Update cran-comments

Suppress Bootstrap top margin around radios and checkboxes in Qt5

.Rbuildignore

@@ -7,7 +7,9 @@
 ^run\.R$
 ^\.gitignore$
 ^res$
-^tools$
 ^man-roxygen$
 ^\.travis\.yml$
 ^staticdocs$
+^tools$
+^CONTRIBUTING.md$
+^cran-comments.md$

.Rinstignore

@@ -0,0 +1,2 @@
+^tools$
+^Rmd$

.gitattributes

@@ -0,0 +1 @@
+/NEWS merge=union

.travis.yml

@@ -10,11 +10,12 @@ install:
   - sudo apt-add-repository -y "deb http://cran.rstudio.com/bin/linux/ubuntu `lsb_release -cs`/"
   - sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
   - sudo apt-add-repository -y ppa:marutter/c2d4u
-  - sudo apt-get update
-  - sudo apt-get install r-base-dev r-cran-shiny r-cran-cairo r-cran-markdown
+  - sudo apt-get -qq update
+  - sudo apt-get -qq install r-base r-cran-shiny r-cran-cairo r-cran-devtools r-cran-knitr
   - "[ ! -d ~/R ] && mkdir ~/R"
-  - Rscript -e "install.packages('xtable', repos = 'http://cran.rstudio.org')"
-  - Rscript -e "install.packages('$R_MY_PKG', dep = TRUE, repos = 'http://cran.rstudio.org')"
+  - echo "options(repos = c(CRAN = 'http://cran.rstudio.com'))" > ~/.Rprofile
+  - Rscript -e "update.packages(instlib = '~/R', ask = FALSE, quiet = TRUE)"
+  - Rscript -e "devtools::install_deps(dep = TRUE)"
 
 # run tests
 script:

CONTRIBUTING.md

@@ -0,0 +1,10 @@
+
+We welcome contributions to the **shiny** package. To submit a contribution:
+
+1. [Fork](https://github.com/rstudio/shiny/fork) the repository and make your changes.
+
+2. Ensure that you have signed the [individual](http://www.rstudio.com/wp-content/uploads/2014/06/RStudioIndividualContributorAgreement.pdf) or [corporate](http://www.rstudio.com/wp-content/uploads/2014/06/RStudioCorporateContributorAgreement.pdf) contributor agreement as appropriate. You can send the signed copy to jj@rstudio.com.
+
+3. Submit a [pull request](https://help.github.com/articles/using-pull-requests).
+
+We'll try to be as responsive as possible in reviewing and accepting pull requests. We appreciate your contributions!

DESCRIPTION

@@ -1,56 +1,109 @@
 Package: shiny
 Type: Package
 Title: Web Application Framework for R
-Version: 0.9.1
-Date: 2014-03-19
-Author: RStudio, Inc.
-Maintainer: Winston Chang <winston@rstudio.com>
+Version: 0.11
+Date: 2015-01-08
+Authors@R: c(
+    person("Winston", "Chang", role = c("aut", "cre"), email = "winston@rstudio.com"),
+    person(family = "RStudio", role = "cph"),
+    person(family = "jQuery Foundation", role = "cph",
+    comment = "jQuery library and jQuery UI library"),
+    person(family = "jQuery contributors", role = c("ctb", "cph"),
+    comment = "jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt"),
+    person(family = "jQuery UI contributors", role = c("ctb", "cph"),
+    comment = "jQuery UI library; authors listed in inst/www/shared/jqueryui/1.10.4/AUTHORS.txt"),
+    person("Mark", "Otto", role = "ctb",
+    comment = "Bootstrap library"),
+    person("Jacob", "Thornton", role = "ctb",
+    comment = "Bootstrap library"),
+    person(family = "Bootstrap contributors", role = "ctb",
+    comment = "Bootstrap library"),
+    person(family = "Twitter, Inc", role = "cph",
+    comment = "Bootstrap library"),
+    person("Alexander", "Farkas", role = c("ctb", "cph"),
+    comment = "html5shiv library"),
+    person("Scott", "Jehl", role = c("ctb", "cph"),
+    comment = "Respond.js library"),
+    person("Stefan", "Petre", role = c("ctb", "cph"),
+    comment = "Bootstrap-datepicker library"),
+    person("Andrew", "Rowls", role = c("ctb", "cph"),
+    comment = "Bootstrap-datepicker library"),
+    person("Dave", "Gandy", role = c("ctb", "cph"),
+    comment = "Font-Awesome font"),
+    person("Brian", "Reavis", role = c("ctb", "cph"),
+    comment = "selectize.js library"),
+    person("Kristopher Michael", "Kowal", role = c("ctb", "cph"),
+    comment = "es5-shim library"),
+    person(family = "es5-shim contributors", role = c("ctb", "cph"),
+    comment = "es5-shim library"),
+    person("Denis", "Ineshin", role = c("ctb", "cph"),
+    comment = "ion.rangeSlider library"),
+    person(family = "SpryMedia Limited", role = c("ctb", "cph"),
+    comment = "DataTables library"),
+    person("John", "Fraser", role = c("ctb", "cph"),
+    comment = "showdown.js library"),
+    person("John", "Gruber", role = c("ctb", "cph"),
+    comment = "showdown.js library"),
+    person("Ivan", "Sagalaev", role = c("ctb", "cph"),
+    comment = "highlight.js library"),
+    person(family = "R Core Team", role = c("ctb", "cph"),
+    comment = "tar implementation from R")
+    )
 Description: Shiny makes it incredibly easy to build interactive web
     applications with R. Automatic "reactive" binding between inputs and
     outputs and extensive pre-built widgets make it possible to build
     beautiful, responsive, and powerful applications with minimal effort.
-License: GPL-3
+License: GPL-3 | file LICENSE
 Depends:
-    R (>= 2.14.1),
-    methods
+    R (>= 3.0.0)
 Imports:
-    stats,
     tools,
     utils,
-    httpuv (>= 1.2.0),
-    caTools,
+    httpuv (>= 1.3.2),
+    mime (>= 0.1.3),
     RJSONIO,
     xtable,
-    digest
+    digest,
+    htmltools (>= 0.2.6),
+    R6 (>= 2.0)
 Suggests:
     datasets,
-    markdown,
     Cairo (>= 1.5-5),
-    testthat
-URL: http://www.rstudio.com/shiny/
+    testthat,
+    knitr (>= 1.6),
+    markdown
+URL: http://shiny.rstudio.com
 BugReports: https://github.com/rstudio/shiny/issues
 Collate:
+    'app.R'
     'bootstrap-layout.R'
+    'map.R'
+    'globals.R'
+    'utils.R'
     'bootstrap.R'
     'cache.R'
-    'map.R'
     'fileupload.R'
+    'stack.R'
     'graph.R'
     'hooks.R'
+    'html-deps.R'
+    'htmltools.R'
     'imageutils.R'
     'jqueryui.R'
+    'middleware-shiny.R'
+    'middleware.R'
     'priorityqueue.R'
+    'progress.R'
     'react.R'
+    'reactive-domains.R'
     'reactives.R'
     'run-url.R'
-    'sessioncontext.R'
-    'utils.R'
+    'server.R'
     'shiny.R'
     'shinyui.R'
     'shinywrappers.R'
     'showcase.R'
     'slider.R'
-    'tags.R'
     'tar.R'
     'timer.R'
     'update-input.R'

NAMESPACE

@@ -1,4 +1,4 @@
-# Generated by roxygen2 (4.0.0): do not edit by hand
+# Generated by roxygen2 (4.1.0): do not edit by hand
 
 S3method("$",reactivevalues)
 S3method("$",shinyoutput)
@@ -13,23 +13,25 @@ S3method("[[",shinyoutput)
 S3method("[[<-",reactivevalues)
 S3method("[[<-",shinyoutput)
 S3method("names<-",reactivevalues)
-S3method(as.character,shiny.tag)
-S3method(as.character,shiny.tag.list)
 S3method(as.list,reactivevalues)
-S3method(format,html)
-S3method(format,shiny.tag)
-S3method(format,shiny.tag.list)
+S3method(as.shiny.appobj,character)
+S3method(as.shiny.appobj,list)
+S3method(as.shiny.appobj,shiny.appobj)
+S3method(as.tags,shiny.appobj)
+S3method(as.tags,shiny.render.function)
 S3method(names,reactivevalues)
-S3method(print,html)
 S3method(print,reactive)
-S3method(print,shiny.tag)
-S3method(print,shiny.tag.list)
+S3method(print,shiny.appobj)
+S3method(str,reactivevalues)
 export(HTML)
+export(Progress)
 export(a)
 export(absolutePanel)
 export(actionButton)
+export(actionLink)
 export(addResourcePath)
 export(animationOptions)
+export(as.shiny.appobj)
 export(basicPage)
 export(bootstrapPage)
 export(br)
@@ -38,6 +40,7 @@ export(checkboxInput)
 export(code)
 export(column)
 export(conditionalPanel)
+export(createWebDependency)
 export(dataTableOutput)
 export(dateInput)
 export(dateRangeInput)
@@ -46,13 +49,16 @@ export(downloadButton)
 export(downloadHandler)
 export(downloadLink)
 export(em)
+export(eventReactive)
 export(exprToFunction)
 export(fileInput)
 export(fixedPage)
 export(fixedPanel)
 export(fixedRow)
+export(flowLayout)
 export(fluidPage)
 export(fluidRow)
+export(getDefaultReactiveDomain)
 export(h1)
 export(h2)
 export(h3)
@@ -66,27 +72,42 @@ export(htmlOutput)
 export(icon)
 export(imageOutput)
 export(img)
+export(incProgress)
 export(includeCSS)
 export(includeHTML)
 export(includeMarkdown)
 export(includeScript)
 export(includeText)
+export(inputPanel)
 export(installExprFunction)
 export(invalidateLater)
 export(is.reactive)
 export(is.reactivevalues)
+export(is.shiny.appobj)
+export(is.singleton)
 export(isolate)
+export(knit_print.html)
+export(knit_print.shiny.appobj)
+export(knit_print.shiny.render.function)
+export(knit_print.shiny.tag)
+export(knit_print.shiny.tag.list)
 export(mainPanel)
 export(makeReactiveBinding)
+export(markRenderFunction)
+export(maskReactiveContext)
 export(navbarMenu)
 export(navbarPage)
 export(navlistPanel)
+export(need)
 export(numericInput)
 export(observe)
+export(observeEvent)
+export(onReactiveDomainEnded)
 export(outputOptions)
 export(p)
 export(pageWithSidebar)
 export(parseQueryString)
+export(passwordInput)
 export(plotOutput)
 export(plotPNG)
 export(pre)
@@ -119,6 +140,10 @@ export(runGitHub)
 export(runUrl)
 export(selectInput)
 export(selectizeInput)
+export(serverInfo)
+export(setProgress)
+export(shinyApp)
+export(shinyAppDir)
 export(shinyServer)
 export(shinyUI)
 export(showReactLog)
@@ -127,6 +152,7 @@ export(sidebarPanel)
 export(singleton)
 export(sliderInput)
 export(span)
+export(splitLayout)
 export(stopApp)
 export(strong)
 export(submitButton)
@@ -151,18 +177,23 @@ export(updateDateRangeInput)
 export(updateNumericInput)
 export(updateRadioButtons)
 export(updateSelectInput)
+export(updateSelectizeInput)
 export(updateSliderInput)
 export(updateTabsetPanel)
 export(updateTextInput)
+export(validate)
 export(validateCssUnit)
 export(verbatimTextOutput)
 export(verticalLayout)
 export(wellPanel)
 export(withMathJax)
+export(withProgress)
+export(withReactiveDomain)
 export(withTags)
-import(RJSONIO)
-import(caTools)
+import(R6)
 import(digest)
+import(htmltools)
 import(httpuv)
-import(methods)
+import(mime)
 import(xtable)
+importFrom(RJSONIO,fromJSON)

NEWS

@@ -1,3 +1,198 @@
+shiny 0.11
+--------------------------------------------------------------------------------
+
+* Changed sliders from jquery-slider to ion.rangeSlider. These sliders have
+  an improved appearance, support updating more properties from the server,
+  and can be controlled with keyboard input.
+
+* Switched from Bootstrap 2 to Bootstrap 3. For most users, this will work
+  seamlessly, but some users may need to use the shinybootstrap2 package for
+  backward compatibility.
+
+* The UI of a Shiny app can now have a body tag. This is useful for CSS
+  templates that use classes on the body tag.
+
+* `actionButton` and `actionLink` now pass their `...` arguments to the
+  underlying tag function. (#607)
+
+* Added `observeEvent` and `eventReactive` functions for clearer, more concise
+  handling of `actionButton`, plot clicks, and other naturally-imperative
+  inputs.
+
+* Errors that happen in reactives no longer prevent any remaining pending
+  observers from executing. It is also now possible for users to control how
+  errors are handled, with the 'shiny.observer.error' global option. (#603,
+  #604)
+
+* Added an `escape` argument to `renderDataTable()` to escape the HTML entities
+  in the data table for security reasons. This might break tables from previous
+  versions of shiny that use raw HTML in the table content, and the old behavior
+  can be brought back by `escape = FALSE` if you are aware of the security
+  implications. (#627)
+
+* Changed the URI encoding/decoding functions internally to use `encodeURI()`,
+  `encodeURIComponent()`, and `decodeURIComponent()` from the httpuv package
+  instead of `utils::URLencode()` and `utils::URLdecode()`. (#630)
+
+* Shiny's web assets are now minified.
+
+* The default reactive domain is now available in event handler functions. (#669)
+
+* Password input fields can now be used, with `passwordInput()`. (#672)
+
+shiny 0.10.2.2
+--------------------------------------------------------------------------------
+
+* Remove use of `rstudio::viewer` in a code example, for R CMD check.
+
+shiny 0.10.2.1
+--------------------------------------------------------------------------------
+
+* Changed some examples to use \donttest instead of \dontrun.
+
+shiny 0.10.2
+--------------------------------------------------------------------------------
+
+* The minimal version of R required for the shiny package is 3.0.0 now.
+
+* Shiny apps can now consist of a single file, app.R, instead of ui.R and
+  server.R.
+
+* Upgraded DataTables from 1.9.4 to 1.10.2. This might be a breaking change if
+  you have customized the DataTables options in your apps. (More info:
+  https://github.com/rstudio/shiny/pull/558)
+
+* File uploading via `fileInput()` works for Internet Explorer 8 and 9 now. Note
+  IE8/9 do not support multiple files from a single file input. If you need to
+  upload multiple files, you have to use one file input for each file.
+
+* Switched away from reference classes to R6.
+
+* Reactive log performance has been greatly improved.
+
+* Added `Progress` and `withProgress`, to display the progress of computation
+  on the client browser.
+
+* Fixed #557: updateSelectizeInput(choices, server = TRUE) did not work when
+  `choices` is a character vector.
+
+* Searching in DataTables is case-insensitive and the search strings are not
+  treated as regular expressions by default now. If you want case-sensitive
+  searching or regular expressions, you can use the configuration options
+  `search$caseInsensitive` and `search$regex`, e.g. `renderDataTable(...,
+  options = list(search = list(caseInsensitve = FALSE, regex = TRUE)))`.
+
+* Added support for `htmltools::htmlDependency`'s new `attachment` parameter to
+  `renderUI`/`uiOutput`.
+
+* Exported `createWebDependency`. It takes an `htmltools::htmlDependency` object
+  and makes it available over Shiny's built-in web server.
+
+* Custom output bindings can now render `htmltools::htmlDependency` objects at
+  runtime using `Shiny.renderDependencies()`.
+
+* Fixes to rounding behavior of sliderInput. (#301, #502)
+
+* Updated selectize.js to version 0.11.2. (#596)
+* Added `position` parameter to `navbarPage`.
+
+shiny 0.10.1
+--------------------------------------------------------------------------------
+
+* Added Unicode support for Windows. Shiny apps running on Windows must use the
+  UTF-8 encoding for ui.R and server.R (also the optional global.R) if they
+  contain non-ASCII characters. See this article for details and examples:
+  http://shiny.rstudio.com/gallery/unicode-characters.html (#516)
+
+* `runGitHub()` also allows the 'username/repo' syntax now, which is equivalent
+  to `runGitHub('repo', 'username')`. (#427)
+
+* `navbarPage()` now accepts a `windowTitle` parameter to set the web browser
+  page title to something other than the title displayed in the navbar.
+
+* Added an `inline` argument to `textOutput()`, `imageOutput()`, `plotOutput()`,
+  and `htmlOutput()`. When `inline = TRUE`, these outputs will be put in
+  `span()` instead of the default `div()`. This occurs automatically when these
+  outputs are created via the inline expressions (e.g. `r renderText(expr)`) in
+  R Markdown documents. See an R Markdown example at
+  http://shiny.rstudio.com/gallery/inline-output.html (#512)
+
+* Added support for option groups in the select/selectize inputs. When the
+  `choices` argument for `selectInput()`/`selectizeInput()` is a list of
+  sub-lists and any sub-list is of length greater than 1, the HTML tag
+  `<optgroup>` will be used. See an example at
+  http://shiny.rstudio.com/gallery/option-groups-for-selectize-input.html (#542)
+
+shiny 0.10.0
+--------------------------------------------------------------------------------
+
+* BREAKING CHANGE: By default, observers now terminate themselves if they were
+  created during a session and that session ends. See ?domains for more details.
+
+* Shiny can now be used in R Markdown v2 documents, to create "Shiny Docs":
+  reports and presentations that combine narrative, statically computed output,
+  and fully dynamic inputs and outputs. For more info, including examples, see
+  http://rmarkdown.rstudio.com/authoring_shiny.html.
+
+* The `session` object that can be passed into a server function (e.g.
+  shinyServer(function(input, output, session) {...})) is now documented: see
+  `?session`.
+
+* Most inputs can now accept `NULL` label values to omit the label altogether.
+
+* New `actionLink` input control; like `actionButton`, but with the appearance
+  of a normal link.
+
+* `renderPlot` now calls `print` on its result if it's visible (i.e. no more
+  explicit `print()` required for ggplot2).
+
+* Introduced Shiny app objects (see `?shinyApp`). These essentially replace the
+  little-advertised ability for `runApp` to take a `list(ui=..., server=...)`
+  as the first argument instead of a directory (though that ability remains for
+  backward compatibility). Unlike those lists, Shiny app objects are tagged with
+  class `shiny.appobj` so they can be run simply by printing them.
+
+* Added `maskReactiveContext` function. It blocks the current reactive context,
+  to evaluate expressions that shouldn't use reactive sources directly. (This
+  should not be commonly needed.)
+
+* Added `flowLayout`, `splitLayout`, and `inputPanel` functions for putting UI
+  elements side by side. `flowLayout` lays out its children in a left-to-right,
+  top-to-bottom arrangement. `splitLayout` evenly divides its horizontal space
+  among its children (or unevenly divides if `cellWidths` argument is provided).
+  `inputPanel` is like `flowPanel`, but with a light grey background, and is
+  intended to be used to encapsulate small input controls wherever vertical
+  space is at a premium.
+
+* Added `serverInfo` to obtain info about the Shiny Server if the app is served
+  through it.
+
+* Added an `inline` argument (TRUE/FALSE) in `checkboxGroupInput()` and
+  `radioButtons()` to allow the horizontal layout (inline = TRUE) of checkboxes
+  or radio buttons. (Thanks, @saurfang, #481)
+
+* `sliderInput` and `selectizeInput`/`selectInput` now use a standard horizontal
+  size instead of filling up all available horizontal space. Pass `width="100%"`
+  explicitly for the old behavior.
+
+* Added the `updateSelectizeInput()` function to make it possible to process
+  searching on the server side (i.e. using R), which can be much faster than the
+  client side processing (i.e. using HTML and JavaScript). See the article at
+  http://shiny.rstudio.com/articles/selectize.html for a detailed introduction.
+
+* Fixed a bug of renderDataTable() when the data object only has 1 row and 1
+  column. (Thanks, ZJ Dai, #429)
+
+* `renderPrint` gained a new argument 'width' to control the width of the text
+  output, e.g. renderPrint({mtcars}, width = 40).
+
+* Fixed #220: the zip file for a directory created by some programs may not have
+  the directory name as its first entry, in which case runUrl() can fail. (#220)
+
+* `runGitHub()` can also take a value of the form "username/repo" in its first
+  argument, e.g. both runGitHub("shiny_example", "rstudio") and
+  runGitHub("rstudio/shiny_example") are valid ways to run the GitHub repo.
+
 shiny 0.9.1
 --------------------------------------------------------------------------------
 

