackTrace <- function(calls, indent = "    ",
     indent,
     formatC(st$num, width = width),
     ": ",
-    st$call,
-    st$loc
+    mapply(paste0(st$call, st$loc), st$category, FUN = function(name, category) {
+      if (category == "pkg")
+        crayon::silver(name)
+      else if (category == "user")
+        crayon::blue$bold(name)
+      else
+        crayon::white(name)
+    })
   )
 }
 
@@ -332,3 +623,5 @@ conditionStackTrace <- function(cond) {
 #' @rdname stacktrace
 #' @export
 ..stacktraceoff.. <- function(expr) expr
+
+..stacktracefloor.. <- function(expr) expr

R/fileupload.R

@@ -20,6 +20,18 @@
 # form upload, i.e. traditional HTTP POST-based file upload) doesn't work with
 # the websockets package's HTTP server at the moment.
 
+# @description Returns a file's extension, with a leading dot, if one can be
+#   found. A valid extension contains only alphanumeric characters. If there is
+#   no extension, or if it contains non-alphanumeric characters, an empty
+#   string is returned.
+# @param x character vector giving file paths.
+# @return The extension of \code{x}, with a leading dot, if one was found.
+#   Otherwise, an empty character vector.
+maybeGetExtension <- function(x) {
+  ext <- tools::file_ext(x)
+  ifelse(ext == "", ext, paste0(".", ext))
+}
+
 FileUploadOperation <- R6Class(
   'FileUploadOperation',
   portable = FALSE,
@@ -52,8 +64,9 @@ FileUploadOperation <- R6Class(
       .currentFileInfo <<- file
       .pendingFileInfos <<- tail(.pendingFileInfos, -1)
 
-      filename <- file.path(.dir, as.character(length(.files$name)))
-      row <- data.frame(name=file$name, size=file$size, type=file$type,
+      fileBasename <- basename(.currentFileInfo$name)
+      filename <- file.path(.dir, paste0(as.character(length(.files$name)), maybeGetExtension(fileBasename)))
+      row <- data.frame(name=fileBasename, size=file$size, type=file$type,
                         datapath=filename, stringsAsFactors=FALSE)
 
       if (length(.files$name) == 0)
@@ -94,7 +107,7 @@ FileUploadContext <- R6Class(
     },
     createUploadOperation = function(fileInfos) {
       while (TRUE) {
-        id <- paste(as.raw(p_runif(12, min=0, max=0xFF)), collapse='')
+        id <- createUniqueId(12)
         private$ids <- c(private$ids, id)
         dir <- file.path(private$basedir, id)
         if (!dir.create(dir))

R/globals.R

@@ -5,7 +5,7 @@
   # R's lazy-loading package scheme causes the private seed to be cached in the
   # package itself, making our PRNG completely deterministic. This line resets
   # the private seed during load.
-  withPrivateSeed(reinitializeSeed())
+  withPrivateSeed(set.seed(NULL))
 }
 
 .onAttach <- function(libname, pkgname) {

R/graph.R

@@ -97,8 +97,8 @@ renderReactLog <- function(sessionToken = NULL, time = TRUE) {
   .graphAppend(list(action='enter', id=id))
 }
 
-.graphExitContext <- function(id) {
-  .graphAppend(list(action='exit', id=id))
+.graphExitContext <- function(id, domain) {
+  .graphAppend(list(action='exit', id=id), domain = domain)
 }
 
 .graphValueChange <- function(label, value) {

R/history.R

@@ -0,0 +1,95 @@
+
+#' @include reactive-domains.R
+NULL
+
+#' @include reactives.R
+NULL
+
+#' Get the query string / hash component from the URL
+#'
+#' Two user friendly wrappers for getting the query string and the hash
+#' component from the app's URL.
+#'
+#' These can be particularly useful if you want to display different content
+#' depending on the values in the query string / hash (e.g. instead of basing
+#' the conditional on an input or a calculated reactive, you can base it on the
+#' query string). However, note that, if you're changing the query string / hash
+#' programatically from within the server code, you must use
+#' \code{updateQueryString(_yourNewQueryString_, mode = "push")}. The default
+#' \code{mode} for \code{updateQueryString} is \code{"replace"}, which doesn't
+#' raise any events, so any observers or reactives that depend on it will
+#' \emph{not} get triggered. However, if you're changing the query string / hash
+#' directly by typing directly in the browser and hitting enter, you don't have
+#' to worry about this.
+#'
+#' @param session	A Shiny session object.
+#'
+#' @return For \code{getQueryString}, a named list. For example, the query
+#'   string \code{?param1=value1&param2=value2} becomes \code{list(param1 =
+#'   value1, param2 = value2)}. For \code{getUrlHash}, a character vector with
+#'   the hash (including the leading \code{#} symbol).
+#'
+#' @seealso \code{\link{updateQueryString}}
+#'
+#' @examples
+#' ## Only run this example in interactive R sessions
+#' if (interactive()) {
+#'
+#'   ## App 1: getQueryString
+#'   ## Printing the value of the query string
+#'   ## (Use the back and forward buttons to see how the browser
+#'   ## keeps a record of each state)
+#'   shinyApp(
+#'     ui = fluidPage(
+#'       textInput("txt", "Enter new query string"),
+#'       helpText("Format: ?param1=val1&param2=val2"),
+#'       actionButton("go", "Update"),
+#'       hr(),
+#'       verbatimTextOutput("query")
+#'     ),
+#'     server = function(input, output, session) {
+#'       observeEvent(input$go, {
+#'         updateQueryString(input$txt, mode = "push")
+#'       })
+#'       output$query <- renderText({
+#'         query <- getQueryString()
+#'         queryText <- paste(names(query), query,
+#'                        sep = "=", collapse=", ")
+#'         paste("Your query string is:\n", queryText)
+#'       })
+#'     }
+#'   )
+#'
+#'   ## App 2: getUrlHash
+#'   ## Printing the value of the URL hash
+#'   ## (Use the back and forward buttons to see how the browser
+#'   ## keeps a record of each state)
+#'   shinyApp(
+#'     ui = fluidPage(
+#'       textInput("txt", "Enter new hash"),
+#'       helpText("Format: #hash"),
+#'       actionButton("go", "Update"),
+#'       hr(),
+#'       verbatimTextOutput("hash")
+#'     ),
+#'     server = function(input, output, session) {
+#'       observeEvent(input$go, {
+#'         updateQueryString(input$txt, mode = "push")
+#'       })
+#'       output$hash <- renderText({
+#'         hash <- getUrlHash()
+#'         paste("Your hash is:\n", hash)
+#'       })
+#'     }
+#'   )
+#' }
+#' @export
+getQueryString <- function(session = getDefaultReactiveDomain()) {
+  parseQueryString(session$clientData$url_search)
+}
+
+#' @rdname getQueryString
+#' @export
+getUrlHash <- function(session = getDefaultReactiveDomain()) {
+  session$clientData$url_hash
+}

R/html-deps.R

@@ -6,13 +6,18 @@
 #' URL.
 #'
 #' @param dependency A single HTML dependency object, created using
-#'   \code{\link[htmltools]{htmlDependency}}. If the \code{src} value is named, then
-#'   \code{href} and/or \code{file} names must be present.
+#'   \code{\link[htmltools]{htmlDependency}}. If the \code{src} value is named,
+#'   then \code{href} and/or \code{file} names must be present.
+#' @param scrubFile If TRUE (the default), remove \code{src$file} for the
+#'   dependency. This prevents the local file path from being sent to the client
+#'   when dynamic web dependencies are used. If FALSE, don't remove
+#'   \code{src$file}. Setting it to FALSE should be needed only in very unusual
+#'   cases.
 #'
 #' @return A single HTML dependency object that has an \code{href}-named element
 #'   in its \code{src}.
 #' @export
-createWebDependency <- function(dependency) {
+createWebDependency <- function(dependency, scrubFile = TRUE) {
   if (is.null(dependency))
     return(NULL)
 
@@ -25,6 +30,10 @@ createWebDependency <- function(dependency) {
     dependency$src$href <- prefix
   }
 
+  # Don't leak local file path to client
+  if (scrubFile)
+    dependency$src$file <- NULL
+
   return(dependency)
 }
 

R/image-interact.R

@@ -86,6 +86,8 @@ brushedPoints <- function(df, brush, xvar = NULL, yvar = NULL,
   if (use_x) {
     if (is.null(xvar))
       stop("brushedPoints: not able to automatically infer `xvar` from brush")
+    if (!(xvar %in% names(df)))
+      stop("brushedPoints: `xvar` ('", xvar ,"')  not in names of input")
     # Extract data values from the data frame
     x <- asNumber(df[[xvar]])
     keep_rows <- keep_rows & (x >= brush$xmin & x <= brush$xmax)
@@ -93,6 +95,8 @@ brushedPoints <- function(df, brush, xvar = NULL, yvar = NULL,
   if (use_y) {
     if (is.null(yvar))
       stop("brushedPoints: not able to automatically infer `yvar` from brush")
+    if (!(yvar %in% names(df)))
+      stop("brushedPoints: `yvar` ('", yvar ,"') not in names of input")
     y <- asNumber(df[[yvar]])
     keep_rows <- keep_rows & (y >= brush$ymin & y <= brush$ymax)
   }
@@ -118,6 +122,19 @@ brushedPoints <- function(df, brush, xvar = NULL, yvar = NULL,
 #  $ xmax   : num 4.22
 #  $ ymin   : num 13.9
 #  $ ymax   : num 19.8
+#  $ coords_css:List of 4
+#   ..$ xmin: int 260
+#   ..$ xmax: int 298
+#   ..$ ymin: num 112
+#   ..$ ymax: num 205
+#  $ coords_img:List of 4
+#   ..$ xmin: int 325
+#   ..$ xmax: num 372
+#   ..$ ymin: num 140
+#   ..$ ymax: num 257
+#  $ img_css_ratio:List of 2
+#   ..$ x: num 1.25
+#   ..$ y: num 1.25
 #  $ mapping: Named list()
 #  $ domain :List of 4
 #   ..$ left  : num 1.36
@@ -143,6 +160,19 @@ brushedPoints <- function(df, brush, xvar = NULL, yvar = NULL,
 #  $ ymax     : num 20.4
 #  $ panelvar1: int 6
 #  $ panelvar2: int 0
+#  $ coords_css:List of 4
+#   ..$ xmin: int 260
+#   ..$ xmax: int 298
+#   ..$ ymin: num 112
+#   ..$ ymax: num 205
+#  $ coords_img:List of 4
+#   ..$ xmin: int 325
+#   ..$ xmax: num 372
+#   ..$ ymin: num 140
+#   ..$ ymax: num 257
+#  $ img_css_ratio:List of 2
+#   ..$ x: num 1.25
+#   ..$ y: num 1.25
 #  $ mapping  :List of 4
 #   ..$ x        : chr "wt"
 #   ..$ y        : chr "mpg"
@@ -245,18 +275,29 @@ nearPoints <- function(df, coordinfo, xvar = NULL, yvar = NULL,
   if (is.null(yvar))
     stop("nearPoints: not able to automatically infer `yvar` from coordinfo")
 
+  if (!(xvar %in% names(df)))
+    stop("nearPoints: `xvar` ('", xvar ,"')  not in names of input")
+  if (!(yvar %in% names(df)))
+    stop("nearPoints: `yvar` ('", yvar ,"')  not in names of input")
+
   # Extract data values from the data frame
   x <- asNumber(df[[xvar]])
   y <- asNumber(df[[yvar]])
 
-  # Get the pixel coordinates of the point
-  coordPx <- scaleCoords(coordinfo$x, coordinfo$y, coordinfo)
+  # Get the coordinates of the point (in img pixel coordinates)
+  point_img <- coordinfo$coords_img
 
-  # Get pixel coordinates of data points
-  dataPx <- scaleCoords(x, y, coordinfo)
+  # Get coordinates of data points (in img pixel coordinates)
+  data_img <- scaleCoords(x, y, coordinfo)
 
-  # Distances of data points to coordPx
-  dists <- sqrt((dataPx$x - coordPx$x) ^ 2 + (dataPx$y - coordPx$y) ^ 2)
+  # Get x/y distances (in css coordinates)
+  dist_css <- list(
+    x = (data_img$x - point_img$x) / coordinfo$img_css_ratio$x,
+    y = (data_img$y - point_img$y) / coordinfo$img_css_ratio$y
+  )
+
+  # Distances of data points to the target point, in css pixels.
+  dists <- sqrt(dist_css$x^2 + dist_css$y^2)
 
   if (addDist)
     df$dist_ <- dists
@@ -298,50 +339,68 @@ nearPoints <- function(df, coordinfo, xvar = NULL, yvar = NULL,
 # The coordinfo data structure will look something like the examples below.
 # For base graphics, `mapping` is empty, and there are no panelvars:
 # List of 7
-#  $ x      : num 4.37
-#  $ y      : num 12
-#  $ mapping: Named list()
-#  $ domain :List of 4
+#  $ x         : num 4.37
+#  $ y         : num 12
+#  $ coords_css:List of 2
+#   ..$ x: int 286
+#   ..$ y: int 192
+#  $ coords_img:List of 2
+#   ..$ x: num 358
+#   ..$ y: int 240
+#  $ img_css_ratio:List of 2
+#   ..$ x: num 1.25
+#   ..$ y: num 1.25
+#  $ mapping   : Named list()
+#  $ domain    :List of 4
 #   ..$ left  : num 1.36
 #   ..$ right : num 5.58
 #   ..$ bottom: num 9.46
 #   ..$ top   : num 34.8
-#  $ range  :List of 4
+#  $ range     :List of 4
 #   ..$ left  : num 58
 #   ..$ right : num 429
 #   ..$ bottom: num 226
 #   ..$ top   : num 58
-#  $ log    :List of 2
+#  $ log       :List of 2
 #   ..$ x: NULL
 #   ..$ y: NULL
-#  $ .nonce : num 0.343
+#  $ .nonce    : num 0.343
 #
 # For ggplot2, the mapping vars usually will be included, and if faceting is
 # used, they will be listed as panelvars:
 # List of 9
-#  $ x        : num 3.78
-#  $ y        : num 17.1
-#  $ panelvar1: int 6
-#  $ panelvar2: int 0
-#  $ mapping  :List of 4
+#  $ x         : num 3.78
+#  $ y         : num 17.1
+#  $ coords_css:List of 2
+#   ..$ x: int 286
+#   ..$ y: int 192
+#  $ coords_img:List of 2
+#   ..$ x: num 358
+#   ..$ y: int 240
+#  $ img_css_ratio:List of 2
+#   ..$ x: num 1.25
+#   ..$ y: num 1.25
+#  $ panelvar1 : int 6
+#  $ panelvar2 : int 0
+#  $ mapping   :List of 4
 #   ..$ x        : chr "wt"
 #   ..$ y        : chr "mpg"
 #   ..$ panelvar1: chr "cyl"
 #   ..$ panelvar2: chr "am"
-#  $ domain   :List of 4
+#  $ domain    :List of 4
 #   ..$ left  : num 1.32
 #   ..$ right : num 5.62
 #   ..$ bottom: num 9.22
 #   ..$ top   : num 35.1
-#  $ range    :List of 4
+#  $ range     :List of 4
 #   ..$ left  : num 172
 #   ..$ right : num 300
 #   ..$ bottom: num 144
 #   ..$ top   : num 28.5
-#  $ log      :List of 2
+#  $ log       :List of 2
 #   ..$ x: NULL
 #   ..$ y: NULL
-#  $ .nonce   : num 0.603
+#  $ .nonce    : num 0.603
 
 
 

R/imageutils.R

@@ -1,3 +1,33 @@
+startPNG <- function(filename, width, height, res, ...) {
+  # If quartz is available, use png() (which will default to quartz).
+  # Otherwise, if the Cairo package is installed, use CairoPNG().
+  # Finally, if neither quartz nor Cairo, use png().
+  if (capabilities("aqua")) {
+    pngfun <- grDevices::png
+  } else if ((getOption('shiny.usecairo') %OR% TRUE) &&
+      nchar(system.file(package = "Cairo"))) {
+    pngfun <- Cairo::CairoPNG
+  } else {
+    pngfun <- grDevices::png
+  }
+
+  pngfun(filename=filename, width=width, height=height, res=res, ...)
+  # Call plot.new() so that even if no plotting operations are performed at
+  # least we have a blank background. N.B. we need to set the margin to 0
+  # temporarily before plot.new() because when the plot size is small (e.g.
+  # 200x50), we will get an error "figure margin too large", which is triggered
+  # by plot.new() with the default (large) margin. However, this does not
+  # guarantee user's code in func() will not trigger the error -- they may have
+  # to set par(mar = smaller_value) before they draw base graphics.
+  op <- graphics::par(mar = rep(0, 4))
+  tryCatch(
+    graphics::plot.new(),
+    finally = graphics::par(op)
+  )
+
+  grDevices::dev.cur()
+}
+
 #' Run a plotting function and save the output as a PNG
 #'
 #' This function returns the name of the PNG file that it generates. In
@@ -21,42 +51,51 @@
 #' @param width Width in pixels.
 #' @param height Height in pixels.
 #' @param res Resolution in pixels per inch. This value is passed to
-#'   \code{\link{png}}. Note that this affects the resolution of PNG rendering in
+#'   \code{\link[grDevices]{png}}. Note that this affects the resolution of PNG rendering in
 #'   R; it won't change the actual ppi of the browser.
 #' @param ... Arguments to be passed through to \code{\link[grDevices]{png}}.
 #'   These can be used to set the width, height, background color, etc.
 #' @export
 plotPNG <- function(func, filename=tempfile(fileext='.png'),
                     width=400, height=400, res=72, ...) {
-  # If quartz is available, use png() (which will default to quartz).
-  # Otherwise, if the Cairo package is installed, use CairoPNG().
-  # Finally, if neither quartz nor Cairo, use png().
-  if (capabilities("aqua")) {
-    pngfun <- grDevices::png
-  } else if ((getOption('shiny.usecairo') %OR% TRUE) &&
-             nchar(system.file(package = "Cairo"))) {
-    pngfun <- Cairo::CairoPNG
-  } else {
-    pngfun <- grDevices::png
-  }
-
-  pngfun(filename=filename, width=width, height=height, res=res, ...)
-  # Call plot.new() so that even if no plotting operations are performed at
-  # least we have a blank background. N.B. we need to set the margin to 0
-  # temporarily before plot.new() because when the plot size is small (e.g.
-  # 200x50), we will get an error "figure margin too large", which is triggered
-  # by plot.new() with the default (large) margin. However, this does not
-  # guarantee user's code in func() will not trigger the error -- they may have
-  # to set par(mar = smaller_value) before they draw base graphics.
-  op <- graphics::par(mar = rep(0, 4))
-  tryCatch(
-    graphics::plot.new(),
-    finally = graphics::par(op)
-  )
-
-  dv <- grDevices::dev.cur()
+  dv <- startPNG(filename, width, height, res, ...)
   on.exit(grDevices::dev.off(dv), add = TRUE)
   func()
 
   filename
 }
+
+#' @importFrom grDevices dev.set dev.cur
+createGraphicsDevicePromiseDomain <- function(which = dev.cur()) {
+  force(which)
+
+  promises::new_promise_domain(
+    wrapOnFulfilled = function(onFulfilled) {
+      force(onFulfilled)
+      function(...) {
+        old <- dev.cur()
+        dev.set(which)
+        on.exit(dev.set(old))
+
+        onFulfilled(...)
+      }
+    },
+    wrapOnRejected = function(onRejected) {
+      force(onRejected)
+      function(...) {
+        old <- dev.cur()
+        dev.set(which)
+        on.exit(dev.set(old))
+
+        onRejected(...)
+      }
+    },
+    wrapSync = function(expr) {
+      old <- dev.cur()
+      dev.set(which)
+      on.exit(dev.set(old))
+
+      force(expr)
+    }
+  )
+}

R/input-checkboxgroup.R

@@ -6,9 +6,22 @@
 #'
 #' @inheritParams textInput
 #' @param choices List of values to show checkboxes for. If elements of the list
-#'   are named then that name rather than the value is displayed to the user.
+#'   are named then that name rather than the value is displayed to the user. If
+#'   this argument is provided, then \code{choiceNames} and \code{choiceValues}
+#'   must not be provided, and vice-versa. The values should be strings; other
+#'   types (such as logicals and numbers) will be coerced to strings.
 #' @param selected The values that should be initially selected, if any.
 #' @param inline If \code{TRUE}, render the choices inline (i.e. horizontally)
+#' @param choiceNames,choiceValues List of names and values, respectively,
+#'   that are displayed to the user in the app and correspond to the each
+#'   choice (for this reason, \code{choiceNames} and \code{choiceValues}
+#'   must have the same length). If either of these arguments is
+#'   provided, then the other \emph{must} be provided and \code{choices}
+#'   \emph{must not} be provided. The advantage of using both of these over
+#'   a named list for \code{choices} is that \code{choiceNames} allows any
+#'   type of UI object to be passed through (tag objects, icons, HTML code,
+#'   ...), instead of just simple text. See Examples.
+#'
 #' @return A list of HTML elements that can be added to a UI definition.
 #'
 #' @family input elements
@@ -26,26 +39,52 @@
 #'   tableOutput("data")
 #' )
 #'
-#' server <- function(input, output) {
+#' server <- function(input, output, session) {
 #'   output$data <- renderTable({
 #'     mtcars[, c("mpg", input$variable), drop = FALSE]
 #'   }, rownames = TRUE)
 #' }
 #'
 #' shinyApp(ui, server)
+#'
+#' ui <- fluidPage(
+#'   checkboxGroupInput("icons", "Choose icons:",
+#'     choiceNames =
+#'       list(icon("calendar"), icon("bed"),
+#'            icon("cog"), icon("bug")),
+#'     choiceValues =
+#'       list("calendar", "bed", "cog", "bug")
+#'   ),
+#'   textOutput("txt")
+#' )
+#'
+#' server <- function(input, output, session) {
+#'   output$txt <- renderText({
+#'     icons <- paste(input$icons, collapse = ", ")
+#'     paste("You chose", icons)
+#'   })
+#' }
+#'
+#' shinyApp(ui, server)
 #' }
 #' @export
-checkboxGroupInput <- function(inputId, label, choices, selected = NULL,
-  inline = FALSE, width = NULL) {
+checkboxGroupInput <- function(inputId, label, choices = NULL, selected = NULL,
+  inline = FALSE, width = NULL, choiceNames = NULL, choiceValues = NULL) {
+
+  # keep backward compatibility with Shiny < 1.0.1 (see #1649)
+  if (is.null(choices) && is.null(choiceNames) && is.null(choiceValues)) {
+    choices <- character(0)
+  }
+
+  args <- normalizeChoicesArgs(choices, choiceNames, choiceValues)
 
   selected <- restoreInput(id = inputId, default = selected)
 
-  # resolve names
-  choices <- choicesWithNames(choices)
-  if (!is.null(selected))
-    selected <- validateSelected(selected, choices, inputId)
+  # default value if it's not specified
+  if (!is.null(selected)) selected <- as.character(selected)
 
-  options <- generateOptions(inputId, choices, selected, inline)
+  options <- generateOptions(inputId, selected, inline,
+    'checkbox', args$choiceNames, args$choiceValues)
 
   divClass <- "form-group shiny-input-checkboxgroup shiny-input-container"
   if (inline)

R/input-date.R

@@ -10,7 +10,7 @@
 #'   \item \code{yy} Year without century (12)
 #'   \item \code{yyyy} Year with century (2012)
 #'   \item \code{mm} Month number, with leading zero (01-12)
-#'   \item \code{m} Month number, without leading zero (01-12)
+#'   \item \code{m} Month number, without leading zero (1-12)
 #'   \item \code{M} Abbreviated month name
 #'   \item \code{MM} Full month name
 #'   \item \code{dd} Day of month with leading zero
@@ -21,23 +21,33 @@
 #'
 #' @inheritParams textInput
 #' @param value The starting date. Either a Date object, or a string in
-#'   \code{yyyy-mm-dd} format. If NULL (the default), will use the current
-#'   date in the client's time zone.
+#'   \code{yyyy-mm-dd} format. If NULL (the default), will use the current date
+#'   in the client's time zone.
 #' @param min The minimum allowed date. Either a Date object, or a string in
 #'   \code{yyyy-mm-dd} format.
 #' @param max The maximum allowed date. Either a Date object, or a string in
 #'   \code{yyyy-mm-dd} format.
 #' @param format The format of the date to display in the browser. Defaults to
 #'   \code{"yyyy-mm-dd"}.
-#' @param startview The date range shown when the input object is first
-#'   clicked. Can be "month" (the default), "year", or "decade".
+#' @param startview The date range shown when the input object is first clicked.
+#'   Can be "month" (the default), "year", or "decade".
 #' @param weekstart Which day is the start of the week. Should be an integer
 #'   from 0 (Sunday) to 6 (Saturday).
 #' @param language The language used for month and day names. Default is "en".
-#'   Other valid values include "bg", "ca", "cs", "da", "de", "el", "es", "fi",
-#'   "fr", "he", "hr", "hu", "id", "is", "it", "ja", "kr", "lt", "lv", "ms",
-#'   "nb", "nl", "pl", "pt", "pt-BR", "ro", "rs", "rs-latin", "ru", "sk", "sl",
-#'   "sv", "sw", "th", "tr", "uk", "zh-CN", and "zh-TW".
+#'   Other valid values include "ar-tn", "ar", "az", "bg", "bn", "br", "bs",
+#'   "ca", "cs", "cy", "da", "de", "el", "en-AU", "en-CA", "en-GB", "en-IE",
+#'   "en-NZ", "en-ZA", "eo", "es", "et", "eu", "fa", "fi", "fo", "fr-CH", "fr",
+#'   "gl", "he", "hi", "hr", "hu", "hy", "id", "is", "it-CH", "it", "ja", "ka",
+#'   "kh", "kk", "km", "ko", "kr", "lt", "lv", "me", "mk", "mn", "ms", "nl-BE",
+#'   "nl", "no", "oc", "pl", "pt-BR", "pt", "ro", "rs-latin", "rs", "ru", "si",
+#'   "sk", "sl", "sq", "sr-latin", "sr", "sv", "sw", "ta", "tg", "th", "tk",
+#'   "tr", "uk", "uz-cyrl", "uz-latn", "vi", "zh-CN", and "zh-TW".
+#' @param autoclose Whether or not to close the datepicker immediately when a
+#'   date is selected.
+#' @param datesdisabled Which dates should be disabled. Either a Date object, or
+#'   a string in \code{yyyy-mm-dd} format.
+#' @param daysofweekdisabled Days of the week that should be disabled. Should be
+#'   a integer vector with values from 0 (Sunday) to 6 (Saturday).
 #'
 #' @family input elements
 #' @seealso \code{\link{dateRangeInput}}, \code{\link{updateDateInput}}
@@ -60,52 +70,76 @@
 #'
 #'   # Use different language and different first day of week
 #'   dateInput("date5", "Date:",
-#'           language = "de",
+#'           language = "ru",
 #'           weekstart = 1),
 #'
 #'   # Start with decade view instead of default month view
 #'   dateInput("date6", "Date:",
-#'             startview = "decade")
+#'             startview = "decade"),
+#'
+#'   # Disable Mondays and Tuesdays.
+#'   dateInput("date7", "Date:", daysofweekdisabled = c(1,2)),
+#'
+#'   # Disable specific dates.
+#'   dateInput("date8", "Date:", value = "2012-02-29",
+#'             datesdisabled = c("2012-03-01", "2012-03-02"))
 #' )
 #'
 #' shinyApp(ui, server = function(input, output) { })
 #' }
 #' @export
 dateInput <- function(inputId, label, value = NULL, min = NULL, max = NULL,
-  format = "yyyy-mm-dd", startview = "month", weekstart = 0, language = "en",
-  width = NULL) {
+  format = "yyyy-mm-dd", startview = "month", weekstart = 0,
+  language = "en", width = NULL, autoclose = TRUE,
+  datesdisabled = NULL, daysofweekdisabled = NULL) {
 
   # If value is a date object, convert it to a string with yyyy-mm-dd format
   # Same for min and max
   if (inherits(value, "Date"))  value <- format(value, "%Y-%m-%d")
   if (inherits(min,   "Date"))  min   <- format(min,   "%Y-%m-%d")
   if (inherits(max,   "Date"))  max   <- format(max,   "%Y-%m-%d")
+  if (inherits(datesdisabled, "Date")) {
+      datesdisabled <- format(datesdisabled,   "%Y-%m-%d")
+  }
 
   value <- restoreInput(id = inputId, default = value)
 
-  attachDependencies(
-    tags$div(id = inputId,
-      class = "shiny-date-input form-group shiny-input-container",
-      style = if (!is.null(width)) paste0("width: ", validateCssUnit(width), ";"),
+  tags$div(id = inputId,
+    class = "shiny-date-input form-group shiny-input-container",
+    style = if (!is.null(width)) paste0("width: ", validateCssUnit(width), ";"),
 
-      controlLabel(inputId, label),
-      tags$input(type = "text",
-                 # datepicker class necessary for dropdown to display correctly
-                 class = "form-control datepicker",
-                 `data-date-language` = language,
-                 `data-date-weekstart` = weekstart,
-                 `data-date-format` = format,
-                 `data-date-start-view` = startview,
-                 `data-min-date` = min,
-                 `data-max-date` = max,
-                 `data-initial-date` = value
-      )
+    controlLabel(inputId, label),
+    tags$input(type = "text",
+               class = "form-control",
+               `data-date-language` = language,
+               `data-date-week-start` = weekstart,
+               `data-date-format` = format,
+               `data-date-start-view` = startview,
+               `data-min-date` = min,
+               `data-max-date` = max,
+               `data-initial-date` = value,
+               `data-date-autoclose` = if (autoclose) "true" else "false",
+               `data-date-dates-disabled` =
+                   # Ensure NULL is not sent as `{}` but as 'null'
+                   jsonlite::toJSON(datesdisabled, null = 'null'),
+               `data-date-days-of-week-disabled` =
+                   jsonlite::toJSON(daysofweekdisabled, null = 'null')
     ),
     datePickerDependency
   )
 }
 
 datePickerDependency <- htmlDependency(
-  "bootstrap-datepicker", "1.0.2", c(href = "shared/datepicker"),
+  "bootstrap-datepicker",
+  "1.8.0",
+  c(href = "shared/datepicker"),
   script = "js/bootstrap-datepicker.min.js",
-  stylesheet = "css/datepicker.css")
+  stylesheet = "css/bootstrap-datepicker3.min.css",
+  # Need to enable noConflict mode. See #1346.
+  head = "<script>
+(function() {
+  var datepicker = $.fn.datepicker.noConflict();
+  $.fn.bsDatepicker = datepicker;
+})();
+</script>"
+)

R/input-daterange.R

@@ -10,7 +10,7 @@
 #'   \item \code{yy} Year without century (12)
 #'   \item \code{yyyy} Year with century (2012)
 #'   \item \code{mm} Month number, with leading zero (01-12)
-#'   \item \code{m} Month number, without leading zero (01-12)
+#'   \item \code{m} Month number, without leading zero (1-12)
 #'   \item \code{M} Abbreviated month name
 #'   \item \code{MM} Full month name
 #'   \item \code{dd} Day of month with leading zero
@@ -73,7 +73,8 @@
 #' @export
 dateRangeInput <- function(inputId, label, start = NULL, end = NULL,
     min = NULL, max = NULL, format = "yyyy-mm-dd", startview = "month",
-    weekstart = 0, language = "en", separator = " to ", width = NULL) {
+    weekstart = 0, language = "en", separator = " to ", width = NULL,
+    autoclose = TRUE) {
 