R/app.R

@@ -0,0 +1,379 @@
+# TODO: Subapp global.R
+
+#' Create a Shiny app object
+#'
+#' These functions create Shiny app objects from either an explicit UI/server
+#' pair (\code{shinyApp}), or by passing the path of a directory that contains a
+#' Shiny app (\code{shinyAppDir}). You generally shouldn't need to use these
+#' functions to create/run applications; they are intended for interoperability
+#' purposes, such as embedding Shiny apps inside a \pkg{knitr} document.
+#'
+#' Normally when this function is used at the R console, the Shiny app object is
+#' automatically passed to the \code{print()} function, which runs the app. If
+#' this is called in the middle of a function, the value will not be passed to
+#' \code{print()} and the app will not be run. To make the app run, pass the app
+#' object to \code{print()} or \code{\link{runApp}()}.
+#'
+#' @param ui The UI definition of the app (for example, a call to
+#'   \code{fluidPage()} with nested controls)
+#' @param server A server function
+#' @param onStart A function that will be called before the app is actually run.
+#'   This is only needed for \code{shinyAppObj}, since in the \code{shinyAppDir}
+#'   case, a \code{global.R} file can be used for this purpose.
+#' @param options Named options that should be passed to the `runApp` call. You
+#'   can also specify \code{width} and \code{height} parameters which provide a
+#'   hint to the embedding environment about the ideal height/width for the app.
+#' @param uiPattern A regular expression that will be applied to each \code{GET}
+#'   request to determine whether the \code{ui} should be used to handle the
+#'   request. Note that the entire request path must match the regular
+#'   expression in order for the match to be considered successful.
+#' @return An object that represents the app. Printing the object or passing it
+#'   to \code{\link{runApp}} will run the app.
+#'
+#' @examples
+#' \donttest{
+#' shinyApp(
+#'   ui = fluidPage(
+#'     numericInput("n", "n", 1),
+#'     plotOutput("plot")
+#'   ),
+#'   server = function(input, output) {
+#'     output$plot <- renderPlot( plot(head(cars, input$n)) )
+#'   }
+#' )
+#'
+#' shinyAppDir(system.file("examples/01_hello", package="shiny"))
+#'
+#'
+#' # The object can be passed to runApp()
+#' app <- shinyApp(
+#'   ui = fluidPage(
+#'     numericInput("n", "n", 1),
+#'     plotOutput("plot")
+#'   ),
+#'   server = function(input, output) {
+#'     output$plot <- renderPlot( plot(head(cars, input$n)) )
+#'   }
+#' )
+#'
+#' runApp(app)
+#' }
+#'
+#' @export
+shinyApp <- function(ui=NULL, server=NULL, onStart=NULL, options=list(),
+                     uiPattern="/") {
+  if (is.null(server)) {
+    stop("`server` missing from shinyApp")
+  }
+
+  # Ensure that the entire path is a match
+  uiPattern <- sprintf("^%s$", uiPattern)
+
+  httpHandler <- uiHttpHandler(ui, uiPattern)
+
+  serverFuncSource <- function() {
+    server
+  }
+
+  structure(
+    list(
+      httpHandler = httpHandler,
+      serverFuncSource = serverFuncSource,
+      onStart = onStart,
+      options = options),
+    class = "shiny.appobj"
+  )
+}
+
+#' @rdname shinyApp
+#' @param appDir Path to directory that contains a Shiny app (i.e. a server.R
+#'   file and either ui.R or www/index.html)
+#' @export
+shinyAppDir <- function(appDir, options=list()) {
+  if (!file_test('-d', appDir)) {
+    stop("No Shiny application exists at the path \"", appDir, "\"")
+  }
+
+  # In case it's a relative path, convert to absolute (so we're not adversely
+  # affected by future changes to the path)
+  appDir <- normalizePath(appDir, mustWork = TRUE)
+
+  if (file.exists.ci(appDir, "server.R")) {
+    shinyAppDir_serverR(appDir, options = options)
+  } else if (file.exists.ci(appDir, "app.R")) {
+    shinyAppDir_appR(appDir, options = options)
+  } else {
+    stop("App dir must contain either app.R or server.R.")
+  }
+}
+
+# This reads in an app dir in the case that there's a server.R (and ui.R/www)
+# present, and returns a shiny.appobj.
+shinyAppDir_serverR <- function(appDir, options=list()) {
+  # Most of the complexity here comes from needing to hot-reload if the .R files
+  # change on disk, or are created, or are removed.
+
+  # uiHandlerSource is a function that returns an HTTP handler for serving up
+  # ui.R as a webpage. The "cachedFuncWithFile" call makes sure that the closure
+  # we're creating here only gets executed when ui.R's contents change.
+  uiHandlerSource <- cachedFuncWithFile(appDir, "ui.R", case.sensitive = FALSE,
+    function(uiR) {
+      if (file.exists(uiR)) {
+        # If ui.R contains a call to shinyUI (which sets .globals$ui), use that.
+        # If not, then take the last expression that's returned from ui.R.
+        .globals$ui <- NULL
+        on.exit(.globals$ui <- NULL, add = FALSE)
+        ui <- sourceUTF8(uiR, local = new.env(parent = globalenv()))$value
+        if (!is.null(.globals$ui)) {
+          ui <- .globals$ui[[1]]
+        }
+        return(uiHttpHandler(ui))
+      } else {
+        return(function(req) NULL)
+      }
+    }
+  )
+  uiHandler <- function(req) {
+    uiHandlerSource()(req)
+  }
+
+  wwwDir <- file.path.ci(appDir, "www")
+  fallbackWWWDir <- system.file("www-dir", package = "shiny")
+  serverSource <- cachedFuncWithFile(appDir, "server.R", case.sensitive = FALSE,
+    function(serverR) {
+      # If server.R contains a call to shinyServer (which sets .globals$server),
+      # use that. If not, then take the last expression that's returned from
+      # server.R.
+      .globals$server <- NULL
+      on.exit(.globals$server <- NULL, add = TRUE)
+      result <- sourceUTF8(serverR, local = new.env(parent = globalenv()))$value
+      if (!is.null(.globals$server)) {
+        result <- .globals$server[[1]]
+      }
+      return(result)
+    }
+  )
+
+  # This function stands in for the server function, and reloads the
+  # real server function as necessary whenever server.R changes
+  serverFuncSource <- function() {
+    serverFunction <- serverSource()
+    if (is.null(serverFunction)) {
+      return(function(input, output) NULL)
+    } else if (is.function(serverFunction)) {
+      # This is what we normally expect; run the server function
+      return(serverFunction)
+    } else {
+      stop("server.R returned an object of unexpected type: ",
+        typeof(serverFunction))
+    }
+  }
+
+  oldwd <- NULL
+  onStart <- function() {
+    oldwd <<- getwd()
+    setwd(appDir)
+    if (file.exists(file.path.ci(appDir, "global.R")))
+      sourceUTF8(file.path.ci(appDir, "global.R"))
+  }
+  onEnd <- function() {
+    setwd(oldwd)
+  }
+
+  structure(
+    list(
+      httpHandler = joinHandlers(c(uiHandler, wwwDir, fallbackWWWDir)),
+      serverFuncSource = serverFuncSource,
+      onStart = onStart,
+      onEnd = onEnd,
+      options = options),
+    class = "shiny.appobj"
+  )
+}
+
+# This reads in an app dir in the case that there's a app.R present, and returns
+# a shiny.appobj.
+shinyAppDir_appR <- function(appDir, options=list()) {
+  fullpath <- file.path.ci(appDir, "app.R")
+
+  # This sources app.R and caches the content. When appObj() is called but
+  # app.R hasn't changed, it won't re-source the file. But if called and
+  # app.R has changed, it'll re-source the file and return the result.
+  appObj <- cachedFuncWithFile(appDir, "app.R", case.sensitive = FALSE,
+    function(appR) {
+      result <- sourceUTF8(fullpath, local = new.env(parent = globalenv()))$value
+
+      if (!is.shiny.appobj(result))
+        stop("app.R did not return a shiny.appobj object.")
+
+      return(result)
+    }
+  )
+
+  # A function that invokes the http handler from the appObj in app.R, but
+  # since this uses appObj(), it only re-sources the file when it changes.
+  dynHttpHandler <- function(...) {
+    appObj()$httpHandler(...)
+  }
+
+  dynServerFuncSource <- function(...) {
+    appObj()$serverFuncSource(...)
+  }
+
+  wwwDir <- file.path.ci(appDir, "www")
+  fallbackWWWDir <- system.file("www-dir", package = "shiny")
+
+  oldwd <- NULL
+  onStart <- function() {
+    oldwd <<- getwd()
+    setwd(appDir)
+  }
+  onEnd <- function() {
+    setwd(oldwd)
+  }
+
+  structure(
+    list(
+      httpHandler = joinHandlers(c(dynHttpHandler, wwwDir, fallbackWWWDir)),
+      serverFuncSource = dynServerFuncSource,
+      onStart = onStart,
+      onEnd = onEnd,
+      options = options
+    ),
+    class = "shiny.appobj"
+  )
+}
+
+
+#' @rdname shinyApp
+#' @param x Object to convert to a Shiny app.
+#' @export
+as.shiny.appobj <- function(x) {
+  UseMethod("as.shiny.appobj", x)
+}
+
+#' @rdname shinyApp
+#' @export
+as.shiny.appobj.shiny.appobj <- function(x) {
+  x
+}
+
+#' @rdname shinyApp
+#' @export
+as.shiny.appobj.list <- function(x) {
+  shinyApp(ui = x$ui, server = x$server)
+}
+
+#' @rdname shinyApp
+#' @export
+as.shiny.appobj.character <- function(x) {
+  shinyAppDir(x)
+}
+
+#' @rdname shinyApp
+#' @export
+is.shiny.appobj <- function(x) {
+  inherits(x, "shiny.appobj")
+}
+
+#' @rdname shinyApp
+#' @param ... Additional parameters to be passed to print.
+#' @export
+print.shiny.appobj <- function(x, ...) {
+  opts <- x$options %OR% list()
+  opts <- opts[names(opts) %in%
+      c("port", "launch.browser", "host", "quiet", "display.mode")]
+
+  args <- c(list(x), opts)
+
+  do.call(runApp, args)
+}
+
+#' @rdname shinyApp
+#' @method as.tags shiny.appobj
+#' @export
+as.tags.shiny.appobj <- function(x, ...) {
+  # jcheng 06/06/2014: Unfortunate copy/paste between this function and
+  # knit_print.shiny.appobj, but I am trying to make the most conservative
+  # change possible due to upcoming release.
+  opts <- x$options %OR% list()
+  width <- if (is.null(opts$width)) "100%" else opts$width
+  height <- if (is.null(opts$height)) "400" else opts$height
+
+  path <- addSubApp(x)
+  tags$iframe(src=path, width=width, height=height, class="shiny-frame")
+}
+
+#' Knitr S3 methods
+#'
+#' These S3 methods are necessary to help Shiny applications and UI chunks embed
+#' themselves in knitr/rmarkdown documents.
+#'
+#' @name knitr_methods
+#' @param x Object to knit_print
+#' @param ... Additional knit_print arguments
+NULL
+
+# If there's an R Markdown runtime option set but it isn't set to Shiny, then
+# return a warning indicating the runtime is inappropriate for this object.
+# Returns NULL in all other cases.
+shiny_rmd_warning <- function() {
+  runtime <- knitr::opts_knit$get("rmarkdown.runtime")
+  if (!is.null(runtime) && runtime != "shiny")
+    # note that the RStudio IDE checks for this specific string to detect Shiny
+    # applications in static document
+    list(structure(
+      "Shiny application in a static R Markdown document",
+      class = "rmd_warning"))
+  else
+    NULL
+}
+
+#' @rdname knitr_methods
+#' @export
+knit_print.shiny.appobj <- function(x, ...) {
+  opts <- x$options %OR% list()
+  width <- if (is.null(opts$width)) "100%" else opts$width
+  height <- if (is.null(opts$height)) "400" else opts$height
+
+  runtime <- knitr::opts_knit$get("rmarkdown.runtime")
+  if (!is.null(runtime) && runtime != "shiny") {
+    # If not rendering to a Shiny document, create a box exactly the same
+    # dimensions as the Shiny app would have had (so the document continues to
+    # flow as it would have with the app), and display a diagnostic message
+    width <- validateCssUnit(width)
+    height <- validateCssUnit(height)
+    output <- tags$div(
+      style=paste("width:", width, "; height:", height, "; text-align: center;",
+                  "box-sizing: border-box;", "-moz-box-sizing: border-box;",
+                  "-webkit-box-sizing: border-box;"),
+      class="muted well",
+      "Shiny applications not supported in static R Markdown documents")
+  }
+  else {
+    path <- addSubApp(x)
+    output <- tags$iframe(src=path, width=width, height=height,
+                          class="shiny-frame")
+  }
+
+  # If embedded Shiny apps ever have JS/CSS dependencies (like pym.js) we'll
+  # need to grab those and put them in meta, like in knit_print.shiny.tag. But
+  # for now it's not an issue, so just return the HTML and warning.
+
+  knitr::asis_output(htmlPreserve(format(output, indent=FALSE)),
+                     meta = shiny_rmd_warning(), cacheable = FALSE)
+}
+
+# Let us use a nicer syntax in knitr chunks than literally
+# calling output$value <- renderFoo(...) and fooOutput().
+#' @rdname knitr_methods
+#' @param inline Whether the object is printed inline.
+#' @export
+knit_print.shiny.render.function <- function(x, ..., inline = FALSE) {
+  x <- htmltools::as.tags(x, inline = inline)
+  output <- knitr::knit_print(tagList(x))
+  attr(output, "knit_cacheable") <- FALSE
+  attr(output, "knit_meta") <- append(attr(output, "knit_meta"),
+                                      shiny_rmd_warning())
+  output
+}

R/bootstrap-layout.R

@@ -11,8 +11,8 @@
 #' @param ... Elements to include within the page
 #' @param title The browser window title (defaults to the host URL of the page).
 #'   Can also be set as a side effect of the \code{\link{titlePanel}} function.
-#' @param responsive \code{TRUE} to use responsive layout (automatically adapt
-#'   and resize page elements based on the size of the viewing device)
+#' @param responsive This option is deprecated; it is no longer optional with
+#'   Bootstrap 3.
 #' @param theme Alternative Bootstrap stylesheet (normally a css file within the
 #'   www directory). For example, to use the theme located at
 #'   \code{www/bootstrap.css} you would use \code{theme = "bootstrap.css"}.
@@ -24,9 +24,8 @@
 #'   alternative to low-level row and column functions you can also use
 #'   higher-level layout functions like \code{\link{sidebarLayout}}.
 #'
-#' @note See the
-#'   \href{https://github.com/rstudio/shiny/wiki/Shiny-Application-Layout-Guide}{
-#'    Shiny-Application-Layout-Guide} for additional details on laying out fluid
+#' @note See the \href{http://shiny.rstudio.com/articles/layout-guide.html}{
+#'   Shiny-Application-Layout-Guide} for additional details on laying out fluid
 #'   pages.
 #'
 #' @seealso \code{\link{column}}, \code{\link{sidebarLayout}}
@@ -69,7 +68,7 @@
 #'
 #' @rdname fluidPage
 #' @export
-fluidPage <- function(..., title = NULL, responsive = TRUE, theme = NULL) {
+fluidPage <- function(..., title = NULL, responsive = NULL, theme = NULL) {
   bootstrapPage(div(class = "container-fluid", ...),
                 title = title,
                 responsive = responsive,
@@ -80,7 +79,7 @@ fluidPage <- function(..., title = NULL, responsive = TRUE, theme = NULL) {
 #' @rdname fluidPage
 #' @export
 fluidRow <- function(...) {
-  div(class = "row-fluid", ...)
+  div(class = "row", ...)
 }
 
 #' Create a page with a fixed layout
@@ -95,8 +94,8 @@ fluidRow <- function(...) {
 #'
 #' @param ... Elements to include within the container
 #' @param title The browser window title (defaults to the host URL of the page)
-#' @param responsive \code{TRUE} to use responsive layout (automatically adapt
-#'   and resize page elements based on the size of the viewing device)
+#' @param responsive This option is deprecated; it is no longer optional with
+#'   Bootstrap 3.
 #' @param theme Alternative Bootstrap stylesheet (normally a css file within the
 #'   www directory). For example, to use the theme located at
 #'   \code{www/bootstrap.css} you would use \code{theme = "bootstrap.css"}.
@@ -109,8 +108,7 @@ fluidRow <- function(...) {
 #'   layout functions like \code{sidebarLayout}, rather, all layout must be done
 #'   with \code{fixedRow} and \code{column}.
 #'
-#' @note See the
-#'   \href{https://github.com/rstudio/shiny/wiki/Shiny-Application-Layout-Guide}{
+#' @note See the \href{http://shiny.rstudio.com/articles/layout-guide.html}{
 #'   Shiny Application Layout Guide} for additional details on laying out fixed
 #'   pages.
 #'
@@ -131,7 +129,7 @@ fluidRow <- function(...) {
 #'
 #' @rdname fixedPage
 #' @export
-fixedPage <- function(..., title = NULL, responsive = TRUE, theme = NULL) {
+fixedPage <- function(..., title = NULL, responsive = NULL, theme = NULL) {
   bootstrapPage(div(class = "container", ...),
                 title = title,
                 responsive = responsive,
@@ -186,9 +184,9 @@ column <- function(width, ..., offset = 0) {
   if (!is.numeric(width) || (width < 1) || (width > 12))
     stop("column width must be between 1 and 12")
 
-  colClass <- paste0("span", width)
+  colClass <- paste0("col-sm-", width)
   if (offset > 0)
-    colClass <- paste0(colClass, " offset", offset)
+    colClass <- paste0(colClass, " col-sm-offset-", offset)
   div(class = colClass, ...)
 }
 
@@ -210,7 +208,7 @@ column <- function(width, ..., offset = 0) {
 titlePanel <- function(title, windowTitle=title) {
   tagList(
     tags$head(tags$title(windowTitle)),
-    h2(style = "padding: 10px 0px;", title)
+    h2(title)
   )
 }
 
@@ -276,7 +274,7 @@ sidebarLayout <- function(sidebarPanel,
     fixedRow(firstPanel, secondPanel)
 }
 
-#' Layout UI elements vertically
+#' Lay out UI elements vertically
 #'
 #' Create a container that includes one or more rows of content (each element
 #' passed to the container will appear on it's own line in the UI)
@@ -285,7 +283,7 @@ sidebarLayout <- function(sidebarPanel,
 #' @param fluid \code{TRUE} to use fluid layout; \code{FALSE} to use fixed
 #'   layout.
 #'
-#' @seealso \code{\link{fluidPage}}
+#' @seealso \code{\link{fluidPage}}, \code{\link{flowLayout}}
 #'
 #' @examples
 #' shinyUI(fluidPage(
@@ -306,5 +304,116 @@ verticalLayout <- function(..., fluid = TRUE) {
   })
 }
 
+#' Flow layout
+#'
+#' Lays out elements in a left-to-right, top-to-bottom arrangement. The elements
+#' on a given row will be top-aligned with each other. This layout will not work
+#' well with elements that have a percentage-based width (e.g. `plotOutput` at
+#' its default setting of `width = "100%"`).
+#'
+#' @param ... Unnamed arguments will become child elements of the layout. Named
+#'   arguments will become HTML attributes on the outermost tag.
+#' @param cellArgs Any additional attributes that should be used for each cell
+#'   of the layout.
+#'
+#' @seealso \code{\link{verticalLayout}}
+#'
+#' @examples
+#' flowLayout(
+#'   numericInput("rows", "How many rows?", 5),
+#'   selectInput("letter", "Which letter?", LETTERS),
+#'   sliderInput("value", "What value?", 0, 100, 50)
+#' )
+#' @export
+flowLayout <- function(..., cellArgs = list()) {
 
+  children <- list(...)
+  childIdx <- !nzchar(names(children) %OR% character(length(children)))
+  attribs <- children[!childIdx]
+  children <- children[childIdx]
 
+  do.call(tags$div, c(list(class = "shiny-flow-layout"),
+    attribs,
+    lapply(children, function(x) {
+      do.call(tags$div, c(cellArgs, list(x)))
+    })
+  ))
+}
+
+#' Input panel
+#'
+#' A \code{\link{flowLayout}} with a grey border and light grey background,
+#' suitable for wrapping inputs.
+#'
+#' @param ... Input controls or other HTML elements.
+#'
+#' @export
+inputPanel <- function(...) {
+  div(class = "shiny-input-panel",
+    flowLayout(...)
+  )
+}
+
+#' Split layout
+#'
+#' Lays out elements horizontally, dividing the available horizontal space into
+#' equal parts (by default).
+#'
+#' @param ... Unnamed arguments will become child elements of the layout. Named
+#'   arguments will become HTML attributes on the outermost tag.
+#' @param cellWidths Character or numeric vector indicating the widths of the
+#'   individual cells. Recycling will be used if needed. Character values will
+#'   be interpreted as CSS lengths (see \code{\link{validateCssUnit}}), numeric
+#'   values as pixels.
+#' @param cellArgs Any additional attributes that should be used for each cell
+#'   of the layout.
+#'
+#' @examples
+#' # Equal sizing
+#' splitLayout(
+#'   plotOutput("plot1"),
+#'   plotOutput("plot2")
+#' )
+#'
+#' # Custom widths
+#' splitLayout(cellWidths = c("25%", "75%"),
+#'   plotOutput("plot1"),
+#'   plotOutput("plot2")
+#' )
+#'
+#' # All cells at 300 pixels wide, with cell padding
+#' # and a border around everything
+#' splitLayout(
+#'   style = "border: 1px solid silver;",
+#'   cellWidths = 300,
+#'   cellArgs = list(style = "padding: 6px"),
+#'   plotOutput("plot1"),
+#'   plotOutput("plot2"),
+#'   plotOutput("plot3")
+#' )
+#' @export
+splitLayout <- function(..., cellWidths = NULL, cellArgs = list()) {
+
+  children <- list(...)
+  childIdx <- !nzchar(names(children) %OR% character(length(children)))
+  attribs <- children[!childIdx]
+  children <- children[childIdx]
+  count <- length(children)
+
+  if (length(cellWidths) == 0 || is.na(cellWidths)) {
+    cellWidths <- sprintf("%.3f%%", 100 / count)
+  }
+  cellWidths <- rep(cellWidths, length.out = count)
+  cellWidths <- sapply(cellWidths, validateCssUnit)
+
+  do.call(tags$div, c(list(class = "shiny-split-layout"),
+    attribs,
+    mapply(children, cellWidths, FUN = function(x, w) {
+      do.call(tags$div, c(
+        list(style = sprintf("width: %s;", w)),
+        cellArgs,
+        list(x)
+      ))
+    }, SIMPLIFY = FALSE)
+  ))
+}

R/cache.R

@@ -2,18 +2,15 @@
 # files changes on disk. Each time the cache is dirtied, the set of files is
 # cleared. Therefore, the set of files needs to be re-built each time the cached
 # code executes. This approach allows for dynamic dependency graphs.
-CacheContext <- setRefClass(
+CacheContext <- R6Class(
   'CacheContext',
-  fields = list(
-    .dirty = 'logical',
-    .tests = 'list'
-  ),
-  methods = list(
-    initialize = function() {
-      .dirty <<- TRUE
-      # List of functions that return TRUE if dirty
-      .tests <<- list()
-    },
+  portable = FALSE,
+  class = FALSE,
+  public = list(
+    .dirty = TRUE,
+    # List of functions that return TRUE if dirty
+    .tests = list(),
+
     addDependencyFile = function(file) {
       if (.dirty)
         return()
@@ -23,7 +20,7 @@ CacheContext <- setRefClass(
       mtime <- file.info(file)$mtime
       .tests <<- c(.tests, function() {
         newMtime <- try(file.info(file)$mtime, silent=TRUE)
-        if (is(newMtime, 'try-error'))
+        if (inherits(newMtime, 'try-error'))
           return(TRUE)
         return(!identical(mtime, newMtime))
       })
@@ -53,7 +50,7 @@ CacheContext <- setRefClass(
     },
     with = function(func) {
       oldCC <- .currentCacheContext$cc
-      .currentCacheContext$cc <- .self
+      .currentCacheContext$cc <- self
       on.exit(.currentCacheContext$cc <- oldCC)
 
       return(func())
@@ -77,4 +74,4 @@ dependsOnFile <- function(filepath) {
     .currentCacheContext$cc$forceDirty()
   else
     .currentCacheContext$cc$addDependencyFile(filepath)
-}
+}

R/fileupload.R

@@ -20,18 +20,19 @@
 # form upload, i.e. traditional HTTP POST-based file upload) doesn't work with
 # the websockets package's HTTP server at the moment.
 
-FileUploadOperation <- setRefClass(
+FileUploadOperation <- R6Class(
   'FileUploadOperation',
-  fields = list(
-    .parent = 'ANY',
-    .id = 'character',
-    .files = 'data.frame',
-    .dir = 'character',
-    .currentFileInfo = 'list',
-    .currentFileData = 'ANY',
-    .pendingFileInfos = 'list'
-  ),
-  methods = list(
+  portable = FALSE,
+  class = FALSE,
+  public = list(
+    .parent = NULL,
+    .id = character(0),
+    .files = data.frame(),
+    .dir = character(0),
+    .currentFileInfo = list(),
+    .currentFileData = NULL,
+    .pendingFileInfos = list(),
+
     initialize = function(parent, id, dir, fileInfos) {
       .parent <<- parent
       .id <<- id
@@ -78,24 +79,26 @@ FileUploadOperation <- setRefClass(
 )
 
 #' @include map.R
-FileUploadContext <- setRefClass(
+FileUploadContext <- R6Class(
   'FileUploadContext',
-  fields = list(
-    .basedir = 'character',
-    .operations = 'Map'
-  ),
-  methods = list(
+  portable = FALSE,
+  class = FALSE,
+  public = list(
+    .basedir = character(0),
+    .operations = 'Map',
+
     initialize = function(dir=tempdir()) {
       .basedir <<- dir
+      .operations <<- Map$new()
     },
     createUploadOperation = function(fileInfos) {
       while (TRUE) {
-        id <- paste(as.raw(runif(12, min=0, max=0xFF)), collapse='')
+        id <- paste(as.raw(p_runif(12, min=0, max=0xFF)), collapse='')
         dir <- file.path(.basedir, id)
         if (!dir.create(dir))
           next
 
-        op <- FileUploadOperation$new(.self, id, dir, fileInfos)
+        op <- FileUploadOperation$new(self, id, dir, fileInfos)
         .operations$set(id, op)
         return(id)
       }

R/globals.R

@@ -0,0 +1,9 @@
+# A scope where we can put mutable global state
+.globals <- new.env(parent = emptyenv())
+
+.onLoad <- function(libname, pkgname) {
+  # R's lazy-loading package scheme causes the private seed to be cached in the
+  # package itself, making our PRNG completely deterministic. This line resets
+  # the private seed during load.
+  withPrivateSeed(reinitializeSeed())
+}

R/graph.R

@@ -1,5 +1,5 @@
 writeReactLog <- function(file=stdout()) {
-  cat(RJSONIO::toJSON(.graphEnv$log, pretty=TRUE), file=file)
+  cat(RJSONIO::toJSON(.graphStack$as_list(), pretty=TRUE), file=file)
 }
 
 #' Reactive Log Visualizer
@@ -54,12 +54,12 @@ renderReactLog <- function() {
   return(file)
 }
 
-.graphAppend <- function(logEntry) {
-  if (isTRUE(getOption('shiny.reactlog', FALSE)))
-    .graphEnv$log <- c(.graphEnv$log, list(logEntry))
-  session <- .getShowcaseSessionContext()
-  if (!is.null(session)) {
-    session$.sendCustomMessage("reactlog", logEntry)
+.graphAppend <- function(logEntry, domain = getDefaultReactiveDomain()) {
+  if (isTRUE(getOption('shiny.reactlog')))
+    .graphStack$push(logEntry)
+
+  if (!is.null(domain)) {
+    domain$reactlog(logEntry)
   }
 }
 
@@ -71,12 +71,12 @@ renderReactLog <- function() {
   .graphAppend(list(action='depId', id=id, dependsOn=dependee))
 }
 
-.graphCreateContext <- function(id, label, type, prevId) {
+.graphCreateContext <- function(id, label, type, prevId, domain) {
   .graphAppend(list(
     action='ctx', id=id, label=paste(label, collapse='\n'),
     srcref=attr(label, "srcref"), srcfile=attr(label, "srcfile"),
     type=type, prevId=prevId
-  ))
+  ), domain = domain)
 }
 
 .graphEnterContext <- function(id) {
@@ -95,9 +95,9 @@ renderReactLog <- function() {
   ))
 }
 
-.graphInvalidate <- function(id) {
-  .graphAppend(list(action='invalidate', id=id))
+.graphInvalidate <- function(id, domain) {
+  .graphAppend(list(action='invalidate', id=id), domain)
 }
 
-.graphEnv <- new.env()
-.graphEnv$log <- list()
+#' @include stack.R
+.graphStack <- Stack$new()

R/html-deps.R

@@ -0,0 +1,29 @@
+#' Create a web dependency
+#'
+#' Ensure that a file-based HTML dependency (from the htmltools package) can be
+#' served over Shiny's HTTP server. This function works by using
+#' \code{\link{addResourcePath}} to map the HTML dependency's directory to a
+#' URL.
+#'
+#' @param dependency A single HTML dependency object, created using
+#'   \code{\link{htmlDependency}}. If the \code{src} value is named, then
+#'   \code{href} and/or \code{file} names must be present.
+#'
+#' @return A single HTML dependency object that has an \code{href}-named element
+#'   in its \code{src}.
+#' @export
+createWebDependency <- function(dependency) {
+  if (is.null(dependency))
+    return(NULL)
+
+  if (!inherits(dependency, "html_dependency"))
+    stop("Unexpected non-html_dependency type")
+
+  if (is.null(dependency$src$href)) {
+    prefix <- paste(dependency$name, "-", dependency$version, sep = "")
+    addResourcePath(prefix, dependency$src$file)
+    dependency$src$href <- prefix
+  }
+
+  return(dependency)
+}

R/htmltools.R

@@ -0,0 +1,7 @@
+#' @export a br code div em h1 h2 h3 h4 h5 h6 hr HTML img p pre span strong
+#' @export includeCSS includeHTML includeMarkdown includeScript includeText
+#' @export is.singleton singleton
+#' @export tag tagAppendAttributes tagAppendChild tagAppendChildren tagList tags tagSetChildren withTags
+#' @export validateCssUnit
+#' @export knit_print.html knit_print.shiny.tag knit_print.shiny.tag.list
+NULL

R/imageutils.R

@@ -34,7 +34,7 @@ plotPNG <- function(func, filename=tempfile(fileext='.png'),
   # Finally, if neither quartz nor Cairo, use png().
   if (capabilities("aqua")) {
     pngfun <- png
-  } else if (getOption('shiny.usecairo', TRUE) &&
+  } else if ((getOption('shiny.usecairo') %OR% TRUE) &&
              nchar(system.file(package = "Cairo"))) {
     pngfun <- Cairo::CairoPNG
   } else {
@@ -42,6 +42,15 @@ plotPNG <- function(func, filename=tempfile(fileext='.png'),
   }
 
   pngfun(filename=filename, width=width, height=height, res=res, ...)
+  # Call plot.new() so that even if no plotting operations are performed at
+  # least we have a blank background. N.B. we need to set the margin to 0
+  # temporarily before plot.new() because when the plot size is small (e.g.
+  # 200x50), we will get an error "figure margin too large", which is triggered
+  # by plot.new() with the default (large) margin. However, this does not
+  # guarantee user's code in func() will not trigger the error -- they may have
+  # to set par(mar = smaller_value) before they draw base graphics.
+  op <- par(mar = rep(0, 4))
+  tryCatch(plot.new(), finally = par(op))
   dv <- dev.cur()
   tryCatch(shinyCallingHandlers(func()), finally = dev.off(dv))
 

R/jqueryui.R

@@ -80,7 +80,9 @@ absolutePanel <- function(...,
   if (isTRUE(draggable)) {
     divTag <- tagAppendAttributes(divTag, class='draggable')
     return(tagList(
-      singleton(tags$head(tags$script(src='shared/jqueryui/1.10.3/jquery-ui.min.js'))),
+      # IMPORTANT NOTE: If you update jqueryui, make sure you DON'T include the datepicker,
+      # as it collides with our bootstrap datepicker!
+      singleton(tags$head(tags$script(src='shared/jqueryui/1.10.4/jquery-ui.min.js'))),
       divTag,
       tags$script('$(".draggable").draggable();')
     ))

R/map.R

@@ -9,62 +9,65 @@
 # Remove of unknown key does nothing
 # Setting a key twice always results in last-one-wins
 # /TESTS
-Map <- setRefClass(
+Map <- R6Class(
   'Map',
-  fields = list(
-    .env = 'environment'
-  ),
-  methods = list(
+  portable = FALSE,
+  public = list(
     initialize = function() {
-      .env <<- new.env(parent=emptyenv())
+      private$env <- new.env(parent=emptyenv())
     },
     get = function(key) {
-      if (.self$containsKey(key))
-        return(base::get(key, pos=.env, inherits=FALSE))
-      else
-        return(NULL)
+      env[[key]]
     },
     set = function(key, value) {
-      assign(key, value, pos=.env, inherits=FALSE)
-      return(value)
+      env[[key]] <- value
+      value
     },
     mset = function(...) {
       args <- list(...)
-      for (key in names(args))
-        set(key, args[[key]])
-      return()
+      if (length(args) == 0)
+        return()
+
+      arg_names <- names(args)
+      if (is.null(arg_names) || any(!nzchar(arg_names)))
+        stop("All elements must be named")
+
+      list2env(args, envir = env)
     },
     remove = function(key) {
-      if (.self$containsKey(key)) {
-        result <- .self$get(key)
-        rm(list = key, pos=.env, inherits=FALSE)
-        return(result)
-      }
-      return(NULL)
+      if (!self$containsKey(key))
+        return(NULL)
+
+      result <- env[[key]]
+      rm(list=key, envir=env, inherits=FALSE)
+      result
     },
     containsKey = function(key) {
-      exists(key, where=.env, inherits=FALSE)
+      exists(key, envir=env, inherits=FALSE)
     },
     keys = function() {
-      ls(envir=.env, all.names=TRUE)
+      # Sadly, this is much faster than ls(), because it doesn't sort the keys.
+      names(as.list(env, all.names=TRUE))
     },
     values = function() {
-      mget(.self$keys(), envir=.env, inherits=FALSE)
+      as.list(env, all.names=TRUE)
     },
     clear = function() {
-      .env <<- new.env(parent=emptyenv())
+      private$env <- new.env(parent=emptyenv())
       invisible(NULL)
     },
     size = function() {
-      length(.env)
+      length(env)
     }
+  ),
+
+  private = list(
+    env = 'environment'
   )
 )
 
 as.list.Map <- function(map) {
-  sapply(map$keys(),
-         map$get,
-         simplify=FALSE)
+  map$values()
 }
 length.Map <- function(map) {
   map$size()

R/middleware-shiny.R

@@ -0,0 +1,73 @@
+#' @include globals.R
+NULL
+
+reactLogHandler <- function(req) {
+  if (!identical(req$PATH_INFO, '/reactlog'))
+    return(NULL)
+
+  if (!isTRUE(getOption('shiny.reactlog'))) {
+    return(NULL)
+  }
+
+  return(httpResponse(
+    status=200,
+    content=list(file=renderReactLog(), owned=TRUE)
+  ))
+}
+
+sessionHandler <- function(req) {
+  path <- req$PATH_INFO
+  if (is.null(path))
+    return(NULL)
+
+  matches <- regmatches(path, regexec('^(/session/([0-9a-f]+))(/.*)$', path))
+  if (length(matches[[1]]) == 0)
+    return(NULL)
+
+  session <- matches[[1]][3]
+  subpath <- matches[[1]][4]
+
+  shinysession <- appsByToken$get(session)
+  if (is.null(shinysession))
+    return(NULL)
+
+  subreq <- as.environment(as.list(req, all.names=TRUE))
+  subreq$PATH_INFO <- subpath
+  subreq$SCRIPT_NAME <- paste(subreq$SCRIPT_NAME, matches[[1]][2], sep='')
+
+  withReactiveDomain(shinysession$session, {
+    shinysession$handleRequest(subreq)
+  })
+}
+
+dynamicHandler <- function(filePath, dependencyFiles=filePath) {
+  lastKnownTimestamps <- NA
+  metaHandler <- function(req) NULL
+
+  if (!file.exists(filePath))
+    return(metaHandler)
+
+  cacheContext <- CacheContext$new()
+
+  return (function(req) {
+    # Check if we need to rebuild
+    if (cacheContext$isDirty()) {
+      cacheContext$reset()
+      for (dep in dependencyFiles)
+        cacheContext$addDependencyFile(dep)
+
+      clearClients()
+      if (file.exists(filePath)) {
+        local({
+          cacheContext$with(function() {
+            sys.source(filePath, envir=new.env(parent=globalenv()), keep.source=TRUE)
+          })
+        })
+      }
+      metaHandler <<- joinHandlers(.globals$clients)
+      clearClients()
+    }
+
+    return(metaHandler(req))
+  })
+}

R/middleware.R

@@ -0,0 +1,361 @@
+# This file contains a general toolkit for routing and combining bits of
+# HTTP-handling logic. It is similar in spirit to Rook (and Rack, and WSGI, and
+# Connect, and...) but adds cascading and routing.
+#
+# This file is called "middleware" because that's the term used for these bits
+# of logic in these other frameworks. However, our code uses the word "handler"
+# so we'll stick to that for the rest of this document; just know that they're
+# basically the same concept.
+#
+# ## Intro to handlers
+#
+# A **handler** (or sometimes, **httpHandler**) is a function that takes a
+# `req` parameter--a request object as described in the Rook specification--and
+# returns `NULL`, or an `httpResponse`.
+#
+## ------------------------------------------------------------------------
+httpResponse <- function(status = 200,
+                         content_type = "text/html; charset=UTF-8",
+                         content = "",
+                         headers = list()) {
+  # Make sure it's a list, not a vector
+  headers <- as.list(headers)
+  if (is.null(headers$`X-UA-Compatible`))
+    headers$`X-UA-Compatible` <- "chrome=1"
+  resp <- list(status = status, content_type = content_type, content = content,
+               headers = headers)
+  class(resp) <- 'httpResponse'
+  return(resp)
+}
+
+#
+# You can think of a web application as being simply an aggregation of these
+# functions, each of which performs one kind of duty. Each handler in turn gets
+# a look at the request and can decide whether it knows how to handle it. If
+# so, it returns an `httpResponse` and processing terminates; if not, it
+# returns `NULL` and the next handler gets to execute. If the final handler
+# returns `NULL`, a 404 response should be returned.
+#
+# We have a similar construct for websockets: **websocket handlers** or
+# **wsHandlers**. These take a single `ws` argument which is the websocket
+# connection that was just opened, and they can either return `TRUE` if they
+# are handling the connection, and `NULL` to pass responsibility on to the next
+# wsHandler.
+#
+# ### Combining handlers
+#
+# Since it's so common for httpHandlers to be invoked in this "cascading"
+# fashion, we'll introduce a function that takes zero or more handlers and
+# returns a single handler. And while we're at it, making a directory of static
+# content available is such a common thing to do, we'll allow strings
+# representing paths to be used instead of handlers; any such strings we
+# encounter will be converted into `staticHandler` objects.
+#
+## ------------------------------------------------------------------------
+joinHandlers <- function(handlers) {
+  # Zero handlers; return a null handler
+  if (length(handlers) == 0)
+    return(function(req) NULL)
+
+  # Just one handler (function)? Return it.
+  if (is.function(handlers))
+    return(handlers)
+
+  handlers <- lapply(handlers, function(h) {
+    if (is.character(h))
+      return(staticHandler(h))
+    else
+      return(h)
+  })
+
+  # Filter out NULL
+  handlers <- handlers[!sapply(handlers, is.null)]
+
+  if (length(handlers) == 0)
+    return(function(req) NULL)
+  if (length(handlers) == 1)
+    return(handlers[[1]])
+
+  function(req) {
+    for (handler in handlers) {
+      response <- handler(req)
+      if (!is.null(response))
+        return(response)
+    }
+    return(NULL)
+  }
+}
+
+#
+# Note that we don't have an equivalent of `joinHandlers` for wsHandlers. It's
+# easy to imagine it, we just haven't needed one.
+#
+# ### Handler routing
+#
+# Handlers do not have a built-in notion of routing. Conceptually, given a list
+# of handlers, all the handlers are peers and they all get to see every request
+# (well, up until the point that a handler returns a response).
+#
+# You could implement routing in each handler by checking the request's
+# `PATH_INFO` field, but since it's such a common need, let's make it simple by
+# introducing a `routeHandler` function. This is a handler
+# [decorator](http://en.wikipedia.org/wiki/Decorator_pattern) and it's
+# responsible for 1) filtering out requests that don't match the given route,
+# and 2) temporarily modifying the request object to take the matched part of
+# the route off of the `PATH_INFO` (and add it to the end of `SCRIPT_NAME`).
+# This way, the handler doesn't need to figure out about what part of its URL
+# path has already been matched via routing.
+#
+# (BTW, it's safe for `routeHandler` calls to nest.)
+#
+## ------------------------------------------------------------------------
+routeHandler <- function(prefix, handler) {
+  force(prefix)
+  force(handler)
+
+  if (identical("", prefix))
+    return(handler)
+
+  if (length(prefix) != 1 || !isTRUE(grepl("^/[^\\]+$", prefix))) {
+    stop("Invalid URL prefix \"", prefix, "\"")
+  }
+
+  pathPattern <- paste("^\\Q", prefix, "\\E/", sep = "")
+  function(req) {
+    if (isTRUE(grepl(pathPattern, req$PATH_INFO))) {
+      origScript <- req$SCRIPT_NAME
+      origPath <- req$PATH_INFO
+      on.exit({
+        req$SCRIPT_NAME <- origScript
+        req$PATH_INFO <- origPath
+      }, add = TRUE)
+      pathInfo <- substr(req$PATH_INFO, nchar(prefix)+1, nchar(req$PATH_INFO))
+      req$SCRIPT_NAME <- paste(req$SCRIPT_NAME, prefix, sep = "")
+      req$PATH_INFO <- pathInfo
+      return(handler(req))
+    } else {
+      return(NULL)
+    }
+  }
+}
+
+#
+# We have a version for websocket handlers as well. Pity about the copy/paste
+# job.
+#
+## ------------------------------------------------------------------------
+routeWSHandler <- function(prefix, wshandler) {
+  force(prefix)
+  force(wshandler)
+
+  if (identical("", prefix))
+    return(wshandler)
+
+  if (length(prefix) != 1 || !isTRUE(grepl("^/[^\\]+$", prefix))) {
+    stop("Invalid URL prefix \"", prefix, "\"")
+  }
+
+  pathPattern <- paste("^\\Q", prefix, "\\E/", sep = "")
+  function(ws) {
+    req <- ws$request
+    if (isTRUE(grepl(pathPattern, req$PATH_INFO))) {
+      origScript <- req$SCRIPT_NAME
+      origPath <- req$PATH_INFO
+      on.exit({
+        req$SCRIPT_NAME <- origScript
+        req$PATH_INFO <- origPath
+      }, add = TRUE)
+      pathInfo <- substr(req$PATH_INFO, nchar(prefix)+1, nchar(req$PATH_INFO))
+      req$SCRIPT_NAME <- paste(req$SCRIPT_NAME, prefix, sep = "")
+      req$PATH_INFO <- pathInfo
+      return(wshandler(ws))
+    } else {
+      return(NULL)
+    }
+  }
+}
+
+#
+# ### Handler implementations
+#
+# Now let's actually write some handlers. Note that these functions aren't
+# *themselves* handlers, you call them and they *return* a handler. Handler
+# factory functions, if you will.
+#
+# Here's one that serves up static assets from a directory.
+#
+## ------------------------------------------------------------------------
+staticHandler <- function(root) {
+  force(root)
+  return(function(req) {
+    if (!identical(req$REQUEST_METHOD, 'GET'))
+      return(NULL)
+
+    path <- req$PATH_INFO
+
+    if (is.null(path))
+      return(httpResponse(400, content="<h1>Bad Request</h1>"))
+
+    if (path == '/')
+      path <- '/index.html'
+
+    abs.path <- resolve(root, path)
+    if (is.null(abs.path))
+      return(NULL)
+
+    ext <- tools::file_ext(abs.path)
+    content.type <- getContentType(ext)
+    response.content <- readBin(abs.path, 'raw', n=file.info(abs.path)$size)
+    return(httpResponse(200, content.type, response.content))
+  })
+}
+
+#
+# ## Handler manager
+#
+# The handler manager gives you a place to register handlers (of both http and
+# websocket varieties) and provides an httpuv-compatible set of callbacks for
+# invoking them.
+#
+# Create one of these, make zero or more calls to `addHandler` and
+# `addWSHandler` methods (order matters--first one wins!), and then pass the
+# return value of `createHttpuvApp` to httpuv's `startServer` function.
+#
+## ------------------------------------------------------------------------
+HandlerList <- R6Class("HandlerList",
+  portable = FALSE,
+  class = FALSE,
+  public = list(
+    handlers = list(),
+
+    add = function(handler, key, tail = FALSE) {
+      if (!is.null(handlers[[key]]))
+        stop("Key ", key, " already in use")
+      newList <- structure(names=key, list(handler))
+
+      if (length(handlers) == 0)
+        handlers <<- newList
+      else if (tail)
+        handlers <<- c(handlers, newList)
+      else
+        handlers <<- c(newList, handlers)
+    },
+    remove = function(key) {
+      handlers[key] <<- NULL
+    },
+    clear = function() {
+      handlers <<- list()
+    },
+    invoke = function(...) {
+      for (handler in handlers) {
+        result <- handler(...)
+        if (!is.null(result))
+          return(result)
+      }
+      return(NULL)
+    }
+  )
+)
+
+HandlerManager <- R6Class("HandlerManager",
+  portable = FALSE,
+  class = FALSE,
+  public = list(
+    handlers = "HandlerList",
+    wsHandlers = "HandlerList",
+
+    initialize = function() {
+      handlers <<- HandlerList$new()
+      wsHandlers <<- HandlerList$new()
+    },
+
+    addHandler = function(handler, key, tail = FALSE) {
+      handlers$add(handler, key, tail)
+    },
+    removeHandler = function(key) {
+      handlers$remove(key)
+    },
+    addWSHandler = function(wsHandler, key, tail = FALSE) {
+      wsHandlers$add(wsHandler, key, tail)
+    },
+    removeWSHandler = function(key) {
+      wsHandlers$remove(key)
+    },
+    clear = function() {
+      handlers$clear()
+      wsHandlers$clear()
+    },
+    createHttpuvApp = function() {
+      list(
+        onHeaders = function(req) {
+          maxSize <- getOption('shiny.maxRequestSize') %OR% (5 * 1024 * 1024)
+          if (maxSize <= 0)
+            return(NULL)
+
+          reqSize <- 0
+          if (length(req$CONTENT_LENGTH) > 0)
+            reqSize <- as.numeric(req$CONTENT_LENGTH)
+          else if (length(req$HTTP_TRANSFER_ENCODING) > 0)
+            reqSize <- Inf
+
+          if (reqSize > maxSize) {
+            return(list(status = 413L,
+              headers = list(
+                'Content-Type' = 'text/plain'
+              ),
+              body = 'Maximum upload size exceeded'))
+          }
+          else {
+            return(NULL)
+          }
+        },
+        call = .httpServer(
+          function (req) {
+            return(handlers$invoke(req))
+          },
+          getOption('shiny.sharedSecret')
+        ),
+        onWSOpen = function(ws) {
+          return(wsHandlers$invoke(ws))
+        }
+      )
+    },
+    .httpServer = function(handler, sharedSecret) {
+      filter <- getOption('shiny.http.response.filter')
+      if (is.null(filter))
+        filter <- function(req, response) response
+
+      function(req) {
+        if (!is.null(sharedSecret)
+          && !identical(sharedSecret, req$HTTP_SHINY_SHARED_SECRET)) {
+          return(list(status=403,
+            body='<h1>403 Forbidden</h1><p>Shared secret mismatch</p>',
+            headers=list('Content-Type' = 'text/html')))
+        }
+
+        response <- handler(req)
+        if (is.null(response))
+          response <- httpResponse(404, content="<h1>Not Found</h1>")
+
+        if (inherits(response, "httpResponse")) {
+          headers <- as.list(response$headers)
+          headers$'Content-Type' <- response$content_type
+
+          response <- filter(req, response)
+          return(list(status=response$status,
+            body=response$content,
+            headers=headers))
+        } else {
+          # Assume it's a Rook-compatible response
+          return(response)
+        }
+      }
+    }
+  )
+)
+
+#
+# ## Next steps
+#
+# See server.R and middleware-shiny.R to see actual implementation and usage of
+# handlers in the context of Shiny.