   # If start and end are date objects, convert to a string with yyyy-mm-dd format
   # Same for min and max
@@ -98,24 +99,26 @@ dateRangeInput <- function(inputId, label, start = NULL, end = NULL,
           class = "input-sm form-control",
           type = "text",
           `data-date-language` = language,
-          `data-date-weekstart` = weekstart,
+          `data-date-week-start` = weekstart,
           `data-date-format` = format,
           `data-date-start-view` = startview,
           `data-min-date` = min,
           `data-max-date` = max,
-          `data-initial-date` = start
+          `data-initial-date` = start,
+          `data-date-autoclose` = if (autoclose) "true" else "false"
         ),
         span(class = "input-group-addon", separator),
         tags$input(
           class = "input-sm form-control",
           type = "text",
           `data-date-language` = language,
-          `data-date-weekstart` = weekstart,
+          `data-date-week-start` = weekstart,
           `data-date-format` = format,
           `data-date-start-view` = startview,
           `data-min-date` = min,
           `data-max-date` = max,
-          `data-initial-date` = end
+          `data-initial-date` = end,
+          `data-date-autoclose` = if (autoclose) "true" else "false"
         )
       )
     ),

R/input-file.R

@@ -27,6 +27,9 @@
 #'   Internet Explorer 9 and earlier.}
 #' @param accept A character vector of MIME types; gives the browser a hint of
 #'   what kind of files the server is expecting.
+#' @param buttonLabel The label used on the button. Can be text or an HTML tag
+#'   object.
+#' @param placeholder The text to show before a file has been uploaded.
 #'
 #' @examples
 #' ## Only run examples in interactive R sessions
@@ -70,7 +73,7 @@
 #' }
 #' @export
 fileInput <- function(inputId, label, multiple = FALSE, accept = NULL,
-  width = NULL) {
+  width = NULL, buttonLabel = "Browse...", placeholder = "No file selected") {
 
   restoredValue <- restoreInput(id = inputId, default = NULL)
 
@@ -105,12 +108,12 @@ fileInput <- function(inputId, label, multiple = FALSE, accept = NULL,
     div(class = "input-group",
       tags$label(class = "input-group-btn",
         span(class = "btn btn-default btn-file",
-          "Browse...",
+          buttonLabel,
           inputTag
         )
       ),
       tags$input(type = "text", class = "form-control",
-        placeholder = "No file selected", readonly = "readonly"
+        placeholder = placeholder, readonly = "readonly"
       )
     ),
 

R/input-radiobuttons.R

@@ -3,19 +3,30 @@
 #' Create a set of radio buttons used to select an item from a list.
 #'
 #' If you need to represent a "None selected" state, it's possible to default
-#' the radio buttons to have no options selected by using
-#' \code{selected = character(0)}. However, this is not recommended, as it gives
-#' the user no way to return to that state once they've made a selection.
-#' Instead, consider having the first of your choices be \code{c("None selected"
-#' = "")}.
+#' the radio buttons to have no options selected by using \code{selected =
+#' character(0)}. However, this is not recommended, as it gives the user no way
+#' to return to that state once they've made a selection. Instead, consider
+#' having the first of your choices be \code{c("None selected" = "")}.
 #'
 #' @inheritParams textInput
 #' @param choices List of values to select from (if elements of the list are
-#' named then that name rather than the value is displayed to the user)
-#' @param selected The initially selected value (if not specified then
-#' defaults to the first value)
+#'   named then that name rather than the value is displayed to the user). If
+#'   this argument is provided, then \code{choiceNames} and \code{choiceValues}
+#'   must not be provided, and vice-versa. The values should be strings; other
+#'   types (such as logicals and numbers) will be coerced to strings.
+#' @param selected The initially selected value (if not specified then defaults
+#'   to the first value)
 #' @param inline If \code{TRUE}, render the choices inline (i.e. horizontally)
 #' @return A set of radio buttons that can be added to a UI definition.
+#' @param choiceNames,choiceValues List of names and values, respectively, that
+#'   are displayed to the user in the app and correspond to the each choice (for
+#'   this reason, \code{choiceNames} and \code{choiceValues} must have the same
+#'   length). If either of these arguments is provided, then the other
+#'   \emph{must} be provided and \code{choices} \emph{must not} be provided. The
+#'   advantage of using both of these over a named list for \code{choices} is
+#'   that \code{choiceNames} allows any type of UI object to be passed through
+#'   (tag objects, icons, HTML code, ...), instead of just simple text. See
+#'   Examples.
 #'
 #' @family input elements
 #' @seealso \code{\link{updateRadioButtons}}
@@ -47,27 +58,46 @@
 #' }
 #'
 #' shinyApp(ui, server)
+#'
+#' ui <- fluidPage(
+#'   radioButtons("rb", "Choose one:",
+#'                choiceNames = list(
+#'                  icon("calendar"),
+#'                  HTML("<p style='color:red;'>Red Text</p>"),
+#'                  "Normal text"
+#'                ),
+#'                choiceValues = list(
+#'                  "icon", "html", "text"
+#'                )),
+#'   textOutput("txt")
+#' )
+#'
+#' server <- function(input, output) {
+#'   output$txt <- renderText({
+#'     paste("You chose", input$rb)
+#'   })
+#' }
+#'
+#' shinyApp(ui, server)
 #' }
 #' @export
-radioButtons <- function(inputId, label, choices, selected = NULL,
-  inline = FALSE, width = NULL) {
+radioButtons <- function(inputId, label, choices = NULL, selected = NULL,
+  inline = FALSE, width = NULL, choiceNames = NULL, choiceValues = NULL) {
 
-  # resolve names
-  choices <- choicesWithNames(choices)
+  args <- normalizeChoicesArgs(choices, choiceNames, choiceValues)
 
   selected <- restoreInput(id = inputId, default = selected)
 
   # default value if it's not specified
-  selected <- if (is.null(selected)) choices[[1]] else {
-    validateSelected(selected, choices, inputId)
-  }
+  selected <- if (is.null(selected)) args$choiceValues[[1]] else as.character(selected)
+
   if (length(selected) > 1) stop("The 'selected' argument must be of length 1")
 
-  options <- generateOptions(inputId, choices, selected, inline, type = 'radio')
+  options <- generateOptions(inputId, selected, inline,
+    'radio', args$choiceNames, args$choiceValues)
 
   divClass <- "form-group shiny-input-radiogroup shiny-input-container"
-  if (inline)
-    divClass <- paste(divClass, "shiny-input-container-inline")
+  if (inline) divClass <- paste(divClass, "shiny-input-container-inline")
 
   tags$div(id = inputId,
     style = if (!is.null(width)) paste0("width: ", validateCssUnit(width), ";"),

R/input-select.R

@@ -5,7 +5,7 @@
 #'
 #' By default, \code{selectInput()} and \code{selectizeInput()} use the
 #' JavaScript library \pkg{selectize.js}
-#' (\url{https://github.com/brianreavis/selectize.js}) to instead of the basic
+#' (\url{https://github.com/selectize/selectize.js}) to instead of the basic
 #' select input element. To use the standard HTML select input element, use
 #' \code{selectInput()} with \code{selectize=FALSE}.
 #'
@@ -15,7 +15,12 @@
 #'
 #' @inheritParams textInput
 #' @param choices List of values to select from. If elements of the list are
-#'   named then that name rather than the value is displayed to the user.
+#'   named, then that name rather than the value is displayed to the user.
+#'   This can also be a named list whose elements are (either named or
+#'   unnamed) lists or vectors. If this is the case, the outermost names
+#'   will be used as the "optgroup" label for the elements in the respective
+#'   sublist. This allows you to group and label similar choices. See the
+#'   example section for a small demo of this feature.
 #' @param selected The initially selected value (or multiple values if
 #'   \code{multiple = TRUE}). If not specified then defaults to the first value
 #'   for single-select lists and no values for multiple select lists.
@@ -28,32 +33,49 @@
 #' @return A select list control that can be added to a UI definition.
 #'
 #' @family input elements
-#' @seealso \code{\link{updateSelectInput}}
+#' @seealso \code{\link{updateSelectInput}} \code{\link{varSelectInput}}
 #'
 #' @examples
 #' ## Only run examples in interactive R sessions
 #' if (interactive()) {
 #'
-#' ui <- fluidPage(
-#'   selectInput("variable", "Variable:",
-#'               c("Cylinders" = "cyl",
-#'                 "Transmission" = "am",
-#'                 "Gears" = "gear")),
-#'   tableOutput("data")
+#' # basic example
+#' shinyApp(
+#'   ui = fluidPage(
+#'     selectInput("variable", "Variable:",
+#'                 c("Cylinders" = "cyl",
+#'                   "Transmission" = "am",
+#'                   "Gears" = "gear")),
+#'     tableOutput("data")
+#'   ),
+#'   server = function(input, output) {
+#'     output$data <- renderTable({
+#'       mtcars[, c("mpg", input$variable), drop = FALSE]
+#'     }, rownames = TRUE)
+#'   }
 #' )
 #'
-#' server <- function(input, output) {
-#'   output$data <- renderTable({
-#'     mtcars[, c("mpg", input$variable), drop = FALSE]
-#'   }, rownames = TRUE)
-#' }
-#'
-#' shinyApp(ui, server)
+#' # demoing optgroup support in the `choices` arg
+#' shinyApp(
+#'   ui = fluidPage(
+#'     selectInput("state", "Choose a state:",
+#'       list(`East Coast` = list("NY", "NJ", "CT"),
+#'            `West Coast` = list("WA", "OR", "CA"),
+#'            `Midwest` = list("MN", "WI", "IA"))
+#'     ),
+#'     textOutput("result")
+#'   ),
+#'   server = function(input, output) {
+#'     output$result <- renderText({
+#'       paste("You chose", input$state)
+#'     })
+#'   }
+#' )
 #' }
 #' @export
 selectInput <- function(inputId, label, choices, selected = NULL,
-                        multiple = FALSE, selectize = TRUE, width = NULL,
-                        size = NULL) {
+  multiple = FALSE, selectize = TRUE, width = NULL,
+  size = NULL) {
 
   selected <- restoreInput(id = inputId, default = selected)
 
@@ -63,7 +85,7 @@ selectInput <- function(inputId, label, choices, selected = NULL,
   # default value if it's not specified
   if (is.null(selected)) {
     if (!multiple) selected <- firstChoice(choices)
-  } else selected <- validateSelected(selected, choices, inputId)
+  } else selected <- as.character(selected)
 
   if (!is.null(size) && selectize) {
     stop("'size' argument is incompatible with 'selectize=TRUE'.")
@@ -133,7 +155,7 @@ needOptgroup <- function(choices) {
 #' @rdname selectInput
 #' @param ... Arguments passed to \code{selectInput()}.
 #' @param options A list of options. See the documentation of \pkg{selectize.js}
-#'   for possible options (character option values inside \code{\link{I}()} will
+#'   for possible options (character option values inside \code{\link[base]{I}()} will
 #'   be treated as literal JavaScript code; see \code{\link{renderDataTable}()}
 #'   for details).
 #' @param width The width of the input, e.g. \code{'400px'}, or \code{'100\%'};
@@ -172,7 +194,7 @@ selectizeIt <- function(inputId, select, options, nonempty = FALSE) {
 
   if ('drag_drop' %in% options$plugins) {
     selectizeDep <- list(selectizeDep, htmlDependency(
-      'jqueryui', '1.11.4', c(href = 'shared/jqueryui'),
+      'jqueryui', '1.12.1', c(href = 'shared/jqueryui'),
       script = 'jquery-ui.min.js'
     ))
   }
@@ -190,3 +212,135 @@ selectizeIt <- function(inputId, select, options, nonempty = FALSE) {
 
   attachDependencies(select, selectizeDep)
 }
+
+
+
+
+
+
+
+
+#' Select variables from a data frame
+#'
+#' Create a select list that can be used to choose a single or multiple items
+#' from the column names of a data frame.
+#'
+#' The resulting server \code{input} value will be returned as:
+#' \itemize{
+#'   \item a symbol if \code{multiple = FALSE}.  The \code{input} value should be
+#'         used with rlang's \code{\link[rlang]{!!}}. For example,
+#'         \code{ggplot2::aes(!!input$variable)}.
+#'   \item a list of symbols if \code{multiple = TRUE}. The \code{input} value
+#'         should be used with rlang's \code{\link[rlang]{!!!}} to expand
+#'         the symbol list as individual arguments. For example,
+#'         \code{dplyr::select(mtcars, !!!input$variabls)} which is
+#'         equivalent to \code{dplyr::select(mtcars, !!input$variabls[[1]], !!input$variabls[[2]], ..., !!input$variabls[[length(input$variabls)]])}.
+#' }
+#'
+#' By default, \code{varSelectInput()} and \code{selectizeInput()} use the
+#' JavaScript library \pkg{selectize.js}
+#' (\url{https://github.com/selectize/selectize.js}) to instead of the basic
+#' select input element. To use the standard HTML select input element, use
+#' \code{selectInput()} with \code{selectize=FALSE}.
+#'
+#' @inheritParams selectInput
+#' @param data A data frame. Used to retrieve the column names as choices for a \code{\link{selectInput}}
+#' @return A variable select list control that can be added to a UI definition.
+#'
+#' @family input elements
+#' @seealso \code{\link{updateSelectInput}}
+#' @examples
+#'
+#' ## Only run examples in interactive R sessions
+#' if (interactive()) {
+#'
+#' library(ggplot2)
+#'
+#' # single selection
+#' shinyApp(
+#'   ui = fluidPage(
+#'     varSelectInput("variable", "Variable:", mtcars),
+#'     plotOutput("data")
+#'   ),
+#'   server = function(input, output) {
+#'     output$data <- renderPlot({
+#'       ggplot(mtcars, aes(!!input$variable)) + geom_histogram()
+#'     })
+#'   }
+#' )
+#'
+#'
+#' # multiple selections
+#' \dontrun{
+#' shinyApp(
+#'  ui = fluidPage(
+#'    varSelectInput("variables", "Variable:", mtcars, multiple = TRUE),
+#'    tableOutput("data")
+#'  ),
+#'  server = function(input, output) {
+#'    output$data <- renderTable({
+#'       if (length(input$variables) == 0) return(mtcars)
+#'       mtcars %>% dplyr::select(!!!input$variables)
+#'    }, rownames = TRUE)
+#'  }
+#' )}
+#'
+#' }
+#' @export
+varSelectInput <- function(
+  inputId, label, data, selected = NULL,
+  multiple = FALSE, selectize = TRUE, width = NULL,
+  size = NULL
+) {
+  # no place holders
+  choices <- colnames(data)
+
+  selectInputVal <- selectInput(
+    inputId = inputId,
+    label = label,
+    choices = choices,
+    selected = selected,
+    multiple = multiple,
+    selectize = selectize,
+    width = width,
+    size = size
+  )
+
+  # set the select tag class to be "symbol"
+  selectClass <- selectInputVal$children[[2]]$children[[1]]$attribs$class
+  if (is.null(selectClass)) {
+    newClass <- "symbol"
+  } else {
+    newClass <- paste(selectClass, "symbol", sep = " ")
+  }
+  selectInputVal$children[[2]]$children[[1]]$attribs$class <- newClass
+
+  selectInputVal
+}
+
+
+
+#' @rdname varSelectInput
+#' @param ... Arguments passed to \code{varSelectInput()}.
+#' @param options A list of options. See the documentation of \pkg{selectize.js}
+#'   for possible options (character option values inside \code{\link[base]{I}()} will
+#'   be treated as literal JavaScript code; see \code{\link{renderDataTable}()}
+#'   for details).
+#' @param width The width of the input, e.g. \code{'400px'}, or \code{'100\%'};
+#'   see \code{\link{validateCssUnit}}.
+#' @note The variable selectize input created from \code{varSelectizeInput()} allows
+#'   deletion of the selected option even in a single select input, which will
+#'   return an empty string as its value. This is the default behavior of
+#'   \pkg{selectize.js}. However, the selectize input created from
+#'   \code{selectInput(..., selectize = TRUE)} will ignore the empty string
+#'   value when it is a single choice input and the empty string is not in the
+#'   \code{choices} argument. This is to keep compatibility with
+#'   \code{selectInput(..., selectize = FALSE)}.
+#' @export
+varSelectizeInput <- function(inputId, ..., options = NULL, width = NULL) {
+  selectizeIt(
+    inputId,
+    varSelectInput(inputId, ..., selectize = FALSE, width = width),
+    options
+  )
+}

R/input-slider.R

@@ -36,7 +36,7 @@
 #'   format string, to be passed to the Javascript strftime library. See
 #'   \url{https://github.com/samsonjs/strftime} for more details. The allowed
 #'   format specifications are very similar, but not identical, to those for R's
-#'   \code{\link{strftime}} function. For Dates, the default is \code{"\%F"}
+#'   \code{\link[base]{strftime}} function. For Dates, the default is \code{"\%F"}
 #'   (like \code{"2015-07-01"}), and for POSIXt, the default is \code{"\%F \%T"}
 #'   (like \code{"2015-07-01 15:32:10"}).
 #' @param timezone Only used if the values are POSIXt objects. A string
@@ -51,6 +51,7 @@
 #' @examples
 #' ## Only run examples in interactive R sessions
 #' if (interactive()) {
+#' options(device.ask.default = FALSE)
 #'
 #' ui <- fluidPage(
 #'   sliderInput("obs", "Number of observations:",
@@ -85,40 +86,25 @@ sliderInput <- function(inputId, label, min, max, value, step = NULL,
                     version = "0.10.2.2")
   }
 
-  value <- restoreInput(id = inputId, default = value)
+  dataType <- getSliderType(min, max, value)
 
-  # If step is NULL, use heuristic to set the step size.
-  findStepSize <- function(min, max, step) {
-    if (!is.null(step)) return(step)
-
-    range <- max - min
-    # If short range or decimals, use continuous decimal with ~100 points
-    if (range < 2 || hasDecimals(min) || hasDecimals(max)) {
-      step <- pretty(c(min, max), n = 100)
-      step[2] - step[1]
-    } else {
-      1
-    }
+  if (is.null(timeFormat)) {
+    timeFormat <- switch(dataType, date = "%F", datetime = "%F %T", number = NULL)
   }
 
-  if (inherits(min, "Date")) {
-    if (!inherits(max, "Date") || !inherits(value, "Date"))
-      stop("`min`, `max`, and `value must all be Date or non-Date objects")
-    dataType <- "date"
+  # Restore bookmarked values here, after doing the type checking, because the
+  # restored value will be a character vector instead of Date or POSIXct, and we can do
+  # the conversion to correct type next.
+  value <- restoreInput(id = inputId, default = value)
 
-    if (is.null(timeFormat))
-      timeFormat <- "%F"
-
-  } else if (inherits(min, "POSIXt")) {
-    if (!inherits(max, "POSIXt") || !inherits(value, "POSIXt"))
-      stop("`min`, `max`, and `value must all be POSIXt or non-POSIXt objects")
-    dataType <- "datetime"
-
-    if (is.null(timeFormat))
-      timeFormat <- "%F %T"
-
-  } else {
-    dataType <- "number"
+  if (is.character(value)) {
+    # If we got here, the value was restored from a URL-encoded bookmark.
+    if (dataType == "date") {
+      value <- as.Date(value, format = "%Y-%m-%d")
+    } else if (dataType == "datetime") {
+      # Date-times will have a format like "2018-02-28T03:46:26Z"
+      value <- as.POSIXct(value, format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")
+    }
   }
 
   step <- findStepSize(min, max, step)
@@ -164,11 +150,13 @@ sliderInput <- function(inputId, label, min, max, value, step = NULL,
     `data-grid-num` = n_ticks,
     `data-grid-snap` = FALSE,
     `data-prettify-separator` = sep,
+    `data-prettify-enabled` = (sep != ""),
     `data-prefix` = pre,
     `data-postfix` = post,
     `data-keyboard` = TRUE,
-    `data-keyboard-step` = step / (max - min) * 100,
-    `data-drag-interval` = dragRange,
+    # This value is only relevant for range sliders; for non-range sliders it
+    # causes problems since ion.RangeSlider 2.1.2 (issue #1605).
+    `data-drag-interval` = if (length(value) > 1) dragRange,
     # The following are ignored by the ion.rangeSlider, but are used by Shiny.
     `data-data-type` = dataType,
     `data-time-format` = timeFormat,
@@ -214,7 +202,7 @@ sliderInput <- function(inputId, label, min, max, value, step = NULL,
   }
 
   dep <- list(
-    htmlDependency("ionrangeslider", "2.1.2", c(href="shared/ionrangeslider"),
+    htmlDependency("ionrangeslider", "2.1.6", c(href="shared/ionrangeslider"),
       script = "js/ion.rangeSlider.min.js",
       # ion.rangeSlider also needs normalize.css, which is already included in
       # Bootstrap.
@@ -234,6 +222,34 @@ hasDecimals <- function(value) {
   return (!identical(value, truncatedValue))
 }
 
+
+# If step is NULL, use heuristic to set the step size.
+findStepSize <- function(min, max, step) {
+  if (!is.null(step)) return(step)
+
+  range <- max - min
+  # If short range or decimals, use continuous decimal with ~100 points
+  if (range < 2 || hasDecimals(min) || hasDecimals(max)) {
+    # Workaround for rounding errors (#1006): the intervals between the items
+    # returned by pretty() can have rounding errors. To avoid this, we'll use
+    # pretty() to find the min, max, and number of steps, and then use those
+    # values to calculate the step size.
+    pretty_steps <- pretty(c(min, max), n = 100)
+    n_steps <- length(pretty_steps) - 1
+
+    # Fix for #2061: Windows has low-significance digits (like 17 digits out)
+    # even at the boundaries of pretty()'s output. Use signif(digits = 10),
+    # which should be way way less significant than any data we'd want to keep.
+    # It might make sense to use signif(steps[2] - steps[1], 10) instead, but
+    # for now trying to make the minimal change.
+    signif(digits = 10, (max(pretty_steps) - min(pretty_steps)) / n_steps)
+
+  } else {
+    1
+  }
+}
+
+
 #' @rdname sliderInput
 #'
 #' @param interval The interval, in milliseconds, between each animation step.

R/input-submit.R

@@ -1,8 +1,27 @@
 #' Create a submit button
 #'
-#' Create a submit button for an input form. Forms that include a submit
+#' Create a submit button for an app. Apps that include a submit
 #' button do not automatically update their outputs when inputs change,
 #' rather they wait until the user explicitly clicks the submit button.
+#' The use of \code{submitButton} is generally discouraged in favor of
+#' the more versatile \code{\link{actionButton}} (see details below).
+#'
+#' Submit buttons are unusual Shiny inputs, and we recommend using
+#' \code{\link{actionButton}} instead of \code{submitButton} when you
+#' want to delay a reaction.
+#' See \href{http://shiny.rstudio.com/articles/action-buttons.html}{this
+#' article} for more information (including a demo of how to "translate"
+#' code using a \code{submitButton} to code using an \code{actionButton}).
+#'
+#' In essence, the presence of a submit button stops all inputs from
+#' sending their values automatically to the server. This means, for
+#' instance, that if there are \emph{two} submit buttons in the same app,
+#' clicking either one will cause all inputs in the app to send their
+#' values to the server. This is probably not what you'd want, which is
+#' why submit button are unwieldy for all but the simplest apps. There
+#' are other problems with submit buttons: for example, dynamically
+#' created submit buttons (for example, with \code{\link{renderUI}}
+#' or \code{\link{insertUI}}) will not work.
 #'
 #' @param text Button caption
 #' @param icon Optional \code{\link{icon}} to appear on the button
@@ -13,8 +32,26 @@
 #' @family input elements
 #'
 #' @examples
-#' submitButton("Update View")
-#' submitButton("Update View", icon("refresh"))
+#' if (interactive()) {
+#'
+#' shinyApp(
+#'   ui = basicPage(
+#'     numericInput("num", label = "Make changes", value = 1),
+#'     submitButton("Update View", icon("refresh")),
+#'     helpText("When you click the button above, you should see",
+#'              "the output below update to reflect the value you",
+#'              "entered at the top:"),
+#'     verbatimTextOutput("value")
+#'   ),
+#'   server = function(input, output) {
+#'
+#'     # submit buttons do not have a value of their own,
+#'     # they control when the app accesses values of other widgets.
+#'     # input$num is the value of the number widget.
+#'     output$value <- renderPrint({ input$num })
+#'   }
+#' )
+#' }
 #' @export
 submitButton <- function(text = "Apply Changes", icon = NULL, width = NULL) {
   div(

R/input-utils.R

@@ -2,42 +2,62 @@ controlLabel <- function(controlName, label) {
   label %AND% tags$label(class = "control-label", `for` = controlName, label)
 }
 
-
-# Before shiny 0.9, `selected` refers to names/labels of `choices`; now it
-# refers to values. Below is a function for backward compatibility.
-validateSelected <- function(selected, choices, inputId) {
-  # drop names, otherwise toJSON() keeps them too
-  selected <- unname(selected)
-  # if you are using optgroups, you're using shiny > 0.10.0, and you should
-  # already know that `selected` must be a value instead of a label
-  if (needOptgroup(choices)) return(selected)
-
-  if (is.list(choices)) choices <- unlist(choices)
-
-  nms <- names(choices)
-  # labels and values are identical, no need to validate
-  if (identical(nms, unname(choices))) return(selected)
-  # when selected labels instead of values
-  i <- (selected %in% nms) & !(selected %in% choices)
-  if (any(i)) {
-    warnFun <- if (all(i)) {
-      # replace names with values
-      selected <- unname(choices[selected])
-      warning
-    } else stop  # stop when it is ambiguous (some labels == values)
-    warnFun("'selected' must be the values instead of names of 'choices' ",
-            "for the input '", inputId, "'")
+# This function takes in either a list or vector for `choices` (and
+# `choiceNames` and `choiceValues` are passed in as NULL) OR it takes
+# in a list or vector for both `choiceNames` and `choiceValues` (and
+# `choices` is passed as NULL) and returns a list of two elements:
+#    - `choiceNames` is a vector or list that holds the options names
+#      (each element can be arbitrary UI, or simple text)
+#    - `choiceValues` is a vector or list that holds the options values
+#       (each element must be simple text)
+normalizeChoicesArgs <- function(choices, choiceNames, choiceValues,
+  mustExist = TRUE) {
+  # if-else to check that either choices OR (choiceNames + choiceValues)
+  # were correctly provided
+  if (is.null(choices)) {
+    if (is.null(choiceNames) || is.null(choiceValues)) {
+      if (mustExist) {
+        stop("Please specify a non-empty vector for `choices` (or, ",
+             "alternatively, for both `choiceNames` AND `choiceValues`).")
+      } else {
+        if (is.null(choiceNames) && is.null(choiceValues)) {
+          # this is useful when we call this function from `updateInputOptions()`
+          # in which case, all three `choices`, `choiceNames` and `choiceValues`
+          # may legitimately be NULL
+          return(list(choiceNames = NULL, choiceValues = NULL))
+        } else {
+          stop("One of `choiceNames` or `choiceValues` was set to ",
+               "NULL, but either both or none should be NULL.")
+        }
+      }
+    }
+    if (length(choiceNames) != length(choiceValues)) {
+      stop("`choiceNames` and `choiceValues` must have the same length.")
+    }
+    if (anyNamed(choiceNames) || anyNamed(choiceValues)) {
+      stop("`choiceNames` and `choiceValues` must not be named.")
+    }
+  } else {
+    if (!is.null(choiceNames) || !is.null(choiceValues)) {
+      warning("Using `choices` argument; ignoring `choiceNames` and `choiceValues`.")
+    }
+    choices <- choicesWithNames(choices) # resolve names if not specified
+    choiceNames <- names(choices)
+    choiceValues <- unname(choices)
   }
-  selected
-}
 
+  return(list(choiceNames = as.list(choiceNames),
+              choiceValues = as.list(as.character(choiceValues))))
+}
 
 # generate options for radio buttons and checkbox groups (type = 'checkbox' or
 # 'radio')
-generateOptions <- function(inputId, choices, selected, inline, type = 'checkbox') {
+generateOptions <- function(inputId, selected, inline, type = 'checkbox',
+                            choiceNames, choiceValues,
+                            session = getDefaultReactiveDomain()) {
   # generate a list of <input type=? [checked] />
   options <- mapply(
-    choices, names(choices),
+    choiceValues, choiceNames,
     FUN = function(value, name) {
       inputTag <- tags$input(
         type = type, name = inputId, value = value
@@ -45,14 +65,18 @@ generateOptions <- function(inputId, choices, selected, inline, type = 'checkbox
       if (value %in% selected)
         inputTag$attribs$checked <- "checked"
 
+      # in case, the options include UI code other than text
+      # (arbitrary HTML using the tags() function or equivalent)
+      pd <- processDeps(name, session)
+
       # If inline, there's no wrapper div, and the label needs a class like
       # checkbox-inline.
       if (inline) {
-        tags$label(class = paste0(type, "-inline"), inputTag, tags$span(name))
+        tags$label(class = paste0(type, "-inline"), inputTag,
+                   tags$span(pd$html, pd$deps))
       } else {
-        tags$div(class = type,
-          tags$label(inputTag, tags$span(name))
-        )
+        tags$div(class = type, tags$label(inputTag,
+                 tags$span(pd$html, pd$deps)))
       }
     },
     SIMPLIFY = FALSE, USE.NAMES = FALSE
@@ -63,7 +87,7 @@ generateOptions <- function(inputId, choices, selected, inline, type = 'checkbox
 
 
 # Takes a vector or list, and adds names (same as the value) to any entries
-# without names.
+# without names. Coerces all leaf nodes to `character`.
 choicesWithNames <- function(choices) {
   # Take a vector or list, and convert to list. Also, if any children are
   # vectors with length > 1, convert those to list. If the list is unnamed,
@@ -79,7 +103,7 @@ choicesWithNames <- function(choices) {
       if (is.list(val))
         listify(val)
       else if (length(val) == 1 && is.null(names(val)))
-        val
+        as.character(val)
       else
         makeNamed(as.list(val))
     })

R/insert-tab.R

@@ -0,0 +1,325 @@
+#' Dynamically insert/remove a tabPanel
+#'
+#' Dynamically insert or remove a \code{\link{tabPanel}} (or a
+#' \code{\link{navbarMenu}}) from an existing \code{\link{tabsetPanel}},
+#' \code{\link{navlistPanel}} or \code{\link{navbarPage}}.
+#'
+#' When you want to insert a new tab before or after an existing tab, you
+#' should use \code{insertTab}. When you want to prepend a tab (i.e. add a
+#' tab to the beginning of the \code{tabsetPanel}), use \code{prependTab}.
+#' When you want to append a tab (i.e. add a tab to the end of the
+#' \code{tabsetPanel}), use \code{appendTab}.
+#'
+#' For \code{navbarPage}, you can insert/remove conventional
+#' \code{tabPanel}s (whether at the top level or nested inside a
+#' \code{navbarMenu}), as well as an entire \code{\link{navbarMenu}}.
+#' For the latter case, \code{target} should be the \code{menuName} that
+#' you gave your \code{navbarMenu} when you first created it (by default,
+#' this is equal to the value of the \code{title} argument).
+#'
+#' @param inputId The \code{id} of the \code{tabsetPanel} (or
+#'   \code{navlistPanel} or \code{navbarPage}) into which \code{tab} will
+#'   be inserted/removed.
+#'
+#' @param tab The item to be added (must be created with \code{tabPanel},
+#'   or with \code{navbarMenu}).
+#'
+#' @param target If inserting: the \code{value} of an existing
+#'   \code{tabPanel}, next to which \code{tab} will be added.
+#'   If removing: the \code{value} of the \code{tabPanel} that
+#'   you want to remove. See Details if you want to insert next to/remove
+#'   an entire \code{navbarMenu} instead.
+#'
+#' @param position Should \code{tab} be added before or after the
+#'   \code{target} tab?
+#'
+#' @param select Should \code{tab} be selected upon being inserted?
+#'
+#' @param session The shiny session within which to call this function.
+#'
+#' @seealso \code{\link{showTab}}
+#'
+#' @examples
+#' ## Only run this example in interactive R sessions
+#' if (interactive()) {
+#'
+#' # example app for inserting/removing a tab
+#' ui <- fluidPage(
+#'   sidebarLayout(
+#'     sidebarPanel(
+#'       actionButton("add", "Add 'Dynamic' tab"),
+#'       actionButton("remove", "Remove 'Foo' tab")
+#'     ),
+#'     mainPanel(
+#'       tabsetPanel(id = "tabs",
+#'         tabPanel("Hello", "This is the hello tab"),
+#'         tabPanel("Foo", "This is the foo tab"),
+#'         tabPanel("Bar", "This is the bar tab")
+#'       )
+#'     )
+#'   )
+#' )
+#' server <- function(input, output, session) {
+#'   observeEvent(input$add, {
+#'     insertTab(inputId = "tabs",
+#'       tabPanel("Dynamic", "This a dynamically-added tab"),
+#'       target = "Bar"
+#'     )
+#'   })
+#'   observeEvent(input$remove, {
+#'     removeTab(inputId = "tabs", target = "Foo")
+#'   })
+#' }
+#'
+#' shinyApp(ui, server)
+#'
+#'
+#' # example app for prepending/appending a navbarMenu
+#' ui <- navbarPage("Navbar page", id = "tabs",
+#'   tabPanel("Home",
+#'     actionButton("prepend", "Prepend a navbarMenu"),
+#'     actionButton("append", "Append a navbarMenu")
+#'   )
+#' )
+#' server <- function(input, output, session) {
+#'   observeEvent(input$prepend, {
+#'     id <- paste0("Dropdown", input$prepend, "p")
+#'     prependTab(inputId = "tabs",
+#'       navbarMenu(id,
+#'         tabPanel("Drop1", paste("Drop1 page from", id)),
+#'         tabPanel("Drop2", paste("Drop2 page from", id)),
+#'         "------",
+#'         "Header",
+#'         tabPanel("Drop3", paste("Drop3 page from", id))
+#'       )
+#'     )
+#'   })
+#'   observeEvent(input$append, {
+#'     id <- paste0("Dropdown", input$append, "a")
+#'     appendTab(inputId = "tabs",
+#'       navbarMenu(id,
+#'         tabPanel("Drop1", paste("Drop1 page from", id)),
+#'         tabPanel("Drop2", paste("Drop2 page from", id)),
+#'         "------",
+#'         "Header",
+#'         tabPanel("Drop3", paste("Drop3 page from", id))
+#'       )
+#'     )
+#'   })
+#' }
+#'
+#' shinyApp(ui, server)
+#'
+#' }
+#' @export
+insertTab <- function(inputId, tab, target,
+                      position = c("before", "after"), select = FALSE,
+                      session = getDefaultReactiveDomain()) {
+  force(target)
+  force(select)
+  position <- match.arg(position)
+  inputId <- session$ns(inputId)
+
+  # Barbara -- August 2017
+  # Note: until now, the number of tabs in a tabsetPanel (or navbarPage
+  # or navlistPanel) was always fixed. So, an easy way to give an id to
+  # a tab was simply incrementing a counter. (Just like it was easy to
+  # give a random 4-digit number to identify the tabsetPanel). Since we
+  # can only know this in the client side, we'll just pass `id` and
+  # `tsid` (TabSetID) as dummy values that will be fixed in the JS code.
+  item <- buildTabItem("id", "tsid", TRUE, divTag = tab,
+    textFilter = if (is.character(tab)) navbarMenuTextFilter else NULL)
+
+  callback <- function() {
+    session$sendInsertTab(
+      inputId = inputId,
+      liTag = processDeps(item$liTag, session),
+      divTag = processDeps(item$divTag, session),
+      menuName = NULL,
+      target = target,
+      position = position,
+      select = select)
+  }
+  session$onFlush(callback, once = TRUE)
+}
+
+#' @param menuName This argument should only be used when you want to
+#'   prepend (or append) \code{tab} to the beginning (or end) of an
+#'   existing \code{\link{navbarMenu}} (which must itself be part of
+#'   an existing \code{\link{navbarPage}}). In this case, this argument
+#'   should be the \code{menuName} that you gave your \code{navbarMenu}
+#'   when you first created it (by default, this is equal to the value
+#'   of the \code{title} argument). Note that you still need to set the
+#'   \code{inputId} argument to whatever the \code{id} of the parent
+#'   \code{navbarPage} is. If \code{menuName} is left as \code{NULL},
+#'   \code{tab} will be prepended (or appended) to whatever
+#'   \code{inputId} is.
+#'
+#' @rdname insertTab
+#' @export
+prependTab <- function(inputId, tab, select = FALSE, menuName = NULL,
+                       session = getDefaultReactiveDomain()) {
+  force(select)
+  force(menuName)
+  inputId <- session$ns(inputId)
+
+  item <- buildTabItem("id", "tsid", TRUE, divTag = tab,
+    textFilter = if (is.character(tab)) navbarMenuTextFilter else NULL)
+
+  callback <- function() {
+    session$sendInsertTab(
+      inputId = inputId,
+      liTag = processDeps(item$liTag, session),
+      divTag = processDeps(item$divTag, session),
+      menuName = menuName,
+      target = NULL,
+      position = "after",
+      select = select)
+  }
+  session$onFlush(callback, once = TRUE)
+}
+
+#' @rdname insertTab
+#' @export
+appendTab <- function(inputId, tab, select = FALSE, menuName = NULL,
+                      session = getDefaultReactiveDomain()) {
+  force(select)
+  force(menuName)
+  inputId <- session$ns(inputId)
+
+  item <- buildTabItem("id", "tsid", TRUE, divTag = tab,
+    textFilter = if (is.character(tab)) navbarMenuTextFilter else NULL)
+
+  callback <- function() {
+    session$sendInsertTab(
+      inputId = inputId,
+      liTag = processDeps(item$liTag, session),
+      divTag = processDeps(item$divTag, session),
+      menuName = menuName,
+      target = NULL,
+      position = "before",
+      select = select)
+  }
+  session$onFlush(callback, once = TRUE)
+}
+
+#' @rdname insertTab
+#' @export
+removeTab <- function(inputId, target,
+                      session = getDefaultReactiveDomain()) {
+  force(target)
+  inputId <- session$ns(inputId)
+
+  callback <- function() {
+    session$sendRemoveTab(
+      inputId = inputId,
+      target = target)
+  }
+  session$onFlush(callback, once = TRUE)
+}
+
+
+#' Dynamically hide/show a tabPanel
+#'
+#' Dynamically hide or show a \code{\link{tabPanel}} (or a
+#' \code{\link{navbarMenu}})from an existing \code{\link{tabsetPanel}},
+#' \code{\link{navlistPanel}} or \code{\link{navbarPage}}.
+#'
+#' For \code{navbarPage}, you can hide/show conventional
+#' \code{tabPanel}s (whether at the top level or nested inside a
+#' \code{navbarMenu}), as well as an entire \code{\link{navbarMenu}}.
+#' For the latter case, \code{target} should be the \code{menuName} that
+#' you gave your \code{navbarMenu} when you first created it (by default,
+#' this is equal to the value of the \code{title} argument).
+#'
+#' @param inputId The \code{id} of the \code{tabsetPanel} (or
+#'   \code{navlistPanel} or \code{navbarPage}) in which to find
+#'   \code{target}.
+#'
+#' @param target The \code{value} of the \code{tabPanel} to be
+#'   hidden/shown. See Details if you want to hide/show an entire
+#'   \code{navbarMenu} instead.
+#'
+#' @param select Should \code{target} be selected upon being shown?
+#'
+#' @param session The shiny session within which to call this function.
+#'
+#' @seealso \code{\link{insertTab}}
+#'
+#' @examples
+#' ## Only run this example in interactive R sessions
+#' if (interactive()) {
+#'
+#' ui <- navbarPage("Navbar page", id = "tabs",
+#'   tabPanel("Home",
+#'     actionButton("hideTab", "Hide 'Foo' tab"),
+#'     actionButton("showTab", "Show 'Foo' tab"),
+#'     actionButton("hideMenu", "Hide 'More' navbarMenu"),
+#'     actionButton("showMenu", "Show 'More' navbarMenu")
+#'   ),
+#'   tabPanel("Foo", "This is the foo tab"),
+#'   tabPanel("Bar", "This is the bar tab"),
+#'   navbarMenu("More",
+#'     tabPanel("Table", "Table page"),
+#'     tabPanel("About", "About page"),
+#'     "------",
+#'     "Even more!",
+#'     tabPanel("Email", "Email page")
+#'   )
+#' )
+#'
+#' server <- function(input, output, session) {
+#'   observeEvent(input$hideTab, {
+#'     hideTab(inputId = "tabs", target = "Foo")
+#'   })
+#'
+#'   observeEvent(input$showTab, {
+#'     showTab(inputId = "tabs", target = "Foo")
+#'   })
+#'
+#'   observeEvent(input$hideMenu, {
+#'     hideTab(inputId = "tabs", target = "More")
+#'   })
+#'
+#'   observeEvent(input$showMenu, {
+#'     showTab(inputId = "tabs", target = "More")
+#'   })
+#' }
+#'
+#' shinyApp(ui, server)
+#' }
+#'
+#' @export
+showTab <- function(inputId, target, select = FALSE,
+                    session = getDefaultReactiveDomain()) {
+  force(target)
+
+  if (select) updateTabsetPanel(session, inputId, selected = target)
+  inputId <- session$ns(inputId)
+
+  callback <- function() {
+    session$sendChangeTabVisibility(
+      inputId = inputId,
+      target = target,
+      type = "show"
+    )
+  }
+  session$onFlush(callback, once = TRUE)
+}
+
+#' @rdname showTab
+#' @export
+hideTab <- function(inputId, target,
+                    session = getDefaultReactiveDomain()) {
+  force(target)
+  inputId <- session$ns(inputId)
+
+  callback <- function() {
+    session$sendChangeTabVisibility(
+      inputId = inputId,
+      target = target,
+      type = "hide"
+    )
+  }
+  session$onFlush(callback, once = TRUE)
+}

R/jqueryui.R

@@ -79,8 +79,6 @@ absolutePanel <- function(...,
   if (isTRUE(draggable)) {
     divTag <- tagAppendAttributes(divTag, class='draggable')
     return(tagList(
-      # IMPORTANT NOTE: If you update jqueryui, make sure you DON'T include the datepicker,
-      # as it collides with our bootstrap datepicker!
       singleton(tags$head(tags$script(src='shared/jqueryui/jquery-ui.min.js'))),
       divTag,
       tags$script('$(".draggable").draggable();')

R/middleware.R

@@ -191,7 +191,7 @@ staticHandler <- function(root) {
     if (!identical(req$REQUEST_METHOD, 'GET'))
       return(NULL)
 
-    path <- req$PATH_INFO
+    path <- URLdecode(req$PATH_INFO)
 
     if (is.null(path))
       return(httpResponse(400, content="<h1>Bad Request</h1>"))
@@ -351,38 +351,72 @@ HandlerManager <- R6Class("HandlerManager",
         }
 
         response <- handler(req)
-        if (is.null(response))
-          response <- httpResponse(404, content="<h1>Not Found</h1>")
 
-        if (inherits(response, "httpResponse")) {
-          headers <- as.list(response$headers)
-          headers$'Content-Type' <- response$content_type
+        res <- hybrid_chain(response, function(response) {
+          if (is.null(response))
+            response <- httpResponse(404, content="<h1>Not Found</h1>")
+
+          if (inherits(response, "httpResponse")) {
+            headers <- as.list(response$headers)
+            headers$'Content-Type' <- response$content_type
+
+            response <- filter(req, response)
+            if (head_request) {
+
+              headers$`Content-Length` <- getResponseContentLength(response, deleteOwnedContent = TRUE)
+
+              return(list(
+                status = response$status,
+                body = "",
+                headers = headers
+              ))
+            } else {
+              return(list(
+                status = response$status,
+                body = response$content,
+                headers = headers
+              ))
+            }
 
-          response <- filter(req, response)
-          if (head_request) {
-            headers$`Content-Length` <- nchar(response$content, type = "bytes")
-            return(list(
-              status = response$status,
-              body = "",
-              headers = headers
-            ))
           } else {
-            return(list(
-              status = response$status,
-              body = response$content,
-              headers = headers
-            ))
+            # Assume it's a Rook-compatible response
+            return(response)
           }
-
-        } else {
-          # Assume it's a Rook-compatible response
-          return(response)
-        }
+        })
       }
     }
   )
 )
 
+# Safely get the Content-Length of a Rook response, or NULL if the length cannot
+# be determined for whatever reason (probably malformed response$content).
+# If deleteOwnedContent is TRUE, then the function should delete response
+# content that is of the form list(file=..., owned=TRUE).
+getResponseContentLength <- function(response, deleteOwnedContent) {
+  force(deleteOwnedContent)
+
+  result <- if (is.character(response$content) && length(response$content) == 1) {
+    nchar(response$content, type = "bytes")
+  } else if (is.raw(response$content)) {
+    length(response$content)
+  } else if (is.list(response$content) && !is.null(response$content$file)) {
+    if (deleteOwnedContent && isTRUE(response$content$owned)) {
+      on.exit(unlink(response$content$file, recursive = FALSE, force = FALSE), add = TRUE)
+    }
+    file.info(response$content$file)$size
+  } else {
+    warning("HEAD request for unexpected content class ", class(response$content)[[1]])
+    NULL
+  }
+
+  if (is.na(result)) {
+    # Mostly for missing file case
+    return(NULL)
+  } else {
+    return(result)
+  }
+}
+
 #
 # ## Next steps
 #

R/modal.R

@@ -43,6 +43,8 @@ removeModal <- function(session = getDefaultReactiveDomain()) {
 #'   \code{FALSE} (the default), the modal dialog can't be dismissed in those
 #'   ways; instead it must be dismissed by clicking on the dismiss button, or
 #'   from a call to \code{\link{removeModal}} on the server.
+#' @param fade If \code{FALSE}, the modal dialog will have no fade-in animation
+#'   (it will simply appear rather than fade in to view).
 #'
 #' @examples
 #' if (interactive()) {
@@ -143,11 +145,12 @@ removeModal <- function(session = getDefaultReactiveDomain()) {
 #' }
 #' @export
 modalDialog <- function(..., title = NULL, footer = modalButton("Dismiss"),
-  size = c("m", "s", "l"), easyClose = FALSE) {
+  size = c("m", "s", "l"), easyClose = FALSE, fade = TRUE) {
 
   size <- match.arg(size)
 
-  div(id = "shiny-modal", class = "modal fade", tabindex = "-1",
+  cls <- if (fade) "modal fade" else "modal"
+  div(id = "shiny-modal", class = cls, tabindex = "-1",
     `data-backdrop` = if (!easyClose) "static",
     `data-keyboard` = if (!easyClose) "false",
 

R/modules.R

@@ -26,6 +26,11 @@ createSessionProxy <- function(parentSession, ...) {
 
 #' @export
 `$<-.session_proxy` <- function(x, name, value) {
+  # this line allows users to write into session$userData
+  # (e.g. it allows something like `session$userData$x <- TRUE`,
+  # but not `session$userData <- TRUE`) from within a module
+  # without any hacks (see PR #1732)
+  if (identical(x[[name]], value)) return(x)
   stop("Attempted to assign value on session proxy.")
 }
 

R/progress.R

@@ -55,7 +55,6 @@
 #'   de-emphasized appearance relative to \code{message}.
 #' @param value A numeric value at which to set
 #'   the progress bar, relative to \code{min} and \code{max}.
-#'   \code{NULL} hides the progress bar, if it is currently visible.
 #' @param style Progress display style. If \code{"notification"} (the default),
 #'   the progress indicator will show using Shiny's notification API. If
 #'   \code{"old"}, use the same HTML and CSS used in Shiny 0.13.2 and below
@@ -98,7 +97,6 @@
 #' @export
 Progress <- R6Class(
   'Progress',
-  portable = TRUE,
   public = list(
 
     initialize = function(session = getDefaultReactiveDomain(),
@@ -112,8 +110,8 @@ Progress <- R6Class(
       private$id <- createUniqueId(8)
       private$min <- min
       private$max <- max
-      private$style <- match.arg(style, choices = c("notification", "old"))
       private$value <- NULL
+      private$style <- match.arg(style, choices = c("notification", "old"))
       private$closed <- FALSE
 
       session$sendProgress('open', list(id = private$id, style = private$style))
@@ -125,15 +123,15 @@ Progress <- R6Class(
         return()
       }
 
-      if (is.null(value) || is.na(value)) {
+      if (is.null(value) || is.na(value))
         value <- NULL
-      } else {
+
+      if (!is.null(value)) {
+        private$value <- value
         # Normalize value to number between 0 and 1
         value <- min(1, max(0, (value - private$min) / (private$max - private$min)))
       }
 
-      private$value <- value
-
       data <- dropNulls(list(
         id = private$id,
         message = message,
@@ -142,11 +140,14 @@ Progress <- R6Class(
         style = private$style
       ))
 
-       private$session$sendProgress('update', data)
+      private$session$sendProgress('update', data)
     },
 
     inc = function(amount = 0.1, message = NULL, detail = NULL) {
-      value <- min(self$getValue() + amount, private$max)
+      if (is.null(private$value))
+        private$value <- private$min
+
+      value <- min(private$value + amount, private$max)
       self$set(value, message, detail)
     },
 
@@ -154,10 +155,7 @@ Progress <- R6Class(
 
     getMax = function() private$max,
 
-    # Return value (not the normalized 0-1 value, but in the original range)
-    getValue = function() {
-      private$value * (private$max - private$min) + private$min
-    },
+    getValue = function() private$value,
 
     close = function() {
       if (private$closed) {
@@ -173,12 +171,12 @@ Progress <- R6Class(
   ),
 
   private = list(
-    session = 'environment',
+    session = 'ShinySession',
     id = character(0),
     min = numeric(0),
     max = numeric(0),
     style = character(0),
-    value = NULL,
+    value = numeric(0),
     closed = logical(0)
   )
 )
@@ -239,12 +237,12 @@ Progress <- R6Class(
 #'   \code{"old"}, use the same HTML and CSS used in Shiny 0.13.2 and below
 #'   (this is for backward-compatibility).
 #' @param value Single-element numeric vector; the value at which to set the
-#'   progress bar, relative to \code{min} and \code{max}. \code{NULL} hides the
-#'   progress bar, if it is currently visible.
+#'   progress bar, relative to \code{min} and \code{max}.
 #'
 #' @examples
 #' ## Only run examples in interactive R sessions
 #' if (interactive()) {
+#' options(device.ask.default = FALSE)
 #'
 #' ui <- fluidPage(
 #'   plotOutput("plot")

R/react.R

@@ -1,3 +1,21 @@
+processId <- local({
+  # pid is not sufficient to uniquely identify a process, because
+  # distributed futures span machines which could introduce pid
+  # collisions.
+  cached <- NULL
+  function() {
+    if (is.null(cached)) {
+      cached <<- digest::digest(list(
+        Sys.info(),
+        Sys.time()
+      ))
+    }
+    # Sys.getpid() cannot be cached because forked children will
+    # then have the same processId as their parents.
+    paste(cached, Sys.getpid())
+  }
+})
+
 Context <- R6Class(
   'Context',
   portable = FALSE,
@@ -9,25 +27,37 @@ Context <- R6Class(
     .invalidateCallbacks = list(),
     .flushCallbacks = list(),
     .domain = NULL,
+    .pid = NULL,
 
     initialize = function(domain, label='', type='other', prevId='') {
       id <<- .getReactiveEnvironment()$nextId()
       .label <<- label
       .domain <<- domain
+      .pid <<- processId()
       .graphCreateContext(id, label, type, prevId, domain)
     },
     run = function(func) {
       "Run the provided function under this context."
-      withReactiveDomain(.domain, {
-        env <- .getReactiveEnvironment()
-        .graphEnterContext(id)
-        on.exit(.graphExitContext(id), add = TRUE)
-        env$runWith(self, func)
+
+      promises::with_promise_domain(reactivePromiseDomain(), {
+        withReactiveDomain(.domain, {
+          env <- .getReactiveEnvironment()
+          .graphEnterContext(id)
+          on.exit({
+            .graphExitContext(id, domain = .domain)
+          }, add = TRUE)
+          env$runWith(self, func)
+        })
       })
     },
     invalidate = function() {
       "Invalidate this context. It will immediately call the callbacks
         that have been registered with onInvalidate()."
+
+      if (!identical(.pid, processId())) {
+        stop("Reactive context was created in one process and invalidated from another")
+      }
+
       if (.invalidated)
         return()
       .invalidated <<- TRUE
@@ -43,6 +73,11 @@ Context <- R6Class(
       "Register a function to be called when this context is invalidated.
         If this context is already invalidated, the function is called
         immediately."
+
+      if (!identical(.pid, processId())) {
+        stop("Reactive context was created in one process and accessed from another")
+      }
+
       if (.invalidated)
         func()
       else
@@ -52,9 +87,6 @@ Context <- R6Class(
     addPendingFlush = function(priority) {
       "Tell the reactive environment that this context should be flushed the
         next time flushReact() called."
-      if (!is.null(.domain)) {
-        .domain$incrementBusyCount()
-      }
       .getReactiveEnvironment()$addPendingFlush(self, priority)
     },
     onFlush = function(func) {
@@ -64,12 +96,6 @@ Context <- R6Class(
     executeFlushCallbacks = function() {
       "For internal use only."
 
-      on.exit({
-        if (!is.null(.domain)) {
-          .domain$decrementBusyCount()
-        }
-      }, add = TRUE)
-
       lapply(.flushCallbacks, function(flushCallback) {
         flushCallback()
       })
@@ -118,9 +144,12 @@ ReactiveEnvironment <- R6Class(
     hasPendingFlush = function() {
       return(!.pendingFlush$isEmpty())
     },
+    # Returns TRUE if anything was actually called
     flush = function() {
+      # If nothing to flush, exit early
+      if (!hasPendingFlush()) return(invisible(FALSE))
       # If already in a flush, don't start another one
-      if (.inFlush) return()
+      if (.inFlush) return(invisible(FALSE))
       .inFlush <<- TRUE
       on.exit(.inFlush <<- FALSE)
 
@@ -128,6 +157,8 @@ ReactiveEnvironment <- R6Class(
         ctx <- .pendingFlush$dequeue()
         ctx$executeFlushCallbacks()
       }
+
+      invisible(TRUE)
     }
   )
 )
@@ -141,9 +172,10 @@ ReactiveEnvironment <- R6Class(
   }
 })
 
-# Causes any pending invalidations to run.
+# Causes any pending invalidations to run. Returns TRUE if any invalidations
+# were pending (i.e. if work was actually done).
 flushReact <- function() {
-  .getReactiveEnvironment()$flush()
+  return(.getReactiveEnvironment()$flush())
 }
 
 # Retrieves the current reactive context, or errors if there is no reactive
@@ -163,3 +195,31 @@ local({
     return(dummyContext)
   }
 })
+
+wrapForContext <- function(func, ctx) {
+  force(func)
+  force(ctx)
+
+  function(...) {
+    ctx$run(function() {
+      captureStackTraces(
+        func(...)
+      )
+    })
+  }
+}
+
+reactivePromiseDomain <- function() {
+  promises::new_promise_domain(
+    wrapOnFulfilled = function(onFulfilled) {
+      force(onFulfilled)
+      ctx <- getCurrentContext()
+      wrapForContext(onFulfilled, ctx)
+    },
+    wrapOnRejected = function(onRejected) {
+      force(onRejected)
+      ctx <- getCurrentContext()
+      wrapForContext(onRejected, ctx)
+    }
+  )
+}

R/reactive-domains.R

@@ -95,11 +95,7 @@ getDefaultReactiveDomain <- function() {
 #' @rdname domains
 #' @export
 withReactiveDomain <- function(domain, expr) {
-  oldValue <- .globals$domain
-  .globals$domain <- domain
-  on.exit(.globals$domain <- oldValue)
-
-  expr
+  promises::with_promise_domain(createVarPromiseDomain(.globals, "domain", domain), expr)
 }
 