R/priorityqueue.R

@@ -4,15 +4,19 @@
 # elements have the same priority, they are served according to their order in
 # the queue." (http://en.wikipedia.org/wiki/Priority_queue)
 
-PriorityQueue <- setRefClass(
+PriorityQueue <- R6Class(
   'PriorityQueue',
-  fields = list(
+  portable = FALSE,
+  class = FALSE,
+  public = list(
     # Keys are priorities, values are subqueues (implemented as list)
     .itemsByPriority = 'Map',
     # Sorted vector (largest first)
-    .priorities = 'numeric'
-  ),
-  methods = list(
+    .priorities = numeric(0),
+
+    initialize = function() {
+      .itemsByPriority <<- Map$new()
+    },
     # Enqueue an item, with the given priority level (must be integer). Higher
     # priority numbers are dequeued earlier than lower.
     enqueue = function(item, priority) {

R/progress.R

@@ -0,0 +1,283 @@
+#' Reporting progress (object-oriented API)
+#'
+#' Reports progress to the user during long-running operations.
+#'
+#' This package exposes two distinct programming APIs for working with
+#' progress. \code{\link{withProgress}} and \code{\link{setProgress}}
+#' together provide a simple function-based interface, while the
+#' \code{Progress} reference class provides an object-oriented API.
+#'
+#' Instantiating a \code{Progress} object causes a progress panel to be
+#' created, and it will be displayed the first time the \code{set}
+#' method is called. Calling \code{close} will cause the progress panel
+#' to be removed.
+#'
+#' \strong{Methods}
+#'   \describe{
+#'     \item{\code{initialize(session, min = 0, max = 1)}}{
+#'       Creates a new progress panel (but does not display it).
+#'     }
+#'     \item{\code{set(value = NULL, message = NULL, detail = NULL)}}{
+#'       Updates the progress panel. When called the first time, the
+#'       progress panel is displayed.
+#'     }
+#'     \item{\code{inc(amount = 0.1, message = NULL, detail = NULL)}}{
+#'       Like \code{set}, this updates the progress panel. The difference is
+#'       that \code{inc} increases the progress bar by \code{amount}, instead
+#'       of setting it to a specific value.
+#'     }
+#'     \item{\code{close()}}{
+#'       Removes the progress panel. Future calls to \code{set} and
+#'       \code{close} will be ignored.
+#'     }
+#'   }
+#'
+#' @param session The Shiny session object, as provided by
+#'   \code{shinyServer} to the server function.
+#' @param min The value that represents the starting point of the
+#'   progress bar. Must be less tham \code{max}.
+#' @param max The value that represents the end of the progress bar.
+#'   Must be greater than \code{min}.
+#' @param message A single-element character vector; the message to be
+#'   displayed to the user, or \code{NULL} to hide the current message
+#'   (if any).
+#' @param detail A single-element character vector; the detail message
+#'   to be displayed to the user, or \code{NULL} to hide the current
+#'   detail message (if any). The detail message will be shown with a
+#'   de-emphasized appearance relative to \code{message}.
+#' @param value A numeric value at which to set
+#'   the progress bar, relative to \code{min} and \code{max}.
+#'   \code{NULL} hides the progress bar, if it is currently visible.
+#' @param amount Single-element numeric vector; the value at which to set
+#'   the progress bar, relative to \code{min} and \code{max}.
+#'   \code{NULL} hides the progress bar, if it is currently visible.
+#' @param amount For the \code{inc()} method, a numeric value to increment the
+#'   progress bar.
+#'
+#' @examples
+#' \dontrun{
+#' # server.R
+#' shinyServer(function(input, output, session) {
+#'   output$plot <- renderPlot({
+#'     progress <- shiny::Progress$new(session, min=1, max=15)
+#'     on.exit(progress$close())
+#'
+#'     progress$set(message = 'Calculation in progress',
+#'                  detail = 'This may take a while...')
+#'
+#'     for (i in 1:15) {
+#'       progress$set(value = i)
+#'       Sys.sleep(0.5)
+#'     }
+#'     plot(cars)
+#'   })
+#' })
+#' }
+#' @seealso \code{\link{withProgress}}
+#' @format NULL
+#' @usage NULL
+#' @export
+Progress <- R6Class(
+  'Progress',
+  portable = TRUE,
+  public = list(
+
+    initialize = function(session = getDefaultReactiveDomain(), min = 0, max = 1) {
+      # A hacky check to make sure the session object is indeed a session object.
+      if (is.null(session$onFlush)) stop("'session' is not a session object.")
+
+      private$session <- session
+      private$id <- paste(as.character(as.raw(runif(8, min=0, max=255))), collapse='')
+      private$min <- min
+      private$max <- max
+      private$value <- NULL
+      private$closed <- FALSE
+
+      session$sendProgress('open', list(id = private$id))
+    },
+
+    set = function(value = NULL, message = NULL, detail = NULL) {
+      if (private$closed) {
+        warning("Attempting to set progress, but progress already closed.")
+        return()
+      }
+
+      if (is.null(value) || is.na(value)) {
+        value <- NULL
+      } else {
+        # Normalize value to number between 0 and 1
+        value <- min(1, max(0, (value - private$min) / (private$max - private$min)))
+      }
+
+      private$value <- value
+
+      data <- dropNulls(list(
+        id = private$id,
+        message = message,
+        detail = detail,
+        value = value
+      ))
+
+       private$session$sendProgress('update', data)
+    },
+
+    inc = function(amount = 0.1, message = NULL, detail = NULL) {
+      value <- min(self$getValue() + amount, private$max)
+      self$set(value, message, detail)
+    },
+
+    getMin = function() private$min,
+
+    getMax = function() private$max,
+
+    # Return value (not the normalized 0-1 value, but in the original range)
+    getValue = function() {
+      private$value * (private$max - private$min) + private$min
+    },
+
+    close = function() {
+      if (private$closed) {
+        warning("Attempting to close progress, but progress already closed.")
+        return()
+      }
+
+      private$session$sendProgress('close', list(id = private$id))
+      private$closed <- TRUE
+    }
+  ),
+
+  private = list(
+    session = 'environment',
+    id = character(0),
+    min = numeric(0),
+    max = numeric(0),
+    value = NULL,
+    closed = logical(0)
+  )
+)
+
+#' Reporting progress (functional API)
+#'
+#' Reports progress to the user during long-running operations.
+#'
+#' This package exposes two distinct programming APIs for working with progress.
+#' Using \code{withProgress} with \code{incProgress} or \code{setProgress}
+#' provide a simple function-based interface, while the \code{\link{Progress}}
+#' reference class provides an object-oriented API.
+#'
+#' Use \code{withProgress} to wrap the scope of your work; doing so will cause a
+#' new progress panel to be created, and it will be displayed the first time
+#' \code{incProgress} or \code{setProgress} are called. When \code{withProgress}
+#' exits, the corresponding progress panel will be removed.
+#'
+#' The \code{incProgress} function increments the status bar by a specified
+#' amount, whereas the \code{setProgress} function sets it to a specific value,
+#' and can also set the text displayed.
+#'
+#' Generally, \code{withProgress}/\code{incProgress}/\code{setProgress} should
+#' be sufficient; the exception is if the work to be done is asynchronous (this
+#' is not common) or otherwise cannot be encapsulated by a single scope. In that
+#' case, you can use the \code{Progress} reference class.
+#'
+#' @param session The Shiny session object, as provided by \code{shinyServer} to
+#'   the server function. The default is to automatically find the session by
+#'   using the current reactive domain.
+#' @param expr The work to be done. This expression should contain calls to
+#'   \code{setProgress}.
+#' @param min The value that represents the starting point of the progress bar.
+#'   Must be less tham \code{max}. Default is 0.
+#' @param max The value that represents the end of the progress bar. Must be
+#'   greater than \code{min}. Default is 1.
+#' @param amount For \code{incProgress}, the amount to increment the status bar.
+#'   Default is 0.1.
+#' @param env The environment in which \code{expr} should be evaluated.
+#' @param quoted Whether \code{expr} is a quoted expression (this is not
+#'   common).
+#' @param message A single-element character vector; the message to be displayed
+#'   to the user, or \code{NULL} to hide the current message (if any).
+#' @param detail A single-element character vector; the detail message to be
+#'   displayed to the user, or \code{NULL} to hide the current detail message
+#'   (if any). The detail message will be shown with a de-emphasized appearance
+#'   relative to \code{message}.
+#' @param value Single-element numeric vector; the value at which to set the
+#'   progress bar, relative to \code{min} and \code{max}. \code{NULL} hides the
+#'   progress bar, if it is currently visible.
+#'
+#' @examples
+#' \dontrun{
+#' # server.R
+#' shinyServer(function(input, output) {
+#'   output$plot <- renderPlot({
+#'     withProgress(message = 'Calculation in progress',
+#'                  detail = 'This may take a while...', value = 0, {
+#'       for (i in 1:15) {
+#'         incProgress(1/15)
+#'         Sys.sleep(0.25)
+#'       }
+#'     })
+#'     plot(cars)
+#'   })
+#' })
+#' }
+#' @seealso \code{\link{Progress}}
+#' @rdname withProgress
+#' @export
+withProgress <- function(expr, min = 0, max = 1,
+                         value = min + (max - min) * 0.1,
+                         message = NULL, detail = NULL,
+                         session = getDefaultReactiveDomain(),
+                         env = parent.frame(), quoted = FALSE) {
+
+  if (!quoted)
+    expr <- substitute(expr)
+
+  # A hacky check to make sure the session object is indeed a session object.
+  if (is.null(session$onFlush)) stop("'session' is not a session object.")
+
+  p <- Progress$new(session, min = min, max = max)
+
+  session$progressStack$push(p)
+  on.exit({
+    session$progressStack$pop()
+    p$close()
+  })
+
+  p$set(value, message, detail)
+
+  eval(expr, env)
+}
+
+#' @rdname withProgress
+#' @export
+setProgress <- function(value = NULL, message = NULL, detail = NULL,
+                        session = getDefaultReactiveDomain()) {
+
+  # A hacky check to make sure the session object is indeed a session object.
+  if (is.null(session$onFlush)) stop("'session' is not a session object.")
+
+  if (session$progressStack$size() == 0) {
+    warning('setProgress was called outside of withProgress; ignoring')
+    return()
+  }
+
+  session$progressStack$peek()$set(value, message, detail)
+  invisible()
+}
+
+#' @rdname withProgress
+#' @export
+incProgress <- function(amount = 0.1, message = NULL, detail = NULL,
+                        session = getDefaultReactiveDomain()) {
+
+  # A hacky check to make sure the session object is indeed a session object.
+  if (is.null(session$onFlush)) stop("'session' is not a session object.")
+
+  if (session$progressStack$size() == 0) {
+    warning('incProgress was called outside of withProgress; ignoring')
+    return()
+  }
+
+  p <- session$progressStack$peek()
+  p$inc(amount, message, detail)
+  invisible()
+}

R/react.R

@@ -1,27 +1,31 @@
-Context <- setRefClass(
+Context <- R6Class(
   'Context',
-  fields = list(
-    id = 'character',
-    .label = 'character',      # For debug purposes
-    .invalidated = 'logical',
-    .invalidateCallbacks = 'list',
-    .flushCallbacks = 'list'
-  ),
-  methods = list(
-    initialize = function(label='', type='other', prevId='') {
+  portable = FALSE,
+  class = FALSE,
+  public = list(
+    id = character(0),
+    .label = character(0),      # For debug purposes
+    .invalidated = FALSE,
+    .invalidateCallbacks = list(),
+    .flushCallbacks = list(),
+    .domain = NULL,
+
+    initialize = function(domain, label='', type='other', prevId='') {
       id <<- .getReactiveEnvironment()$nextId()
-      .invalidated <<- FALSE
-      .invalidateCallbacks <<- list()
-      .flushCallbacks <<- list()
       .label <<- label
-      .graphCreateContext(id, label, type, prevId)
+      .domain <<- domain
+      .graphCreateContext(id, label, type, prevId, domain)
     },
     run = function(func) {
       "Run the provided function under this context."
-      env <- .getReactiveEnvironment()
-      .graphEnterContext(id)
-      on.exit(.graphExitContext(id))
-      env$runWith(.self, func)
+      withReactiveDomain(.domain, {
+        env <- .getReactiveEnvironment()
+        .graphEnterContext(id)
+        tryCatch(
+          env$runWith(self, func),
+          finally = .graphExitContext(id)
+        )
+      })
     },
     invalidate = function() {
       "Invalidate this context. It will immediately call the callbacks
@@ -30,10 +34,11 @@ Context <- setRefClass(
         return()
       .invalidated <<- TRUE
 
-      .graphInvalidate(id)
+      .graphInvalidate(id, .domain)
       lapply(.invalidateCallbacks, function(func) {
         func()
       })
+      .invalidateCallbacks <<- list()
       NULL
     },
     onInvalidate = function(func) {
@@ -49,7 +54,7 @@ Context <- setRefClass(
     addPendingFlush = function(priority) {
       "Tell the reactive environment that this context should be flushed the
         next time flushReact() called."
-      .getReactiveEnvironment()$addPendingFlush(.self, priority)
+      .getReactiveEnvironment()$addPendingFlush(self, priority)
     },
     onFlush = function(func) {
       "Register a function to be called when this context is flushed."
@@ -58,32 +63,24 @@ Context <- setRefClass(
     executeFlushCallbacks = function() {
       "For internal use only."
       lapply(.flushCallbacks, function(func) {
-        withCallingHandlers({
-          func()
-        }, warning = function(e) {
-          # TODO: Callbacks in app
-        }, error = function(e) {
-          # TODO: Callbacks in app
-        })
+        func()
       })
     }
   )
 )
 
-ReactiveEnvironment <- setRefClass(
+ReactiveEnvironment <- R6Class(
   'ReactiveEnvironment',
-  fields = list(
-    .currentContext = 'ANY',
-    .nextId = 'integer',
+  portable = FALSE,
+  class = FALSE,
+  public = list(
+    .currentContext = NULL,
+    .nextId = 0L,
     .pendingFlush = 'PriorityQueue',
-    .inFlush = 'logical'
-  ),
-  methods = list(
+    .inFlush = FALSE,
+
     initialize = function() {
-      .currentContext <<- NULL
-      .nextId <<- 0L
       .pendingFlush <<- PriorityQueue$new()
-      .inFlush <<- FALSE
     },
     nextId = function() {
       .nextId <<- .nextId + 1L
@@ -91,7 +88,7 @@ ReactiveEnvironment <- setRefClass(
     },
     currentContext = function() {
       if (is.null(.currentContext)) {
-        if (isTRUE(getOption('shiny.suppressMissingContextError', FALSE))) {
+        if (isTRUE(getOption('shiny.suppressMissingContextError'))) {
           return(getDummyContext())
         } else {
           stop('Operation not allowed without an active reactive context. ',
@@ -124,10 +121,14 @@ ReactiveEnvironment <- setRefClass(
   )
 )
 
-.reactiveEnvironment <- ReactiveEnvironment$new()
-.getReactiveEnvironment <- function() {
-  .reactiveEnvironment
-}
+.getReactiveEnvironment <- local({
+  reactiveEnvironment <- NULL
+  function() {
+    if (is.null(reactiveEnvironment))
+      reactiveEnvironment <<- ReactiveEnvironment$new()
+    return(reactiveEnvironment)
+  }
+})
 
 # Causes any pending invalidations to run.
 flushReact <- function() {
@@ -144,8 +145,10 @@ getDummyContext <- function() {}
 local({
   dummyContext <- NULL
   getDummyContext <<- function() {
-    if (is.null(dummyContext))
-      dummyContext <<- Context$new('[none]', type='isolate')
+    if (is.null(dummyContext)) {
+      dummyContext <<- Context$new(getDefaultReactiveDomain(), '[none]',
+        type='isolate')
+    }
     return(dummyContext)
   }
 })