 #

R/render-cached-plot.R

@@ -0,0 +1,588 @@
+#' Plot output with cached images
+#'
+#' Renders a reactive plot, with plot images cached to disk.
+#'
+#' \code{expr} is an expression that generates a plot, similar to that in
+#' \code{renderPlot}. Unlike with \code{renderPlot}, this expression does not
+#' take reactive dependencies. It is re-executed only when the cache key
+#' changes.
+#'
+#' \code{cacheKeyExpr} is an expression which, when evaluated, returns an object
+#' which will be serialized and hashed using the \code{\link[digest]{digest}}
+#' function to generate a string that will be used as a cache key. This key is
+#' used to identify the contents of the plot: if the cache key is the same as a
+#' previous time, it assumes that the plot is the same and can be retrieved from
+#' the cache.
+#'
+#' This \code{cacheKeyExpr} is reactive, and so it will be re-evaluated when any
+#' upstream reactives are invalidated. This will also trigger re-execution of
+#' the plotting expression, \code{expr}.
+#'
+#' The key should consist of "normal" R objects, like vectors and lists. Lists
+#' should in turn contain other normal R objects. If the key contains
+#' environments, external pointers, or reference objects -- or even if it has
+#' such objects attached as attributes -- then it is possible that it will
+#' change unpredictably even when you do not expect it to. Additionally, because
+#' the entire key is serialized and hashed, if it contains a very large object
+#' -- a large data set, for example -- there may be a noticeable performance
+#' penalty.
+#'
+#' If you face these issues with the cache key, you can work around them by
+#' extracting out the important parts of the objects, and/or by converting them
+#' to normal R objects before returning them. Your expression could even
+#' serialize and hash that information in an efficient way and return a string,
+#' which will in turn be hashed (very quickly) by the
+#' \code{\link[digest]{digest}} function.
+#'
+#' Internally, the result from \code{cacheKeyExpr} is combined with the name of
+#' the output (if you assign it to \code{output$plot1}, it will be combined
+#' with \code{"plot1"}) to form the actual key that is used. As a result, even
+#' if there are multiple plots that have the same \code{cacheKeyExpr}, they
+#' will not have cache key collisions.
+#'
+#' @section Cache scoping:
+#'
+#'   There are a number of different ways you may want to scope the cache. For
+#'   example, you may want each user session to have their own plot cache, or
+#'   you may want each run of the application to have a cache (shared among
+#'   possibly multiple simultaneous user sessions), or you may want to have a
+#'   cache that persists even after the application is shut down and started
+#'   again.
+#'
+#'   To control the scope of the cache, use the \code{cache} parameter. There
+#'   are two ways of having Shiny automatically create and clean up the disk
+#'   cache.
+#'
+#' \describe{
+#'   \item{1}{To scope the cache to one run of a Shiny application (shared
+#'     among possibly multiple user sessions), use \code{cache="app"}. This
+#'     is the default. The cache will be shared across multiple sessions, so
+#'     there is potentially a large performance benefit if there are many users
+#'     of the application. When the application stops running, the cache will
+#'     be deleted. If plots cannot be safely shared across users, this should
+#'     not be used.}
+#'   \item{2}{To scope the cache to one session, use \code{cache="session"}.
+#'     When a new user session starts -- in other words, when a web browser
+#'     visits the Shiny application -- a new cache will be created on disk
+#'     for that session. When the session ends, the cache will be deleted.
+#'     The cache will not be shared across multiple sessions.}
+#'  }
+#'
+#'   If either \code{"app"} or \code{"session"} is used, the cache will be 10 MB
+#'   in size, and will be stored stored in memory, using a
+#'   \code{\link{memoryCache}} object. Note that the cache space will be shared
+#'   among all cached plots within a single application or session.
+#'
+#'   In some cases, you may want more control over the caching behavior. For
+#'   example, you may want to use a larger or smaller cache, share a cache
+#'   among multiple R processes, or you may want the cache to persist across
+#'   multiple runs of an application, or even across multiple R processes.
+#'
+#'   To use different settings for an application-scoped cache, you can call
+#'   \code{\link{shinyOptions}()} at the top of your app.R, server.R, or
+#'   global.R. For example, this will create a cache with 20 MB of space
+#'   instead of the default 10 MB:
+#'   \preformatted{
+#'   shinyOptions(cache = memoryCache(size = 20e6))
+#'   }
+#'
+#'   To use different settings for a session-scoped cache, you can call
+#'   \code{\link{shinyOptions}()} at the top of your server function. To use
+#'   the session-scoped cache, you must also call \code{renderCachedPlot} with
+#'   \code{cache="session"}. This will create a 20 MB cache for the session:
+#'   \preformatted{
+#'   function(input, output, session) {
+#'     shinyOptions(cache = memoryCache(size = 20e6))
+#'
+#'     output$plot <- renderCachedPlot(
+#'       ...,
+#'       cache = "session"
+#'     )
+#'   }
+#'   }
+#'
+#'   If you want to create a cache that is shared across multiple concurrent
+#'   R processes, you can use a \code{\link{diskCache}}. You can create an
+#'   application-level shared cache by putting this at the top of your app.R,
+#'   server.R, or global.R:
+#'   \preformatted{
+#'   shinyOptions(cache = diskCache(file.path(dirname(tempdir()), "myapp-cache"))
+#'   }
+#'
+#'   This will create a subdirectory in your system temp directory named
+#'   \code{myapp-cache} (replace \code{myapp-cache} with a unique name of
+#'   your choosing). On most platforms, this directory will be removed when
+#'   your system reboots. This cache will persist across multiple starts and
+#'   stops of the R process, as long as you do not reboot.
+#'
+#'   To have the cache persist even across multiple reboots, you can create the
+#'   cache in a location outside of the temp directory. For example, it could
+#'   be a subdirectory of the application:
+#'   \preformatted{
+#'   shinyOptions(cache = diskCache("./myapp-cache"))
+#'   }
+#'
+#'   In this case, resetting the cache will have to be done manually, by deleting
+#'   the directory.
+#'
+#'   You can also scope a cache to just one plot, or selected plots. To do that,
+#'   create a \code{\link{memoryCache}} or \code{\link{diskCache}}, and pass it
+#'   as the \code{cache} argument of \code{renderCachedPlot}.
+#'
+#' @section Interactive plots:
+#'
+#'   \code{renderCachedPlot} can be used to create interactive plots. See
+#'   \code{\link{plotOutput}} for more information and examples.
+#'
+#'
+#' @inheritParams renderPlot
+#' @param cacheKeyExpr An expression that returns a cache key. This key should
+#'   be a unique identifier for a plot: the assumption is that if the cache key
+#'   is the same, then the plot will be the same.
+#' @param sizePolicy A function that takes two arguments, \code{width} and
+#'   \code{height}, and returns a list with \code{width} and \code{height}. The
+#'   purpose is to round the actual pixel dimensions from the browser to some
+#'   other dimensions, so that this will not generate and cache images of every
+#'   possible pixel dimension. See \code{\link{sizeGrowthRatio}} for more
+#'   information on the default sizing policy.
+#' @param res The resolution of the PNG, in pixels per inch.
+#' @param cache The scope of the cache, or a cache object. This can be
+#'   \code{"app"} (the default), \code{"session"}, or a cache object like
+#'   a \code{\link{diskCache}}. See the Cache Scoping section for more
+#'   information.
+#'
+#' @seealso See \code{\link{renderPlot}} for the regular, non-cached version of
+#'   this function. For more about configuring caches, see
+#'   \code{\link{memoryCache}} and \code{\link{diskCache}}.
+#'
+#'
+#' @examples
+#' ## Only run examples in interactive R sessions
+#' if (interactive()) {
+#'
+#' # A basic example that uses the default app-scoped memory cache.
+#' # The cache will be shared among all simultaneous users of the application.
+#' shinyApp(
+#'   fluidPage(
+#'     sidebarLayout(
+#'       sidebarPanel(
+#'         sliderInput("n", "Number of points", 4, 32, value = 8, step = 4)
+#'       ),
+#'       mainPanel(plotOutput("plot"))
+#'     )
+#'   ),
+#'   function(input, output, session) {
+#'     output$plot <- renderCachedPlot({
+#'         Sys.sleep(2)  # Add an artificial delay
+#'         seqn <- seq_len(input$n)
+#'         plot(mtcars$wt[seqn], mtcars$mpg[seqn],
+#'              xlim = range(mtcars$wt), ylim = range(mtcars$mpg))
+#'       },
+#'       cacheKeyExpr = { list(input$n) }
+#'     )
+#'   }
+#' )
+#'
+#'
+#'
+#' # An example uses a data object shared across sessions. mydata() is part of
+#' # the cache key, so when its value changes, plots that were previously
+#' # stored in the cache will no longer be used (unless mydata() changes back
+#' # to its previous value).
+#' mydata <- reactiveVal(data.frame(x = rnorm(400), y = rnorm(400)))
+#'
+#' ui <- fluidPage(
+#'   sidebarLayout(
+#'     sidebarPanel(
+#'       sliderInput("n", "Number of points", 50, 400, 100, step = 50),
+#'       actionButton("newdata", "New data")
+#'     ),
+#'     mainPanel(
+#'       plotOutput("plot")
+#'     )
+#'   )
+#' )
+#'
+#' server <- function(input, output, session) {
+#'   observeEvent(input$newdata, {
+#'     mydata(data.frame(x = rnorm(400), y = rnorm(400)))
+#'   })
+#'
+#'   output$plot <- renderCachedPlot(
+#'     {
+#'       Sys.sleep(2)
+#'       d <- mydata()
+#'       seqn <- seq_len(input$n)
+#'       plot(d$x[seqn], d$y[seqn], xlim = range(d$x), ylim = range(d$y))
+#'     },
+#'     cacheKeyExpr = { list(input$n, mydata()) },
+#'   )
+#' }
+#'
+#' shinyApp(ui, server)
+#'
+#'
+#' # A basic application with two plots, where each plot in each session has
+#' # a separate cache.
+#' shinyApp(
+#'   fluidPage(
+#'     sidebarLayout(
+#'       sidebarPanel(
+#'         sliderInput("n", "Number of points", 4, 32, value = 8, step = 4)
+#'       ),
+#'       mainPanel(
+#'         plotOutput("plot1"),
+#'         plotOutput("plot2")
+#'       )
+#'     )
+#'   ),
+#'   function(input, output, session) {
+#'     output$plot1 <- renderCachedPlot({
+#'         Sys.sleep(2)  # Add an artificial delay
+#'         seqn <- seq_len(input$n)
+#'         plot(mtcars$wt[seqn], mtcars$mpg[seqn],
+#'              xlim = range(mtcars$wt), ylim = range(mtcars$mpg))
+#'       },
+#'       cacheKeyExpr = { list(input$n) },
+#'       cache = memoryCache()
+#'     )
+#'     output$plot2 <- renderCachedPlot({
+#'         Sys.sleep(2)  # Add an artificial delay
+#'         seqn <- seq_len(input$n)
+#'         plot(mtcars$wt[seqn], mtcars$mpg[seqn],
+#'              xlim = range(mtcars$wt), ylim = range(mtcars$mpg))
+#'       },
+#'       cacheKeyExpr = { list(input$n) },
+#'       cache = memoryCache()
+#'     )
+#'   }
+#' )
+#'
+#' }
+#'
+#' \dontrun{
+#' # At the top of app.R, this set the application-scoped cache to be a memory
+#' # cache that is 20 MB in size, and where cached objects expire after one
+#' # hour.
+#' shinyOptions(cache = memoryCache(max_size = 20e6, max_age = 3600))
+#'
+#' # At the top of app.R, this set the application-scoped cache to be a disk
+#' # cache that can be shared among multiple concurrent R processes, and is
+#' # deleted when the system reboots.
+#' shinyOptions(cache = diskCache(file.path(dirname(tempdir()), "myapp-cache"))
+#'
+#' # At the top of app.R, this set the application-scoped cache to be a disk
+#' # cache that can be shared among multiple concurrent R processes, and
+#' # persists on disk across reboots.
+#' shinyOptions(cache = diskCache("./myapp-cache"))
+#'
+#' # At the top of the server function, this set the session-scoped cache to be
+#' # a memory cache that is 5 MB in size.
+#' server <- function(input, output, session) {
+#'   shinyOptions(cache = memoryCache(max_size = 5e6))
+#'
+#'   output$plot <- renderCachedPlot(
+#'     ...,
+#'     cache = "session"
+#'   )
+#' }
+#'
+#' }
+#' @export
+renderCachedPlot <- function(expr,
+  cacheKeyExpr,
+  sizePolicy = sizeGrowthRatio(width = 400, height = 400, growthRate = 1.2),
+  res = 72,
+  cache = "app",
+  ...,
+  outputArgs = list()
+) {
+
+  # This ..stacktraceon is matched by a ..stacktraceoff.. when plotFunc
+  # is called
+  installExprFunction(expr, "func", parent.frame(), quoted = FALSE, ..stacktraceon = TRUE)
+  # This is so that the expr doesn't re-execute by itself; it needs to be
+  # triggered by the cache key (or width/height) changing.
+  isolatedFunc <- function() isolate(func())
+
+  args <- list(...)
+
+  cacheKeyExpr <- substitute(cacheKeyExpr)
+  # The real cache key we'll use also includes width, height, res, pixelratio.
+  # This is just the part supplied by the user.
+  userCacheKey <- reactive(cacheKeyExpr, env = parent.frame(), quoted = TRUE, label = "userCacheKey")
+
+  ensureCacheSetup <- function() {
+    # For our purposes, cache objects must support these methods.
+    isCacheObject <- function(x) {
+      # Use tryCatch in case the object does not support `$`.
+      tryCatch(
+        is.function(x$get) && is.function(x$set),
+        error = function(e) FALSE
+      )
+    }
+
+    if (isCacheObject(cache)) {
+      # If `cache` is already a cache object, do nothing
+      return()
+
+    } else if (identical(cache, "app")) {
+      cache <<- getShinyOption("cache")
+
+    } else if (identical(cache, "session")) {
+      cache <<- session$cache
+
+    } else {
+      stop('`cache` must either be "app", "session", or a cache object with methods, `$get`, and `$set`.')
+    }
+  }
+
+  # The width and height of the plot to draw, given from sizePolicy. These
+  # values get filled by an observer below.
+  fitDims <- reactiveValues(width = NULL, height = NULL)
+
+  resizeObserver <- NULL
+  ensureResizeObserver <- function() {
+    if (!is.null(resizeObserver))
+      return()
+
+    # Given the actual width/height of the image in the browser, this gets the
+    # width/height from sizePolicy() and pushes those values into `fitDims`.
+    # It's done this way so that the `fitDims` only change (and cause
+    # invalidations) when the rendered image size changes, and not every time
+    # the browser's <img> tag changes size.
+    doResizeCheck <- function() {
+      width  <- session$clientData[[paste0('output_', outputName, '_width')]]
+      height <- session$clientData[[paste0('output_', outputName, '_height')]]
+
+      if (is.null(width)) width <- 0
+      if (is.null(height)) height <- 0
+
+      rect <- sizePolicy(c(width, height))
+      fitDims$width  <- rect[1]
+      fitDims$height <- rect[2]
+    }
+
+    # Run it once immediately, then set up the observer
+    isolate(doResizeCheck())
+
+    resizeObserver <<- observe(doResizeCheck())
+  }
+
+  # Vars to store session and output, so that they can be accessed from
+  # the plotObj() reactive.
+  session <- NULL
+  outputName <- NULL
+
+
+  drawReactive <- reactive(label = "plotObj", {
+    hybrid_chain(
+      # Depend on the user cache key, even though we don't use the value. When
+      # it changes, it can cause the drawReactive to re-execute. (Though
+      # drawReactive will not necessarily re-execute -- it must be called from
+      # renderFunc, which happens only if there's a cache miss.)
+      userCacheKey(),
+      function(userCacheKeyValue) {
+        # Get width/height, but don't depend on them.
+        isolate({
+          width  <- fitDims$width
+          height <- fitDims$height
+        })
+
+        pixelratio <- session$clientData$pixelratio %OR% 1
+
+        do.call("drawPlot", c(
+          list(
+            name = outputName,
+            session = session,
+            func = isolatedFunc,
+            width = width,
+            height = height,
+            pixelratio = pixelratio,
+            res = res
+          ),
+          args
+        ))
+      },
+      catch = function(reason) {
+        # Non-isolating read. A common reason for errors in plotting is because
+        # the dimensions are too small. By taking a dependency on width/height,
+        # we can try again if the plot output element changes size.
+        fitDims$width
+        fitDims$height
+
+        # Propagate the error
+        stop(reason)
+      }
+    )
+  })
+
+
+  # This function is the one that's returned from renderPlot(), and gets
+  # wrapped in an observer when the output value is assigned.
+  renderFunc <- function(shinysession, name, ...) {
+    outputName <<- name
+    session <<- shinysession
+    ensureCacheSetup()
+    ensureResizeObserver()
+
+    hybrid_chain(
+      # This use of the userCacheKey() sets up the reactive dependency that
+      # causes plot re-draw events. These may involve pulling from the cache,
+      # replaying a display list, or re-executing user code.
+      userCacheKey(),
+      function(userCacheKeyResult) {
+        width  <- fitDims$width
+        height <- fitDims$height
+        pixelratio <- session$clientData$pixelratio %OR% 1
+
+        key <- digest::digest(list(outputName, userCacheKeyResult, width, height, res, pixelratio), "xxhash64")
+
+        plotObj <- cache$get(key)
+
+        # First look in cache.
+        # Case 1. cache hit.
+        if (!is.key_missing(plotObj)) {
+          return(list(
+            cacheHit = TRUE,
+            key = key,
+            plotObj = plotObj,
+            width = width,
+            height = height,
+            pixelratio = pixelratio
+          ))
+        }
+
+        # If not in cache, hybrid_chain call to drawReactive
+        #
+        # Two more possible cases:
+        #   2. drawReactive will re-execute and return a plot that's the
+        #      correct size.
+        #   3. It will not re-execute, but it will return the previous value,
+        #      which is the wrong size. It will include a valid display list
+        #      which can be used by resizeSavedPlot.
+        hybrid_chain(
+          drawReactive(),
+          function(drawReactiveResult) {
+            # Pass along the key for caching in the next stage
+            list(
+              cacheHit = FALSE,
+              key = key,
+              plotObj = drawReactiveResult,
+              width = width,
+              height = height,
+              pixelratio = pixelratio
+            )
+          }
+        )
+      },
+      function(result) {
+        width      <- result$width
+        height     <- result$height
+        pixelratio <- result$pixelratio
+
+        # Three possibilities when we get here:
+        # 1. There was a cache hit. No need to set a value in the cache.
+        # 2. There was a cache miss, and the plotObj is already the correct
+        #    size (because drawReactive re-executed). In this case, we need
+        #    to cache it.
+        # 3. There was a cache miss, and the plotObj was not the corect size.
+        #    In this case, we need to replay the display list, and then cache
+        #    the result.
+        if (!result$cacheHit) {
+          # If the image is already the correct size, this just returns the
+          # object unchanged.
+          result$plotObj <- do.call("resizeSavedPlot", c(
+            list(
+              name,
+              shinysession,
+              result$plotObj,
+              width,
+              height,
+              pixelratio,
+              res
+            ),
+            args
+          ))
+
+          # Save a cached copy of the plotObj. The recorded displaylist for
+          # the plot can't be serialized and restored properly within the same
+          # R session, so we NULL it out before saving. (The image data and
+          # other metadata be saved and restored just fine.) Displaylists can
+          # also be very large (~1.5MB for a basic ggplot), and they would not
+          # be commonly used. Note that displaylist serialization was fixed in
+          # revision 74506 (2e6c669), and should be in R 3.6. A MemoryCache
+          # doesn't need to serialize objects, so it could actually save a
+          # display list, but for the reasons listed previously, it's
+          # generally not worth it.
+          # The plotResult is not the same as the recordedPlot (it is used to
+          # retrieve coordmap information for ggplot2 objects) but it is only
+          # used in conjunction with the recordedPlot, and we'll remove it
+          # because it can be quite large.
+          result$plotObj$plotResult <- NULL
+          result$plotObj$recordedPlot <- NULL
+          cache$set(result$key, result$plotObj)
+        }
+
+        img <- result$plotObj$img
+        # Replace exact pixel dimensions; instead, the max-height and
+        # max-width will be set to 100% from CSS.
+        img$class <- "shiny-scalable"
+        img$width  <- NULL
+        img$height <- NULL
+
+        img
+      }
+    )
+  }
+
+  # If renderPlot isn't going to adapt to the height of the div, then the
+  # div needs to adapt to the height of renderPlot. By default, plotOutput
+  # sets the height to 400px, so to make it adapt we need to override it
+  # with NULL.
+  outputFunc <- plotOutput
+  formals(outputFunc)['height'] <- list(NULL)
+
+  markRenderFunction(outputFunc, renderFunc, outputArgs = outputArgs)
+}
+
+
+#' Create a sizing function that grows at a given ratio
+#'
+#' Returns a function which takes a two-element vector representing an input
+#' width and height, and returns a two-element vector of width and height. The
+#' possible widths are the base width times the growthRate to any integer power.
+#' For example, with a base width of 500 and growth rate of 1.25, the possible
+#' widths include 320, 400, 500, 625, 782, and so on, both smaller and larger.
+#' Sizes are rounded up to the next pixel. Heights are computed the same way as
+#' widths.
+#'
+#' @param width,height Base width and height.
+#' @param growthRate Growth rate multiplier.
+#'
+#' @seealso This is to be used with \code{\link{renderCachedPlot}}.
+#'
+#' @examples
+#' f <- sizeGrowthRatio(500, 500, 1.25)
+#' f(c(400, 400))
+#' f(c(500, 500))
+#' f(c(530, 550))
+#' f(c(625, 700))
+#'
+#' @export
+sizeGrowthRatio <- function(width = 400, height = 400, growthRate = 1.2) {
+  round_dim_up <- function(x, base, rate) {
+    power <- ceiling(log(x / base, rate))
+    ceiling(base * rate^power)
+  }
+
+  function(dims) {
+    if (length(dims) != 2) {
+      stop("dims must be a vector with two numbers, for width and height.")
+    }
+    c(
+      round_dim_up(dims[1], width,  growthRate),
+      round_dim_up(dims[2], height, growthRate)
+    )
+  }
+}

R/render-table.R

@@ -81,143 +81,148 @@ renderTable <- function(expr, striped = FALSE, hover = FALSE,
 
   dots <- list(...)  ## used later (but defined here because of scoping)
 
-  renderFunc <- function(shinysession, name, ...) {
-    striped <- stripedWrapper()
-    hover <- hoverWrapper()
-    bordered <- borderedWrapper()
-    format <- c(striped = striped, hover = hover, bordered = bordered)
-    spacing <- spacingWrapper()
-    width <- widthWrapper()
-    align <- alignWrapper()
-    rownames <- rownamesWrapper()
-    colnames <- colnamesWrapper()
-    digits <- digitsWrapper()
-    na <- naWrapper()
+  createRenderFunction(
+    func,
+    function(data, session, name, ...) {
+      striped <- stripedWrapper()
+      hover <- hoverWrapper()
+      bordered <- borderedWrapper()
+      format <- c(striped = striped, hover = hover, bordered = bordered)
+      spacing <- spacingWrapper()
+      width <- widthWrapper()
+      align <- alignWrapper()
+      rownames <- rownamesWrapper()
+      colnames <- colnamesWrapper()
+      digits <- digitsWrapper()
+      na <- naWrapper()
 
-    spacing_choices <- c("s", "xs", "m", "l")
-    if (!(spacing %in% spacing_choices)) {
-      stop(paste("`spacing` must be one of",
-                 paste0("'", spacing_choices, "'", collapse=", ")))
-    }
+      spacing_choices <- c("s", "xs", "m", "l")
+      if (!(spacing %in% spacing_choices)) {
+        stop(paste("`spacing` must be one of",
+          paste0("'", spacing_choices, "'", collapse=", ")))
+      }
 
-    # For css styling
-    classNames <- paste0("table shiny-table",
-                         paste0(" table-", names(format)[format], collapse = "" ),
-                         paste0(" spacing-", spacing))
+      # For css styling
+      classNames <- paste0("table shiny-table",
+        paste0(" table-", names(format)[format], collapse = "" ),
+        paste0(" spacing-", spacing))
 
-    data <- func()
-    data <- as.data.frame(data)
+      data <- as.data.frame(data)
 
-    # Return NULL if no data is provided
-    if (is.null(data) ||
-        (is.data.frame(data) && nrow(data) == 0 && ncol(data) == 0))
-      return(NULL)
+      # Return NULL if no data is provided
+      if (is.null(data) ||
+          (is.data.frame(data) && nrow(data) == 0 && ncol(data) == 0))
+        return(NULL)
 
-    # Separate the ... args to pass to xtable() vs print.xtable()
-    xtable_argnames <- setdiff(names(formals(xtable)), c("x", "..."))
-    xtable_args <- dots[intersect(names(dots), xtable_argnames)]
-    non_xtable_args <- dots[setdiff(names(dots), xtable_argnames)]
+      # Separate the ... args to pass to xtable() vs print.xtable()
+      xtable_argnames <- setdiff(names(formals(xtable)), c("x", "..."))
+      xtable_args <- dots[intersect(names(dots), xtable_argnames)]
+      non_xtable_args <- dots[setdiff(names(dots), xtable_argnames)]
 
-    # By default, numbers are right-aligned and everything else is left-aligned.
-    defaultAlignment <- function(col) {
-      if (is.numeric(col)) "r" else "l"
-    }
+      # By default, numbers are right-aligned and everything else is left-aligned.
+      defaultAlignment <- function(col) {
+        if (is.numeric(col)) "r" else "l"
+      }
 
-    # Figure out column alignment
-    ## Case 1: default alignment
-    if (is.null(align) || align == "?") {
-      names <- defaultAlignment(attr(data, "row.names"))
-      cols <- paste(vapply(data, defaultAlignment, character(1)), collapse = "")
-      cols <- paste0(names, cols)
-    } else {
-      ## Case 2: user-specified alignment
-      num_cols <- if (rownames) nchar(align) else nchar(align)+1
-      valid <- !grepl("[^lcr\\?]", align)
-      if (num_cols == ncol(data)+1 && valid) {
-        cols <- if (rownames) align else paste0("r", align)
-        defaults <- grep("\\?", strsplit(cols,"")[[1]])
-        if (length(defaults) != 0) {
-          vals <- vapply(data[,defaults-1], defaultAlignment, character(1))
-          for (i in seq_len(length(defaults))) {
-            substr(cols, defaults[i], defaults[i]) <- vals[i]
-          }
-        }
-      } else if (nchar(align) == 1 && valid) {
-        cols <- paste0(rep(align, ncol(data)+1), collapse="")
+      # Figure out column alignment
+      ## Case 1: default alignment
+      if (is.null(align) || align == "?") {
+        names <- defaultAlignment(attr(data, "row.names"))
+        cols <- paste(vapply(data, defaultAlignment, character(1)), collapse = "")
+        cols <- paste0(names, cols)
       } else {
-        stop("`align` must contain only the characters `l`, `c`, `r` and/or `?` and",
-             "have length either equal to 1 or to the total number of columns")
+        ## Case 2: user-specified alignment
+        num_cols <- if (rownames) nchar(align) else nchar(align)+1
+        valid <- !grepl("[^lcr\\?]", align)
+        if (num_cols == ncol(data)+1 && valid) {
+          cols <- if (rownames) align else paste0("r", align)
+          defaults <- grep("\\?", strsplit(cols,"")[[1]])
+          if (length(defaults) != 0) {
+            vals <- vapply(data[,defaults-1], defaultAlignment, character(1))
+            for (i in seq_len(length(defaults))) {
+              substr(cols, defaults[i], defaults[i]) <- vals[i]
+            }
+          }
+        } else if (nchar(align) == 1 && valid) {
+          cols <- paste0(rep(align, ncol(data)+1), collapse="")
+        } else {
+          stop("`align` must contain only the characters `l`, `c`, `r` and/or `?` and",
+            "have length either equal to 1 or to the total number of columns")
+        }
       }
-    }
 
-    # Call xtable with its (updated) args
-    xtable_args <- c(xtable_args, align = cols, digits = digits)
-    xtable_res <- do.call(xtable, c(list(data), xtable_args))
+      # Call xtable with its (updated) args
+      xtable_args <- c(xtable_args, align = cols, digits = digits)
+      xtable_res <- do.call(xtable, c(list(data), xtable_args))
 
-    # Set up print args
-    print_args <- list(
-      x = xtable_res,
-      type = 'html',
-      include.rownames = {
-        if ("include.rownames" %in% names(dots)) dots$include.rownames
-        else rownames
-      },
-      include.colnames = {
-        if ("include.colnames" %in% names(dots)) dots$include.colnames
-        else colnames
-      },
-      NA.string = {
-        if ("NA.string" %in% names(dots)) dots$NA.string
-        else na
-      },
-      html.table.attributes =
-        paste0({
-          if ("html.table.attributes" %in% names(dots)) dots$html.table.attributes
-          else ""
-        }, " ",
-        "class = '", htmlEscape(classNames, TRUE), "' ",
-        "style = 'width:", validateCssUnit(width), ";'"))
+      # Set up print args
+      print_args <- list(
+        x = xtable_res,
+        type = 'html',
+        include.rownames = {
+          if ("include.rownames" %in% names(dots)) dots$include.rownames
+          else rownames
+        },
+        include.colnames = {
+          if ("include.colnames" %in% names(dots)) dots$include.colnames
+          else colnames
+        },
+        NA.string = {
+          if ("NA.string" %in% names(dots)) dots$NA.string
+          else na
+        },
+        html.table.attributes =
+          paste0({
+            if ("html.table.attributes" %in% names(dots)) dots$html.table.attributes
+            else ""
+          }, " ",
+            "class = '", htmlEscape(classNames, TRUE), "' ",
+            "style = 'width:", validateCssUnit(width), ";'"),
+        comment = {
+          if ("comment" %in% names(dots)) dots$comment
+          else FALSE
+        }
+      )
 
-    print_args <- c(print_args, non_xtable_args)
-    print_args <- print_args[unique(names(print_args))]
+      print_args <- c(print_args, non_xtable_args)
+      print_args <- print_args[unique(names(print_args))]
 
-    # Capture the raw html table returned by print.xtable(), and store it in
-    # a variable for further processing
-    tab <- paste(utils::capture.output(do.call(print, print_args)),collapse = "\n")
+      # Capture the raw html table returned by print.xtable(), and store it in
+      # a variable for further processing
+      tab <- paste(utils::capture.output(do.call(print, print_args)),collapse = "\n")
 
-    # Add extra class to cells with NA value, to be able to style them separately
-    tab <- gsub(paste(">", na, "<"), paste(" class='NA'>", na, "<"), tab)
+      # Add extra class to cells with NA value, to be able to style them separately
+      tab <- gsub(paste(">", na, "<"), paste(" class='NA'>", na, "<"), tab)
 
-    # All further processing concerns the table headers, so we don't need to run
-    # any of this if colnames=FALSE
-    if (colnames) {
-      # Make sure that the final html table has a proper header (not included
-      # in the print.xtable() default)
-      tab <- sub("<tr>", "<thead> <tr>", tab)
-      tab <- sub("</tr>", "</tr> </thead> <tbody>", tab)
-      tab <- sub("</table>$", "</tbody> </table>", tab)
+      # All further processing concerns the table headers, so we don't need to run
+      # any of this if colnames=FALSE
+      if (colnames) {
+        # Make sure that the final html table has a proper header (not included
+        # in the print.xtable() default)
+        tab <- sub("<tr>", "<thead> <tr>", tab)
+        tab <- sub("</tr>", "</tr> </thead> <tbody>", tab)
+        tab <- sub("</table>$", "</tbody> </table>", tab)
 
-      # Update the `cols` string (which stores the alignment of each column) so
-      # that it only includes the alignment for the table variables (and not
-      # for the row.names)
-      cols <- if (rownames) cols else substr(cols, 2, nchar(cols))
+        # Update the `cols` string (which stores the alignment of each column) so
+        # that it only includes the alignment for the table variables (and not
+        # for the row.names)
+        cols <- if (rownames) cols else substr(cols, 2, nchar(cols))
 
-      # Create a vector whose i-th entry corresponds to the i-th table variable
-      # alignment (substituting "l" by "left", "c" by "center" and "r" by "right")
-      cols <- strsplit(cols, "")[[1]]
-      cols[cols == "l"] <- "left"
-      cols[cols == "r"] <- "right"
-      cols[cols == "c"] <- "center"
+        # Create a vector whose i-th entry corresponds to the i-th table variable
+        # alignment (substituting "l" by "left", "c" by "center" and "r" by "right")
+        cols <- strsplit(cols, "")[[1]]
+        cols[cols == "l"] <- "left"
+        cols[cols == "r"] <- "right"
+        cols[cols == "c"] <- "center"
 
-      # Align each header accordingly (this guarantees that each header and its
-      # corresponding column have the same alignment)
-      for (i in seq_len(length(cols))) {
-        tab <- sub("<th>", paste0("<th style='text-align: ", cols[i], ";'>"), tab)
+        # Align each header accordingly (this guarantees that each header and its
+        # corresponding column have the same alignment)
+        for (i in seq_len(length(cols))) {
+          tab <- sub("<th>", paste0("<th style='text-align: ", cols[i], ";'>"), tab)
+        }
       }
-    }
-    return(tab)
-  }
-
-  # Main render function
-  markRenderFunction(tableOutput, renderFunc, outputArgs = outputArgs)
+      return(tab)
+    },
+    tableOutput, outputArgs
+  )
 }

R/serializers.R

@@ -1,3 +1,22 @@
+#' Add a function for serializing an input before bookmarking application state
+#'
+#' @param inputId Name of the input value.
+#' @param fun A function that takes the input value and returns a modified
+#'   value. The returned value will be used for the test snapshot.
+#' @param session A Shiny session object.
+#'
+#' @keywords internal
+#' @export
+setSerializer <- function(inputId, fun, session = getDefaultReactiveDomain()) {
+  if (is.null(session)) {
+    stop("setSerializer() needs a session object.")
+  }
+
+  input_impl <- .subset2(session$input, "impl")
+  input_impl$setMeta(inputId, "shiny.serializer", fun)
+}
+
+
 # For most types of values, simply return the value unchanged.
 serializerDefault <- function(value, stateDir) {
   value
@@ -58,12 +77,12 @@ serializeReactiveValues <- function(values, exclude, stateDir = NULL) {
 
     # Get the serializer function for this input value. If none specified, use
     # the default.
-    serializer <- impl$getMeta(name, "shiny.serializer")
-    if (is.null(serializer))
-      serializer <- serializerDefault
+    serializer_fun <- impl$getMeta(name, "shiny.serializer")
+    if (is.null(serializer_fun))
+      serializer_fun <- serializerDefault
 
     # Apply serializer function.
-    serializer(val, stateDir)
+    serializer_fun(val, stateDir)
   })
 
   # Filter out any values that were marked as unserializable.

R/server-input-handlers.R

@@ -71,6 +71,63 @@ removeInputHandler <- function(type){
   inputHandlers$remove(type)
 }
 
+
+# Apply input handler to a single input value
+applyInputHandler <- function(name, val, shinysession) {
+  splitName <- strsplit(name, ':')[[1]]
+  if (length(splitName) > 1) {
+    if (!inputHandlers$containsKey(splitName[[2]])) {
+      # No input handler registered for this type
+      stop("No handler registered for type ", name)
+    }
+
+    inputName <- splitName[[1]]
+
+    # Get the function for processing this type of input
+    inputHandler <- inputHandlers$get(splitName[[2]])
+
+    return(inputHandler(val, shinysession, inputName))
+
+  } else if (is.list(val) && is.null(names(val))) {
+    return(unlist(val, recursive = TRUE))
+  } else {
+    return(val)
+  }
+}
+
+#' Apply input handlers to raw input values
+#'
+#' The purpose of this function is to make it possible for external packages to
+#' test Shiny inputs. It takes a named list of raw input values, applies input
+#' handlers to those values, and then returns a named list of the processed
+#' values.
+#'
+#' The raw input values should be in a named list. Some values may have names
+#' like \code{"x:shiny.date"}. This function would apply the \code{"shiny.date"}
+#' input handler to the value, and then rename the result to \code{"x"}, in the
+#' output.
+#'
+#' @param inputs A named list of input values.
+#' @param shinysession A Shiny session object.
+#'
+#' @seealso registerInputHandler
+#' @keywords internal
+applyInputHandlers <- function(inputs, shinysession = getDefaultReactiveDomain()) {
+  inputs <- mapply(applyInputHandler, names(inputs), inputs,
+                   MoreArgs = list(shinysession = shinysession),
+                   SIMPLIFY = FALSE)
+
+  # Convert names like "button1:shiny.action" to "button1"
+  names(inputs) <- vapply(
+    names(inputs),
+    function(name) { strsplit(name, ":")[[1]][1] },
+    FUN.VALUE = character(1)
+  )
+
+  inputs
+}
+
+
 # Takes a list-of-lists and returns a matrix. The lists
 # must all be the same length. NULL is replaced by NA.
 registerInputHandler("shiny.matrix", function(data, ...) {
@@ -85,13 +142,14 @@ registerInputHandler("shiny.matrix", function(data, ...) {
   return(m)
 })
 
+
 registerInputHandler("shiny.number", function(val, ...){
   ifelse(is.null(val), NA, val)
 })
 
 registerInputHandler("shiny.password", function(val, shinysession, name) {
   # Mark passwords as not serializable
-  .subset2(shinysession$input, "impl")$setMeta(name, "shiny.serializer", serializerUnserializable)
+  setSerializer(name, serializerUnserializable)
   val
 })
 
@@ -139,14 +197,45 @@ registerInputHandler("shiny.file", function(val, shinysession, name) {
   # The data will be a named list of lists; convert to a data frame.
   val <- as.data.frame(lapply(val, unlist), stringsAsFactors = FALSE)
 
-  # Make sure that the paths don't go up the directory tree, for security
-  # reasons.
-  if (any(grepl("..", val$datapath, fixed = TRUE))) {
-    stop("Invalid '..' found in file input path.")
+  # `val$datapath` should be a filename without a path, for security reasons.
+  if (basename(val$datapath) != val$datapath) {
+    stop("Invalid '/' found in file input path.")
   }
 
   # Prepend the persistent dir
-  val$datapath <- file.path(getCurrentRestoreContext()$dir, val$datapath)
+  oldfile <- file.path(getCurrentRestoreContext()$dir, val$datapath)
+
+  # Copy the original file to a new temp dir, so that a restored session can't
+  # modify the original.
+  newdir <- file.path(tempdir(), createUniqueId(12))
+  dir.create(newdir)
+  val$datapath <- file.path(newdir, val$datapath)
+  file.copy(oldfile, val$datapath)
+
+  # Need to mark this input value with the correct serializer. When a file is
+  # uploaded the usual way (instead of being restored), this occurs in
+  # session$`@uploadEnd`.
+  setSerializer(name, serializerFileInput)
+
+  snapshotPreprocessInput(name, snapshotPreprocessorFileInput)
 
   val
 })
+
+
+# to be used with !!!answer
+registerInputHandler("shiny.symbolList", function(val, ...) {
+  if (is.null(val)) {
+    list()
+  } else {
+    lapply(val, as.symbol)
+  }
+})
+# to be used with !!answer
+registerInputHandler("shiny.symbol", function(val, ...) {
+  if (is.null(val) || identical(val, "")) {
+    NULL
+  } else {
+    as.symbol(val)
+  }
+})