R/reactive-domains.R

@@ -0,0 +1,253 @@
+#' @include globals.R
+NULL
+
+#
+# Over the last few months we've seen a number of cases where it'd be helpful
+# for objects that are instantiated within a Shiny app to know what Shiny
+# session they are "owned" by. I put "owned" in quotes because there isn't a
+# built-in notion of object ownership in Shiny today, any more than there is a
+# notion of one object owning another in R.
+#
+# But it's intuitive to everyone, I think, that the outputs for a session are
+# owned by that session, and any logic that is executed as part of the output
+# is done on behalf of that session. And it seems like in the vast majority of
+# cases, observers that are created inside a shinyServer function (i.e. one per
+# session) are also intuitively owned by the session that's starting up.
+#
+# This notion of ownership is important/helpful for a few scenarios that have
+# come up in recent months:
+#
+# 1. The showcase mode that Jonathan implemented recently highlights
+# observers/reactives as they execute. In order for sessions to only receive
+# highlights for their own code execution, we need to know which sessions own
+# which observers. 2. We've seen a number of apps crash out when observers
+# outlive their sessions and then try to do things with their sessions (the
+# most common error message was something like "Can't write to a closed
+# websocket", but we now silently ignore writes to closed websockets). It'd be
+# convenient for the default behavior of observers to be that they don't
+# outlive their parent sessions. 3. The reactive log visualizer currently
+# visualizes all reactivity in the process; it would be great if by default it
+# only visualized the current session. 4. When an observer has an error, it
+# would be great to be able to send the error to the session so it can do its
+# own handling (such as sending the error info to the client so the user can be
+# notified). 5. Shiny Server Pro wants to show the admin how much time is being
+# spent servicing each session.
+#
+# So what are the rules for establishing ownership?
+#
+# 1. Define the "current domain" as a global variable whose value will own any
+# newly created observer (by default). A domain is a reference class or
+# environment that contains the functions `onEnded(callback)`, `isEnded()`, and
+# `reactlog(logEntry)`.
+#
+## ------------------------------------------------------------------------
+createMockDomain <- function() {
+  callbacks <- list()
+  ended <- FALSE
+  domain <- new.env(parent = emptyenv())
+  domain$onEnded <- function(callback) {
+    callbacks <<- c(callbacks, callback)
+  }
+  domain$isEnded <- function() {
+    ended
+  }
+  domain$reactlog <- function(logEntry) NULL
+  domain$end <- function() {
+    if (!ended) {
+      ended <<- TRUE
+      lapply(callbacks, do.call, list())
+    }
+    invisible()
+  }
+  return(domain)
+}
+
+#
+# 2. The initial value of "current domain" is null.
+#
+## ------------------------------------------------------------------------
+.globals$domain <- NULL
+
+#
+# 3. Objects that can be owned include observers, reactive expressions,
+# invalidateLater instances, reactiveTimer instances. Whenever one of these is
+# created, by default its owner will be the current domain.
+#
+## ------------------------------------------------------------------------
+
+#' @name domains
+#' @rdname domains
+#' @export
+getDefaultReactiveDomain <- function() {
+  .globals$domain
+}
+
+#
+# 4. While a session is being created and the shinyServer function is executed,
+# the current domain is set to the new session. When the shinyServer function
+# is done executing, the previous value of the current domain is restored. This
+# is made foolproof using a `withReactiveDomain` function.
+#
+## ------------------------------------------------------------------------
+
+#' @rdname domains
+#' @export
+withReactiveDomain <- function(domain, expr) {
+  oldValue <- .globals$domain
+  .globals$domain <- domain
+  on.exit(.globals$domain <- oldValue)
+
+  expr
+}
+
+#
+# 5. While an observer or reactive expression is executing, the current domain
+# is set to the owner of the observer. When the observer completes, the
+# previous value of the current domain is restored.
+#
+# 6. Note that once created, an observer/reactive expression belongs to the
+# same domain forever, regardless of how many times it is invalidated and
+# re-executed, and regardless of what caused the invalidation to happen.
+#
+# 7. When a session ends, any observers that it owns are suspended, any
+# invalidateLater/reactiveTimers are stopped.
+#
+## ------------------------------------------------------------------------
+
+#' @rdname domains
+#' @export
+onReactiveDomainEnded <- function(domain, callback, failIfNull = FALSE) {
+  if (is.null(domain)) {
+    if (isTRUE(failIfNull))
+      stop("onReactiveDomainEnded called with null domain and failIfNull=TRUE")
+    else
+      return()
+  }
+  domain$onEnded(callback)
+}
+
+#
+# 8. If an uncaught error occurs while executing an observer, the session gets
+# a chance to handle it. I suppose the default behavior would be to send the
+# message to the client if possible, and then perhaps end the session (or not,
+# I could argue either way).
+#
+# The basic idea here is inspired by Node.js domains, which you can think of as
+# a way to track execution contexts across callback- or listener-oriented
+# asynchronous code. They use it to unify error handling code across a graph of
+# related objects. Our domains will be to unify both lifetime and error
+# handling across a graph of related reactive primitives.
+#
+# (You could imagine that as a client update is being processed, the session
+# associated with that client would become the current domain. IIRC this is how
+# showcase mode is implemented today. I don't think this would cover any cases
+# not covered by rule 5 above, and the absence of rule 5 would leave cases that
+# this rule would not cover.)
+#
+# Pitfalls/open issues:
+#
+# 1. Our current approach has the issue of observers staying alive longer than
+# they ought to. This proposal introduces the opposite risk: that
+# observers/invalidateLater/reactiveTimer instances, having implicitly been
+# assigned a parent, are suspended/disposed earlier than they ought to have
+# been. I find this especially worrisome for invalidateLater/reactiveTimer,
+# which will often be called in a reactive expression, and thus execute under
+# unpredictable circumstances. Perhaps those should continue to accept an
+# explicit "session=" parameter that the user is warned about if they don't
+# provide a value.
+#
+# 2. Are there situations where it is ambiguous what the right thing to do is,
+# and we should warn/error to ask the user to provide a domain explicitly?
+#
+## ------------------------------------------------------------------------
+
+#' Reactive domains
+#'
+#' Reactive domains are a mechanism for establishing ownership over reactive
+#' primitives (like reactive expressions and observers), even if the set of
+#' reactive primitives is dynamically created. This is useful for lifetime
+#' management (i.e. destroying observers when the Shiny session that created
+#' them ends) and error handling.
+#'
+#' At any given time, there can be either a single "default" reactive domain
+#' object, or none (i.e. the reactive domain object is \code{NULL}). You can
+#' access the current default reactive domain by calling
+#' \code{getDefaultReactiveDomain}.
+#'
+#' Unless you specify otherwise, newly created observers and reactive
+#' expressions will be assigned to the current default domain (if any). You can
+#' override this assignment by providing an explicit \code{domain} argument to
+#' \code{\link{reactive}} or \code{\link{observe}}.
+#'
+#' For advanced usage, it's possible to override the default domain using
+#' \code{withReactiveDomain}. The \code{domain} argument will be made the
+#' default domain while \code{expr} is evaluated.
+#'
+#' Implementers of new reactive primitives can use \code{onReactiveDomainEnded}
+#' as a convenience function for registering callbacks. If the reactive domain
+#' is \code{NULL} and \code{failIfNull} is \code{FALSE}, then the callback will
+#' never be invoked.
+#'
+#' @name domains
+#' @param domain A valid domain object (for example, a Shiny session), or
+#'   \code{NULL}
+#' @param expr An expression to evaluate under \code{domain}
+#' @param callback A callback function to be invoked
+#' @param failIfNull If \code{TRUE} then an error is given if the \code{domain}
+#'   is \code{NULL}
+NULL
+
+#
+# Example 1
+# ---
+# ```
+# obs1 <- observe({
+# })
+# shinyServer(function(input, output) {
+#   obs2 <- observe({
+#     obs3 <- observe({
+#     })
+#   })
+# })
+# # obs1 would have no domain, obs2 and obs3 would be owned by the session
+# ```
+#
+# Example 2
+# ---
+# ```
+# globalValues <- reactiveValues(broadcast="")
+# shinyServer(function(input, output) {
+#   sessionValues <- reactiveValues()
+#   output$messageOutput <- renderText({
+#     globalValues$broadcast
+#     obs1 <- observe({...})
+#   })
+#   observe({
+#     if (input$goButton == 0) return()
+#     isolate( globalValues$broadcast <- input$messageInput )
+#   })
+# })
+# # The observer behind messageOutput would be owned by the session,
+# # as would all the many instances of obs1 that were created.
+# ```
+# ---
+#
+# Example 3
+# ---
+# ```
+# rexpr1 <- reactive({
+#   invalidateLater(1000)
+#   obs1 <- observe({...})
+# })
+# observeSomething <- function() {
+#   obs2 <- observe({...})
+# })
+# shinyServer(function(input, output) {
+#   obs3 <- observe({
+#     observeSomething()
+#     rexpr1()
+#   })
+# })
+# # rexpr1, the invalidateLater call, and obs1 would all have no owner;
+# # obs2 and obs3 would be owned by the session.
+# ```

R/reactives.R

@@ -1,9 +1,16 @@
-Dependents <- setRefClass(
+#' @include utils.R
+NULL
+
+Dependents <- R6Class(
   'Dependents',
-  fields = list(
-    .dependents = 'Map'
-  ),
-  methods = list(
+  portable = FALSE,
+  class = FALSE,
+  public = list(
+    .dependents = 'Map',
+
+    initialize = function() {
+      .dependents <<- Map$new()
+    },
     register = function(depId=NULL, depLabel=NULL) {
       ctx <- .getReactiveEnvironment()$currentContext()
       if (!.dependents$containsKey(ctx$id)) {
@@ -33,11 +40,12 @@ Dependents <- setRefClass(
 
 # ReactiveValues ------------------------------------------------------------
 
-ReactiveValues <- setRefClass(
+ReactiveValues <- R6Class(
   'ReactiveValues',
-  fields = list(
+  portable = FALSE,
+  public = list(
     # For debug purposes
-    .label = 'character',
+    .label = character(0),
     .values = 'environment',
     .dependents = 'environment',
     # Dependents for the list of all names, including hidden
@@ -45,14 +53,17 @@ ReactiveValues <- setRefClass(
     # Dependents for all values, including hidden
     .allValuesDeps = 'Dependents',
     # Dependents for all values
-    .valuesDeps = 'Dependents'
-  ),
-  methods = list(
+    .valuesDeps = 'Dependents',
+
     initialize = function() {
-      .label <<- paste('reactiveValues', runif(1, min=1000, max=9999),
+      .label <<- paste('reactiveValues',
+                       p_randomInt(1000, 10000),
                        sep="")
       .values <<- new.env(parent=emptyenv())
       .dependents <<- new.env(parent=emptyenv())
+      .namesDeps <<- Dependents$new()
+      .allValuesDeps <<- Dependents$new()
+      .valuesDeps <<- Dependents$new()
     },
     get = function(key) {
       ctx <- .getReactiveEnvironment()$currentContext()
@@ -110,7 +121,7 @@ ReactiveValues <- setRefClass(
     mset = function(lst) {
       lapply(base::names(lst),
              function(name) {
-               .self$set(name, lst[[name]])
+               self$set(name, lst[[name]])
              })
     },
     names = function() {
@@ -141,11 +152,12 @@ ReactiveValues <- setRefClass(
 
 #' Create an object for storing reactive values
 #'
-#' This function returns an object for storing reactive values. It is similar
-#' to a list, but with special capabilities for reactive programming. When you
-#' read a value from it, the calling reactive expression takes a reactive
-#' dependency on that value, and when you write to it, it notifies any reactive
-#' functions that depend on that value.
+#' This function returns an object for storing reactive values. It is similar to
+#' a list, but with special capabilities for reactive programming. When you read
+#' a value from it, the calling reactive expression takes a reactive dependency
+#' on that value, and when you write to it, it notifies any reactive functions
+#' that depend on that value. Note that values taken from the reactiveValues
+#' object are reactive, but the reactiveValues object itself is not.
 #'
 #' @examples
 #' # Create the object with no values
@@ -188,9 +200,6 @@ reactiveValues <- function(...) {
   values
 }
 
-# Register the S3 class so that it can be used for a field in a Reference Class
-setOldClass("reactivevalues")
-
 # Create a reactivevalues object
 #
 # @param values A ReactiveValues object
@@ -208,15 +217,15 @@ setOldClass("reactivevalues")
 #' @export
 is.reactivevalues <- function(x) inherits(x, 'reactivevalues')
 
-#' @S3method $ reactivevalues
+#' @export
 `$.reactivevalues` <- function(x, name) {
   .subset2(x, 'impl')$get(name)
 }
 
-#' @S3method [[ reactivevalues
+#' @export
 `[[.reactivevalues` <- `$.reactivevalues`
 
-#' @S3method $<- reactivevalues
+#' @export
 `$<-.reactivevalues` <- function(x, name, value) {
   if (attr(x, 'readonly')) {
     stop("Attempted to assign value to a read-only reactivevalues object")
@@ -228,30 +237,30 @@ is.reactivevalues <- function(x) inherits(x, 'reactivevalues')
   }
 }
 
-#' @S3method [[<- reactivevalues
+#' @export
 `[[<-.reactivevalues` <- `$<-.reactivevalues`
 
-#' @S3method [ reactivevalues
+#' @export
 `[.reactivevalues` <- function(values, name) {
   stop("Single-bracket indexing of reactivevalues object is not allowed.")
 }
 
-#' @S3method [<- reactivevalues
+#' @export
 `[<-.reactivevalues` <- function(values, name, value) {
   stop("Single-bracket indexing of reactivevalues object is not allowed.")
 }
 
-#' @S3method names reactivevalues
+#' @export
 names.reactivevalues <- function(x) {
   .subset2(x, 'impl')$names()
 }
 
-#' @S3method names<- reactivevalues
+#' @export
 `names<-.reactivevalues` <- function(x, value) {
   stop("Can't assign names to reactivevalues object")
 }
 
-#' @S3method as.list reactivevalues
+#' @export
 as.list.reactivevalues <- function(x, all.names=FALSE, ...) {
   shinyDeprecated("reactiveValuesToList",
     msg = paste("'as.list.reactivevalues' is deprecated. ",
@@ -293,31 +302,46 @@ reactiveValuesToList <- function(x, all.names=FALSE) {
   .subset2(x, 'impl')$toList(all.names)
 }
 
+# This function is needed because str() on a reactivevalues object will call
+# [[.reactivevalues(), which will give an error when it tries to access
+# x[['impl']].
+#' @export
+str.reactivevalues <- function(object, indent.str = " ", ...) {
+  str(unclass(object), indent.str = indent.str, ...)
+  # Need to manually print out the class field,
+  cat(indent.str, '- attr(*, "class")=', sep = "")
+  str(class(object))
+}
+
 # Observable ----------------------------------------------------------------
 
-Observable <- setRefClass(
+Observable <- R6Class(
   'Observable',
-  fields = list(
+  portable = FALSE,
+  public = list(
     .func = 'function',
-    .label = 'character',
+    .label = character(0),
+    .domain = NULL,
     .dependents = 'Dependents',
-    .invalidated = 'logical',
-    .running = 'logical',
-    .value = 'ANY',
-    .visible = 'logical',
-    .execCount = 'integer',
-    .mostRecentCtxId = 'character'
-  ),
-  methods = list(
-    initialize = function(func, label=deparse(substitute(func))) {
+    .invalidated = logical(0),
+    .running = logical(0),
+    .value = NULL,
+    .visible = logical(0),
+    .execCount = integer(0),
+    .mostRecentCtxId = character(0),
+
+    initialize = function(func, label = deparse(substitute(func)),
+                          domain = getDefaultReactiveDomain()) {
       if (length(formals(func)) > 0)
         stop("Can't make a reactive expression from a function that takes one ",
              "or more parameters; only functions without parameters can be ",
              "reactive.")
       .func <<- func
+      .label <<- label
+      .domain <<- domain
+      .dependents <<- Dependents$new()
       .invalidated <<- TRUE
       .running <<- FALSE
-      .label <<- label
       .execCount <<- 0L
       .mostRecentCtxId <<- ""
     },
@@ -325,7 +349,7 @@ Observable <- setRefClass(
       .dependents$register()
 
       if (.invalidated || .running) {
-        .self$.updateValue()
+        self$.updateValue()
       }
 
       .graphDependsOnId(getCurrentContext()$id, .mostRecentCtxId)
@@ -339,7 +363,8 @@ Observable <- setRefClass(
         invisible(.value)
     },
     .updateValue = function() {
-      ctx <- Context$new(.label, type='observable', prevId=.mostRecentCtxId)
+      ctx <- Context$new(.domain, .label, type = 'observable',
+                         prevId = .mostRecentCtxId)
       .mostRecentCtxId <<- ctx$id
       ctx$onInvalidate(function() {
         .invalidated <<- TRUE
@@ -354,7 +379,7 @@ Observable <- setRefClass(
       on.exit(.running <<- wasRunning)
 
       ctx$run(function() {
-        result <- withVisible(try(shinyCallingHandlers(.func()), silent=FALSE))
+        result <- withVisible(try(shinyCallingHandlers(.func()), silent=TRUE))
         .visible <<- result$visible
         .value <<- result$value
       })
@@ -387,6 +412,7 @@ Observable <- setRefClass(
 #'   This is useful when you want to use an expression that is stored in a
 #'   variable; to do so, it must be quoted with `quote()`.
 #' @param label A label for the reactive expression, useful for debugging.
+#' @param domain See \link{domains}.
 #' @return a function, wrapped in a S3 class "reactive"
 #'
 #' @examples
@@ -409,7 +435,8 @@ Observable <- setRefClass(
 #' isolate(reactiveD())
 #'
 #' @export
-reactive <- function(x, env = parent.frame(), quoted = FALSE, label = NULL) {
+reactive <- function(x, env = parent.frame(), quoted = FALSE, label = NULL,
+                     domain = getDefaultReactiveDomain()) {
   fun <- exprToFunction(x, env, quoted)
   # Attach a label and a reference to the original user source for debugging
   if (is.null(label))
@@ -417,12 +444,12 @@ reactive <- function(x, env = parent.frame(), quoted = FALSE, label = NULL) {
   srcref <- attr(substitute(x), "srcref")
   if (length(srcref) >= 2) attr(label, "srcref") <- srcref[[2]]
   attr(label, "srcfile") <- srcFileOfRef(srcref[[1]])
-  o <- Observable$new(fun, label)
+  o <- Observable$new(fun, label, domain)
   registerDebugHook(".func", o, "Reactive")
-  structure(o$getValue@.Data, observable = o, class = "reactive")
+  structure(o$getValue, observable = o, class = "reactive")
 }
 
-#' @S3method print reactive
+#' @export
 print.reactive <- function(x, ...) {
   label <- attr(x, "observable")$.label
   cat(label, "\n")
@@ -434,9 +461,9 @@ is.reactive <- function(x) inherits(x, "reactive")
 
 # Return the number of times that a reactive expression or observer has been run
 execCount <- function(x) {
-  if (is.function(x))
-    return(environment(x)$.execCount)
-  else if (is(x, 'Observer'))
+  if (is.reactive(x))
+    return(attr(x, "observable")$.execCount)
+  else if (inherits(x, 'Observer'))
     return(x$.execCount)
   else
     stop('Unexpected argument to execCount')
@@ -444,37 +471,55 @@ execCount <- function(x) {
 
 # Observer ------------------------------------------------------------------
 
-Observer <- setRefClass(
+Observer <- R6Class(
   'Observer',
-  fields = list(
+  portable = FALSE,
+  public = list(
     .func = 'function',
-    .label = 'character',
-    .priority = 'numeric',
-    .invalidateCallbacks = 'list',
-    .execCount = 'integer',
+    .label = character(0),
+    .domain = 'ANY',
+    .priority = numeric(0),
+    .autoDestroy = logical(0),
+    .invalidateCallbacks = list(),
+    .execCount = integer(0),
     .onResume = 'function',
-    .suspended = 'logical',
-    .prevId = 'character'
-  ),
-  methods = list(
-    initialize = function(func, label, suspended = FALSE, priority = 0) {
+    .suspended = logical(0),
+    .destroyed = logical(0),
+    .prevId = character(0),
+
+    initialize = function(func, label, suspended = FALSE, priority = 0,
+                          domain = getDefaultReactiveDomain(),
+                          autoDestroy = TRUE) {
       if (length(formals(func)) > 0)
         stop("Can't make an observer from a function that takes parameters; ",
              "only functions without parameters can be reactive.")
 
-      .func <<- func
+      .func <<- function() {
+        tryCatch(
+          func(),
+          validation = function(e) {
+            # It's OK for a validation error to cause an observer to stop
+            # running
+          }
+        )
+      }
       .label <<- label
+      .domain <<- domain
+      .autoDestroy <<- autoDestroy
       .priority <<- normalizePriority(priority)
       .execCount <<- 0L
       .suspended <<- suspended
       .onResume <<- function() NULL
+      .destroyed <<- FALSE
       .prevId <<- ''
 
+      onReactiveDomainEnded(.domain, self$.onDomainEnded)
+
       # Defer the first running of this until flushReact is called
       .createContext()$invalidate()
     },
     .createContext = function() {
-      ctx <- Context$new(.label, type='observer', prevId=.prevId)
+      ctx <- Context$new(.domain, .label, type='observer', prevId=.prevId)
       .prevId <<- ctx$id
 
       ctx$onInvalidate(function() {
@@ -494,7 +539,27 @@ Observer <- setRefClass(
       })
 
       ctx$onFlush(function() {
-        run()
+        tryCatch({
+          if (!.destroyed)
+            run()
+
+        }, error = function(e) {
+          # A function to handle errors that occur during a flush
+          flushErrorHandler <- getOption('shiny.observer.error')
+
+          # Default handler function, if not available from global option
+          if (is.null(flushErrorHandler)) {
+            flushErrorHandler <- function(e, label, domain) {
+              warning("Unhandled error in observer: ",
+                e$message, "\n", label, immediate. = TRUE, call. = FALSE)
+              if (!is.null(domain)) {
+                domain$unhandledError(e)
+              }
+            }
+          }
+
+          flushErrorHandler(e, .label, .domain)
+        })
       })
 
       return(ctx)
@@ -517,6 +582,17 @@ Observer <- setRefClass(
       which case the priority change will be effective upon resume."
       .priority <<- normalizePriority(priority)
     },
+    setAutoDestroy = function(autoDestroy) {
+      "Sets whether this observer should be automatically destroyed when its
+      domain (if any) ends. If autoDestroy is TRUE and the domain already
+      ended, then destroy() is called immediately."
+      oldValue <- .autoDestroy
+      .autoDestroy <<- autoDestroy
+      if (!is.null(.domain) && .domain$isEnded()) {
+        destroy()
+      }
+      invisible(oldValue)
+    },
     suspend = function() {
       "Causes this observer to stop scheduling flushes (re-executions) in
       response to invalidations. If the observer was invalidated prior to this
@@ -535,6 +611,18 @@ Observer <- setRefClass(
         .onResume <<- function() NULL
       }
       invisible()
+    },
+    destroy = function() {
+      "Prevents this observer from ever executing again (even if a flush has
+      already been scheduled)."
+
+      suspend()
+      .destroyed <<- TRUE
+    },
+    .onDomainEnded = function() {
+      if (isTRUE(.autoDestroy)) {
+        destroy()
+      }
     }
   )
 )
@@ -543,23 +631,28 @@ Observer <- setRefClass(
 #'
 #' Creates an observer from the given expression.
 #'
-#' An observer is like a reactive
-#' expression in that it can read reactive values and call reactive expressions, and
-#' will automatically re-execute when those dependencies change. But unlike
-#' reactive expressions, it doesn't yield a result and can't be used as an input
-#' to other reactive expressions. Thus, observers are only useful for their side
-#' effects (for example, performing I/O).
+#' An observer is like a reactive expression in that it can read reactive values
+#' and call reactive expressions, and will automatically re-execute when those
+#' dependencies change. But unlike reactive expressions, it doesn't yield a
+#' result and can't be used as an input to other reactive expressions. Thus,
+#' observers are only useful for their side effects (for example, performing
+#' I/O).
 #'
-#' Another contrast between reactive expressions and observers is their execution
-#' strategy. Reactive expressions use lazy evaluation; that is, when their
-#' dependencies change, they don't re-execute right away but rather wait until
-#' they are called by someone else. Indeed, if they are not called then they
-#' will never re-execute. In contrast, observers use eager evaluation; as soon
-#' as their dependencies change, they schedule themselves to re-execute.
+#' Another contrast between reactive expressions and observers is their
+#' execution strategy. Reactive expressions use lazy evaluation; that is, when
+#' their dependencies change, they don't re-execute right away but rather wait
+#' until they are called by someone else. Indeed, if they are not called then
+#' they will never re-execute. In contrast, observers use eager evaluation; as
+#' soon as their dependencies change, they schedule themselves to re-execute.
 #'
-#' @param x An expression (quoted or unquoted). Any return value will be ignored.
-#' @param env The parent environment for the reactive expression. By default, this
-#'   is the calling environment, the same as when defining an ordinary
+#' Starting with Shiny 0.10.0, observers are automatically destroyed by default
+#' when the \link[=domains]{domain} that owns them ends (e.g. when a Shiny session
+#' ends).
+#'
+#' @param x An expression (quoted or unquoted). Any return value will be
+#'   ignored.
+#' @param env The parent environment for the reactive expression. By default,
+#'   this is the calling environment, the same as when defining an ordinary
 #'   non-reactive expression.
 #' @param quoted Is the expression quoted? By default, this is \code{FALSE}.
 #'   This is useful when you want to use an expression that is stored in a
@@ -571,6 +664,9 @@ Observer <- setRefClass(
 #'   this observer should be executed. An observer with a given priority level
 #'   will always execute sooner than all observers with a lower priority level.
 #'   Positive, negative, and zero values are allowed.
+#' @param domain See \link{domains}.
+#' @param autoDestroy If \code{TRUE} (the default), the observer will be
+#'   automatically destroyed when its domain (if any) ends.
 #' @return An observer reference class object. This object has the following
 #'   methods:
 #'   \describe{
@@ -585,12 +681,21 @@ Observer <- setRefClass(
 #'       invalidations. If the observer was invalidated while suspended, then it
 #'       will schedule itself for re-execution.
 #'     }
+#'     \item{\code{destroy()}}{
+#'       Stops the observer from executing ever again, even if it is currently
+#'       scheduled for re-execution.
+#'     }
 #'     \item{\code{setPriority(priority = 0)}}{
 #'       Change this observer's priority. Note that if the observer is currently
 #'       invalidated, then the change in priority will not take effect until the
 #'       next invalidation--unless the observer is also currently suspended, in
 #'       which case the priority change will be effective upon resume.
 #'     }
+#'     \item{\code{setAutoDestroy(autoDestroy)}}{
+#'       Sets whether this observer should be automatically destroyed when its
+#'       domain (if any) ends. If autoDestroy is TRUE and the domain already
+#'       ended, then destroy() is called immediately."
+#'     }
 #'     \item{\code{onInvalidate(callback)}}{
 #'       Register a callback function to run when this observer is invalidated.
 #'       No arguments will be provided to the callback function when it is
@@ -618,13 +723,15 @@ Observer <- setRefClass(
 #'
 #' @export
 observe <- function(x, env=parent.frame(), quoted=FALSE, label=NULL,
-                    suspended=FALSE, priority=0) {
+                    suspended=FALSE, priority=0,
+                    domain=getDefaultReactiveDomain(), autoDestroy = TRUE) {
 
   fun <- exprToFunction(x, env, quoted)
   if (is.null(label))
     label <- sprintf('observe(%s)', paste(deparse(body(fun)), collapse='\n'))
 
-  o <- Observer$new(fun, label=label, suspended=suspended, priority=priority)
+  o <- Observer$new(fun, label=label, suspended=suspended, priority=priority,
+                    domain=domain, autoDestroy=autoDestroy)
   registerDebugHook(".func", o, "Observer")
   invisible(o)
 }
@@ -1085,9 +1192,202 @@ reactiveFileReader <- function(intervalMillis, session, filePath, readFunc, ...)
 #'
 #' @export
 isolate <- function(expr) {
-  ctx <- Context$new('[isolate]', type='isolate')
+  ctx <- Context$new(getDefaultReactiveDomain(), '[isolate]', type='isolate')
   on.exit(ctx$invalidate())
   ctx$run(function() {
     expr
   })
 }
+
+#' Evaluate an expression without a reactive context
+#'
+#' Temporarily blocks the current reactive context and evaluates the given
+#' expression. Any attempt to directly access reactive values or expressions in
+#' \code{expr} will give the same results as doing it at the top-level (by
+#' default, an error).
+#'
+#' @param expr An expression to evaluate.
+#' @return The value of \code{expr}.
+#'
+#' @seealso \code{\link{isolate}}
+#'
+#' @export
+maskReactiveContext <- function(expr) {
+  .getReactiveEnvironment()$runWith(NULL, function() {
+    expr
+  })
+}
+
+#' Event handler
+#'
+#' Respond to "event-like" reactive inputs, values, and expressions.
+#'
+#' Shiny's reactive programming framework is primarily designed for calculated
+#' values (reactive expressions) and side-effect-causing actions (observers)
+#' that respond to \emph{any} of their inputs changing. That's often what is
+#' desired in Shiny apps, but not always: sometimes you want to wait for a
+#' specific action to be taken from the user, like clicking an
+#' \code{\link{actionButton}}, before calculating an expression or taking an
+#' action. A reactive value or expression that is used to trigger other
+#' calculations in this way is called an \emph{event}.
+#'
+#' These situations demand a more imperative, "event handling" style of
+#' programming that is possible--but not particularly intuitive--using the
+#' reactive programming primitives \code{\link{observe}} and
+#' \code{\link{isolate}}. \code{observeEvent} and \code{eventReactive} provide
+#' straightforward APIs for event handling that wrap \code{observe} and
+#' \code{isolate}.
+#'
+#' Use \code{observeEvent} whenever you want to \emph{perform an action} in
+#' response to an event. (Note that "recalculate a value" does not generally
+#' count as performing an action--see \code{eventReactive} for that.) The first
+#' argument is the event you want to respond to, and the second argument is a
+#' function that should be called whenever the event occurs.
+#'
+#' Use \code{eventReactive} to create a \emph{calculated value} that only
+#' updates in response to an event. This is just like a normal
+#' \link[=reactive]{reactive expression} except it ignores all the usual
+#' invalidations that come from its reactive dependencies; it only invalidates
+#' in response to the given event.
+#'
+#' Both \code{observeEvent} and \code{eventReactive} take an \code{ignoreNULL}
+#' parameter that affects behavior when the \code{eventExpr} evaluates to
+#' \code{NULL} (or in the special case of an \code{\link{actionButton}},
+#' \code{0}). In these cases, if \code{ignoreNULL} is \code{TRUE}, then an
+#' \code{observeEvent} will not execute and an \code{eventReactive} will raise a
+#' silent \link[=validate]{validation} error. This is useful behavior if you
+#' don't want to do the action or calculation when your app first starts, but
+#' wait for the user to initiate the action first (like a "Submit" button);
+#' whereas \code{ignoreNULL=FALSE} is desirable if you want to initially perform
+#' the action/calculation and just let the user re-initiate it (like a
+#' "Recalculate" button).
+#'
+#' @param eventExpr A (quoted or unquoted) expression that represents the event;
+#'   this can be a simple reactive value like `input$click`, a call to a
+#'   reactive expression like `dataset()`, or even a complex expression inside
+#'   curly braces
+#' @param handlerExpr The expression to call whenever \code{eventExpr} is
+#'   invalidated. This should be a side-effect-producing action (the return
+#'   value will be ignored). It will be executed within an \code{\link{isolate}}
+#'   scope.
+#' @param valueExpr The expression that produces the return value of the
+#'   \code{eventReactive}. It will be executed within an \code{\link{isolate}}
+#'   scope.
+#' @param event.env The parent environment for \code{eventExpr}. By default,
+#'   this is the calling environment.
+#' @param event.quoted Is the \code{eventExpr} expression quoted? By default,
+#'   this is \code{FALSE}. This is useful when you want to use an expression
+#'   that is stored in a variable; to do so, it must be quoted with `quote()`.
+#' @param handler.env The parent environment for \code{handlerExpr}. By default,
+#'   this is the calling environment.
+#' @param handler.quoted Is the \code{handlerExpr} expression quoted? By
+#'   default, this is \code{FALSE}. This is useful when you want to use an
+#'   expression that is stored in a variable; to do so, it must be quoted with
+#'   `quote()`.
+#' @param value.env The parent environment for \code{valueExpr}. By default,
+#'   this is the calling environment.
+#' @param value.quoted Is the \code{valueExpr} expression quoted? By
+#'   default, this is \code{FALSE}. This is useful when you want to use an
+#'   expression that is stored in a variable; to do so, it must be quoted with
+#'   `quote()`.
+#' @param label A label for the observer or reactive, useful for debugging.
+#' @param suspended If \code{TRUE}, start the observer in a suspended state. If
+#'   \code{FALSE} (the default), start in a non-suspended state.
+#' @param priority An integer or numeric that controls the priority with which
+#'   this observer should be executed. An observer with a given priority level
+#'   will always execute sooner than all observers with a lower priority level.
+#'   Positive, negative, and zero values are allowed.
+#' @param domain See \link{domains}.
+#' @param autoDestroy If \code{TRUE} (the default), the observer will be
+#'   automatically destroyed when its domain (if any) ends.
+#' @param ignoreNULL Whether the action should be triggered (or value
+#'   calculated, in the case of \code{eventReactive}) when the input is
+#'   \code{NULL}. See Details.
+#' @return \code{observeEvent} returns an observer reference class object (see
+#'   \code{\link{observe}}). \code{eventReactive} returns a reactive expression
+#'   object (see \code{\link{reactive}}).
+#'
+#' @seealso \code{\link{actionButton}}
+#'
+#' @examples
+#' \donttest{
+#' ui <- fluidPage(
+#'   column(4,
+#'     numericInput("x", "Value", 5),
+#'     br(),
+#'     actionButton("button", "Show")
+#'   ),
+#'   column(8, tableOutput("table"))
+#' )
+#' server <- function(input, output) {
+#'   # Take an action every time button is pressed;
+#'   # here, we just print a message to the console
+#'   observeEvent(input$button, function() {
+#'     cat("Showing", input$x, "rows\n")
+#'   })
+#'   # Take a reactive dependency on input$button, but
+#'   # not on any of the stuff inside the function
+#'   df <- eventReactive(input$button, function() {
+#'     head(cars, input$x)
+#'   })
+#'   output$table <- renderTable({
+#'     df()
+#'   })
+#' }
+#' shinyApp(ui=ui, server=server)
+#' }
+#'
+#' @export
+observeEvent <- function(eventExpr, handlerExpr,
+  event.env = parent.frame(), event.quoted = FALSE,
+  handler.env = parent.frame(), handler.quoted = FALSE,
+  label=NULL, suspended=FALSE, priority=0, domain=getDefaultReactiveDomain(),
+  autoDestroy = TRUE, ignoreNULL = TRUE) {
+
+  eventFunc <- exprToFunction(eventExpr, event.env, event.quoted)
+  if (is.null(label))
+    label <- sprintf('observeEvent(%s)', paste(deparse(body(eventFunc)), collapse='\n'))
+
+  handlerFunc <- exprToFunction(handlerExpr, handler.env, handler.quoted)
+
+  invisible(observe({
+    e <- eventFunc()
+
+    if (ignoreNULL && isNullEvent(e)) {
+      return()
+    }
+
+    isolate(handlerFunc())
+  }, label = label, suspended = suspended, priority = priority, domain = domain,
+    autoDestroy = TRUE))
+}
+
+#' @rdname observeEvent
+#' @export
+eventReactive <- function(eventExpr, valueExpr,
+  event.env = parent.frame(), event.quoted = FALSE,
+  value.env = parent.frame(), value.quoted = FALSE,
+  label=NULL, domain=getDefaultReactiveDomain(),
+  ignoreNULL = TRUE) {
+
+  eventFunc <- exprToFunction(eventExpr, event.env, event.quoted)
+  if (is.null(label))
+    label <- sprintf('eventReactive(%s)', paste(deparse(body(eventFunc)), collapse='\n'))
+
+  handlerFunc <- exprToFunction(valueExpr, value.env, value.quoted)
+
+  invisible(reactive({
+    e <- eventFunc()
+
+    validate(need(
+      !ignoreNULL || !isNullEvent(e),
+      message = FALSE
+    ))
+
+    isolate(handlerFunc())
+  }, label = label, domain = domain))
+}
+
+isNullEvent <- function(value) {
+  is.null(value) || (inherits(value, 'shinyActionButtonValue') && value == 0)
+}

R/run-url.R

@@ -1,124 +1,31 @@
-#' Run a Shiny application from https://gist.github.com
-#'
-#' Download and launch a Shiny application that is hosted on GitHub as a gist.
-#'
-#' @param gist The identifier of the gist. For example, if the gist is
-#'   https://gist.github.com/jcheng5/3239667, then \code{3239667},
-#'   \code{'3239667'}, and \code{'https://gist.github.com/jcheng5/3239667'}
-#'   are all valid values.
-#' @param port The TCP port that the application should listen on. Defaults to
-#'   choosing a random port.
-#' @param launch.browser If true, the system's default web browser will be
-#'   launched automatically after the app is started. Defaults to true in
-#'   interactive sessions only.
-#'
-#' @examples
-#' \dontrun{
-#' runGist(3239667)
-#' runGist("https://gist.github.com/jcheng5/3239667")
-#'
-#' # Old URL format without username
-#' runGist("https://gist.github.com/3239667")
-#' }
-#'
-#' @export
-runGist <- function(gist,
-                    port=NULL,
-                    launch.browser=getOption('shiny.launch.browser',
-                                             interactive())) {
-
-  gistUrl <- if (is.numeric(gist) || grepl('^[0-9a-f]+$', gist)) {
-    sprintf('https://gist.github.com/%s/download', gist)
-  } else if(grepl('^https://gist.github.com/([^/]+/)?([0-9a-f]+)$', gist)) {
-    paste(gist, '/download', sep='')
-  } else {
-    stop('Unrecognized gist identifier format')
-  }
-
-  runUrl(gistUrl, filetype=".tar.gz", subdir=NULL, port=port,
-    launch.browser=launch.browser)
-}
-
-
-#' Run a Shiny application from a GitHub repository
-#'
-#' Download and launch a Shiny application that is hosted in a GitHub repository.
-#'
-#' @param repo Name of the repository
-#' @param username GitHub username
-#' @param ref Desired git reference. Could be a commit, tag, or branch
-#'   name. Defaults to \code{"master"}.
-#' @param subdir A subdirectory in the repository that contains the app. By
-#'   default, this function will run an app from the top level of the repo, but
-#'   you can use a path such as `\code{"inst/shinyapp"}.
-#' @param port The TCP port that the application should listen on. Defaults to
-#'   choosing a random port.
-#' @param launch.browser If true, the system's default web browser will be
-#'   launched automatically after the app is started. Defaults to true in
-#'   interactive sessions only.
-#'
-#' @examples
-#' \dontrun{
-#' runGitHub("shiny_example", "rstudio")
-#'
-#' # Can run an app from a subdirectory in the repo
-#' runGitHub("shiny_example", "rstudio", subdir = "inst/shinyapp/")
-#' }
-#'
-#' @export
-runGitHub <- function(repo, username = getOption("github.user"),
-  ref = "master", subdir = NULL, port = NULL,
-  launch.browser = getOption('shiny.launch.browser', interactive())) {
-
-  if (is.null(ref)) {
-    stop("Must specify either a ref. ")
-  }
-
-  message("Downloading github repo(s) ",
-    paste(repo, ref, sep = "/", collapse = ", "),
-    " from ",
-    paste(username, collapse = ", "))
-  name <- paste(username, "-", repo, sep = "")
-
-  url <- paste("https://github.com/", username, "/", repo, "/archive/",
-    ref, ".tar.gz", sep = "")
-
-  runUrl(url, subdir=subdir, port=port, launch.browser=launch.browser)
-}
-
-
 #' Run a Shiny application from a URL
 #'
-#' Download and launch a Shiny application that is hosted at a downloadable
-#' URL. The Shiny application must be saved in a .zip, .tar, or .tar.gz file.
-#' The Shiny application files must be contained in a subdirectory in the
-#' archive. For example, the files might be \code{myapp/server.r} and
-#' \code{myapp/ui.r}.
-#'
+#' \code{runUrl()} downloads and launches a Shiny application that is hosted at
+#' a downloadable URL. The Shiny application must be saved in a .zip, .tar, or
+#' .tar.gz file. The Shiny application files must be contained in the root
+#' directory or a subdirectory in the archive. For example, the files might be
+#' \code{myapp/server.r} and \code{myapp/ui.r}. The functions \code{runGitHub()}
+#' and \code{runGist()} are based on \code{runUrl()}, using URL's from GitHub
+#' (\url{https://github.com}) and GitHub gists (\url{https://gist.github.com}),
+#' respectively.
 #' @param url URL of the application.
 #' @param filetype The file type (\code{".zip"}, \code{".tar"}, or
 #'   \code{".tar.gz"}. Defaults to the file extension taken from the url.
 #' @param subdir A subdirectory in the repository that contains the app. By
 #'   default, this function will run an app from the top level of the repo, but
 #'   you can use a path such as `\code{"inst/shinyapp"}.
-#' @param port The TCP port that the application should listen on. Defaults to
-#'   choosing a random port.
-#' @param launch.browser If true, the system's default web browser will be
-#'   launched automatically after the app is started. Defaults to true in
-#'   interactive sessions only.
-#'
+#' @param ... Other arguments to be passed to \code{\link{runApp}()}, such as
+#'   \code{port} and \code{launch.browser}.
+#' @export
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' runUrl('https://github.com/rstudio/shiny_example/archive/master.tar.gz')
 #'
 #' # Can run an app from a subdirectory in the archive
 #' runUrl("https://github.com/rstudio/shiny_example/archive/master.zip",
 #'  subdir = "inst/shinyapp/")
 #' }
-#'
-#' @export
-runUrl <- function(url, filetype = NULL, subdir = NULL, port = NULL,
-  launch.browser = getOption('shiny.launch.browser', interactive())) {
+runUrl <- function(url, filetype = NULL, subdir = NULL, ...) {
 
   if (!is.null(subdir) && ".." %in% strsplit(subdir, '/')[[1]])
     stop("'..' not allowed in subdir")
@@ -137,6 +44,8 @@ runUrl <- function(url, filetype = NULL, subdir = NULL, port = NULL,
 
   message("Downloading ", url)
   filePath <- tempfile('shinyapp', fileext=fileext)
+  fileDir  <- tempfile('shinyapp')
+  dir.create(fileDir, showWarnings = FALSE)
   if (download(url, filePath, mode = "wb", quiet = TRUE) != 0)
     stop("Failed to download URL ", url)
   on.exit(unlink(filePath))
@@ -148,17 +57,78 @@ runUrl <- function(url, filetype = NULL, subdir = NULL, port = NULL,
     #   2) If the internal untar implementation is used, it chokes on the 'g'
     #      type flag that github uses (to stash their commit hash info).
     # By using our own forked/modified untar2 we sidestep both issues.
-    dirname <- untar2(filePath, list=TRUE)[1]
-    untar2(filePath, exdir = dirname(filePath))
+    first <- untar2(filePath, list=TRUE)[1]
+    untar2(filePath, exdir = fileDir)
 
   } else if (fileext == ".zip") {
-    dirname <- as.character(unzip(filePath, list=TRUE)$Name[1])
-    unzip(filePath, exdir = dirname(filePath))
+    first <- as.character(unzip(filePath, list=TRUE)$Name)[1]
+    unzip(filePath, exdir = fileDir)
+  }
+  on.exit(unlink(fileDir, recursive = TRUE), add = TRUE)
+
+  appdir <- file.path(fileDir, first)
+  if (!file_test('-d', appdir)) appdir <- dirname(appdir)
+
+  if (!is.null(subdir)) appdir <- file.path(appdir, subdir)
+  runApp(appdir, ...)
+}
+
+#' @rdname runUrl
+#' @param gist The identifier of the gist. For example, if the gist is
+#'   https://gist.github.com/jcheng5/3239667, then \code{3239667},
+#'   \code{'3239667'}, and \code{'https://gist.github.com/jcheng5/3239667'} are
+#'   all valid values.
+#' @export
+#' @examples
+#' \donttest{
+#' runGist(3239667)
+#' runGist("https://gist.github.com/jcheng5/3239667")
+#'
+#' # Old URL format without username
+#' runGist("https://gist.github.com/3239667")
+#' }
+#'
+runGist <- function(gist, ...) {
+
+  gistUrl <- if (is.numeric(gist) || grepl('^[0-9a-f]+$', gist)) {
+    sprintf('https://gist.github.com/%s/download', gist)
+  } else if(grepl('^https://gist.github.com/([^/]+/)?([0-9a-f]+)$', gist)) {
+    paste(gist, '/download', sep='')
+  } else {
+    stop('Unrecognized gist identifier format')
   }
 
-  appdir <- file.path(dirname(filePath), dirname)
-  on.exit(unlink(appdir, recursive = TRUE), add = TRUE)
-
-  appsubdir <- ifelse(is.null(subdir), appdir, file.path(appdir, subdir))
-  runApp(appsubdir, port=port, launch.browser=launch.browser)
+  runUrl(gistUrl, filetype=".tar.gz", ...)
+}
+
+
+#' @rdname runUrl
+#' @param repo Name of the repository.
+#' @param username GitHub username. If \code{repo} is of the form
+#'   \code{"username/repo"}, \code{username} will be taken from \code{repo}.
+#' @param ref Desired git reference. Could be a commit, tag, or branch name.
+#'   Defaults to \code{"master"}.
+#' @export
+#' @examples
+#' \donttest{
+#' runGitHub("shiny_example", "rstudio")
+#' # or runGitHub("rstudio/shiny_example")
+#'
+#' # Can run an app from a subdirectory in the repo
+#' runGitHub("shiny_example", "rstudio", subdir = "inst/shinyapp/")
+#' }
+runGitHub <- function(repo, username = getOption("github.user"),
+                      ref = "master", subdir = NULL, ...) {
+
+  if (grepl('/', repo)) {
+    res <- strsplit(repo, '/')[[1]]
+    if (length(res) != 2) stop("'repo' must be of the form 'username/repo'")
+    username <- res[1]
+    repo     <- res[2]
+  }
+
+  url <- paste("https://github.com/", username, "/", repo, "/archive/",
+               ref, ".tar.gz", sep = "")
+
+  runUrl(url, subdir=subdir, ...)
 }