R/server.R

@@ -1,6 +1,7 @@
 #' @include server-input-handlers.R
 
 appsByToken <- Map$new()
+appsNeedingFlush <- Map$new()
 
 # Provide a character representation of the WS that can be used
 # as a key in a Map.
@@ -34,7 +35,7 @@ registerClient <- function(client) {
 #' JavaScript/CSS files available to their components.
 #'
 #' @param prefix The URL prefix (without slashes). Valid characters are a-z,
-#'   A-Z, 0-9, hyphen, period, and underscore; and must begin with a-z or A-Z.
+#'   A-Z, 0-9, hyphen, period, and underscore.
 #'   For example, a value of 'foo' means that any request paths that begin with
 #'   '/foo' will be mapped to the given directory.
 #' @param directoryPath The directory that contains the static resources to be
@@ -52,21 +53,23 @@ registerClient <- function(client) {
 #' @export
 addResourcePath <- function(prefix, directoryPath) {
   prefix <- prefix[1]
-  if (!grepl('^[a-z][a-z0-9\\-_.]*$', prefix, ignore.case=TRUE, perl=TRUE)) {
+  if (!grepl('^[a-z0-9\\-_][a-z0-9\\-_.]*$', prefix, ignore.case = TRUE, perl = TRUE)) {
     stop("addResourcePath called with invalid prefix; please see documentation")
   }
-
   if (prefix %in% c('shared')) {
     stop("addResourcePath called with the reserved prefix '", prefix, "'; ",
          "please use a different prefix")
   }
-
-  directoryPath <- normalizePath(directoryPath, mustWork=TRUE)
-
-  existing <- .globals$resources[[prefix]]
-
-  .globals$resources[[prefix]] <- list(directoryPath=directoryPath,
-                                       func=staticHandler(directoryPath))
+  normalizedPath <- tryCatch(normalizePath(directoryPath, mustWork = TRUE),
+    error = function(e) {
+      stop("Couldn't normalize path in `addResourcePath`, with arguments: ",
+        "`prefix` = '", prefix, "'; `directoryPath` = '" , directoryPath, "'")
+    }
+  )
+  .globals$resources[[prefix]] <- list(
+    directoryPath = normalizedPath,
+    func = staticHandler(normalizedPath)
+  )
 }
 
 resourcePathHandler <- function(req) {
@@ -155,7 +158,7 @@ decodeMessage <- function(data) {
     # Treat message as UTF-8
     charData <- rawToChar(data)
     Encoding(charData) <- 'UTF-8'
-    return(jsonlite::fromJSON(charData, simplifyVector=FALSE))
+    return(safeFromJSON(charData, simplifyVector=FALSE))
   }
 
   i <- 5
@@ -218,14 +221,15 @@ createAppHandlers <- function(httpHandlers, serverFuncSource) {
           if (is.character(msg))
             msg <- charToRaw(msg)
 
-          if (isTRUE(getOption('shiny.trace'))) {
+          traceOption <- getOption('shiny.trace', FALSE)
+          if (isTRUE(traceOption) || traceOption == "recv") {
             if (binary)
               message("RECV ", '$$binary data$$')
             else
               message("RECV ", rawToChar(msg))
           }
 
-          if (identical(charToRaw("\003\xe9"), msg))
+          if (isEmptyMessage(msg))
             return()
 
           msg <- decodeMessage(msg)
@@ -242,125 +246,87 @@ createAppHandlers <- function(httpHandlers, serverFuncSource) {
             } else {
               # If there's bookmarked state, save it on the session object
               shinysession$restoreContext <- RestoreContext$new(msg$data$.clientdata_url_search)
+              shinysession$createBookmarkObservers()
             }
           }
 
-          withRestoreContext(shinysession$restoreContext, {
 
-            unpackInput <- function(name, val) {
-              splitName <- strsplit(name, ':')[[1]]
-              if (length(splitName) > 1) {
-                if (!inputHandlers$containsKey(splitName[[2]])) {
-                  # No input handler registered for this type
-                  stop("No handler registered for type ", name)
+          msg$data <- applyInputHandlers(msg$data)
+
+          switch(
+            msg$method,
+            init = {
+
+              serverFunc <- withReactiveDomain(NULL, serverFuncSource())
+              if (!identicalFunctionBodies(serverFunc, appvars$server)) {
+                appvars$server <- serverFunc
+                if (!is.null(appvars$server))
+                {
+                  # Tag this function as the Shiny server function. A debugger may use this
+                  # tag to give this function special treatment.
+                  # It's very important that it's appvars$server itself and NOT a copy that
+                  # is invoked, otherwise new breakpoints won't be picked up.
+                  attr(appvars$server, "shinyServerFunction") <- TRUE
+                  registerDebugHook("server", appvars, "Server Function")
                 }
-
-                inputName <- splitName[[1]]
-
-                # Get the function for processing this type of input
-                inputHandler <- inputHandlers$get(splitName[[2]])
-
-                return(inputHandler(val, shinysession, inputName))
-
-              } else if (is.list(val) && is.null(names(val))) {
-                return(unlist(val, recursive = TRUE))
-              } else {
-                return(val)
               }
-            }
 
-            msg$data <- mapply(unpackInput, names(msg$data), msg$data,
-                               SIMPLIFY = FALSE)
+              # Check for switching into/out of showcase mode
+              if (.globals$showcaseOverride &&
+                  exists(".clientdata_url_search", where = msg$data)) {
+                mode <- showcaseModeOfQuerystring(msg$data$.clientdata_url_search)
+                if (!is.null(mode))
+                  shinysession$setShowcase(mode)
+              }
 
-            # Convert names like "button1:shiny.action" to "button1"
-            names(msg$data) <- vapply(
-              names(msg$data),
-              function(name) { strsplit(name, ":")[[1]][1] },
-              FUN.VALUE = character(1)
-            )
+              # In shinysession$createBookmarkObservers() above, observers may be
+              # created, which puts the shiny session in busyCount > 0 state. That
+              # prevents the manageInputs here from taking immediate effect, by
+              # default. The manageInputs here needs to take effect though, because
+              # otherwise the bookmark observers won't find the clientData they are
+              # looking for. So use `now = TRUE` to force the changes to be
+              # immediate.
+              #
+              # FIXME: break createBookmarkObservers into two separate steps, one
+              # before and one after manageInputs, and put the observer creation
+              # in the latter. Then add an assertion that busyCount == 0L when
+              # this manageInputs is called.
+              shinysession$manageInputs(msg$data, now = TRUE)
 
+              # The client tells us what singletons were rendered into
+              # the initial page
+              if (!is.null(msg$data$.clientdata_singletons)) {
+                shinysession$singletons <- strsplit(
+                  msg$data$.clientdata_singletons, ',')[[1]]
+              }
 
-            switch(
-              msg$method,
-              init = {
+              local({
+                args <- argsForServerFunc(serverFunc, shinysession)
 
-                serverFunc <- withReactiveDomain(NULL, serverFuncSource())
-                if (!identicalFunctionBodies(serverFunc, appvars$server)) {
-                  appvars$server <- serverFunc
-                  if (!is.null(appvars$server))
-                  {
-                    # Tag this function as the Shiny server function. A debugger may use this
-                    # tag to give this function special treatment.
-                    # It's very important that it's appvars$server itself and NOT a copy that
-                    # is invoked, otherwise new breakpoints won't be picked up.
-                    attr(appvars$server, "shinyServerFunction") <- TRUE
-                    registerDebugHook("server", appvars, "Server Function")
-                  }
-                }
-
-                # Check for switching into/out of showcase mode
-                if (.globals$showcaseOverride &&
-                    exists(".clientdata_url_search", where = msg$data)) {
-                  mode <- showcaseModeOfQuerystring(msg$data$.clientdata_url_search)
-                  if (!is.null(mode))
-                    shinysession$setShowcase(mode)
-                }
-
-                shinysession$manageInputs(msg$data)
-
-                # The client tells us what singletons were rendered into
-                # the initial page
-                if (!is.null(msg$data$.clientdata_singletons)) {
-                  shinysession$singletons <- strsplit(
-                    msg$data$.clientdata_singletons, ',')[[1]]
-                }
-
-                local({
-                  args <- argsForServerFunc(serverFunc, shinysession)
-
-                  withReactiveDomain(shinysession, {
-                    do.call(
-                      # No corresponding ..stacktraceoff; the server func is pure
-                      # user code
-                      wrapFunctionLabel(appvars$server, "server",
-                        ..stacktraceon = TRUE
-                      ),
-                      args
-                    )
-                  })
+                withReactiveDomain(shinysession, {
+                  do.call(
+                    # No corresponding ..stacktraceoff; the server func is pure
+                    # user code
+                    wrapFunctionLabel(appvars$server, "server",
+                      ..stacktraceon = TRUE
+                    ),
+                    args
+                  )
                 })
-              },
-              update = {
-                shinysession$manageInputs(msg$data)
-              },
-              shinysession$dispatch(msg)
-            )
-            shinysession$manageHiddenOutputs()
+              })
+            },
+            update = {
+              shinysession$manageInputs(msg$data)
+            },
+            shinysession$dispatch(msg)
+          )
+          # The HTTP_GUID, if it exists, is for Shiny Server reporting purposes
+          shinysession$startTiming(ws$request$HTTP_GUID)
+          shinysession$requestFlush()
 
-            if (exists(".shiny__stdout", globalenv()) &&
-                exists("HTTP_GUID", ws$request)) {
-              # safe to assume we're in shiny-server
-              shiny_stdout <- get(".shiny__stdout", globalenv())
-
-              # eNter a flushReact
-              writeLines(paste("_n_flushReact ", get("HTTP_GUID", ws$request),
-                " @ ", sprintf("%.3f", as.numeric(Sys.time())),
-                sep=""), con=shiny_stdout)
-              flush(shiny_stdout)
-
-              flushReact()
-
-              # eXit a flushReact
-              writeLines(paste("_x_flushReact ", get("HTTP_GUID", ws$request),
-                " @ ", sprintf("%.3f", as.numeric(Sys.time())),
-                sep=""), con=shiny_stdout)
-              flush(shiny_stdout)
-            } else {
-              flushReact()
-            }
-
-            flushAllSessions()
-          })
+          # Make httpuv return control to Shiny quickly, instead of waiting
+          # for the usual timeout
+          httpuv::interrupt()
         })
       }
       ws$onMessage(function(binary, msg) {
@@ -371,6 +337,7 @@ createAppHandlers <- function(httpHandlers, serverFuncSource) {
       ws$onClose(function() {
         shinysession$wsClosed()
         appsByToken$remove(shinysession$token)
+        appsNeedingFlush$remove(shinysession$token)
       })
 
       return(TRUE)
@@ -400,9 +367,9 @@ argsForServerFunc <- function(serverFunc, session) {
 }
 
 getEffectiveBody <- function(func) {
-  # Note: NULL values are OK. isS4(NULL) returns FALSE, body(NULL)
-  # returns NULL.
-  if (isS4(func) && class(func) == "functionWithTrace")
+  if (is.null(func))
+    NULL
+  else if (isS4(func) && class(func) == "functionWithTrace")
     body(func@original)
   else
     body(func)
@@ -452,7 +419,10 @@ startApp <- function(appObj, port, host, quiet) {
 
   if (is.numeric(port) || is.integer(port)) {
     if (!quiet) {
-      message('\n', 'Listening on http://', host, ':', port)
+      hostString <- host
+      if (httpuv::ipFamily(host) == 6L)
+        hostString <- paste0("[", hostString, "]")
+      message('\n', 'Listening on http://', hostString, ':', port)
     }
     return(startServer(host, port, handlerManager$createHttpuvApp()))
   } else if (is.character(port)) {
@@ -473,25 +443,38 @@ startApp <- function(appObj, port, host, quiet) {
 # Run an application that was created by \code{\link{startApp}}. This
 # function should normally be called in a \code{while(TRUE)} loop.
 serviceApp <- function() {
-  if (timerCallbacks$executeElapsed()) {
-    for (shinysession in appsByToken$values()) {
-      shinysession$manageHiddenOutputs()
-    }
+  timerCallbacks$executeElapsed()
 
-    flushReact()
-    flushAllSessions()
-  }
+  flushReact()
+  flushPendingSessions()
 
   # If this R session is interactive, then call service() with a short timeout
   # to keep the session responsive to user input
   maxTimeout <- ifelse(interactive(), 100, 1000)
 
-  timeout <- max(1, min(maxTimeout, timerCallbacks$timeToNextEvent()))
+  timeout <- max(1, min(maxTimeout, timerCallbacks$timeToNextEvent(), later::next_op_secs()))
   service(timeout)
+
+  flushReact()
+  flushPendingSessions()
 }
 
 .shinyServerMinVersion <- '0.3.4'
 
+# Global flag that's TRUE whenever we're inside of the scope of a call to runApp
+.globals$running <- FALSE
+
+#' Check whether a Shiny application is running
+#'
+#' This function tests whether a Shiny application is currently running.
+#'
+#' @return \code{TRUE} if a Shiny application is currently running. Otherwise,
+#'   \code{FALSE}.
+#' @export
+isRunning <- function() {
+  .globals$running
+}
+
 #' Run Shiny Application
 #'
 #' Runs a Shiny application. This function normally does not return; interrupt R
@@ -533,6 +516,9 @@ serviceApp <- function() {
 #'   application. If set to \code{"normal"}, displays the application normally.
 #'   Defaults to \code{"auto"}, which displays the application in the mode given
 #'   in its \code{DESCRIPTION} file, if any.
+#' @param test.mode Should the application be launched in test mode? This is
+#'   only used for recording or running automated tests. Defaults to the
+#'   \code{shiny.testmode} option, or FALSE if the option is not set.
 #'
 #' @examples
 #' \dontrun{
@@ -545,6 +531,8 @@ serviceApp <- function() {
 #'
 #' ## Only run this example in interactive R sessions
 #' if (interactive()) {
+#'   options(device.ask.default = FALSE)
+#'
 #'   # Apps can be run without a server.r and ui.r file
 #'   runApp(list(
 #'     ui = bootstrapPage(
@@ -576,25 +564,86 @@ runApp <- function(appDir=getwd(),
                                             interactive()),
                    host=getOption('shiny.host', '127.0.0.1'),
                    workerId="", quiet=FALSE,
-                   display.mode=c("auto", "normal", "showcase")) {
+                   display.mode=c("auto", "normal", "showcase"),
+                   test.mode=getOption('shiny.testmode', FALSE)) {
   on.exit({
     handlerManager$clear()
   }, add = TRUE)
 
-  # Enable per-app Shiny options
+  if (.globals$running) {
+    stop("Can't call `runApp()` from within `runApp()`. If your ",
+         "application code contains `runApp()`, please remove it.")
+  }
+  .globals$running <- TRUE
+  on.exit({
+    .globals$running <- FALSE
+  }, add = TRUE)
+
+  # Enable per-app Shiny options, for shinyOptions() and getShinyOption().
   oldOptionSet <- .globals$options
   on.exit({
     .globals$options <- oldOptionSet
   },add = TRUE)
 
-  if (is.null(host) || is.na(host))
-    host <- '0.0.0.0'
+  # A unique identifier associated with this run of this application. It is
+  # shared across sessions.
+  shinyOptions(appToken = createUniqueId(8))
 
   # Make warnings print immediately
   # Set pool.scheduler to support pool package
-  ops <- options(warn = 1, pool.scheduler = scheduleTask)
+  ops <- options(
+    # Raise warn level to 1, but don't lower it
+    warn = max(1, getOption("warn", default = 1)),
+    pool.scheduler = scheduleTask
+  )
   on.exit(options(ops), add = TRUE)
 
+  # Set up default cache for app.
+  if (is.null(getShinyOption("cache"))) {
+    shinyOptions(cache = MemoryCache$new())
+  }
+
+  appParts <- as.shiny.appobj(appDir)
+
+  # The lines below set some of the app's running options, which
+  # can be:
+  #   - left unspeficied (in which case the arguments' default
+  #     values from `runApp` kick in);
+  #   - passed through `shinyApp`
+  #   - passed through `runApp` (this function)
+  #   - passed through both `shinyApp` and `runApp` (the latter
+  #     takes precedence)
+  #
+  # Matrix of possibilities:
+  # | IN shinyApp | IN runApp | result       | check                                                                                                                                  |
+  # |-------------|-----------|--------------|----------------------------------------------------------------------------------------------------------------------------------------|
+  # | no          | no        | use defaults | exhaust all possibilities: if it's missing (runApp does not specify); THEN if it's not in shinyApp appParts$options; THEN use defaults |
+  # | yes         | no        | use shinyApp | if it's missing (runApp does not specify); THEN if it's in shinyApp appParts$options; THEN use shinyApp                                |
+  # | no          | yes       | use runApp   | if it's not missing (runApp specifies), use those                                                                                      |
+  # | yes         | yes       | use runApp   | if it's not missing (runApp specifies), use those                                                                                      |
+  #
+  # I tried to make this as compact and intuitive as possible,
+  # given that there are four distinct possibilities to check
+  appOps <- appParts$options
+  findVal <- function(arg, default) {
+    if (arg %in% names(appOps)) appOps[[arg]] else default
+  }
+
+  if (missing(port))
+    port <- findVal("port", port)
+  if (missing(launch.browser))
+    launch.browser <- findVal("launch.browser", launch.browser)
+  if (missing(host))
+    host <- findVal("host", host)
+  if (missing(quiet))
+    quiet <- findVal("quiet", quiet)
+  if (missing(display.mode))
+    display.mode <- findVal("display.mode", display.mode)
+  if (missing(test.mode))
+    test.mode <- findVal("test.mode", test.mode)
+
+  if (is.null(host) || is.na(host)) host <- '0.0.0.0'
+
   workerId(workerId)
 
   if (inShinyServer()) {
@@ -614,6 +663,11 @@ runApp <- function(appDir=getwd(),
   # the display.mode parameter. The latter takes precedence.
   setShowcaseDefault(0)
 
+  .globals$testMode <- test.mode
+  if (test.mode) {
+    message("Running application in test mode.")
+  }
+
   # If appDir specifies a path, and display mode is specified in the
   # DESCRIPTION file at that path, apply it here.
   if (is.character(appDir)) {
@@ -685,7 +739,8 @@ runApp <- function(appDir=getwd(),
           port <- p_randomInt(3000, 8000)
           # Reject ports in this range that are considered unsafe by Chrome
           # http://superuser.com/questions/188058/which-ports-are-considered-unsafe-on-chrome
-          if (!port %in% c(3659, 4045, 6000, 6665:6669)) {
+          # https://github.com/rstudio/shiny/issues/1784
+          if (!port %in% c(3659, 4045, 6000, 6665:6669, 6697)) {
             break
           }
         }
@@ -701,17 +756,22 @@ runApp <- function(appDir=getwd(),
     }
   }
 
-  appParts <- as.shiny.appobj(appDir)
+  # Invoke user-defined onStop callbacks, before the application's internal
+  # onStop callbacks.
+  on.exit({
+    .globals$onStopCallbacks$invoke()
+    .globals$onStopCallbacks <- Callbacks$new()
+  }, add = TRUE)
 
   # Extract appOptions (which is a list) and store them as shinyOptions, for
   # this app. (This is the only place we have to store settings that are
   # accessible both the UI and server portion of the app.)
   unconsumeAppOptions(appParts$appOptions)
 
-  # Set up the onEnd before we call onStart, so that it gets called even if an
+  # Set up the onStop before we call onStart, so that it gets called even if an
   # error happens in onStart.
-  if (!is.null(appParts$onEnd))
-    on.exit(appParts$onEnd(), add = TRUE)
+  if (!is.null(appParts$onStop))
+    on.exit(appParts$onStop(), add = TRUE)
   if (!is.null(appParts$onStart))
     appParts$onStart()
 
@@ -722,8 +782,17 @@ runApp <- function(appDir=getwd(),
   }, add = TRUE)
 
   if (!is.character(port)) {
-    # http://0.0.0.0/ doesn't work on QtWebKit (i.e. RStudio viewer)
-    browseHost <- if (identical(host, "0.0.0.0")) "127.0.0.1" else host
+    browseHost <- host
+    if (identical(host, "0.0.0.0")) {
+      # http://0.0.0.0/ doesn't work on QtWebKit (i.e. RStudio viewer)
+      browseHost <- "127.0.0.1"
+    } else if (identical(host, "::")) {
+      browseHost <- "::1"
+    }
+
+    if (httpuv::ipFamily(browseHost) == 6L) {
+      browseHost <- paste0("[", browseHost, "]")
+    }
 
     appUrl <- paste("http://", browseHost, ":", port, sep="")
     if (is.function(launch.browser))
@@ -746,12 +815,12 @@ runApp <- function(appDir=getwd(),
   # Top-level ..stacktraceoff..; matches with ..stacktraceon in observe(),
   # reactive(), Callbacks$invoke(), and others
   ..stacktraceoff..(
-    captureStackTraces(
+    captureStackTraces({
       while (!.globals$stopped) {
-        serviceApp()
+        ..stacktracefloor..(serviceApp())
         Sys.sleep(0.001)
       }
-    )
+    })
   )
 
   if (isTRUE(.globals$reterror)) {
@@ -989,3 +1058,9 @@ browserViewer <- function(browser = getOption("browser")) {
 inShinyServer <- function() {
   nzchar(Sys.getenv('SHINY_PORT'))
 }
+
+# This check was moved out of the main function body because of an issue with
+# the RStudio debugger. (#1474)
+isEmptyMessage <- function(msg) {
+  identical(charToRaw("\003\xe9"), msg)
+}

R/shinyui.R

@@ -14,7 +14,7 @@ NULL
 #' # now we can just write "static" content without withMathJax()
 #' div("more math here $$\\sqrt{2}$$")
 withMathJax <- function(...) {
-  path <- 'https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'
+  path <- 'https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'
   tagList(
     tags$head(
       singleton(tags$script(src = path, type = 'text/javascript'))
@@ -24,7 +24,7 @@ withMathJax <- function(...) {
   )
 }
 
-renderPage <- function(ui, connection, showcase=0) {
+renderPage <- function(ui, connection, showcase=0, testMode=FALSE) {
   # If the ui is a NOT complete document (created by htmlTemplate()), then do some
   # preprocessing and make sure it's a complete document.
   if (!inherits(ui, "html_document")) {
@@ -45,11 +45,18 @@ renderPage <- function(ui, connection, showcase=0) {
   shiny_deps <- list(
     htmlDependency("json2", "2014.02.04", c(href="shared"), script = "json2-min.js"),
     htmlDependency("jquery", "1.12.4", c(href="shared"), script = "jquery.min.js"),
-    htmlDependency("babel-polyfill", "6.7.2", c(href="shared"), script = "babel-polyfill.min.js"),
     htmlDependency("shiny", utils::packageVersion("shiny"), c(href="shared"),
       script = if (getOption("shiny.minified", TRUE)) "shiny.min.js" else "shiny.js",
       stylesheet = "shiny.css")
   )
+
+  if (testMode) {
+    # Add code injection listener if in test mode
+    shiny_deps[[length(shiny_deps) + 1]] <-
+      htmlDependency("shiny-testmode", utils::packageVersion("shiny"),
+        c(href="shared"), script = "shiny-testmode.js")
+  }
+
   html <- renderDocument(ui, shiny_deps, processDep = createWebDependency)
   writeUTF8(html, con = connection)
 }
@@ -91,6 +98,8 @@ uiHttpHandler <- function(ui, uiPattern = "^/$") {
         showcaseMode <- mode
     }
 
+    testMode <- .globals$testMode %OR% FALSE
+
     # Create a restore context using query string
     bookmarkStore <- getShinyOption("bookmarkStore", default = "disable")
     if (bookmarkStore == "disable") {
@@ -121,7 +130,7 @@ uiHttpHandler <- function(ui, uiPattern = "^/$") {
     if (is.null(uiValue))
       return(NULL)
 
-    renderPage(uiValue, textConn, showcaseMode)
+    renderPage(uiValue, textConn, showcaseMode, testMode)
     html <- paste(readLines(textConn, encoding = 'UTF-8'), collapse='\n')
     return(httpResponse(200, content=enc2utf8(html)))
   }

R/shinywrappers.R

@@ -1,4 +1,4 @@
-globalVariables('func')
+utils::globalVariables('func')
 
 #' Mark a function as a render function
 #'
@@ -52,6 +52,49 @@ markRenderFunction <- function(uiFunc, renderFunc, outputArgs = list()) {
             hasExecuted = hasExecuted)
 }
 
+#' Implement render functions
+#'
+#' @param func A function without parameters, that returns user data. If the
+#'   returned value is a promise, then the render function will proceed in async
+#'   mode.
+#' @param transform A function that takes four arguments: \code{value},
+#'   \code{session}, \code{name}, and \code{...} (for future-proofing). This
+#'   function will be invoked each time a value is returned from \code{func},
+#'   and is responsible for changing the value into a JSON-ready value to be
+#'   JSON-encoded and sent to the browser.
+#' @param outputFunc The UI function that is used (or most commonly used) with
+#'   this render function. This can be used in R Markdown documents to create
+#'   complete output widgets out of just the render function.
+#' @param outputArgs A list of arguments to pass to the \code{outputFunc}.
+#'   Render functions should include \code{outputArgs = list()} in their own
+#'   parameter list, and pass through the value as this argument, to allow app
+#'   authors to customize outputs. (Currently, this is only supported for
+#'   dynamically generated UIs, such as those created by Shiny code snippets
+#'   embedded in R Markdown documents).
+#' @return An annotated render function, ready to be assigned to an
+#'   \code{output} slot.
+#'
+#' @export
+createRenderFunction <- function(
+  func, transform = function(value, session, name, ...) value,
+  outputFunc = NULL, outputArgs = NULL
+) {
+
+  renderFunc <- function(shinysession, name, ...) {
+    hybrid_chain(
+      func(),
+      function(value, .visible) {
+        transform(setVisible(value, .visible), shinysession, name, ...)
+      }
+    )
+  }
+
+  if (!is.null(outputFunc))
+    markRenderFunction(outputFunc, renderFunc, outputArgs = outputArgs)
+  else
+    renderFunc
+}
+
 useRenderFunction <- function(renderFunc, inline = FALSE) {
   outputFunction <- attr(renderFunc, "outputFunc")
   outputArgs <- attr(renderFunc, "outputArgs")
@@ -68,12 +111,16 @@ useRenderFunction <- function(renderFunc, inline = FALSE) {
   }
 
   id <- createUniqueId(8, "out")
-  # Make the id the first positional argument
-  outputArgs <- c(list(id), outputArgs)
 
   o <- getDefaultReactiveDomain()$output
-  if (!is.null(o))
+  if (!is.null(o)) {
     o[[id]] <- renderFunc
+    # If there's a namespace, we must respect it
+    id <- getDefaultReactiveDomain()$ns(id)
+  }
+
+  # Make the id the first positional argument
+  outputArgs <- c(list(id), outputArgs)
 
   if (is.logical(formals(outputFunction)[["inline"]]) && !("inline" %in% names(outputArgs))) {
     outputArgs[["inline"]] <- inline
@@ -88,6 +135,34 @@ as.tags.shiny.render.function <- function(x, ..., inline = FALSE) {
   useRenderFunction(x, inline = inline)
 }
 
+
+#' Mark a render function with attributes that will be used by the output
+#'
+#' @inheritParams markRenderFunction
+#' @param snapshotExclude If TRUE, exclude the output from test snapshots.
+#' @param snapshotPreprocess A function for preprocessing the value before
+#'   taking a test snapshot.
+#'
+#' @keywords internal
+markOutputAttrs <- function(renderFunc, snapshotExclude = NULL,
+  snapshotPreprocess = NULL)
+{
+  # Add the outputAttrs attribute if necessary
+  if (is.null(attr(renderFunc, "outputAttrs", TRUE))) {
+    attr(renderFunc, "outputAttrs") <- list()
+  }
+
+  if (!is.null(snapshotExclude)) {
+    attr(renderFunc, "outputAttrs")$snapshotExclude <- snapshotExclude
+  }
+
+  if (!is.null(snapshotPreprocess)) {
+    attr(renderFunc, "outputAttrs")$snapshotPreprocess <- snapshotPreprocess
+  }
+
+  renderFunc
+}
+
 #' Image file output
 #'
 #' Renders a reactive image that is suitable for assigning to an \code{output}
@@ -127,6 +202,7 @@ as.tags.shiny.render.function <- function(x, ..., inline = FALSE) {
 #' @examples
 #' ## Only run examples in interactive R sessions
 #' if (interactive()) {
+#' options(device.ask.default = FALSE)
 #'
 #' ui <- fluidPage(
 #'   sliderInput("n", "Number of observations", 2, 1000, 500),
@@ -193,26 +269,25 @@ renderImage <- function(expr, env=parent.frame(), quoted=FALSE,
                         deleteFile=TRUE, outputArgs=list()) {
   installExprFunction(expr, "func", env, quoted)
 
-  renderFunc <- function(shinysession, name, ...) {
-    imageinfo <- func()
-    # Should the file be deleted after being sent? If .deleteFile not set or if
-    # TRUE, then delete; otherwise don't delete.
-    if (deleteFile) {
-      on.exit(unlink(imageinfo$src))
-    }
+  createRenderFunction(func,
+    transform = function(imageinfo, session, name, ...) {
+      # Should the file be deleted after being sent? If .deleteFile not set or if
+      # TRUE, then delete; otherwise don't delete.
+      if (deleteFile) {
+        on.exit(unlink(imageinfo$src))
+      }
 
-    # If contentType not specified, autodetect based on extension
-    contentType <- imageinfo$contentType %OR% getContentType(imageinfo$src)
+      # If contentType not specified, autodetect based on extension
+      contentType <- imageinfo$contentType %OR% getContentType(imageinfo$src)
 
-    # Extra values are everything in imageinfo except 'src' and 'contentType'
-    extra_attr <- imageinfo[!names(imageinfo) %in% c('src', 'contentType')]
+      # Extra values are everything in imageinfo except 'src' and 'contentType'
+      extra_attr <- imageinfo[!names(imageinfo) %in% c('src', 'contentType')]
 
-    # Return a list with src, and other img attributes
-    c(src = shinysession$fileUrl(name, file=imageinfo$src, contentType=contentType),
-      extra_attr)
-  }
-
-  markRenderFunction(imageOutput, renderFunc, outputArgs = outputArgs)
+      # Return a list with src, and other img attributes
+      c(src = session$fileUrl(name, file=imageinfo$src, contentType=contentType),
+        extra_attr)
+    },
+    imageOutput, outputArgs)
 }
 
 
@@ -220,7 +295,7 @@ renderImage <- function(expr, env=parent.frame(), quoted=FALSE,
 #'
 #' Makes a reactive version of the given function that captures any printed
 #' output, and also captures its printable result (unless
-#' \code{\link{invisible}}), into a string. The resulting function is suitable
+#' \code{\link[base]{invisible}}), into a string. The resulting function is suitable
 #' for assigning to an  \code{output} slot.
 #'
 #' The corresponding HTML output tag can be anything (though \code{pre} is
@@ -232,14 +307,14 @@ renderImage <- function(expr, env=parent.frame(), quoted=FALSE,
 #'
 #' Note that unlike most other Shiny output functions, if the given function
 #' returns \code{NULL} then \code{NULL} will actually be visible in the output.
-#' To display nothing, make your function return \code{\link{invisible}()}.
+#' To display nothing, make your function return \code{\link[base]{invisible}()}.
 #'
 #' @param expr An expression that may print output and/or return a printable R
 #'   object.
 #' @param env The environment in which to evaluate \code{expr}.
 #' @param quoted Is \code{expr} a quoted expression (with \code{quote()})? This
 #'   is useful if you want to save an expression in a variable.
-#' @param width The value for \code{\link{options}('width')}.
+#' @param width The value for \code{\link[base]{options}('width')}.
 #' @param outputArgs A list of arguments to be passed through to the implicit
 #'   call to \code{\link{verbatimTextOutput}} when \code{renderPrint} is used
 #'   in an interactive R Markdown document.
@@ -252,15 +327,74 @@ renderPrint <- function(expr, env = parent.frame(), quoted = FALSE,
                         width = getOption('width'), outputArgs=list()) {
   installExprFunction(expr, "func", env, quoted)
 
+  # Set a promise domain that sets the console width
+  #   and captures output
+  # op <- options(width = width)
+  # on.exit(options(op), add = TRUE)
+
   renderFunc <- function(shinysession, name, ...) {
-    op <- options(width = width)
-    on.exit(options(op), add = TRUE)
-    paste(utils::capture.output(func()), collapse = "\n")
+    domain <- createRenderPrintPromiseDomain(width)
+    hybrid_chain(
+      {
+        promises::with_promise_domain(domain, func())
+      },
+      function(value, .visible) {
+        if (.visible) {
+          cat(file = domain$conn, paste(utils::capture.output(value, append = TRUE), collapse = "\n"))
+        }
+        res <- paste(readLines(domain$conn, warn = FALSE), collapse = "\n")
+        res
+      },
+      finally = function() {
+        close(domain$conn)
+      }
+    )
   }
 
   markRenderFunction(verbatimTextOutput, renderFunc, outputArgs = outputArgs)
 }
 
+createRenderPrintPromiseDomain <- function(width) {
+  f <- file()
+
+  promises::new_promise_domain(
+    wrapOnFulfilled = function(onFulfilled) {
+      force(onFulfilled)
+      function(...) {
+        op <- options(width = width)
+        on.exit(options(op), add = TRUE)
+
+        sink(f, append = TRUE)
+        on.exit(sink(NULL), add = TRUE)
+
+        onFulfilled(...)
+      }
+    },
+    wrapOnRejected = function(onRejected) {
+      force(onRejected)
+      function(...) {
+        op <- options(width = width)
+        on.exit(options(op), add = TRUE)
+
+        sink(f, append = TRUE)
+        on.exit(sink(NULL), add = TRUE)
+
+        onRejected(...)
+      }
+    },
+    wrapSync = function(expr) {
+      op <- options(width = width)
+      on.exit(options(op), add = TRUE)
+
+      sink(f, append = TRUE)
+      on.exit(sink(NULL), add = TRUE)
+
+      force(expr)
+    },
+    conn = f
+  )
+}
+
 #' Text Output
 #'
 #' Makes a reactive version of the given function that also uses
@@ -292,18 +426,18 @@ renderText <- function(expr, env=parent.frame(), quoted=FALSE,
                        outputArgs=list()) {
   installExprFunction(expr, "func", env, quoted)
 
-  renderFunc <- function(shinysession, name, ...) {
-    value <- func()
-    return(paste(utils::capture.output(cat(value)), collapse="\n"))
-  }
-
-  markRenderFunction(textOutput, renderFunc, outputArgs = outputArgs)
+  createRenderFunction(
+    func,
+    function(value, session, name, ...) {
+      paste(utils::capture.output(cat(value)), collapse="\n")
+    },
+    textOutput, outputArgs
+  )
 }
 
 #' UI Output
 #'
-#' \bold{Experimental feature.} Makes a reactive version of a function that
-#' generates HTML using the Shiny UI library.
+#' Renders reactive HTML using the Shiny UI library.
 #'
 #' The corresponding HTML output tag should be \code{div} and have the CSS class
 #' name \code{shiny-html-output} (or use \code{\link{uiOutput}}).
@@ -317,7 +451,7 @@ renderText <- function(expr, env=parent.frame(), quoted=FALSE,
 #'   call to \code{\link{uiOutput}} when \code{renderUI} is used in an
 #'   interactive R Markdown document.
 #'
-#' @seealso conditionalPanel
+#' @seealso \code{\link{uiOutput}}
 #' @export
 #' @examples
 #' ## Only run examples in interactive R sessions
@@ -342,15 +476,16 @@ renderUI <- function(expr, env=parent.frame(), quoted=FALSE,
                      outputArgs=list()) {
   installExprFunction(expr, "func", env, quoted)
 
-  renderFunc <- function(shinysession, name, ...) {
-    result <- func()
-    if (is.null(result) || length(result) == 0)
-      return(NULL)
+  createRenderFunction(
+    func,
+    function(result, shinysession, name, ...) {
+      if (is.null(result) || length(result) == 0)
+        return(NULL)
 
-    processDeps(result, shinysession)
-  }
-
-  markRenderFunction(uiOutput, renderFunc, outputArgs = outputArgs)
+      processDeps(result, shinysession)
+    },
+    uiOutput, outputArgs
+  )
 }
 
 #' File Downloads
@@ -409,7 +544,9 @@ downloadHandler <- function(filename, content, contentType=NA, outputArgs=list()
   renderFunc <- function(shinysession, name, ...) {
     shinysession$registerDownload(name, filename, contentType, content)
   }
-  markRenderFunction(downloadButton, renderFunc, outputArgs = outputArgs)
+  snapshotExclude(
+    markRenderFunction(downloadButton, renderFunc, outputArgs = outputArgs)
+  )
 }
 
 #' Table output with the JavaScript library DataTables
@@ -420,7 +557,7 @@ downloadHandler <- function(filename, content, contentType=NA, outputArgs=list()
 #' the server infrastructure.
 #'
 #' For the \code{options} argument, the character elements that have the class
-#' \code{"AsIs"} (usually returned from \code{\link{I}()}) will be evaluated in
+#' \code{"AsIs"} (usually returned from \code{\link[base]{I}()}) will be evaluated in
 #' JavaScript. This is useful when the type of the option value is not supported
 #' in JSON, e.g., a JavaScript function, which can be obtained by evaluating a
 #' character string. Note this only applies to the root-level elements of the
@@ -486,31 +623,46 @@ renderDataTable <- function(expr, options = NULL, searchDelay = 500,
     if (is.function(options)) options <- options()
     options <- checkDT9(options)
     res <- checkAsIs(options)
-    data <- func()
-    if (length(dim(data)) != 2) return() # expects a rectangular data object
-    if (is.data.frame(data)) data <- as.data.frame(data)
-    action <- shinysession$registerDataObj(name, data, dataTablesJSON)
-    colnames <- colnames(data)
-    # if escape is column names, turn names to numeric indices
-    if (is.character(escape)) {
-      escape <- stats::setNames(seq_len(ncol(data)), colnames)[escape]
-      if (any(is.na(escape)))
-        stop("Some column names in the 'escape' argument not found in data")
-    }
-    colnames[escape] <- htmlEscape(colnames[escape])
-    if (!is.logical(escape)) {
-      if (!is.numeric(escape))
-        stop("'escape' must be TRUE, FALSE, or a numeric vector, or column names")
-      escape <- paste(escape, collapse = ',')
-    }
-    list(
-      colnames = colnames, action = action, options = res$options,
-      evalOptions = if (length(res$eval)) I(res$eval), searchDelay = searchDelay,
-      callback = paste(callback, collapse = '\n'), escape = escape
+    hybrid_chain(
+      func(),
+      function(data) {
+        if (length(dim(data)) != 2) return() # expects a rectangular data object
+        if (is.data.frame(data)) data <- as.data.frame(data)
+        action <- shinysession$registerDataObj(name, data, dataTablesJSON)
+        colnames <- colnames(data)
+        # if escape is column names, turn names to numeric indices
+        if (is.character(escape)) {
+          escape <- stats::setNames(seq_len(ncol(data)), colnames)[escape]
+          if (any(is.na(escape)))
+            stop("Some column names in the 'escape' argument not found in data")
+        }
+        colnames[escape] <- htmlEscape(colnames[escape])
+        if (!is.logical(escape)) {
+          if (!is.numeric(escape))
+            stop("'escape' must be TRUE, FALSE, or a numeric vector, or column names")
+          escape <- paste(escape, collapse = ',')
+        }
+        list(
+          colnames = colnames, action = action, options = res$options,
+          evalOptions = if (length(res$eval)) I(res$eval), searchDelay = searchDelay,
+          callback = paste(callback, collapse = '\n'), escape = escape
+        )
+      }
     )
   }
 
-  markRenderFunction(dataTableOutput, renderFunc, outputArgs = outputArgs)
+  renderFunc <- markRenderFunction(dataTableOutput, renderFunc, outputArgs = outputArgs)
+
+  renderFunc <- snapshotPreprocessOutput(renderFunc, function(value) {
+    # Remove the action field so that it's not saved in test snapshots. It
+    # contains a value that changes every time an app is run, and shouldn't be
+    # stored for test snapshots. It will be something like:
+    # "session/e0d14d3fe97f672f9655a127f2a1e079/dataobj/table?w=&nonce=7f5d6d54e22450a3"
+    value$action <- NULL
+    value
+  })
+
+  renderFunc
 }
 
 # a data frame containing the DataTables 1.9 and 1.10 names

R/showcase.R

@@ -18,7 +18,8 @@ licenseLink <- function(licenseName) {
     "Artistic-2.0" = "http://www.r-project.org/Licenses/Artistic-2.0",
     "BSD_2_clause" = "http://www.r-project.org/Licenses/BSD_2_clause",
     "BSD_3_clause" = "http://www.r-project.org/Licenses/BSD_3_clause",
-    "MIT" = "http://www.r-project.org/Licenses/MIT")
+    "MIT" = "http://www.r-project.org/Licenses/MIT",
+    "CC-BY-SA-4.0" = "https://www.r-project.org/Licenses/CC-BY-SA-4.0")
   if (exists(licenseName, where = licenses)) {
     tags$a(href=licenses[[licenseName]], licenseName)
   } else {
@@ -31,7 +32,7 @@ licenseLink <- function(licenseName) {
 showcaseHead <- function() {
 
   deps  <- list(
-    htmlDependency("jqueryui", "1.11.4", c(href="shared/jqueryui"),
+    htmlDependency("jqueryui", "1.12.1", c(href="shared/jqueryui"),
       script = "jquery-ui.min.js"),
     htmlDependency("showdown", "0.3.1", c(href="shared/showdown/compressed"),
       script = "showdown.js"),

R/snapshot.R

@@ -0,0 +1,44 @@
+#' Mark an output to be excluded from test snapshots
+#'
+#' @param x A reactive which will be assigned to an output.
+#'
+#' @export
+snapshotExclude <- function(x) {
+  markOutputAttrs(x, snapshotExclude = TRUE)
+}
+
+#' Add a function for preprocessing an output before taking a test snapshot
+#'
+#' @param x A reactive which will be assigned to an output.
+#' @param fun A function that takes the output value as an input and returns a
+#'   modified value. The returned value will be used for the test snapshot.
+#'
+#' @export
+snapshotPreprocessOutput <- function(x, fun) {
+  markOutputAttrs(x, snapshotPreprocess = fun)
+}
+
+
+#' Add a function for preprocessing an input before taking a test snapshot
+#'
+#' @param inputId Name of the input value.
+#' @param fun A function that takes the input value and returns a modified
+#'   value. The returned value will be used for the test snapshot.
+#' @param session A Shiny session object.
+#'
+#' @export
+snapshotPreprocessInput <- function(inputId, fun, session = getDefaultReactiveDomain()) {
+  if (is.null(session)) {
+    stop("snapshotPreprocessInput() needs a session object.")
+  }
+
+  input_impl <- .subset2(session$input, "impl")
+  input_impl$setMeta(inputId, "shiny.snapshot.preprocess", fun)
+}
+
+
+# Strip out file path from fileInput value
+snapshotPreprocessorFileInput <- function(value) {
+  value$datapath <- basename(value$datapath)
+  value
+}

R/test-export.R

@@ -0,0 +1,61 @@
+#' Register expressions for export in test mode
+#'
+#' This function registers expressions that will be evaluated when a test export
+#' event occurs. These events are triggered by accessing a snapshot URL.
+#'
+#' This function only has an effect if the app is launched in test mode. This is
+#' done by calling \code{runApp()} with \code{test.mode=TRUE}, or by setting the
+#' global option \code{shiny.testmode} to \code{TRUE}.
+#'
+#' @param quoted_ Are the expression quoted? Default is \code{FALSE}.
+#' @param env_ The environment in which the expression should be evaluated.
+#' @param session_ A Shiny session object.
+#' @param ... Named arguments that are quoted or unquoted expressions that will
+#'   be captured and evaluated when snapshot URL is visited.
+#' @examples
+#' ## Only run this example in interactive R sessions
+#' if (interactive()) {
+#'
+#' options(shiny.testmode = TRUE)
+#'
+#' # This application shows the test snapshot URL; clicking on it will
+#' # fetch the input, output, and exported values in JSON format.
+#' shinyApp(
+#'   ui = basicPage(
+#'     h4("Snapshot URL: "),
+#'     uiOutput("url"),
+#'     h4("Current values:"),
+#'     verbatimTextOutput("values"),
+#'     actionButton("inc", "Increment x")
+#'   ),
+#'
+#'   server = function(input, output, session) {
+#'     vals <- reactiveValues(x = 1)
+#'     y <- reactive({ vals$x + 1 })
+#'
+#'     observeEvent(input$inc, {
+#'       vals$x <<- vals$x + 1
+#'     })
+#'
+#'     exportTestValues(
+#'       x = vals$x,
+#'       y = y()
+#'     )
+#'
+#'     output$url <- renderUI({
+#'       url <- session$getTestSnapshotUrl(format="json")
+#'       a(href = url, url)
+#'     })
+#'
+#'     output$values <- renderText({
+#'       paste0("vals$x: ", vals$x, "\ny: ", y())
+#'     })
+#'   }
+#' )
+#' }
+#' @export
+exportTestValues <- function(..., quoted_ = FALSE, env_ = parent.frame(),
+  session_ = getDefaultReactiveDomain())
+{
+  session_$exportTestValues(..., quoted_ = quoted_, env_ = env_)
+}

R/timer.R

@@ -42,6 +42,17 @@ TimerCallbacks <- R6Class(
 
       return(id)
     },
+    unschedule = function(id) {
+      toRemoveIndices <- .times$id %in% id
+      toRemoveIds <- .times[toRemoveIndices, "id", drop = TRUE]
+      if (length(toRemoveIds) > 0) {
+        .times <<- .times[!toRemoveIndices,]
+        for (toRemoveId in as.character(toRemoveIds)) {
+          .funcs$remove(toRemoveId)
+        }
+      }
+      return(id %in% toRemoveIds)
+    },
     timeToNextEvent = function() {
       if (dim(.times)[1] == 0)
         return(Inf)
@@ -79,13 +90,9 @@ timerCallbacks <- TimerCallbacks$new()
 
 scheduleTask <- function(millis, callback) {
   cancelled <- FALSE
-  timerCallbacks$schedule(millis, function() {
-    if (!cancelled)
-      callback()
-  })
+  id <- timerCallbacks$schedule(millis, callback)
 
   function() {
-    cancelled <<- TRUE
-    callback <<- NULL # to allow for callback to be gc'ed
+    invisible(timerCallbacks$unschedule(id))
   }
 }

R/update-input.R

@@ -2,6 +2,7 @@
 #'
 #' @template update-input
 #' @param value The value to set for the input object.
+#' @param placeholder The placeholder to set for the input object.
 #'
 #' @seealso \code{\link{textInput}}
 #'
@@ -34,15 +35,15 @@
 #' shinyApp(ui, server)
 #' }
 #' @export
-updateTextInput <- function(session, inputId, label = NULL, value = NULL) {
-  message <- dropNulls(list(label=label, value=value))
+updateTextInput <- function(session, inputId, label = NULL, value = NULL, placeholder = NULL) {
+  message <- dropNulls(list(label=label, value=value, placeholder=placeholder))
   session$sendInputMessage(inputId, message)
 }
 
 #' Change the value of a textarea input on the client
 #'
 #' @template update-input
-#' @param value The value to set for the input object.
+#' @inheritParams updateTextInput
 #'
 #' @seealso \code{\link{textAreaInput}}
 #'
@@ -106,7 +107,10 @@ updateTextAreaInput <- updateTextInput
 #' shinyApp(ui, server)
 #' }
 #' @export
-updateCheckboxInput <- updateTextInput
+updateCheckboxInput <- function(session, inputId, label = NULL, value = NULL) {
+  message <- dropNulls(list(label=label, value=value))
+  session$sendInputMessage(inputId, message)
+}
 
 
 #' Change the label or icon of an action button on the client
@@ -179,21 +183,18 @@ updateActionButton <- function(session, inputId, label = NULL, icon = NULL) {
 #' if (interactive()) {
 #'
 #' ui <- fluidPage(
-#'   sliderInput("controller", "Controller", 1, 30, 10),
+#'   sliderInput("n", "Day of month", 1, 30, 10),
 #'   dateInput("inDate", "Input date")
 #' )
 #'
 #' server <- function(input, output, session) {
 #'   observe({
-#'     # We'll use the input$controller variable multiple times, so save it as x
-#'     # for convenience.
-#'     x <- input$controller
-#'
+#'     date <- as.Date(paste0("2013-04-", input$n))
 #'     updateDateInput(session, "inDate",
-#'       label = paste("Date label", x),
-#'       value = paste("2013-04-", x, sep=""),
-#'       min   = paste("2013-04-", x-1, sep=""),
-#'       max   = paste("2013-04-", x+1, sep="")
+#'       label = paste("Date label", input$n),
+#'       value = date,
+#'       min   = date - 3,
+#'       max   = date + 3
 #'     )
 #'   })
 #' }
@@ -241,20 +242,20 @@ updateDateInput <- function(session, inputId, label = NULL, value = NULL,
 #' if (interactive()) {
 #'
 #' ui <- fluidPage(
-#'   sliderInput("controller", "Controller", 1, 30, 10),
+#'   sliderInput("n", "Day of month", 1, 30, 10),
 #'   dateRangeInput("inDateRange", "Input date range")
 #' )
 #'
 #' server <- function(input, output, session) {
 #'   observe({
-#'     # We'll use the input$controller variable multiple times, so save it as x
-#'     # for convenience.
-#'     x <- input$controller
+#'     date <- as.Date(paste0("2013-04-", input$n))
 #'
 #'     updateDateRangeInput(session, "inDateRange",
-#'       label = paste("Date range label", x),
-#'       start = paste("2013-01-", x, sep=""),
-#'       end = paste("2013-12-", x, sep="")
+#'       label = paste("Date range label", input$n),
+#'       start = date - 1,
+#'       end = date + 1,
+#'       min = date - 5,
+#'       max = date + 5
 #'     )
 #'   })
 #' }
@@ -382,13 +383,17 @@ updateNumericInput <- function(session, inputId, label = NULL, value = NULL,
   session$sendInputMessage(inputId, message)
 }
 
-#' Change the value of a slider input on the client
+#' Update Slider Input Widget
+#'
+#' Change the value of a slider input on the client.
 #'
 #' @template update-input
 #' @param value The value to set for the input object.
 #' @param min Minimum value.
 #' @param max Maximum value.
 #' @param step Step size.
+#' @param timeFormat Date and POSIXt formatting.
+#' @param timezone The timezone offset for POSIXt objects.
 #'
 #' @seealso \code{\link{sliderInput}}
 #'
@@ -421,22 +426,15 @@ updateNumericInput <- function(session, inputId, label = NULL, value = NULL,
 #' }
 #' @export
 updateSliderInput <- function(session, inputId, label = NULL, value = NULL,
-  min = NULL, max = NULL, step = NULL)
+  min = NULL, max = NULL, step = NULL, timeFormat = NULL, timezone = NULL)
 {
-  # Make sure that value, min, max all have the same type, because we need
-  # special handling for dates and datetimes.
-  vals <- dropNulls(list(value, min, max))
+  dataType <- getSliderType(min, max, value)
 
-  type <- unique(lapply(vals, function(x) {
-    if      (inherits(x, "Date"))   "date"
-    else if (inherits(x, "POSIXt")) "datetime"
-    else                            "number"
-  }))
-  if (length(type) > 1) {
-    stop("Type mismatch for value, min, and max")
+  if (is.null(timeFormat)) {
+    timeFormat <- switch(dataType, date = "%F", datetime = "%F %T", number = NULL)
   }
 
-  if ((length(type) == 1) && (type == "date" || type == "datetime")) {
+  if (dataType == "date" || dataType == "datetime") {
     to_ms <- function(x) 1000 * as.numeric(as.POSIXct(x))
     if (!is.null(min))   min   <- to_ms(min)
     if (!is.null(max))   max   <- to_ms(max)
@@ -448,23 +446,28 @@ updateSliderInput <- function(session, inputId, label = NULL, value = NULL,
     value = formatNoSci(value),
     min = formatNoSci(min),
     max = formatNoSci(max),
-    step = formatNoSci(step)
+    step = formatNoSci(step),
+    `data-type` = dataType,
+    `time-format` = timeFormat,
+    timezone = timezone
   ))
   session$sendInputMessage(inputId, message)
 }
 
 
 updateInputOptions <- function(session, inputId, label = NULL, choices = NULL,
-                               selected = NULL, inline = FALSE,
-                               type = 'checkbox') {
-  if (!is.null(choices))
-    choices <- choicesWithNames(choices)
-  if (!is.null(selected))
-    selected <- validateSelected(selected, choices, session$ns(inputId))
+                               selected = NULL, inline = FALSE, type = NULL,
+                               choiceNames = NULL, choiceValues = NULL) {
+  if (is.null(type)) stop("Please specify the type ('checkbox' or 'radio')")
 
-  options <- if (!is.null(choices)) {
+  args <- normalizeChoicesArgs(choices, choiceNames, choiceValues, mustExist = FALSE)
+
+  if (!is.null(selected)) selected <- as.character(selected)
+
+  options <- if (!is.null(args$choiceValues)) {
     format(tagList(
-      generateOptions(session$ns(inputId), choices, selected, inline, type = type)
+      generateOptions(session$ns(inputId), selected, inline, type,
+        args$choiceNames, args$choiceValues)
     ))
   }
 
@@ -513,9 +516,10 @@ updateInputOptions <- function(session, inputId, label = NULL, choices = NULL,
 #' }
 #' @export
 updateCheckboxGroupInput <- function(session, inputId, label = NULL,
-                                     choices = NULL, selected = NULL,
-                                     inline = FALSE) {
-  updateInputOptions(session, inputId, label, choices, selected, inline)
+  choices = NULL, selected = NULL, inline = FALSE,
+  choiceNames = NULL, choiceValues = NULL) {
+  updateInputOptions(session, inputId, label, choices, selected,
+                     inline, "checkbox", choiceNames, choiceValues)
 }
 
 
@@ -555,13 +559,15 @@ updateCheckboxGroupInput <- function(session, inputId, label = NULL,
 #' }
 #' @export
 updateRadioButtons <- function(session, inputId, label = NULL, choices = NULL,
-                               selected = NULL, inline = FALSE) {
-  if (!is.null(choices)) choices <- as.character(choices)
-  if (!is.null(selected)) selected <- as.character(selected)
-
+                               selected = NULL, inline = FALSE,
+                               choiceNames = NULL, choiceValues = NULL) {
   # you must select at least one radio button
-  if (is.null(selected) && !is.null(choices)) selected <- choices[[1]]
-  updateInputOptions(session, inputId, label, choices, selected, inline, type = 'radio')
+  if (is.null(selected)) {
+    if (!is.null(choices)) selected <- choices[[1]]
+    else if (!is.null(choiceValues)) selected <- choiceValues[[1]]
+  }
+  updateInputOptions(session, inputId, label, choices, selected,
+    inline, 'radio', choiceNames, choiceValues)
 }
 
 
@@ -570,7 +576,7 @@ updateRadioButtons <- function(session, inputId, label = NULL, choices = NULL,
 #' @template update-input
 #' @inheritParams selectInput
 #'
-#' @seealso \code{\link{selectInput}}
+#' @seealso \code{\link{selectInput}} \code{\link{varSelectInput}}
 #'
 #' @examples
 #' ## Only run examples in interactive R sessions
@@ -607,8 +613,7 @@ updateRadioButtons <- function(session, inputId, label = NULL, choices = NULL,
 updateSelectInput <- function(session, inputId, label = NULL, choices = NULL,
                               selected = NULL) {
   choices <- if (!is.null(choices)) choicesWithNames(choices)
-  if (!is.null(selected))
-    selected <- validateSelected(selected, choices, inputId)
+  if (!is.null(selected)) selected <- as.character(selected)
   options <- if (!is.null(choices)) selectOptions(choices, selected)
   message <- dropNulls(list(label = label, options = options, value = selected))
   session$sendInputMessage(inputId, message)
@@ -628,7 +633,7 @@ updateSelectizeInput <- function(session, inputId, label = NULL, choices = NULL,
     res <- checkAsIs(options)
     cfg <- tags$script(
       type = 'application/json',
-      `data-for` = inputId,
+      `data-for` = session$ns(inputId),
       `data-eval` = if (length(res$eval)) HTML(toJSON(res$eval)),
       HTML(toJSON(res$options))
     )
@@ -637,8 +642,95 @@ updateSelectizeInput <- function(session, inputId, label = NULL, choices = NULL,
   if (!server) {
     return(updateSelectInput(session, inputId, label, choices, selected))
   }
+
+  noOptGroup <- TRUE
+  if (is.list(choices)) {
+    # check if list is nested
+    for (i in seq_along(choices)) {
+      if (is.list(choices[[i]]) || length(choices[[i]]) > 1) {
+        noOptGroup <- FALSE
+        break()
+      }
+    }
+  }
+  # convert choices to a data frame so it returns [{label: , value: , optgroup: },...]
+  choices <- if (is.data.frame(choices)) {
+    # jcheng 2018/09/25: I don't think we ever said data frames were OK to pass
+    # to updateSelectInput, but one of the example apps does this and at least
+    # one user noticed when we broke it.
+    # https://github.com/rstudio/shiny/issues/2172
+    # https://github.com/rstudio/shiny/issues/2192
+    as.data.frame(choices, stringsAsFactors = FALSE)
+  } else if (is.atomic(choices) || noOptGroup) {
+    # fast path for vectors and flat lists
+    if (is.list(choices)) {
+      choices <- unlist(choices)
+    }
+    if (is.null(names(choices))) {
+      lab <- as.character(choices)
+    } else {
+      lab <- names(choices)
+      # replace empty names like: choices = c(a = 1, 2)
+      # in this case: names(choices) = c("a", "")
+      # with replacement below choices will be: lab = c("a", "2")
+      empty_names_indices <- lab == ""
+      lab[empty_names_indices] <- as.character(choices[empty_names_indices])
+    }
+    data.frame(label = lab, value = choices, stringsAsFactors = FALSE)
+  } else {
+    # slow path for nested lists/optgroups
+    list_names <- names(choices)
+    if (is.null(list_names)) {
+      list_names <- rep("", length(choices))
+    }
+
+    choice_list <- mapply(choices, list_names, FUN = function (choice, name) {
+      group <- ""
+      lab <- name
+      if (lab == "") lab <- as.character(choice)
+
+      if (is.list(choice) || length(choice) > 1) {
+        group <- rep(name, length(choice))
+        choice <- unlist(choice)
+
+        if (is.null(names(choice))) {
+          lab <- as.character(choice)
+        } else {
+          lab <- names(choice)
+          # replace empty names like: choices = c(a = 1, 2)
+          # in this case: names(choices) = c("a", "")
+          # with replacement below choices will be: lab = c("a", "2")
+          empty_names_indices <- lab == ""
+          lab[empty_names_indices] <- as.character(choice[empty_names_indices])
+        }
+      }
+
+      list(
+        label = lab,
+        value = as.character(choice),
+        # The name "optgroup" is because this is the default field where
+        # selectize will look for group IDs
+        optgroup = group
+      )
+    }, SIMPLIFY = FALSE)
+
+
+    extract_vector <- function(x, name) {
+      vecs <- lapply(x, `[[`, name)
+      do.call(c, vecs)
+    }
+
+    data.frame(
+      label = extract_vector(choice_list, "label"),
+      value = extract_vector(choice_list, "value"),
+      optgroup = extract_vector(choice_list, "optgroup"),
+      stringsAsFactors = FALSE, row.names = NULL
+    )
+  }
+
   value <- unname(selected)
   attr(choices, 'selected_value') <- value
+
   message <- dropNulls(list(
     label = label,
     value = value,
@@ -646,38 +738,76 @@ updateSelectizeInput <- function(session, inputId, label = NULL, choices = NULL,
   ))
   session$sendInputMessage(inputId, message)
 }
+#' @rdname updateSelectInput
+#' @inheritParams varSelectInput
+#' @export
+updateVarSelectInput <- function(session, inputId, label = NULL, data = NULL, selected = NULL) {
+  if (is.null(data)) {
+    choices <- NULL
+  } else {
+    choices <- colnames(data)
+  }
+  updateSelectInput(
+    session = session,
+    inputId = inputId,
+    label = label,
+    choices = choices,
+    selected = selected
+  )
+}
+#' @rdname updateSelectInput
+#' @export
+updateVarSelectizeInput <- function(session, inputId, label = NULL, data = NULL, selected = NULL, options = list(), server = FALSE) {
+  if (is.null(data)) {
+    choices <- NULL
+  } else {
+    choices <- colnames(data)
+  }
+  updateSelectizeInput(
+    session = session,
+    inputId = inputId,
+    label = label,
+    choices = choices,
+    selected = selected,
+    options = options,
+    server = server
+  )
+}
+
+
 
 selectizeJSON <- function(data, req) {
   query <- parseQueryString(req$QUERY_STRING)
+
   # extract the query variables, conjunction (and/or), search string, maximum options
-  var <- c(jsonlite::fromJSON(query$field))
-  cjn <- if (query$conju == 'and') all else any
+  var <- c(safeFromJSON(query$field))
+
   # all keywords in lower-case, for case-insensitive matching
   key <- unique(strsplit(tolower(query$query), '\\s+')[[1]])
+
   if (identical(key, '')) key <- character(0)
   mop <- as.numeric(query$maxop)
   vfd <- query$value  # the value field name
   sel <- attr(data, 'selected_value', exact = TRUE)
 
-  # convert a single vector to a data frame so it returns {label: , value: }
-  # later in JSON; other objects return arbitrary JSON {x: , y: , foo: , ...}
-  data <- if (is.atomic(data)) {
-    data.frame(label = names(choicesWithNames(data)), value = data,
-               stringsAsFactors = FALSE)
-  } else as.data.frame(data, stringsAsFactors = FALSE)
-
   # start searching for keywords in all specified columns
   idx <- logical(nrow(data))
-  if (length(key)) for (v in var) {
-    matches <- do.call(
-      cbind,
-      lapply(key, function(k) {
-        grepl(k, tolower(as.character(data[[v]])), fixed = TRUE)
-      })
-    )
-    # merge column matches using OR, and match multiple keywords in one column
-    # using the conjunction setting (AND or OR)
-    idx <- idx | apply(matches, 1, cjn)
+  if (length(key)) {
+    for (v in var) {
+      matches <- do.call(
+        cbind,
+        lapply(key, function(k) {
+          grepl(k, tolower(as.character(data[[v]])), fixed = TRUE)
+        })
+      )
+      # merge column matches using OR, and match multiple keywords in one column
+      # using the conjunction setting (AND or OR)
+      matches <- rowSums(matches)
+      if (query$conju == 'and')
+        idx <- idx | (matches == length(key))
+      else
+        idx <- idx | matches
+    }
   }
   # only return the first n rows (n = maximum options in configuration)
   idx <- utils::head(if (length(key)) which(idx) else seq_along(idx), mop)