R/server.R

@@ -0,0 +1,817 @@
+#' @include globals.R
+
+appsByToken <- Map$new()
+
+# Create a map for input handlers and register the defaults.
+inputHandlers <- Map$new()
+
+#' Register an Input Handler
+#'
+#' Adds an input handler for data of this type. When called, Shiny will use the
+#' function provided to refine the data passed back from the client (after being
+#' deserialized by RJSONIO) before making it available in the \code{input}
+#' variable of the \code{server.R} file.
+#'
+#' This function will register the handler for the duration of the R process
+#' (unless Shiny is explicitly reloaded). For that reason, the \code{type} used
+#' should be very specific to this package to minimize the risk of colliding
+#' with another Shiny package which might use this data type name. We recommend
+#' the format of "packageName.widgetName".
+#'
+#' Currently Shiny registers the following handlers: \code{shiny.matrix},
+#' \code{shiny.number}, and \code{shiny.date}.
+#'
+#' The \code{type} of a custom Shiny Input widget will be deduced using the
+#' \code{getType()} JavaScript function on the registered Shiny inputBinding.
+#' @param type The type for which the handler should be added -- should be a
+#' single-element character vector.
+#' @param fun The handler function. This is the function that will be used to
+#'   parse the data delivered from the client before it is available in the
+#'   \code{input} variable. The function will be called with the following three
+#'   parameters:
+#'    \enumerate{
+#'      \item{The value of this input as provided by the client, deserialized
+#'      using RJSONIO.}
+#'      \item{The \code{shinysession} in which the input exists.}
+#'      \item{The name of the input.}
+#'    }
+#' @param force If \code{TRUE}, will overwrite any existing handler without
+#' warning. If \code{FALSE}, will throw an error if this class already has
+#' a handler defined.
+#' @examples
+#' \dontrun{
+#' # Register an input handler which rounds a input number to the nearest integer
+#' registerInputHandler("mypackage.validint", function(x, shinysession, name) {
+#'   if (is.null(x)) return(NA)
+#'   round(x)
+#' })
+#'
+#' ## On the Javascript side, the associated input binding must have a corresponding getType method:
+#' getType: function(el) {
+#'   return "mypackage.validint";
+#' }
+#'
+#' }
+#' @seealso \code{\link{removeInputHandler}}
+#' @export
+registerInputHandler <- function(type, fun, force=FALSE){
+  if (inputHandlers$containsKey(type) && !force){
+    stop("There is already an input handler for type: ", type)
+  }
+  inputHandlers$set(type, fun)
+}
+
+#' Deregister an Input Handler
+#'
+#' Removes an Input Handler. Rather than using the previously specified handler
+#' for data of this type, the default RJSONIO serialization will be used.
+#'
+#' @param type The type for which handlers should be removed.
+#' @return The handler previously associated with this \code{type}, if one
+#'   existed. Otherwise, \code{NULL}.
+#' @seealso \code{\link{registerInputHandler}}
+#' @export
+removeInputHandler <- function(type){
+  inputHandlers$remove(type)
+}
+
+# Takes a list-of-lists and returns a matrix. The lists
+# must all be the same length. NULL is replaced by NA.
+registerInputHandler("shiny.matrix", function(data, ...) {
+  if (length(data) == 0)
+    return(matrix(nrow=0, ncol=0))
+
+  m <- matrix(unlist(lapply(data, function(x) {
+    sapply(x, function(y) {
+      ifelse(is.null(y), NA, y)
+    })
+  })), nrow = length(data[[1]]), ncol = length(data))
+  return(m)
+})
+
+registerInputHandler("shiny.number", function(val, ...){
+  ifelse(is.null(val), NA, val)
+})
+
+registerInputHandler("shiny.date", function(val, ...){
+  # First replace NULLs with NA, then convert to Date vector
+  datelist <- ifelse(lapply(val, is.null), NA, val)
+  as.Date(unlist(datelist))
+})
+
+registerInputHandler("shiny.action", function(val, ...) {
+  # mark up the action button value with a special class so we can recognize it later
+  class(val) <- c(class(val), "shinyActionButtonValue")
+  val
+})
+
+# Provide a character representation of the WS that can be used
+# as a key in a Map.
+wsToKey <- function(WS) {
+  as.character(WS$socket)
+}
+
+.globals$clients <- function(req) NULL
+
+
+clearClients <- function() {
+  .globals$clients <- function(req) NULL
+}
+
+
+registerClient <- function(client) {
+  .globals$clients <- append(.globals$clients, client)
+}
+
+
+.globals$resources <- list()
+
+.globals$showcaseDefault <- 0
+
+.globals$showcaseOverride <- FALSE
+
+#' Resource Publishing
+#'
+#' Adds a directory of static resources to Shiny's web server, with the given
+#' path prefix. Primarily intended for package authors to make supporting
+#' JavaScript/CSS files available to their components.
+#'
+#' @param prefix The URL prefix (without slashes). Valid characters are a-z,
+#'   A-Z, 0-9, hyphen, period, and underscore; and must begin with a-z or A-Z.
+#'   For example, a value of 'foo' means that any request paths that begin with
+#'   '/foo' will be mapped to the given directory.
+#' @param directoryPath The directory that contains the static resources to be
+#'   served.
+#'
+#' @details You can call \code{addResourcePath} multiple times for a given
+#'   \code{prefix}; only the most recent value will be retained. If the
+#'   normalized \code{directoryPath} is different than the directory that's
+#'   currently mapped to the \code{prefix}, a warning will be issued.
+#'
+#' @seealso \code{\link{singleton}}
+#'
+#' @examples
+#' addResourcePath('datasets', system.file('data', package='datasets'))
+#'
+#' @export
+addResourcePath <- function(prefix, directoryPath) {
+  prefix <- prefix[1]
+  if (!grepl('^[a-z][a-z0-9\\-_.]*$', prefix, ignore.case=TRUE, perl=TRUE)) {
+    stop("addResourcePath called with invalid prefix; please see documentation")
+  }
+
+  if (prefix %in% c('shared')) {
+    stop("addResourcePath called with the reserved prefix '", prefix, "'; ",
+         "please use a different prefix")
+  }
+
+  directoryPath <- normalizePath(directoryPath, mustWork=TRUE)
+
+  existing <- .globals$resources[[prefix]]
+
+  .globals$resources[[prefix]] <- list(directoryPath=directoryPath,
+                                       func=staticHandler(directoryPath))
+}
+
+resourcePathHandler <- function(req) {
+  if (!identical(req$REQUEST_METHOD, 'GET'))
+    return(NULL)
+
+  path <- req$PATH_INFO
+
+  match <- regexpr('^/([^/]+)/', path, perl=TRUE)
+  if (match == -1)
+    return(NULL)
+  len <- attr(match, 'capture.length')
+  prefix <- substr(path, 2, 2 + len - 1)
+
+  resInfo <- .globals$resources[[prefix]]
+  if (is.null(resInfo))
+    return(NULL)
+
+  suffix <- substr(path, 2 + len, nchar(path))
+
+  subreq <- as.environment(as.list(req, all.names=TRUE))
+  subreq$PATH_INFO <- suffix
+  subreq$SCRIPT_NAME <- paste(subreq$SCRIPT_NAME, substr(path, 1, 2 + len), sep='')
+
+  return(resInfo$func(subreq))
+}
+
+#' Define Server Functionality
+#'
+#' Defines the server-side logic of the Shiny application. This generally
+#' involves creating functions that map user inputs to various kinds of output.
+#'
+#' @param func The server function for this application. See the details section
+#'   for more information.
+#'
+#' @details
+#' Call \code{shinyServer} from your application's \code{server.R} file, passing
+#' in a "server function" that provides the server-side logic of your
+#' application.
+#'
+#' The server function will be called when each client (web browser) first loads
+#' the Shiny application's page. It must take an \code{input} and an
+#' \code{output} parameter. Any return value will be ignored. It also takes an
+#' optional \code{session} parameter, which is used when greater control is
+#' needed.
+#'
+#' See the \href{http://rstudio.github.com/shiny/tutorial/}{tutorial} for more
+#' on how to write a server function.
+#'
+#' @examples
+#' \dontrun{
+#' # A very simple Shiny app that takes a message from the user
+#' # and outputs an uppercase version of it.
+#' shinyServer(function(input, output, session) {
+#'   output$uppercase <- renderText({
+#'     toupper(input$message)
+#'   })
+#' })
+#' }
+#'
+#' @export
+shinyServer <- function(func) {
+  .globals$server <- list(func)
+  invisible(func)
+}
+
+decodeMessage <- function(data) {
+  readInt <- function(pos) {
+    packBits(rawToBits(data[pos:(pos+3)]), type='integer')
+  }
+
+  if (readInt(1) != 0x01020202L) {
+    # use native encoding for the message
+    nativeData <- iconv(rawToChar(data), 'UTF-8')
+    return(fromJSON(nativeData, asText=TRUE, simplify=FALSE))
+  }
+
+  i <- 5
+  parts <- list()
+  while (i <= length(data)) {
+    length <- readInt(i)
+    i <- i + 4
+    if (length != 0)
+      parts <- append(parts, list(data[i:(i+length-1)]))
+    else
+      parts <- append(parts, list(raw(0)))
+    i <- i + length
+  }
+
+  mainMessage <- decodeMessage(parts[[1]])
+  mainMessage$blobs <- parts[2:length(parts)]
+  return(mainMessage)
+}
+
+createAppHandlers <- function(httpHandlers, serverFuncSource) {
+  appvars <- new.env()
+  appvars$server <- NULL
+
+  sys.www.root <- system.file('www', package='shiny')
+
+  # This value, if non-NULL, must be present on all HTTP and WebSocket
+  # requests as the Shiny-Shared-Secret header or else access will be
+  # denied (403 response for HTTP, and instant close for websocket).
+  sharedSecret <- getOption('shiny.sharedSecret')
+
+  appHandlers <- list(
+    http = joinHandlers(c(
+      sessionHandler,
+      httpHandlers,
+      sys.www.root,
+      resourcePathHandler,
+      reactLogHandler)),
+    ws = function(ws) {
+      if (!is.null(sharedSecret)
+          && !identical(sharedSecret, ws$request$HTTP_SHINY_SHARED_SECRET)) {
+        ws$close()
+        return(TRUE)
+      }
+
+      shinysession <- ShinySession$new(ws)
+      appsByToken$set(shinysession$token, shinysession)
+      shinysession$setShowcase(.globals$showcaseDefault)
+
+      ws$onMessage(function(binary, msg) {
+        # To ease transition from websockets-based code. Should remove once we're stable.
+        if (is.character(msg))
+          msg <- charToRaw(msg)
+
+        if (isTRUE(getOption('shiny.trace'))) {
+          if (binary)
+            message("RECV ", '$$binary data$$')
+          else
+            message("RECV ", rawToChar(msg))
+        }
+
+        if (identical(charToRaw("\003\xe9"), msg))
+          return()
+
+        msg <- decodeMessage(msg)
+
+        # Do our own list simplifying here. sapply/simplify2array give names to
+        # character vectors, which is rarely what we want.
+        if (!is.null(msg$data)) {
+          for (name in names(msg$data)) {
+            val <- msg$data[[name]]
+
+            splitName <- strsplit(name, ':')[[1]]
+            if (length(splitName) > 1) {
+              msg$data[[name]] <- NULL
+
+              if (!inputHandlers$containsKey(splitName[[2]])){
+                # No input handler registered for this type
+                stop("No handler registered for for type ", name)
+              }
+
+              msg$data[[ splitName[[1]] ]] <-
+                  inputHandlers$get(splitName[[2]])(
+                      val,
+                      shinysession,
+                      splitName[[1]] )
+            }
+            else if (is.list(val) && is.null(names(val))) {
+              val_flat <- unlist(val, recursive = TRUE)
+
+              if (is.null(val_flat)) {
+                # This is to assign NULL instead of deleting the item
+                msg$data[name] <- list(NULL)
+              } else {
+                msg$data[[name]] <- val_flat
+              }
+            }
+          }
+        }
+
+        switch(
+          msg$method,
+          init = {
+
+            serverFunc <- serverFuncSource()
+            if (!identicalFunctionBodies(serverFunc, appvars$server)) {
+              appvars$server <- serverFunc
+              if (!is.null(appvars$server))
+              {
+                # Tag this function as the Shiny server function. A debugger may use this
+                # tag to give this function special treatment.
+                # It's very important that it's appvars$server itself and NOT a copy that
+                # is invoked, otherwise new breakpoints won't be picked up.
+                attr(appvars$server, "shinyServerFunction") <- TRUE
+                registerDebugHook("server", appvars, "Server Function")
+              }
+            }
+
+            # Check for switching into/out of showcase mode
+            if (.globals$showcaseOverride &&
+                exists(".clientdata_url_search", where = msg$data)) {
+              mode <- showcaseModeOfQuerystring(msg$data$.clientdata_url_search)
+              if (!is.null(mode))
+                shinysession$setShowcase(mode)
+            }
+
+            shinysession$manageInputs(msg$data)
+
+            # The client tells us what singletons were rendered into
+            # the initial page
+            if (!is.null(msg$data$.clientdata_singletons)) {
+              shinysession$singletons <<- strsplit(
+                msg$data$.clientdata_singletons, ',')[[1]]
+            }
+
+            local({
+              args <- list(
+                input=shinysession$input,
+                output=.createOutputWriter(shinysession))
+
+              # The clientData and session arguments are optional; check if
+              # each exists
+              if ('clientData' %in% names(formals(serverFunc)))
+                args$clientData <- shinysession$clientData
+
+              if ('session' %in% names(formals(serverFunc)))
+                args$session <- shinysession$session
+
+              withReactiveDomain(shinysession$session, {
+                do.call(appvars$server, args)
+              })
+            })
+          },
+          update = {
+            shinysession$manageInputs(msg$data)
+          },
+          shinysession$dispatch(msg)
+        )
+        shinysession$manageHiddenOutputs()
+
+        if (exists(".shiny__stdout", globalenv()) &&
+            exists("HTTP_GUID", ws$request)) {
+          # safe to assume we're in shiny-server
+          shiny_stdout <- get(".shiny__stdout", globalenv())
+
+          # eNter a flushReact
+          writeLines(paste("_n_flushReact ", get("HTTP_GUID", ws$request),
+                           " @ ", sprintf("%.3f", as.numeric(Sys.time())),
+                           sep=""), con=shiny_stdout)
+          flush(shiny_stdout)
+
+          flushReact()
+
+          # eXit a flushReact
+          writeLines(paste("_x_flushReact ", get("HTTP_GUID", ws$request),
+                           " @ ", sprintf("%.3f", as.numeric(Sys.time())),
+                           sep=""), con=shiny_stdout)
+          flush(shiny_stdout)
+        } else {
+          flushReact()
+        }
+        lapply(appsByToken$values(), function(shinysession) {
+          shinysession$flushOutput()
+          NULL
+        })
+      })
+
+      ws$onClose(function() {
+        shinysession$wsClosed()
+        appsByToken$remove(shinysession$token)
+      })
+
+      return(TRUE)
+    }
+  )
+  return(appHandlers)
+}
+
+getEffectiveBody <- function(func) {
+  # Note: NULL values are OK. isS4(NULL) returns FALSE, body(NULL)
+  # returns NULL.
+  if (isS4(func) && class(func) == "functionWithTrace")
+    body(func@original)
+  else
+    body(func)
+}
+
+identicalFunctionBodies <- function(a, b) {
+  identical(getEffectiveBody(a), getEffectiveBody(b))
+}
+
+handlerManager <- HandlerManager$new()
+
+addSubApp <- function(appObj, autoRemove = TRUE) {
+  path <- createUniqueId(16, "/app")
+  appHandlers <- createAppHandlers(appObj$httpHandler, appObj$serverFuncSource)
+
+  # remove the leading / from the path so a relative path is returned
+  # (needed for the case where the root URL for the Shiny app isn't /, such
+  # as portmapped URLs)
+  finalPath <- paste(
+    substr(path, 2, nchar(path)),
+    "/?w=", workerId(),
+    "&__subapp__=1",
+    sep="")
+  handlerManager$addHandler(routeHandler(path, appHandlers$http), finalPath)
+  handlerManager$addWSHandler(routeWSHandler(path, appHandlers$ws), finalPath)
+
+  if (autoRemove) {
+    # If a session is currently active, remove this subapp automatically when
+    # the current session ends
+    onReactiveDomainEnded(getDefaultReactiveDomain(), function() {
+      removeSubApp(finalPath)
+    })
+  }
+
+  return(finalPath)
+}
+
+removeSubApp <- function(path) {
+  handlerManager$removeHandler(path)
+  handlerManager$removeWSHandler(path)
+}
+
+startApp <- function(appObj, port, host, quiet) {
+  appHandlers <- createAppHandlers(appObj$httpHandler, appObj$serverFuncSource)
+  handlerManager$addHandler(appHandlers$http, "/", tail = TRUE)
+  handlerManager$addWSHandler(appHandlers$ws, "/", tail = TRUE)
+
+  if (is.numeric(port) || is.integer(port)) {
+    if (!quiet) {
+      message('\n', 'Listening on http://', host, ':', port)
+    }
+    return(startServer(host, port, handlerManager$createHttpuvApp()))
+  } else if (is.character(port)) {
+    if (!quiet) {
+      message('\n', 'Listening on domain socket ', port)
+    }
+    mask <- attr(port, 'mask')
+    return(startPipeServer(port, mask, handlerManager$createHttpuvApp()))
+  }
+}
+
+# Run an application that was created by \code{\link{startApp}}. This
+# function should normally be called in a \code{while(TRUE)} loop.
+serviceApp <- function() {
+  if (timerCallbacks$executeElapsed()) {
+    for (shinysession in appsByToken$values()) {
+      shinysession$manageHiddenOutputs()
+    }
+
+    flushReact()
+
+    for (shinysession in appsByToken$values()) {
+      shinysession$flushOutput()
+    }
+  }
+
+  # If this R session is interactive, then call service() with a short timeout
+  # to keep the session responsive to user input
+  maxTimeout <- ifelse(interactive(), 100, 1000)
+
+  timeout <- max(1, min(maxTimeout, timerCallbacks$timeToNextEvent()))
+  service(timeout)
+}
+
+.shinyServerMinVersion <- '0.3.4'
+
+#' Run Shiny Application
+#'
+#' Runs a Shiny application. This function normally does not return; interrupt R
+#' to stop the application (usually by pressing Ctrl+C or Esc).
+#'
+#' The host parameter was introduced in Shiny 0.9.0. Its default value of
+#' \code{"127.0.0.1"} means that, contrary to previous versions of Shiny, only
+#' the current machine can access locally hosted Shiny apps. To allow other
+#' clients to connect, use the value \code{"0.0.0.0"} instead (which was the
+#' value that was hard-coded into Shiny in 0.8.0 and earlier).
+#'
+#' @param appDir The directory of the application. Should contain
+#'   \code{server.R}, plus, either \code{ui.R} or a \code{www} directory that
+#'   contains the file \code{index.html}. Defaults to the working directory.
+#'   Instead of a directory, this could be a list with \code{ui} and
+#'   \code{server} components, or a Shiny app object created by
+#'   \code{\link{shinyApp}}.
+#' @param port The TCP port that the application should listen on. Defaults to
+#'   choosing a random port.
+#' @param launch.browser If true, the system's default web browser will be
+#'   launched automatically after the app is started. Defaults to true in
+#'   interactive sessions only. This value of this parameter can also be a
+#'   function to call with the application's URL.
+#' @param host The IPv4 address that the application should listen on. Defaults
+#'   to the \code{shiny.host} option, if set, or \code{"127.0.0.1"} if not. See
+#'   Details.
+#' @param workerId Can generally be ignored. Exists to help some editions of
+#'   Shiny Server Pro route requests to the correct process.
+#' @param quiet Should Shiny status messages be shown? Defaults to FALSE.
+#' @param display.mode The mode in which to display the application. If set to
+#'   the value \code{"showcase"}, shows application code and metadata from a
+#'   \code{DESCRIPTION} file in the application directory alongside the
+#'   application. If set to \code{"normal"}, displays the application normally.
+#'   Defaults to \code{"auto"}, which displays the application in the mode given
+#'   in its \code{DESCRIPTION} file, if any.
+#'
+#' @examples
+#' \dontrun{
+#' # Start app in the current working directory
+#' runApp()
+#'
+#' # Start app in a subdirectory called myapp
+#' runApp("myapp")
+#' }
+#'
+#' \donttest{
+#' # Apps can be run without a server.r and ui.r file
+#' runApp(list(
+#'   ui = bootstrapPage(
+#'     numericInput('n', 'Number of obs', 100),
+#'     plotOutput('plot')
+#'   ),
+#'   server = function(input, output) {
+#'     output$plot <- renderPlot({ hist(runif(input$n)) })
+#'   }
+#' ))
+#'
+#'
+#' # Running a Shiny app object
+#' app <- shinyApp(
+#'   ui = bootstrapPage(
+#'     numericInput('n', 'Number of obs', 100),
+#'     plotOutput('plot')
+#'   ),
+#'   server = function(input, output) {
+#'     output$plot <- renderPlot({ hist(runif(input$n)) })
+#'   }
+#' )
+#'
+#' runApp(app)
+#' }
+#' @export
+runApp <- function(appDir=getwd(),
+                   port=NULL,
+                   launch.browser=getOption('shiny.launch.browser',
+                                            interactive()),
+                   host=getOption('shiny.host', '127.0.0.1'),
+                   workerId="", quiet=FALSE,
+                   display.mode=c("auto", "normal", "showcase")) {
+  on.exit({
+    handlerManager$clear()
+  }, add = TRUE)
+
+
+  if (is.null(host) || is.na(host))
+    host <- '0.0.0.0'
+
+  # Make warnings print immediately
+  ops <- options(warn = 1)
+  on.exit(options(ops), add = TRUE)
+
+  workerId(workerId)
+
+  if (nzchar(Sys.getenv('SHINY_PORT'))) {
+    # If SHINY_PORT is set, we're running under Shiny Server. Check the version
+    # to make sure it is compatible. Older versions of Shiny Server don't set
+    # SHINY_SERVER_VERSION, those will return "" which is considered less than
+    # any valid version.
+    ver <- Sys.getenv('SHINY_SERVER_VERSION')
+    if (compareVersion(ver, .shinyServerMinVersion) < 0) {
+      warning('Shiny Server v', .shinyServerMinVersion,
+              ' or later is required; please upgrade!')
+    }
+  }
+
+  # Showcase mode is disabled by default; it must be explicitly enabled in
+  # either the DESCRIPTION file for directory-based apps, or via
+  # the display.mode parameter. The latter takes precedence.
+  setShowcaseDefault(0)
+
+  # If appDir specifies a path, and display mode is specified in the
+  # DESCRIPTION file at that path, apply it here.
+  if (is.character(appDir)) {
+    desc <- file.path.ci(appDir, "DESCRIPTION")
+    if (file.exists(desc)) {
+      con <- file(desc, encoding = checkEncoding(desc))
+      on.exit(close(con), add = TRUE)
+      settings <- read.dcf(con)
+      if ("DisplayMode" %in% colnames(settings)) {
+        mode <- settings[1,"DisplayMode"]
+        if (mode == "Showcase") {
+          setShowcaseDefault(1)
+        }
+      }
+    }
+  }
+
+  # If display mode is specified as an argument, apply it (overriding the
+  # value specified in DESCRIPTION, if any).
+  display.mode <- match.arg(display.mode)
+  if (display.mode == "normal")
+    setShowcaseDefault(0)
+  else if (display.mode == "showcase")
+    setShowcaseDefault(1)
+
+  require(shiny)
+
+  # determine port if we need to
+  if (is.null(port)) {
+
+    # Try up to 20 random ports. If we don't succeed just plow ahead
+    # with the final value we tried, and let the "real" startServer
+    # somewhere down the line fail and throw the error to the user.
+    #
+    # If we (think we) succeed, save the value as .globals$lastPort,
+    # and try that first next time the user wants a random port.
+
+    for (i in 1:20) {
+      if (!is.null(.globals$lastPort)) {
+        port <- .globals$lastPort
+        .globals$lastPort <- NULL
+      }
+      else {
+        # Try up to 20 random ports
+        port <- p_randomInt(3000, 8000)
+      }
+
+      # Test port to see if we can use it
+      tmp <- try(startServer(host, port, list()), silent=TRUE)
+      if (!inherits(tmp, 'try-error')) {
+        stopServer(tmp)
+        .globals$lastPort <- port
+        break
+      }
+    }
+  }
+
+  appParts <- as.shiny.appobj(appDir)
+  if (!is.null(appParts$onStart))
+    appParts$onStart()
+  if (!is.null(appParts$onEnd))
+    on.exit(appParts$onEnd(), add = TRUE)
+
+  server <- startApp(appParts, port, host, quiet)
+
+  on.exit({
+    stopServer(server)
+  }, add = TRUE)
+
+  if (!is.character(port)) {
+    # http://0.0.0.0/ doesn't work on QtWebKit (i.e. RStudio viewer)
+    browseHost <- if (identical(host, "0.0.0.0")) "127.0.0.1" else host
+
+    appUrl <- paste("http://", browseHost, ":", port, sep="")
+    if (is.function(launch.browser))
+      launch.browser(appUrl)
+    else if (launch.browser)
+      utils::browseURL(appUrl)
+  } else {
+    appUrl <- NULL
+  }
+
+  # call application hooks
+  callAppHook("onAppStart", appUrl)
+  on.exit({
+    callAppHook("onAppStop", appUrl)
+  }, add = TRUE)
+
+  .globals$retval <- NULL
+  .globals$stopped <- FALSE
+  shinyCallingHandlers(
+    while (!.globals$stopped) {
+      serviceApp()
+      Sys.sleep(0.001)
+    }
+  )
+
+  return(.globals$retval)
+}
+
+#' Stop the currently running Shiny app
+#'
+#' Stops the currently running Shiny app, returning control to the caller of
+#' \code{\link{runApp}}.
+#'
+#' @param returnValue The value that should be returned from
+#'   \code{\link{runApp}}.
+#'
+#' @export
+stopApp <- function(returnValue = NULL) {
+  .globals$retval <- returnValue
+  .globals$stopped <- TRUE
+  httpuv::interrupt()
+}
+
+#' Run Shiny Example Applications
+#'
+#' Launch Shiny example applications, and optionally, your system's web browser.
+#'
+#' @param example The name of the example to run, or \code{NA} (the default) to
+#'   list the available examples.
+#' @param port The TCP port that the application should listen on. Defaults to
+#'   choosing a random port.
+#' @param launch.browser If true, the system's default web browser will be
+#'   launched automatically after the app is started. Defaults to true in
+#'   interactive sessions only.
+#' @param host The IPv4 address that the application should listen on. Defaults
+#'   to the \code{shiny.host} option, if set, or \code{"127.0.0.1"} if not.
+#' @param display.mode The mode in which to display the example. Defaults to
+#'   \code{showcase}, but may be set to \code{normal} to see the example without
+#'   code or commentary.
+#'
+#' @examples
+#' \donttest{
+#' # List all available examples
+#' runExample()
+#'
+#' # Run one of the examples
+#' runExample("01_hello")
+#'
+#' # Print the directory containing the code for all examples
+#' system.file("examples", package="shiny")
+#' }
+#' @export
+runExample <- function(example=NA,
+                       port=NULL,
+                       launch.browser=getOption('shiny.launch.browser',
+                                                interactive()),
+                       host=getOption('shiny.host', '127.0.0.1'),
+                       display.mode=c("auto", "normal", "showcase")) {
+  examplesDir <- system.file('examples', package='shiny')
+  dir <- resolve(examplesDir, example)
+  if (is.null(dir)) {
+    if (is.na(example)) {
+      errFun <- message
+      errMsg <- ''
+    }
+    else {
+      errFun <- stop
+      errMsg <- paste('Example', example, 'does not exist. ')
+    }
+
+    errFun(errMsg,
+           'Valid examples are "',
+           paste(list.files(examplesDir), collapse='", "'),
+           '"')
+  }
+  else {
+    runApp(dir, port = port, host = host, launch.browser = launch.browser,
+           display.mode = display.mode)
+  }
+}