R/utils.R

@@ -43,53 +43,43 @@ repeatable <- function(rngfunc, seed = stats::runif(1, 0, .Machine$integer.max))
   }
 }
 
-# Temporarily set x in env to value, evaluate expr, and
-# then restore x to its original state
-withTemporary <- function(env, x, value, expr, unset = FALSE) {
-
-  if (exists(x, envir = env, inherits = FALSE)) {
-    oldValue <- get(x, envir = env, inherits = FALSE)
-    on.exit(
-      assign(x, oldValue, envir = env, inherits = FALSE),
-      add = TRUE)
-  } else {
-    on.exit(
-      rm(list = x, envir = env, inherits = FALSE),
-      add = TRUE
-    )
-  }
-
-  if (!missing(value) && !isTRUE(unset))
-    assign(x, value, envir = env, inherits = FALSE)
-  else {
-    if (exists(x, envir = env, inherits = FALSE))
-      rm(list = x, envir = env, inherits = FALSE)
-  }
-  force(expr)
-}
-
 .globals$ownSeed <- NULL
 # Evaluate an expression using Shiny's own private stream of
 # randomness (not affected by set.seed).
 withPrivateSeed <- function(expr) {
-  withTemporary(.GlobalEnv, ".Random.seed",
-    .globals$ownSeed, unset=is.null(.globals$ownSeed), {
-      tryCatch({
-        expr
-      }, finally = {
-        .globals$ownSeed <- getExists('.Random.seed', 'numeric', globalenv())
-      })
-    }
-  )
-}
+  # Save the old seed if present.
+  if (exists(".Random.seed", envir = .GlobalEnv, inherits = FALSE)) {
+    hasOrigSeed <- TRUE
+    origSeed <- .GlobalEnv$.Random.seed
+  } else {
+    hasOrigSeed <- FALSE
+  }
 
-# a homemade version of set.seed(NULL) for backward compatibility with R 2.15.x
-reinitializeSeed <- if (getRversion() >= '3.0.0') {
-  function() set.seed(NULL)
-} else function() {
-  if (exists('.Random.seed', globalenv()))
-    rm(list = '.Random.seed', pos = globalenv())
-  stats::runif(1)  # generate any random numbers so R can reinitialize the seed
+  # Swap in the private seed.
+  if (is.null(.globals$ownSeed)) {
+    if (hasOrigSeed) {
+      # Move old seed out of the way if present.
+      rm(.Random.seed, envir = .GlobalEnv, inherits = FALSE)
+    }
+  } else {
+    .GlobalEnv$.Random.seed <- .globals$ownSeed
+  }
+
+  # On exit, save the modified private seed, and put the old seed back.
+  on.exit({
+    .globals$ownSeed <- .GlobalEnv$.Random.seed
+
+    if (hasOrigSeed) {
+      .GlobalEnv$.Random.seed <- origSeed
+    } else {
+      rm(.Random.seed, envir = .GlobalEnv, inherits = FALSE)
+    }
+    # Need to call this to make sure that the value of .Random.seed gets put
+    # into R's internal RNG state. (Issue #1763)
+    httpuv::getRNGState()
+  })
+
+  expr
 }
 
 # Version of runif that runs with private seed
@@ -182,6 +172,16 @@ anyUnnamed <- function(x) {
   any(!nzchar(nms))
 }
 
+
+# Given a vector/list, returns a named vector (the labels will be blank).
+asNamedVector <- function(x) {
+  if (!is.null(names(x)))
+    return(x)
+
+  names(x) <- rep.int("", length(x))
+  x
+}
+
 # Given two named vectors, join them together, and keep only the last element
 # with a given name in the resulting vector. If b has any elements with the same
 # name as elements in a, the element in a is dropped. Also, if there are any
@@ -196,6 +196,30 @@ mergeVectors <- function(a, b) {
   x[!drop_idx]
 }
 
+# Sort a vector by the names of items. If there are multiple items with the
+# same name, preserve the original order of those items. For empty
+# vectors/lists/NULL, return the original value.
+sortByName <- function(x) {
+  if (anyUnnamed(x))
+    stop("All items must be named")
+
+  # Special case for empty vectors/lists, and NULL
+  if (length(x) == 0)
+    return(x)
+
+  x[order(names(x))]
+}
+
+# Wrapper around list2env with a NULL check. In R <3.2.0, if an empty unnamed
+# list is passed to list2env(), it errors. But an empty named list is OK. For
+# R >=3.2.0, this wrapper is not necessary.
+list2env2 <- function(x, ...) {
+  # Ensure that zero-length lists have a name attribute
+  if (length(x) == 0)
+    attr(x, "names") <- character(0)
+
+  list2env(x, ...)
+}
 
 # Combine dir and (file)name into a file path. If a file already exists with a
 # name differing only by case, then use it instead.
@@ -245,6 +269,25 @@ dirExists <- function(paths) {
   file.exists(paths) & file.info(paths)$isdir
 }
 
+# Removes empty directory (vectorized). This is needed because file.remove()
+# on Unix will remove empty directories, but on Windows, it will not. On
+# Windows, you would need to use unlink(recursive=TRUE), which is not very
+# safe. This function does it safely on Unix and Windows.
+dirRemove <- function(path) {
+  for (p in path) {
+    if (!dirExists(p)) {
+      stop("Cannot remove non-existent directory ", p, ".")
+    }
+    if (length(dir(p, all.files = TRUE, no.. = TRUE)) != 0) {
+      stop("Cannot remove non-empty directory ", p, ".")
+    }
+    result <- unlink(p, recursive = TRUE)
+    if (result == 1) {
+      stop("Error removing directory ", p, ".")
+    }
+  }
+}
+
 # Attempt to join a path and relative path, and turn the result into a
 # (normalized) absolute path. The result will only be returned if it is an
 # existing file/directory and is a descendant of dir.
@@ -638,6 +681,9 @@ Callbacks <- R6Class(
       .callbacks <<- Map$new()
     },
     register = function(callback) {
+      if (!is.function(callback)) {
+        stop("callback must be a function")
+      }
       id <- as.character(.nextId)
       .nextId <<- .nextId - 1L
       .callbacks$set(id, callback)
@@ -1094,6 +1140,7 @@ reactiveStop <- function(message = "", class = NULL) {
 #' @examples
 #' ## Only run examples in interactive R sessions
 #' if (interactive()) {
+#' options(device.ask.default = FALSE)
 #'
 #' ui <- fluidPage(
 #'   checkboxGroupInput('in1', 'Check some letters', choices = head(LETTERS)),
@@ -1196,7 +1243,7 @@ need <- function(expr, message = paste(label, "must be provided"), label) {
 #' \strong{Truthy and falsy values}
 #'
 #' The terms "truthy" and "falsy" generally indicate whether a value, when
-#' coerced to a \code{\link{logical}}, is \code{TRUE} or \code{FALSE}. We use
+#' coerced to a \code{\link[base]{logical}}, is \code{TRUE} or \code{FALSE}. We use
 #' the term a little loosely here; our usage tries to match the intuitive
 #' notions of "Is this value missing or available?", or "Has the user provided
 #' an answer?", or in the case of action buttons, "Has the button been
@@ -1504,7 +1551,10 @@ writeUTF8 <- function(text, ...) {
   writeLines(text, ..., useBytes = TRUE)
 }
 
-URLdecode <- decodeURIComponent
+URLdecode <- function(value) {
+  decodeURIComponent(value)
+}
+
 URLencode <- function(value, reserved = FALSE) {
   value <- enc2utf8(value)
   if (reserved) encodeURIComponent(value) else encodeURI(value)
@@ -1550,3 +1600,143 @@ Mutable <- R6Class("Mutable",
     get = function() { private$value }
   )
 )
+
+# More convenient way of chaining together promises than then/catch/finally,
+# without the performance impact of %...>%.
+promise_chain <- function(promise, ..., catch = NULL, finally = NULL,
+  domain = NULL, replace = FALSE) {
+
+  do <- function() {
+    p <- Reduce(function(memo, func) {
+      promises::then(memo, func)
+    }, list(...), promise)
+
+    if (!is.null(catch)) {
+      p <- promises::catch(p, catch)
+    }
+
+    if (!is.null(finally)) {
+      p <- promises::finally(p, finally)
+    }
+
+    p
+  }
+
+  if (!is.null(domain)) {
+    promises::with_promise_domain(domain, do(), replace = replace)
+  } else {
+    do()
+  }
+}
+
+# Like promise_chain, but if `expr` returns a non-promise, then `...`, `catch`,
+# and `finally` are all executed synchronously
+hybrid_chain <- function(expr, ..., catch = NULL, finally = NULL,
+  domain = NULL, replace = FALSE) {
+
+  do <- function() {
+    runFinally <- TRUE
+    tryCatch(
+      {
+        captureStackTraces({
+          result <- withVisible(force(expr))
+          if (promises::is.promising(result$value)) {
+            # Purposefully NOT including domain (nor replace), as we're already in
+            # the domain at this point
+            p <- promise_chain(setVisible(result), ..., catch = catch, finally = finally)
+            runFinally <- FALSE
+            p
+          } else {
+            result <- Reduce(function(v, func) {
+              if (".visible" %in% names(formals(func))) {
+                withVisible(func(v$value, .visible = v$visible))
+              } else {
+                withVisible(func(v$value))
+              }
+            }, list(...), result)
+
+            setVisible(result)
+          }
+        })
+      },
+      error = function(e) {
+        if (!is.null(catch))
+          catch(e)
+        else
+          stop(e)
+      },
+      finally = if (runFinally && !is.null(finally)) finally()
+    )
+  }
+
+  if (!is.null(domain)) {
+    promises::with_promise_domain(domain, do(), replace = replace)
+  } else {
+    do()
+  }
+}
+
+# Returns `value` with either `invisible()` applied or not, depending on the
+# value of `visible`.
+#
+# If the `visible` is missing, then `value` should be a list as returned from
+# `withVisible()`, and that visibility will be applied.
+setVisible <- function(value, visible) {
+  if (missing(visible)) {
+    visible <- value$visible
+    value <- value$value
+  }
+
+  if (!visible) {
+    invisible(value)
+  } else {
+    (value)
+  }
+}
+
+createVarPromiseDomain <- function(env, name, value) {
+  force(env)
+  force(name)
+  force(value)
+
+  promises::new_promise_domain(
+    wrapOnFulfilled = function(onFulfilled) {
+      function(...) {
+        orig <- env[[name]]
+        env[[name]] <- value
+        on.exit(env[[name]] <- orig)
+
+        onFulfilled(...)
+      }
+    },
+    wrapOnRejected = function(onRejected) {
+      function(...) {
+        orig <- env[[name]]
+        env[[name]] <- value
+        on.exit(env[[name]] <- orig)
+
+        onRejected(...)
+      }
+    },
+    wrapSync = function(expr) {
+      orig <- env[[name]]
+      env[[name]] <- value
+      on.exit(env[[name]] <- orig)
+
+      force(expr)
+    }
+  )
+}
+
+getSliderType <- function(min, max, value) {
+  vals <- dropNulls(list(value, min, max))
+  type <- unique(lapply(vals, function(x) {
+    if      (inherits(x, "Date"))   "date"
+    else if (inherits(x, "POSIXt")) "datetime"
+    else                            "number"
+  }))
+  if (length(type) > 1) {
+    stop("Type mismatch for `min`, `max`, and `value`. Each must be Date, POSIXt, or number.")
+  }
+  type[[1]]
+}

README.md

@@ -8,15 +8,17 @@ Shiny is a new package from RStudio that makes it incredibly easy to build inter
 
 For an introduction and examples, visit the [Shiny Dev Center](http://shiny.rstudio.com/).
 
+If you have general questions about using Shiny, please use the [RStudio Community website](https://community.rstudio.com). For bug reports, please use the [issue tracker](https://github.com/rstudio/shiny/issues).
+
 ## Features
 
 * Build useful web applications with only a few lines of code—no JavaScript required.
 * Shiny applications are automatically "live" in the same way that spreadsheets are live. Outputs change instantly as users modify inputs, without requiring a reload of the browser.
 * Shiny user interfaces can be built entirely using R, or can be written directly in HTML, CSS, and JavaScript for more flexibility.
 * Works in any R environment (Console R, Rgui for Windows or Mac, ESS, StatET, RStudio, etc.).
-* Attractive default UI theme based on [Bootstrap](http://getbootstrap.com/2.3.2/).
+* Attractive default UI theme based on [Bootstrap](http://getbootstrap.com/).
 * A highly customizable slider widget with built-in support for animation.
-* Pre-built output widgets for displaying plots, tables, and printed output of R objects.
+* Prebuilt output widgets for displaying plots, tables, and printed output of R objects.
 * Fast bidirectional communication between the web browser and R using the [httpuv](https://github.com/rstudio/httpuv) package.
 * Uses a [reactive](http://en.wikipedia.org/wiki/Reactive_programming) programming model that eliminates messy event handling code, so you can focus on the code that really matters.
 * Develop and redistribute your own Shiny widgets that other developers can easily drop into their own applications (coming soon!).
@@ -41,8 +43,6 @@ devtools::install_github("rstudio/shiny")
 
 To learn more we highly recommend you check out the [Shiny Tutorial](http://shiny.rstudio.com/tutorial/). The tutorial explains the framework in-depth, walks you through building a simple application, and includes extensive annotated examples.
 
-We hope you enjoy using Shiny. If you have general questions about using Shiny, please use the Shiny [mailing list](https://groups.google.com/forum/#!forum/shiny-discuss). For bug reports, please use the [issue tracker](https://github.com/rstudio/shiny/issues).
-
 ## Bootstrap 3 migration
 
 Shiny versions 0.10.2.2 and below used the Bootstrap 2 web framework. After 0.10.2.2, Shiny switched to Bootstrap 3. For most users, the upgrade should be seamless. However, if you have have customized your HTML-generating code to use features specific to Bootstrap 2, you may need to update your code to work with Bootstrap 3.
@@ -59,6 +59,10 @@ devtools::install_version("shiny", version = "0.10.2.2")
 
 The Javascript code in Shiny is minified using tools that run on Node.js. See the tools/ directory for more information.
 
+## Guidelines for contributing
+
+We welcome contributions to the **shiny** package. Please see our [CONTRIBUTING.md](CONTRIBUTING.md) file for detailed guidelines of how to contribute.
+
 ## License
 
 The shiny package is licensed under the GPLv3. See these files in the inst directory for additional details:

TODO-promises.md

@@ -0,0 +1,54 @@
+# Promises TODO
+
+## Documentation
+
+- [x] Motivation -- why should I care about async? Why shouldn't I (what are the limitations)?
+- [x] High level technical overview
+- [ ] Cookbook-style examples
+- [ ] Top-down porting of a sync app to async
+
+## Core API
+- [x] Should as.promise() convert regular values to promises? Or throw?
+  - [x] If as.promise() doesn't convert regular values to promises, add promise_resolved(value) and promise_rejected(err) functions?
+
+## later
+- [ ] Add support for multiple event loops
+- [x] Add timeout to run_now
+
+## Error handling/debugging
+- [ ] ..stacktraceon../..stacktraceoff.. and stack traces in general
+- [x] long stack traces
+  - [x] require opt-in
+- [ ] options(shiny.error) should work in promise handlers
+- [x] Detect when reactives are used across process boundaries, and error
+
+## Render functions
+- [x] Non-async render functions should have their code all execute on the current tick. Otherwise order of execution will be surprising if they have side effects and explicit priorities.
+- [x] Promise domains should maybe have an onExecute, for the "sync" part that kicks off async operations to also have wrapping behavior (like capturing output). Right now, I have to start off renderPrint with promise(~resolve(TRUE)) and then execute the user code in a then(), just to get the promise behavior. Same will be true when we tackle error handling (stack trace capture).
+- [x] invisible() doesn't seem to be working correctly with renderPrint. .visible doesn't survive promise chaining, e.g. promise(~resolve(promise(~resolve(invisible("Hi"))))) %>% then(function(x, .visible) { cat(.visible) }) will print TRUE, not FALSE.
+- [x] renderDataTable should support async
+- [x] Support downloadHandler
+  - [ ] Support async filename?
+  - [x] Should prevent session from continuing until download completes (ref count)
+
+## Flush lifecycle
+- [x] While async operations are running in a session, hold off on any further processing of inputs and scheduled task items until all operations are complete.
+- [x] Hold all outputs/errors until async operations are complete.
+- [ ] Allow both sync and async outputs to be displayed before all outputs are done. (opt-in)
+
+## Testing
+- [x] App that tests that all built-in render functions support async
+- [x] Apps that test flush lifecycle, including onFlushed(once = FALSE)
+- [x] Apps that test invisible() behavior for renderPrint, both sync and async
+- [x] Apps that ensure all render functions execute synchronous code before tick is over
+- [x] App that tests async downloadHandler
+- [x] App that verifies inputs/timers don't fire for a session while it has async operations pending
+- [x] App that verifies req(FALSE), req(FALSE, cancelOutput = TRUE), validate/need, etc. all work in async
+
+## External packages
+- [x] DT
+- [x] htmlwidgets: Don't require async-aware version of Shiny if not using async
+- [x] Plotly
+
+## Bugs
+- [x] req(FALSE, cancelOutput = TRUE) shows grey (even without async)

appveyor.yml

@@ -10,6 +10,9 @@ init:
 install:
   ps: Bootstrap
 
+cache:
+  - C:\RLibrary
+
 # Adapt as necessary starting from here
 
 build_script:
@@ -40,3 +43,7 @@ artifacts:
 
   - path: '\*_*.zip'
     name: Bits
+
+environment:
+  global:
+    USE_RTOOLS: true

inst/examples/01_hello/Readme.md

@@ -1,4 +1,3 @@
-This small Shiny application demonstrates Shiny's automatic UI updates. Move
-the *Number of bins* slider and notice how the `renderPlot` expression is
-automatically re-evaluated when its dependant, `input$bins`, changes,
-causing a histogram with a new number of bins to be rendered.
+This small Shiny application demonstrates Shiny's automatic UI updates. 
+
+Move the *Number of bins* slider and notice how the `renderPlot` expression is automatically re-evaluated when its dependant, `input$bins`, changes, causing a histogram with a new number of bins to be rendered.

inst/examples/01_hello/app.R

@@ -0,0 +1,59 @@
+library(shiny)
+
+# Define UI for app that draws a histogram ----
+ui <- fluidPage(
+
+  # App title ----
+  titlePanel("Hello Shiny!"),
+
+  # Sidebar layout with input and output definitions ----
+  sidebarLayout(
+
+    # Sidebar panel for inputs ----
+    sidebarPanel(
+
+      # Input: Slider for the number of bins ----
+      sliderInput(inputId = "bins",
+                  label = "Number of bins:",
+                  min = 1,
+                  max = 50,
+                  value = 30)
+
+    ),
+
+    # Main panel for displaying outputs ----
+    mainPanel(
+
+      # Output: Histogram ----
+      plotOutput(outputId = "distPlot")
+
+    )
+  )
+)
+
+# Define server logic required to draw a histogram ----
+server <- function(input, output) {
+
+  # Histogram of the Old Faithful Geyser Data ----
+  # with requested number of bins
+  # This expression that generates a histogram is wrapped in a call
+  # to renderPlot to indicate that:
+  #
+  # 1. It is "reactive" and therefore should be automatically
+  #    re-executed when inputs (input$bins) change
+  # 2. Its output type is a plot
+  output$distPlot <- renderPlot({
+
+    x    <- faithful$waiting
+    bins <- seq(min(x), max(x), length.out = input$bins + 1)
+
+    hist(x, breaks = bins, col = "#75AADB", border = "white",
+         xlab = "Waiting time to next eruption (in mins)",
+         main = "Histogram of waiting times")
+
+    })
+
+}
+
+# Create Shiny app ----
+shinyApp(ui = ui, server = server)

inst/examples/01_hello/rsconnect/localhost/admin/01_hello.dcf

@@ -1,6 +0,0 @@
-name: 01_hello
-account: admin
-server: localhost
-bundleId: 1
-url: http://localhost:3939/admin/01_hello/
-when: 1436550957.65385

inst/examples/01_hello/server.R

@@ -1,21 +0,0 @@
-library(shiny)
-
-# Define server logic required to draw a histogram
-function(input, output) {
-
-  # Expression that generates a histogram. The expression is
-  # wrapped in a call to renderPlot to indicate that:
-  #
-  #  1) It is "reactive" and therefore should be automatically
-  #     re-executed when inputs change
-  #  2) Its output type is a plot
-
-  output$distPlot <- renderPlot({
-    x    <- faithful[, 2]  # Old Faithful Geyser data
-    bins <- seq(min(x), max(x), length.out = input$bins + 1)
-
-    # draw the histogram with the specified number of bins
-    hist(x, breaks = bins, col = 'darkgray', border = 'white')
-  })
-
-}

inst/examples/01_hello/ui.R

@@ -1,24 +0,0 @@
-library(shiny)
-
-# Define UI for application that draws a histogram
-fluidPage(
-
-  # Application title
-  titlePanel("Hello Shiny!"),
-
-  # Sidebar with a slider input for the number of bins
-  sidebarLayout(
-    sidebarPanel(
-      sliderInput("bins",
-                  "Number of bins:",
-                  min = 1,
-                  max = 50,
-                  value = 30)
-    ),
-
-    # Show a plot of the generated distribution
-    mainPanel(
-      plotOutput("distPlot")
-    )
-  )
-)

inst/examples/02_text/Readme.md

@@ -1 +1 @@
-This example demonstrates output of raw text from R using the `renderPrint` function in `server.R` and the `verbatimTextOutput` function in `ui.R`. In this case, a textual summary of the data is shown using R's built-in `summary` function. 
+This example demonstrates output of raw text from R using the `renderPrint` function in `server` and the `verbatimTextOutput` function in `ui`. In this case, a textual summary of the data is shown using R's built-in `summary` function. 

inst/examples/02_text/app.R

@@ -0,0 +1,64 @@
+library(shiny)
+
+# Define UI for dataset viewer app ----
+ui <- fluidPage(
+
+  # App title ----
+  titlePanel("Shiny Text"),
+
+  # Sidebar layout with a input and output definitions ----
+  sidebarLayout(
+
+    # Sidebar panel for inputs ----
+    sidebarPanel(
+
+      # Input: Selector for choosing dataset ----
+      selectInput(inputId = "dataset",
+                  label = "Choose a dataset:",
+                  choices = c("rock", "pressure", "cars")),
+
+      # Input: Numeric entry for number of obs to view ----
+      numericInput(inputId = "obs",
+                   label = "Number of observations to view:",
+                   value = 10)
+    ),
+
+    # Main panel for displaying outputs ----
+    mainPanel(
+
+      # Output: Verbatim text for data summary ----
+      verbatimTextOutput("summary"),
+
+      # Output: HTML table with requested number of observations ----
+      tableOutput("view")
+
+    )
+  )
+)
+
+# Define server logic to summarize and view selected dataset ----
+server <- function(input, output) {
+
+  # Return the requested dataset ----
+  datasetInput <- reactive({
+    switch(input$dataset,
+           "rock" = rock,
+           "pressure" = pressure,
+           "cars" = cars)
+  })
+
+  # Generate a summary of the dataset ----
+  output$summary <- renderPrint({
+    dataset <- datasetInput()
+    summary(dataset)
+  })
+
+  # Show the first "n" observations ----
+  output$view <- renderTable({
+    head(datasetInput(), n = input$obs)
+  })
+
+}
+
+# Create Shiny app ----
+shinyApp(ui = ui, server = server)

inst/examples/02_text/server.R

@@ -1,26 +0,0 @@
-library(shiny)
-library(datasets)
-
-# Define server logic required to summarize and view the selected
-# dataset
-function(input, output) {
-  
-  # Return the requested dataset
-  datasetInput <- reactive({
-    switch(input$dataset,
-           "rock" = rock,
-           "pressure" = pressure,
-           "cars" = cars)
-  })
-  
-  # Generate a summary of the dataset
-  output$summary <- renderPrint({
-    dataset <- datasetInput()
-    summary(dataset)
-  })
-  
-  # Show the first "n" observations
-  output$view <- renderTable({
-    head(datasetInput(), n = input$obs)
-  })
-}

inst/examples/02_text/ui.R

@@ -1,27 +0,0 @@
-library(shiny)
-
-# Define UI for dataset viewer application
-fluidPage(
-  
-  # Application title
-  titlePanel("Shiny Text"),
-  
-  # Sidebar with controls to select a dataset and specify the
-  # number of observations to view
-  sidebarLayout(
-    sidebarPanel(
-      selectInput("dataset", "Choose a dataset:", 
-                  choices = c("rock", "pressure", "cars")),
-      
-      numericInput("obs", "Number of observations to view:", 10)
-    ),
-    
-    # Show a summary of the dataset and an HTML table with the 
-	 # requested number of observations
-    mainPanel(
-      verbatimTextOutput("summary"),
-      
-      tableOutput("view")
-    )
-  )
-)

inst/examples/03_reactivity/Readme.md

@@ -1,5 +1,5 @@
-This example demonstrates a core feature of Shiny: **reactivity**. In `server.R`, a reactive called `datasetInput` is declared. 
+This example demonstrates a core feature of Shiny: **reactivity**. In the `server` function, a reactive called `datasetInput` is declared. 
 
-Notice that the reactive expression depends on the input expression `input$dataset`, and that it's used by both the output expression `output$summary` and `output$view`. Try changing the dataset (using *Choose a dataset*) while looking at the reactive and then at the outputs; you will see first the reactive and then its dependencies flash. 
+Notice that the reactive expression depends on the input expression `input$dataset`, and that it's used by two output expressions: `output$summary` and `output$view`. Try changing the dataset (using *Choose a dataset*) while looking at the reactive and then at the outputs; you will see first the reactive and then its dependencies flash. 
 
 Notice also that the reactive expression doesn't just update whenever anything changes--only the inputs it depends on will trigger an update. Change the "Caption" field and notice how only the `output$caption` expression is re-evaluated; the reactive and its dependents are left alone.

inst/examples/03_reactivity/app.R

@@ -0,0 +1,102 @@
+library(shiny)
+
+# Define UI for dataset viewer app ----
+ui <- fluidPage(
+
+  # App title ----
+  titlePanel("Reactivity"),
+
+  # Sidebar layout with input and output definitions ----
+  sidebarLayout(
+
+    # Sidebar panel for inputs ----
+    sidebarPanel(
+
+      # Input: Text for providing a caption ----
+      # Note: Changes made to the caption in the textInput control
+      # are updated in the output area immediately as you type
+      textInput(inputId = "caption",
+                label = "Caption:",
+                value = "Data Summary"),
+
+      # Input: Selector for choosing dataset ----
+      selectInput(inputId = "dataset",
+                  label = "Choose a dataset:",
+                  choices = c("rock", "pressure", "cars")),
+
+      # Input: Numeric entry for number of obs to view ----
+      numericInput(inputId = "obs",
+                   label = "Number of observations to view:",
+                   value = 10)
+
+    ),
+
+    # Main panel for displaying outputs ----
+    mainPanel(
+
+      # Output: Formatted text for caption ----
+      h3(textOutput("caption", container = span)),
+
+      # Output: Verbatim text for data summary ----
+      verbatimTextOutput("summary"),
+
+      # Output: HTML table with requested number of observations ----
+      tableOutput("view")
+
+    )
+  )
+)
+
+# Define server logic to summarize and view selected dataset ----
+server <- function(input, output) {
+
+  # Return the requested dataset ----
+  # By declaring datasetInput as a reactive expression we ensure
+  # that:
+  #
+  # 1. It is only called when the inputs it depends on changes
+  # 2. The computation and result are shared by all the callers,
+  #    i.e. it only executes a single time
+  datasetInput <- reactive({
+    switch(input$dataset,
+           "rock" = rock,
+           "pressure" = pressure,
+           "cars" = cars)
+  })
+
+  # Create caption ----
+  # The output$caption is computed based on a reactive expression
+  # that returns input$caption. When the user changes the
+  # "caption" field:
+  #
+  # 1. This function is automatically called to recompute the output
+  # 2. New caption is pushed back to the browser for re-display
+  #
+  # Note that because the data-oriented reactive expressions
+  # below don't depend on input$caption, those expressions are
+  # NOT called when input$caption changes
+  output$caption <- renderText({
+    input$caption
+  })
+
+  # Generate a summary of the dataset ----
+  # The output$summary depends on the datasetInput reactive
+  # expression, so will be re-executed whenever datasetInput is
+  # invalidated, i.e. whenever the input$dataset changes
+  output$summary <- renderPrint({
+    dataset <- datasetInput()
+    summary(dataset)
+  })
+
+  # Show the first "n" observations ----
+  # The output$view depends on both the databaseInput reactive
+  # expression and input$obs, so it will be re-executed whenever
+  # input$dataset or input$obs is changed
+  output$view <- renderTable({
+    head(datasetInput(), n = input$obs)
+  })
+
+}
+
+# Create Shiny app ----
+shinyApp(ui, server)

inst/examples/03_reactivity/server.R

@@ -1,53 +0,0 @@
-library(shiny)
-library(datasets)
-
-# Define server logic required to summarize and view the selected
-# dataset
-function(input, output) {
-
-  # By declaring datasetInput as a reactive expression we ensure 
-  # that:
-  #
-  #  1) It is only called when the inputs it depends on changes
-  #  2) The computation and result are shared by all the callers 
-  #	  (it only executes a single time)
-  #
-  datasetInput <- reactive({
-    switch(input$dataset,
-           "rock" = rock,
-           "pressure" = pressure,
-           "cars" = cars)
-  })
-  
-  # The output$caption is computed based on a reactive expression
-  # that returns input$caption. When the user changes the
-  # "caption" field:
-  #
-  #  1) This function is automatically called to recompute the 
-  #     output 
-  #  2) The new caption is pushed back to the browser for 
-  #     re-display
-  # 
-  # Note that because the data-oriented reactive expressions
-  # below don't depend on input$caption, those expressions are
-  # NOT called when input$caption changes.
-  output$caption <- renderText({
-    input$caption
-  })
-  
-  # The output$summary depends on the datasetInput reactive
-  # expression, so will be re-executed whenever datasetInput is
-  # invalidated
-  # (i.e. whenever the input$dataset changes)
-  output$summary <- renderPrint({
-    dataset <- datasetInput()
-    summary(dataset)
-  })
-  
-  # The output$view depends on both the databaseInput reactive
-  # expression and input$obs, so will be re-executed whenever
-  # input$dataset or input$obs is changed. 
-  output$view <- renderTable({
-    head(datasetInput(), n = input$obs)
-  })
-}

inst/examples/03_reactivity/ui.R

@@ -1,34 +0,0 @@
-library(shiny)
-
-# Define UI for dataset viewer application
-fluidPage(
-  
-  # Application title
-  titlePanel("Reactivity"),
-  
-  # Sidebar with controls to provide a caption, select a dataset,
-  # and specify the number of observations to view. Note that
-  # changes made to the caption in the textInput control are
-  # updated in the output area immediately as you type
-  sidebarLayout(
-    sidebarPanel(
-      textInput("caption", "Caption:", "Data Summary"),
-      
-      selectInput("dataset", "Choose a dataset:", 
-                  choices = c("rock", "pressure", "cars")),
-      
-      numericInput("obs", "Number of observations to view:", 10)
-    ),
-    
-    
-    # Show the caption, a summary of the dataset and an HTML 
-	 # table with the requested number of observations
-    mainPanel(
-      h3(textOutput("caption", container = span)),
-      
-      verbatimTextOutput("summary"), 
-      
-      tableOutput("view")
-    )
-  )
-)

inst/examples/04_mpg/Readme.md

@@ -1,4 +1,4 @@
 This example demonstrates the following concepts:
 
-* **Global variables**: The `mpgData` variable is declared outside the `shinyServer` function. This makes it available anywhere inside `shinyServer`. The code in `server.R` outside `shinyServer` is only run once when the app starts up, so it can't contain user input.
-* **Reactive expressions**: `formulaText` is a reactive expression. Note how it re-evaluates when the Variable field is changed, but not when the Show Outliers box is ticked. 
+- **Global variables**: The `mpgData` variable is declared outside of the `ui` and `server` function definitions. This makes it available anywhere inside `app.R`. The code in `app.R` outside of `ui` and `server` function definitions is only run once when the app starts up, so it can't contain user input.
+- **Reactive expressions**: `formulaText` is a reactive expression. Note how it re-evaluates when the Variable field is changed, but not when the Show Outliers box is unchecked. 

inst/examples/04_mpg/app.R

@@ -0,0 +1,75 @@
+library(shiny)
+library(datasets)
+
+# Data pre-processing ----
+# Tweak the "am" variable to have nicer factor labels -- since this
+# doesn't rely on any user inputs, we can do this once at startup
+# and then use the value throughout the lifetime of the app
+mpgData <- mtcars
+mpgData$am <- factor(mpgData$am, labels = c("Automatic", "Manual"))
+
+
+# Define UI for miles per gallon app ----
+ui <- fluidPage(
+
+  # App title ----
+  titlePanel("Miles Per Gallon"),
+
+  # Sidebar layout with input and output definitions ----
+  sidebarLayout(
+
+    # Sidebar panel for inputs ----
+    sidebarPanel(
+
+      # Input: Selector for variable to plot against mpg ----
+      selectInput("variable", "Variable:",
+                  c("Cylinders" = "cyl",
+                    "Transmission" = "am",
+                    "Gears" = "gear")),
+
+      # Input: Checkbox for whether outliers should be included ----
+      checkboxInput("outliers", "Show outliers", TRUE)
+
+    ),
+
+    # Main panel for displaying outputs ----
+    mainPanel(
+
+      # Output: Formatted text for caption ----
+      h3(textOutput("caption")),
+
+      # Output: Plot of the requested variable against mpg ----
+      plotOutput("mpgPlot")
+
+    )
+  )
+)
+
+# Define server logic to plot various variables against mpg ----
+server <- function(input, output) {
+
+  # Compute the formula text ----
+  # This is in a reactive expression since it is shared by the
+  # output$caption and output$mpgPlot functions
+  formulaText <- reactive({
+    paste("mpg ~", input$variable)
+  })
+
+  # Return the formula text for printing as a caption ----
+  output$caption <- renderText({
+    formulaText()
+  })
+
+  # Generate a plot of the requested variable against mpg ----
+  # and only exclude outliers if requested
+  output$mpgPlot <- renderPlot({
+    boxplot(as.formula(formulaText()),
+            data = mpgData,
+            outline = input$outliers,
+            col = "#75AADB", pch = 19)
+  })
+
+}
+
+# Create Shiny app ----
+shinyApp(ui, server)

inst/examples/04_mpg/server.R

@@ -1,34 +0,0 @@
-library(shiny)
-library(datasets)
-
-# We tweak the "am" field to have nicer factor labels. Since
-# this doesn't rely on any user inputs we can do this once at
-# startup and then use the value throughout the lifetime of the
-# application
-mpgData <- mtcars
-mpgData$am <- factor(mpgData$am, labels = c("Automatic", "Manual"))
-
-
-# Define server logic required to plot various variables against
-# mpg
-function(input, output) {
-
-  # Compute the formula text in a reactive expression since it is
-  # shared by the output$caption and output$mpgPlot functions
-  formulaText <- reactive({
-    paste("mpg ~", input$variable)
-  })
-
-  # Return the formula text for printing as a caption
-  output$caption <- renderText({
-    formulaText()
-  })
-
-  # Generate a plot of the requested variable against mpg and
-  # only include outliers if requested
-  output$mpgPlot <- renderPlot({
-    boxplot(as.formula(formulaText()),
-            data = mpgData,
-            outline = input$outliers)
-  })
-}

inst/examples/04_mpg/ui.R

@@ -1,29 +0,0 @@
-library(shiny)
-
-# Define UI for miles per gallon application
-fluidPage(
-  
-  # Application title
-  titlePanel("Miles Per Gallon"),
-  
-  # Sidebar with controls to select the variable to plot against
-  # mpg and to specify whether outliers should be included
-  sidebarLayout(
-    sidebarPanel(
-      selectInput("variable", "Variable:",
-                  c("Cylinders" = "cyl",
-                    "Transmission" = "am",
-                    "Gears" = "gear")),
-  
-      checkboxInput("outliers", "Show outliers", FALSE)
-    ),
-    
-	 # Show the caption and plot of the requested variable against
-	 # mpg
-    mainPanel(
-      h3(textOutput("caption")),
-      
-      plotOutput("mpgPlot")
-    )
-  )
-)

inst/examples/05_sliders/app.R

@@ -0,0 +1,86 @@
+library(shiny)
+
+# Define UI for slider demo app ----
+ui <- fluidPage(
+
+  # App title ----
+  titlePanel("Sliders"),
+
+  # Sidebar layout with input and output definitions ----
+  sidebarLayout(
+
+    # Sidebar to demonstrate various slider options ----
+    sidebarPanel(
+
+      # Input: Simple integer interval ----
+      sliderInput("integer", "Integer:",
+                  min = 0, max = 1000,
+                  value = 500),
+
+      # Input: Decimal interval with step value ----
+      sliderInput("decimal", "Decimal:",
+                  min = 0, max = 1,
+                  value = 0.5, step = 0.1),
+
+      # Input: Specification of range within an interval ----
+      sliderInput("range", "Range:",
+                  min = 1, max = 1000,
+                  value = c(200,500)),
+
+      # Input: Custom currency format for with basic animation ----
+      sliderInput("format", "Custom Format:",
+                  min = 0, max = 10000,
+                  value = 0, step = 2500,
+                  pre = "$", sep = ",",
+                  animate = TRUE),
+
+      # Input: Animation with custom interval (in ms) ----
+      # to control speed, plus looping
+      sliderInput("animation", "Looping Animation:",
+                  min = 1, max = 2000,
+                  value = 1, step = 10,
+                  animate =
+                    animationOptions(interval = 300, loop = TRUE))
+
+    ),
+
+    # Main panel for displaying outputs ----
+    mainPanel(
+
+      # Output: Table summarizing the values entered ----
+      tableOutput("values")
+
+    )
+  )
+)
+
+# Define server logic for slider examples ----
+server <- function(input, output) {
+
+  # Reactive expression to create data frame of all input values ----
+  sliderValues <- reactive({
+
+    data.frame(
+      Name = c("Integer",
+               "Decimal",
+               "Range",
+               "Custom Format",
+               "Animation"),
+      Value = as.character(c(input$integer,
+                             input$decimal,
+                             paste(input$range, collapse = " "),
+                             input$format,
+                             input$animation)),
+      stringsAsFactors = FALSE)
+
+  })
+
+  # Show the values in an HTML table ----
+  output$values <- renderTable({
+    sliderValues()
+  })
+
+}
+
+# Create Shiny app ----
+shinyApp(ui, server)

inst/examples/05_sliders/server.R

@@ -1,29 +0,0 @@
-library(shiny)
-
-# Define server logic for slider examples
-function(input, output) {
-  
-  # Reactive expression to compose a data frame containing all of
-  # the values
-  sliderValues <- reactive({
-    
-    # Compose data frame
-    data.frame(
-      Name = c("Integer", 
-               "Decimal",
-               "Range",
-               "Custom Format",
-               "Animation"),
-      Value = as.character(c(input$integer, 
-                             input$decimal,
-                             paste(input$range, collapse=' '),
-                             input$format,
-                             input$animation)), 
-      stringsAsFactors=FALSE)
-  }) 
-  
-  # Show the values using an HTML table
-  output$values <- renderTable({
-    sliderValues()
-  })
-}

inst/examples/05_sliders/ui.R

@@ -1,43 +0,0 @@
-library(shiny)
-
-# Define UI for slider demo application
-fluidPage(
-
-  #  Application title
-  titlePanel("Sliders"),
-
-  # Sidebar with sliders that demonstrate various available
-  # options
-  sidebarLayout(
-    sidebarPanel(
-      # Simple integer interval
-      sliderInput("integer", "Integer:",
-                  min=0, max=1000, value=500),
-
-      # Decimal interval with step value
-      sliderInput("decimal", "Decimal:",
-                  min = 0, max = 1, value = 0.5, step= 0.1),
-
-      # Specification of range within an interval
-      sliderInput("range", "Range:",
-                  min = 1, max = 1000, value = c(200,500)),
-
-      # Provide a custom currency format for value display,
-		# with basic animation
-      sliderInput("format", "Custom Format:",
-                  min = 0, max = 10000, value = 0, step = 2500,
-                  pre = "$", sep = ",", animate=TRUE),
-
-      # Animation with custom interval (in ms) to control speed,
-		# plus looping
-      sliderInput("animation", "Looping Animation:", 1, 2000, 1,
-					  	step = 10, animate=
-							animationOptions(interval=300, loop=TRUE))
-    ),
-
-    # Show a table summarizing the values entered
-    mainPanel(
-      tableOutput("values")
-    )
-  )
-)

inst/examples/06_tabsets/Readme.md

@@ -2,7 +2,7 @@ This example demonstrates the `tabsetPanel` and `tabPanel` widgets.
 
 Notice that outputs that are not visible are not re-evaluated until they become visible. Try this: 
 
-1. Scroll to the bottom of `server.R`
+1. Scroll to the bottom of the `server` function. You might need to use the *show with app* option so you can easily view the code and interact with the app at the same time.
 2. Change the number of observations, and observe that only `output$plot` is evaluated.
 3. Click the Summary tab, and observe that `output$summary` is evaluated.
 4. Change the number of observations again, and observe that now only `output$summary` is evaluated.

inst/examples/06_tabsets/app.R

@@ -0,0 +1,92 @@
+library(shiny)
+
+# Define UI for random distribution app ----
+ui <- fluidPage(
+
+  # App title ----
+  titlePanel("Tabsets"),
+
+  # Sidebar layout with input and output definitions ----
+  sidebarLayout(
+
+    # Sidebar panel for inputs ----
+    sidebarPanel(
+
+      # Input: Select the random distribution type ----
+      radioButtons("dist", "Distribution type:",
+                   c("Normal" = "norm",
+                     "Uniform" = "unif",
+                     "Log-normal" = "lnorm",
+                     "Exponential" = "exp")),
+
+      # br() element to introduce extra vertical spacing ----
+      br(),
+
+      # Input: Slider for the number of observations to generate ----
+      sliderInput("n",
+                  "Number of observations:",
+                  value = 500,
+                  min = 1,
+                  max = 1000)
+
+    ),
+
+    # Main panel for displaying outputs ----
+    mainPanel(
+
+      # Output: Tabset w/ plot, summary, and table ----
+      tabsetPanel(type = "tabs",
+                  tabPanel("Plot", plotOutput("plot")),
+                  tabPanel("Summary", verbatimTextOutput("summary")),
+                  tabPanel("Table", tableOutput("table"))
+      )
+
+    )
+  )
+)
+
+# Define server logic for random distribution app ----
+server <- function(input, output) {
+
+  # Reactive expression to generate the requested distribution ----
+  # This is called whenever the inputs change. The output functions
+  # defined below then use the value computed from this expression
+  d <- reactive({
+    dist <- switch(input$dist,
+                   norm = rnorm,
+                   unif = runif,
+                   lnorm = rlnorm,
+                   exp = rexp,
+                   rnorm)
+
+    dist(input$n)
+  })
+
+  # Generate a plot of the data ----
+  # Also uses the inputs to build the plot label. Note that the
+  # dependencies on the inputs and the data reactive expression are
+  # both tracked, and all expressions are called in the sequence
+  # implied by the dependency graph.
+  output$plot <- renderPlot({
+    dist <- input$dist
+    n <- input$n
+
+    hist(d(),
+         main = paste("r", dist, "(", n, ")", sep = ""),
+         col = "#75AADB", border = "white")
+  })
+
+  # Generate a summary of the data ----
+  output$summary <- renderPrint({
+    summary(d())
+  })
+
+  # Generate an HTML table view of the data ----
+  output$table <- renderTable({
+    d()
+  })
+
+}
+
+# Create Shiny app ----
+shinyApp(ui, server)

inst/examples/06_tabsets/server.R

@@ -1,44 +0,0 @@
-library(shiny)
-
-# Define server logic for random distribution application
-function(input, output) {
-  
-  # Reactive expression to generate the requested distribution.
-  # This is called whenever the inputs change. The output
-  # functions defined below then all use the value computed from
-  # this expression
-  data <- reactive({
-    dist <- switch(input$dist,
-                   norm = rnorm,
-                   unif = runif,
-                   lnorm = rlnorm,
-                   exp = rexp,
-                   rnorm)
-    
-    dist(input$n)
-  })
-  
-  # Generate a plot of the data. Also uses the inputs to build
-  # the plot label. Note that the dependencies on both the inputs
-  # and the data reactive expression are both tracked, and
-  # all expressions are called in the sequence implied by the
-  # dependency graph
-  output$plot <- renderPlot({
-    dist <- input$dist
-    n <- input$n
-    
-    hist(data(), 
-         main=paste('r', dist, '(', n, ')', sep=''))
-  })
-  
-  # Generate a summary of the data
-  output$summary <- renderPrint({
-    summary(data())
-  })
-  
-  # Generate an HTML table view of the data
-  output$table <- renderTable({
-    data.frame(x=data())
-  })
-  
-}

inst/examples/06_tabsets/ui.R

@@ -1,38 +0,0 @@
-library(shiny)
-
-# Define UI for random distribution application 
-fluidPage(
-    
-  # Application title
-  titlePanel("Tabsets"),
-  
-  # Sidebar with controls to select the random distribution type
-  # and number of observations to generate. Note the use of the
-  # br() element to introduce extra vertical spacing
-  sidebarLayout(
-    sidebarPanel(
-      radioButtons("dist", "Distribution type:",
-                   c("Normal" = "norm",
-                     "Uniform" = "unif",
-                     "Log-normal" = "lnorm",
-                     "Exponential" = "exp")),
-      br(),
-      
-      sliderInput("n", 
-                  "Number of observations:", 
-                   value = 500,
-                   min = 1, 
-                   max = 1000)
-    ),
-    
-    # Show a tabset that includes a plot, summary, and table view
-    # of the generated distribution
-    mainPanel(
-      tabsetPanel(type = "tabs", 
-        tabPanel("Plot", plotOutput("plot")), 
-        tabPanel("Summary", verbatimTextOutput("summary")), 
-        tabPanel("Table", tableOutput("table"))
-      )
-    )
-  )
-)

inst/examples/07_widgets/Readme.md

@@ -1 +1 @@
-This example demonstrates some additional widgets included in Shiny, such as `helpText` and `submitButton`. The latter is used to delay rendering output until the user explicitly requests it.
+This example demonstrates some additional widgets included in Shiny, such as `helpText` and `actionButton`. The latter is used to delay rendering output until the user explicitly requests it (a construct which also introduces two important server functions, `eventReactive` and `isolate`).

inst/examples/07_widgets/app.R

@@ -0,0 +1,82 @@
+library(shiny)
+
+# Define UI for dataset viewer app ----
+ui <- fluidPage(
+
+  # App title ----
+  titlePanel("More Widgets"),
+
+  # Sidebar layout with input and output definitions ----
+  sidebarLayout(
+
+    # Sidebar panel for inputs ----
+    sidebarPanel(
+
+      # Input: Select a dataset ----
+      selectInput("dataset", "Choose a dataset:",
+                  choices = c("rock", "pressure", "cars")),
+
+      # Input: Specify the number of observations to view ----
+      numericInput("obs", "Number of observations to view:", 10),
+
+      # Include clarifying text ----
+      helpText("Note: while the data view will show only the specified",
+               "number of observations, the summary will still be based",
+               "on the full dataset."),
+
+      # Input: actionButton() to defer the rendering of output ----
+      # until the user explicitly clicks the button (rather than
+      # doing it immediately when inputs change). This is useful if
+      # the computations required to render output are inordinately
+      # time-consuming.
+      actionButton("update", "Update View")
+
+    ),
+
+    # Main panel for displaying outputs ----
+    mainPanel(
+
+      # Output: Header + summary of distribution ----
+      h4("Summary"),
+      verbatimTextOutput("summary"),
+
+      # Output: Header + table of distribution ----
+      h4("Observations"),
+      tableOutput("view")
+    )
+
+  )
+)
+
+# Define server logic to summarize and view selected dataset ----
+server <- function(input, output) {
+
+  # Return the requested dataset ----
+  # Note that we use eventReactive() here, which depends on
+  # input$update (the action button), so that the output is only
+  # updated when the user clicks the button
+  datasetInput <- eventReactive(input$update, {
+    switch(input$dataset,
+           "rock" = rock,
+           "pressure" = pressure,
+           "cars" = cars)
+  }, ignoreNULL = FALSE)
+
+  # Generate a summary of the dataset ----
+  output$summary <- renderPrint({
+    dataset <- datasetInput()
+    summary(dataset)
+  })
+
+  # Show the first "n" observations ----
+  # The use of isolate() is necessary because we don't want the table
+  # to update whenever input$obs changes (only when the user clicks
+  # the action button)
+  output$view <- renderTable({
+    head(datasetInput(), n = isolate(input$obs))
+  })
+
+}
+
+# Create Shiny app ----
+shinyApp(ui, server)

inst/examples/07_widgets/server.R

@@ -1,26 +0,0 @@
-library(shiny)
-library(datasets)
-
-# Define server logic required to summarize and view the 
-# selected dataset
-function(input, output) {
-  
-  # Return the requested dataset
-  datasetInput <- reactive({
-    switch(input$dataset,
-           "rock" = rock,
-           "pressure" = pressure,
-           "cars" = cars)
-  })
-  
-  # Generate a summary of the dataset
-  output$summary <- renderPrint({
-    dataset <- datasetInput()
-    summary(dataset)
-  })
-  
-  # Show the first "n" observations
-  output$view <- renderTable({
-    head(datasetInput(), n = input$obs)
-  })
-}

inst/examples/07_widgets/ui.R

@@ -1,43 +0,0 @@
-library(shiny)
-
-# Define UI for dataset viewer application
-fluidPage(
-  
-  # Application title.
-  titlePanel("More Widgets"),
-  
-  # Sidebar with controls to select a dataset and specify the
-  # number of observations to view. The helpText function is
-  # also used to include clarifying text. Most notably, the
-  # inclusion of a submitButton defers the rendering of output
-  # until the user explicitly clicks the button (rather than
-  # doing it immediately when inputs change). This is useful if
-  # the computations required to render output are inordinately
-  # time-consuming.
-  sidebarLayout(
-    sidebarPanel(
-      selectInput("dataset", "Choose a dataset:", 
-                  choices = c("rock", "pressure", "cars")),
-      
-      numericInput("obs", "Number of observations to view:", 10),
-      
-      helpText("Note: while the data view will show only the specified",
-               "number of observations, the summary will still be based",
-               "on the full dataset."),
-      
-      submitButton("Update View")
-    ),
-    
-    # Show a summary of the dataset and an HTML table with the
-    # requested number of observations. Note the use of the h4
-    # function to provide an additional header above each output
-    # section.
-    mainPanel(
-      h4("Summary"),
-      verbatimTextOutput("summary"),
-      
-      h4("Observations"),
-      tableOutput("view")
-    )
-  )
-)

inst/examples/08_html/Readme.md

@@ -1,4 +1 @@
-Normally we use the built-in functions, such as `textInput()`, to generate
-the HTML UI in the R script `ui.R`. Actually **shiny** also works with a
-custom HTML page `www/index.html`. See [the
-tutorial](http://rstudio.github.io/shiny/tutorial/#html-ui) for more details.
+Normally we use the built-in functions, such as `textInput()`, to generate the HTML UI in the R script `ui.R`. Actually **shiny** also works with a custom HTML page `www/index.html`. See [the tutorial](http://shiny.rstudio.com/tutorial/) for more details.

inst/examples/08_html/app.R

@@ -0,0 +1,47 @@
+library(shiny)
+
+# Define server logic for random distribution app ----
+server <- function(input, output) {
+
+  # Reactive expression to generate the requested distribution ----
+  # This is called whenever the inputs change. The output functions
+  # defined below then use the value computed from this expression
+  d <- reactive({
+    dist <- switch(input$dist,
+                   norm = rnorm,
+                   unif = runif,
+                   lnorm = rlnorm,
+                   exp = rexp,
+                   rnorm)
+
+    dist(input$n)
+  })
+
+  # Generate a plot of the data ----
+  # Also uses the inputs to build the plot label. Note that the
+  # dependencies on the inputs and the data reactive expression are
+  # both tracked, and all expressions are called in the sequence
+  # implied by the dependency graph.
+  output$plot <- renderPlot({
+    dist <- input$dist
+    n <- input$n
+
+    hist(d(),
+         main = paste("r", dist, "(", n, ")", sep = ""),
+         col = "#75AADB", border = "white")
+  })
+
+  # Generate a summary of the data ----
+  output$summary <- renderPrint({
+    summary(d())
+  })
+
+  # Generate an HTML table view of the head of the data ----
+  output$table <- renderTable({
+    head(data.frame(x = d()))
+  })
+
+}
+
+# Create Shiny app ----
+shinyApp(ui = htmlTemplate("www/index.html"), server)

inst/examples/08_html/server.R

@@ -1,42 +0,0 @@
-library(shiny)
-
-# Define server logic for random distribution application
-function(input, output) {
-  
-  # Reactive expression to generate the requested distribution. This is 
-  # called whenever the inputs change. The output expressions defined 
-  # below then all used the value computed from this expression
-  data <- reactive({
-    dist <- switch(input$dist,
-                   norm = rnorm,
-                   unif = runif,
-                   lnorm = rlnorm,
-                   exp = rexp,
-                   rnorm)
-    
-    dist(input$n)
-  })
-  
-  # Generate a plot of the data. Also uses the inputs to build the 
-  # plot label. Note that the dependencies on both the inputs and
-  # the data reactive expression are both tracked, and all expressions 
-  # are called in the sequence implied by the dependency graph
-  output$plot <- renderPlot({
-    dist <- input$dist
-    n <- input$n
-    
-    hist(data(), 
-         main=paste('r', dist, '(', n, ')', sep=''))
-  })
-  
-  # Generate a summary of the data
-  output$summary <- renderPrint({
-    summary(data())
-  })
-  
-  # Generate an HTML table view of the data
-  output$table <- renderTable({
-    data.frame(x=data())
-  })
-  
-}

inst/examples/08_html/www/index.html

@@ -3,13 +3,13 @@
 <head>
   <script src="shared/jquery.js" type="text/javascript"></script>
   <script src="shared/shiny.js" type="text/javascript"></script>
-  <link rel="stylesheet" type="text/css" href="shared/shiny.css"/> 
+  <link rel="stylesheet" type="text/css" href="shared/shiny.css"/>
 </head>
- 
+
 <body>
 
   <h1>HTML UI</h1>
- 
+
   <p>
     <label>Distribution type:</label><br />
     <select name="dist">
@@ -17,22 +17,25 @@
       <option value="unif">Uniform</option>
       <option value="lnorm">Log-normal</option>
       <option value="exp">Exponential</option>
-    </select> 
+    </select>
   </p>
- 
+
   <p>
- 
-    <label>Number of observations:</label><br /> 
+
+    <label>Number of observations:</label><br />
     <input type="number" name="n" value="500" min="1" max="1000" />
 
   </p>
- 
-  <pre id="summary" class="shiny-text-output"></pre> 
-  
-  <div id="plot" class="shiny-plot-output" 
-       style="width: 100%; height: 400px"></div> 
-  
+
+  <h3>Summary of data:</h3>
+  <pre id="summary" class="shiny-text-output"></pre>
+
+  <h3>Plot of data:</h3>
+  <div id="plot" class="shiny-plot-output"
+       style="width: 100%; height: 300px"></div>
+
+  <h3>Head of data:</h3>
   <div id="table" class="shiny-html-output"></div>
- 
+
 </body>
-</html>
+</html>

inst/examples/09_upload/Readme.md

@@ -1,4 +1,3 @@
 We can add a file upload input in the UI using the function `fileInput()`,
-e.g. `fileInput('foo')`. In `server.R`, we can access the uploaded files via
-`input$foo`. See [the
-tutorial](http://rstudio.github.io/shiny/tutorial/#uploads) for more details.
+e.g. `fileInput('foo')`. In the `server` function, we can access the 
+uploaded files via `input$foo`.

inst/examples/09_upload/app.R

@@ -0,0 +1,92 @@
+library(shiny)
+
+# Define UI for data upload app ----
+ui <- fluidPage(
+
+  # App title ----
+  titlePanel("Uploading Files"),
+
+  # Sidebar layout with input and output definitions ----
+  sidebarLayout(
+
+    # Sidebar panel for inputs ----
+    sidebarPanel(
+
+      # Input: Select a file ----
+      fileInput("file1", "Choose CSV File",
+                multiple = TRUE,
+                accept = c("text/csv",
+                         "text/comma-separated-values,text/plain",
+                         ".csv")),
+
+      # Horizontal line ----
+      tags$hr(),
+
+      # Input: Checkbox if file has header ----
+      checkboxInput("header", "Header", TRUE),
+
+      # Input: Select separator ----
+      radioButtons("sep", "Separator",
+                   choices = c(Comma = ",",
+                               Semicolon = ";",
+                               Tab = "\t"),
+                   selected = ","),
+
+      # Input: Select quotes ----
+      radioButtons("quote", "Quote",
+                   choices = c(None = "",
+                               "Double Quote" = '"',
+                               "Single Quote" = "'"),
+                   selected = '"'),
+
+      # Horizontal line ----
+      tags$hr(),
+
+      # Input: Select number of rows to display ----
+      radioButtons("disp", "Display",
+                   choices = c(Head = "head",
+                               All = "all"),
+                   selected = "head")
+
+    ),
+
+    # Main panel for displaying outputs ----
+    mainPanel(
+
+      # Output: Data file ----
+      tableOutput("contents")
+
+    )
+
+  )
+)
+
+# Define server logic to read selected file ----
+server <- function(input, output) {
+
+  output$contents <- renderTable({
+
+    # input$file1 will be NULL initially. After the user selects
+    # and uploads a file, head of that data file by default,
+    # or all rows if selected, will be shown.
+
+    req(input$file1)
+
+    df <- read.csv(input$file1$datapath,
+             header = input$header,
+             sep = input$sep,
+             quote = input$quote)
+
+    if(input$disp == "head") {
+      return(head(df))
+    }
+    else {
+      return(df)
+    }
+
+  })
+
+}
+
+# Create Shiny app ----
+shinyApp(ui, server)

inst/examples/09_upload/server.R

@@ -1,20 +0,0 @@
-library(shiny)
-
-function(input, output) {
-  output$contents <- renderTable({
-    
-    # input$file1 will be NULL initially. After the user selects
-    # and uploads a file, it will be a data frame with 'name',
-    # 'size', 'type', and 'datapath' columns. The 'datapath'
-    # column will contain the local filenames where the data can
-    # be found.
-
-    inFile <- input$file1
-
-    if (is.null(inFile))
-      return(NULL)
-    
-    read.csv(inFile$datapath, header=input$header, sep=input$sep, 
-				 quote=input$quote)
-  })
-}

inst/examples/09_upload/ui.R

@@ -1,28 +0,0 @@
-library(shiny)
-
-fluidPage(
-  titlePanel("Uploading Files"),
-  sidebarLayout(
-    sidebarPanel(
-      fileInput('file1', 'Choose CSV File',
-                accept=c('text/csv', 
-								 'text/comma-separated-values,text/plain', 
-								 '.csv')),
-      tags$hr(),
-      checkboxInput('header', 'Header', TRUE),
-      radioButtons('sep', 'Separator',
-                   c(Comma=',',
-                     Semicolon=';',
-                     Tab='\t'),
-                   ','),
-      radioButtons('quote', 'Quote',
-                   c(None='',
-                     'Double Quote'='"',
-                     'Single Quote'="'"),
-                   '"')
-    ),
-    mainPanel(
-      tableOutput('contents')
-    )
-  )
-)

inst/examples/10_download/Readme.md

@@ -1,4 +1,2 @@
 We can add a download button to the UI using `downloadButton()`, and write
-the content of the file in `downloadHandler()` in `server.R`. See [the
-tutorial](http://rstudio.github.io/shiny/tutorial/#downloads) for more
-details.
+the content of the file in `downloadHandler()` in the `server` function.

inst/examples/10_download/app.R

@@ -0,0 +1,63 @@
+library(shiny)
+
+# Define UI for data download app ----
+ui <- fluidPage(
+
+  # App title ----
+  titlePanel("Downloading Data"),
+
+  # Sidebar layout with input and output definitions ----
+  sidebarLayout(
+
+    # Sidebar panel for inputs ----
+    sidebarPanel(
+
+      # Input: Choose dataset ----
+      selectInput("dataset", "Choose a dataset:",
+                  choices = c("rock", "pressure", "cars")),
+
+      # Button
+      downloadButton("downloadData", "Download")
+
+    ),
+
+    # Main panel for displaying outputs ----
+    mainPanel(
+
+      tableOutput("table")
+
+    )
+
+  )
+)
+
+# Define server logic to display and download selected file ----
+server <- function(input, output) {
+
+  # Reactive value for selected dataset ----
+  datasetInput <- reactive({
+    switch(input$dataset,
+           "rock" = rock,
+           "pressure" = pressure,
+           "cars" = cars)
+  })
+
+  # Table of selected dataset ----
+  output$table <- renderTable({
+    datasetInput()
+  })
+
+  # Downloadable csv of selected dataset ----
+  output$downloadData <- downloadHandler(
+    filename = function() {
+      paste(input$dataset, ".csv", sep = "")
+    },
+    content = function(file) {
+      write.csv(datasetInput(), file, row.names = FALSE)
+    }
+  )
+
+}
+
+# Create Shiny app ----
+shinyApp(ui, server)

inst/examples/10_download/server.R

@@ -1,21 +0,0 @@
-function(input, output) {
-  datasetInput <- reactive({
-    switch(input$dataset,
-           "rock" = rock,
-           "pressure" = pressure,
-           "cars" = cars)
-  })
-  
-  output$table <- renderTable({
-    datasetInput()
-  })
-  
-  output$downloadData <- downloadHandler(
-    filename = function() { 
-		 paste(input$dataset, '.csv', sep='') 
-	 },
-    content = function(file) {
-      write.csv(datasetInput(), file)
-    }
-  )
-}

inst/examples/10_download/ui.R

@@ -1,13 +0,0 @@
-fluidPage(
-  titlePanel('Downloading Data'),
-  sidebarLayout(
-    sidebarPanel(
-      selectInput("dataset", "Choose a dataset:", 
-                  choices = c("rock", "pressure", "cars")),
-      downloadButton('downloadData', 'Download')
-    ),
-    mainPanel(
-      tableOutput('table')
-    )
-  )
-)

inst/examples/11_timer/app.R

@@ -0,0 +1,21 @@
+library(shiny)
+
+# Define UI for displaying current time ----
+ui <- fluidPage(
+
+  h2(textOutput("currentTime"))
+
+)
+
+# Define server logic to show current time, update every second ----
+server <- function(input, output, session) {
+
+  output$currentTime <- renderText({
+    invalidateLater(1000, session)
+    paste("The current time is", Sys.time())
+  })
+
+}
+
+# Create Shiny app ----
+shinyApp(ui, server)