R/sessioncontext.R

@@ -1,20 +0,0 @@
-# Keeps the context associated with a ShinySession reference object for the
-# duration of a request. Used to emit reactive evaluation information to the
-# appropriate session when showcase mode is enabled.
-
-.sessionContext <- new.env(parent=emptyenv())
-.beginShowcaseSessionContext <- function(session) {
-  assign("session", session, envir = .sessionContext)
-}
-
-.endShowcaseSessionContext <- function() {
-  if (exists("session", where = .sessionContext))
-    remove("session", envir = .sessionContext)
-}
-
-.getShowcaseSessionContext <- function() {
-  if (exists("session", where = .sessionContext))
-    .sessionContext$session
-  else
-    NULL
-}

R/shinyui.R

@@ -1,142 +1,5 @@
-#' @rdname builder
-#' @export
-p <- function(...) tags$p(...)
-
-#' @rdname builder
-#' @export
-h1 <- function(...) tags$h1(...)
-
-#' @rdname builder
-#' @export
-h2 <- function(...) tags$h2(...)
-
-#' @rdname builder
-#' @export
-h3 <- function(...) tags$h3(...)
-
-#' @rdname builder
-#' @export
-h4 <- function(...) tags$h4(...)
-
-#' @rdname builder
-#' @export
-h5 <- function(...) tags$h5(...)
-
-#' @rdname builder
-#' @export
-h6 <- function(...) tags$h6(...)
-
-#' @rdname builder
-#' @export
-a <- function(...) tags$a(...)
-
-#' @rdname builder
-#' @export
-br <- function(...) tags$br(...)
-
-#' @rdname builder
-#' @export
-div <- function(...) tags$div(...)
-
-#' @rdname builder
-#' @export
-span <- function(...) tags$span(...)
-
-#' @rdname builder
-#' @export
-pre <- function(...) tags$pre(...)
-
-#' @rdname builder
-#' @export
-code <- function(...) tags$code(...)
-
-#' @rdname builder
-#' @export
-img <- function(...) tags$img(...)
-
-#' @rdname builder
-#' @export
-strong <- function(...) tags$strong(...)
-
-#' @rdname builder
-#' @export
-em <- function(...) tags$em(...)
-
-#' @rdname builder
-#' @export
-hr <- function(...) tags$hr(...)
-
-#' Include Content From a File
-#'
-#' Include HTML, text, or rendered Markdown into a \link[=shinyUI]{Shiny UI}.
-#'
-#' These functions provide a convenient way to include an extensive amount of
-#' HTML, textual, Markdown, CSS, or JavaScript content, rather than using a
-#' large literal R string.
-#'
-#' @note \code{includeText} escapes its contents, but does no other processing.
-#'   This means that hard breaks and multiple spaces will be rendered as they
-#'   usually are in HTML: as a single space character. If you are looking for
-#'   preformatted text, wrap the call with \code{\link{pre}}, or consider using
-#'   \code{includeMarkdown} instead.
-#'
-#' @note The \code{includeMarkdown} function requires the \code{markdown}
-#'   package.
-#'
-#' @param path The path of the file to be included. It is highly recommended to
-#'   use a relative path (the base path being the Shiny application directory),
-#'   not an absolute path.
-#'
-#' @rdname include
-#' @name include
-#' @aliases includeHTML
-#' @export
-includeHTML <- function(path) {
-  dependsOnFile(path)
-  lines <- readLines(path, warn=FALSE, encoding='UTF-8')
-  return(HTML(paste(lines, collapse='\r\n')))
-}
-
-#' @rdname include
-#' @export
-includeText <- function(path) {
-  dependsOnFile(path)
-  lines <- readLines(path, warn=FALSE, encoding='UTF-8')
-  return(paste(lines, collapse='\r\n'))
-}
-
-#' @rdname include
-#' @export
-includeMarkdown <- function(path) {
-  if (!require(markdown))
-    stop("Markdown package is not installed")
-
-  dependsOnFile(path)
-  html <- markdown::markdownToHTML(path, fragment.only=TRUE)
-  Encoding(html) <- 'UTF-8'
-  return(HTML(html))
-}
-
-#' @param ... Any additional attributes to be applied to the generated tag.
-#' @rdname include
-#' @export
-includeCSS <- function(path, ...) {
-  dependsOnFile(path)
-  lines <- readLines(path, warn=FALSE, encoding='UTF-8')
-  args <- list(...)
-  if (is.null(args$type))
-    args$type <- 'text/css'
-  return(do.call(tags$style,
-                 c(list(HTML(paste(lines, collapse='\r\n'))), args)))
-}
-
-#' @rdname include
-#' @export
-includeScript <- function(path, ...) {
-  dependsOnFile(path)
-  lines <- readLines(path, warn=FALSE, encoding='UTF-8')
-  return(tags$script(HTML(paste(lines, collapse='\r\n')), ...))
-}
+#' @include globals.R
+NULL
 
 #' Load the MathJax library and typeset math expressions
 #'
@@ -151,138 +14,119 @@ includeScript <- function(path, ...) {
 #' # now we can just write "static" content without withMathJax()
 #' div("more math here $$\\sqrt{2}$$")
 withMathJax <- function(...) {
-  path <- 'https://c328740.ssl.cf1.rackcdn.com/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'
+  path <- 'https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'
   tagList(
     tags$head(
-      singleton(tags$script(HTML('window.MathJax = {skipStartupTypeset: true};'))),
       singleton(tags$script(src = path, type = 'text/javascript'))
     ),
     ...,
-    tags$script(HTML('$(function() {
-                        setTimeout(function() {MathJax.Hub.Typeset();}, 200);
-                      });'))
+    tags$script(HTML('MathJax.Hub.Queue(["Typeset", MathJax.Hub]);'))
   )
 }
 
-#' Include Content Only Once
-#'
-#' Use \code{singleton} to wrap contents (tag, text, HTML, or lists) that should
-#' be included in the generated document only once, yet may appear in the
-#' document-generating code more than once. Only the first appearance of the
-#' content (in document order) will be used. Useful for custom components that
-#' have JavaScript files or stylesheets.
-#'
-#' @param x A \code{\link{tag}}, text, \code{\link{HTML}}, or list.
-#'
-#' @export
-singleton <- function(x) {
-  class(x) <- c(class(x), 'shiny.singleton')
-  return(x)
-}
-
 renderPage <- function(ui, connection, showcase=0) {
 
+  if (showcase > 0)
+    ui <- showcaseUI(ui)
+
+  # Wrap ui in body tag if it doesn't already have a single top-level body tag.
+  if (!(inherits(ui, "shiny.tag") && ui$name == "body"))
+    ui <- tags$body(ui)
+
   result <- renderTags(ui)
 
+  deps <- c(
+    list(
+      htmlDependency("json2", "2014.02.04", c(href="shared"), script = "json2-min.js"),
+      htmlDependency("jquery", "1.11.0", c(href="shared"), script = "jquery.min.js"),
+      htmlDependency("shiny", packageVersion("shiny"), c(href="shared"),
+        script = "shiny.min.js", stylesheet = "shiny.css")
+    ),
+    result$dependencies
+  )
+  deps <- resolveDependencies(deps)
+  deps <- lapply(deps, createWebDependency)
+  depStr <- paste(sapply(deps, function(dep) {
+    sprintf("%s[%s]", dep$name, dep$version)
+  }), collapse = ";")
+  depHtml <- renderDependencies(deps, "href")
+
   # write preamble
   writeLines(c('<!DOCTYPE html>',
                '<html>',
                '<head>',
                '  <meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>',
-               '  <script src="shared/jquery.js" type="text/javascript"></script>',
-               '  <script src="shared/shiny.js" type="text/javascript"></script>',
-               '  <link rel="stylesheet" type="text/css" href="shared/shiny.css"/>',
                sprintf('  <script type="application/shiny-singletons">%s</script>',
                        paste(result$singletons, collapse = ',')
-               )),
+               ),
+               sprintf('  <script type="application/html-dependencies">%s</script>',
+                       depStr
+               ),
+               depHtml
+              ),
               con = connection)
-  if (showcase > 0) {
-    writeLines(as.character(showcaseHead()), con = connection)
-  }
   writeLines(c(result$head,
                '</head>',
-               '<body>',
                recursive=TRUE),
              con = connection)
 
-  if (showcase > 0) {
-    # in showcase mode, emit containing elements and app HTML
-    writeLines(as.character(showcaseBody(result$html)),
-               con = connection)
-  } else {
-    # in normal mode, write UI html directly to connection
-    writeLines(result$html, con = connection)
-  }
+  writeLines(result$html, con = connection)
 
   # write end document
-  writeLines(c('</body>',
-               '</html>'),
+  writeLines('</html>',
              con = connection)
 }
 
 #' Create a Shiny UI handler
 #'
-#' Register a UI handler by providing a UI definition (created with e.g.
-#' \link{pageWithSidebar}) and web server path (typically "/", the default
-#' value).
+#' Historically this function was used in ui.R files to register a user
+#' interface with Shiny. It is no longer required; simply ensure that the last
+#' expression to be returned from ui.R is a user interface. This function is
+#' kept for backwards compatibility with older applications. It returns the
+#' value that is passed to it.
 #'
-#' @param ui A user-interace definition
-#' @param path The web server path to server the UI from
-#' @return Called for its side-effect of registering a UI handler
-#'
-#' @examples
-#' el <- div(HTML("I like <u>turtles</u>"))
-#' cat(as.character(el))
-#'
-#' @examples
-#' # Define UI
-#' shinyUI(pageWithSidebar(
-#'
-#'   # Application title
-#'   headerPanel("Hello Shiny!"),
-#'
-#'   # Sidebar with a slider input
-#'   sidebarPanel(
-#'     sliderInput("obs",
-#'                 "Number of observations:",
-#'                 min = 0,
-#'                 max = 1000,
-#'                 value = 500)
-#'   ),
-#'
-#'   # Show a plot of the generated distribution
-#'   mainPanel(
-#'     plotOutput("distPlot")
-#'   )
-#' ))
+#' @param ui A user interace definition
+#' @return The user interface definition, without modifications or side effects.
 #'
 #' @export
-shinyUI <- function(ui, path='/') {
+shinyUI <- function(ui) {
+  .globals$ui <- list(ui)
+  ui
+}
+
+uiHttpHandler <- function(ui, uiPattern = "^/$") {
 
   force(ui)
 
-  registerClient({
+  function(req) {
+    if (!identical(req$REQUEST_METHOD, 'GET'))
+      return(NULL)
 
-    function(req) {
-      if (!identical(req$REQUEST_METHOD, 'GET'))
-        return(NULL)
+    if (!isTRUE(grepl(uiPattern, req$PATH_INFO)))
+      return(NULL)
 
-      if (req$PATH_INFO != path)
-        return(NULL)
+    textConn <- textConnection(NULL, "w")
+    on.exit(close(textConn))
 
-      textConn <- textConnection(NULL, "w")
-      on.exit(close(textConn))
-
-      showcaseMode <- .globals$showcaseDefault
-      if (.globals$showcaseOverride) {
-        mode <- showcaseModeOfReq(req)
-        if (!is.null(mode))
-          showcaseMode <- mode
-      }
-      renderPage(ui, textConn, showcaseMode)
-      html <- paste(textConnectionValue(textConn), collapse='\n')
-      return(httpResponse(200, content=html))
+    showcaseMode <- .globals$showcaseDefault
+    if (.globals$showcaseOverride) {
+      mode <- showcaseModeOfReq(req)
+      if (!is.null(mode))
+        showcaseMode <- mode
     }
-  })
-}
+    uiValue <- if (is.function(ui)) {
+      if (length(formals(ui)) > 0)
+        ui(req)
+      else
+        ui()
+    } else {
+      ui
+    }
+    if (is.null(uiValue))
+      return(NULL)
 
+    renderPage(uiValue, textConn, showcaseMode)
+    html <- paste(textConnectionValue(textConn), collapse='\n')
+    return(httpResponse(200, content=enc2utf8(html)))
+  }
+}

R/shinywrappers.R

@@ -1,5 +1,43 @@
 globalVariables('func')
 
+#' Mark a function as a render function
+#'
+#' Should be called by implementers of \code{renderXXX} functions in order to
+#' mark their return values as Shiny render functions, and to provide a hint to
+#' Shiny regarding what UI function is most commonly used with this type of
+#' render function. This can be used in R Markdown documents to create complete
+#' output widgets out of just the render function.
+#'
+#' @param uiFunc A function that renders Shiny UI. Must take a single argument:
+#'   an output ID.
+#' @param renderFunc A function that is suitable for assigning to a Shiny output
+#'   slot.
+#' @return The \code{renderFunc} function, with annotations.
+#'
+#' @export
+markRenderFunction <- function(uiFunc, renderFunc) {
+  structure(renderFunc,
+            class      = c("shiny.render.function", "function"),
+            outputFunc = uiFunc)
+}
+
+useRenderFunction <- function(renderFunc, inline = FALSE) {
+  outputFunction <- attr(renderFunc, "outputFunc")
+  id <- createUniqueId(8, "out")
+  o <- getDefaultReactiveDomain()$output
+  if (!is.null(o))
+    o[[id]] <- renderFunc
+  if (is.logical(formals(outputFunction)[["inline"]])) {
+    outputFunction(id, inline = inline)
+  } else outputFunction(id)
+}
+
+#' @export
+#' @method as.tags shiny.render.function
+as.tags.shiny.render.function <- function(x, ..., inline = FALSE) {
+  useRenderFunction(x, inline = inline)
+}
+
 #' Plot Output
 #'
 #' Renders a reactive plot that is suitable for assigning to an \code{output}
@@ -12,16 +50,13 @@ globalVariables('func')
 #'   the output, see \code{\link{plotPNG}}.
 #'
 #' @param expr An expression that generates a plot.
-#' @param width The width of the rendered plot, in pixels; or \code{'auto'} to
-#'   use the \code{offsetWidth} of the HTML element that is bound to this plot.
-#'   You can also pass in a function that returns the width in pixels or
-#'   \code{'auto'}; in the body of the function you may reference reactive
-#'   values and functions.
-#' @param height The height of the rendered plot, in pixels; or \code{'auto'} to
-#'   use the \code{offsetHeight} of the HTML element that is bound to this plot.
-#'   You can also pass in a function that returns the width in pixels or
-#'   \code{'auto'}; in the body of the function you may reference reactive
-#'   values and functions.
+#' @param width,height The width/height of the rendered plot, in pixels; or
+#'   \code{'auto'} to use the \code{offsetWidth}/\code{offsetHeight} of the HTML
+#'   element that is bound to this plot. You can also pass in a function that
+#'   returns the width/height in pixels or \code{'auto'}; in the body of the
+#'   function you may reference reactive values and functions. When rendering an
+#'   inline plot, you must provide numeric values (in pixels) to both
+#'   \code{width} and \code{height}.
 #' @param res Resolution of resulting plot, in pixels per inch. This value is
 #'   passed to \code{\link{png}}. Note that this affects the resolution of PNG
 #'   rendering in R; it won't change the actual ppi of the browser.
@@ -54,7 +89,14 @@ renderPlot <- function(expr, width='auto', height='auto', res=72, ...,
   else
     heightWrapper <- NULL
 
-  return(function(shinysession, name, ...) {
+  # If renderPlot isn't going to adapt to the height of the div, then the
+  # div needs to adapt to the height of renderPlot. By default, plotOutput
+  # sets the height to 400px, so to make it adapt we need to override it
+  # with NULL.
+  outputFunc <- plotOutput
+  if (!identical(height, 'auto')) formals(outputFunc)['height'] <- list(NULL)
+
+  return(markRenderFunction(outputFunc, function(shinysession, name, ...) {
     if (!is.null(widthWrapper))
       width <- widthWrapper()
     if (!is.null(heightWrapper))
@@ -80,7 +122,12 @@ renderPlot <- function(expr, width='auto', height='auto', res=72, ...,
     coordmap <- NULL
     plotFunc <- function() {
       # Actually perform the plotting
-      func()
+      result <- withVisible(func())
+      if (result$visible) {
+        # Use capture.output to squelch printing to the actual console; we
+        # are only interested in plot output
+        capture.output(print(result$value))
+      }
 
       # Now capture some graphics device info before we close it
       usrCoords <- par('usr')
@@ -123,7 +170,7 @@ renderPlot <- function(expr, width='auto', height='auto', res=72, ...,
       src=shinysession$fileUrl(name, outfile, contentType='image/png'),
       width=width, height=height, coordmap=coordmap
     ))
-  })
+  }))
 }
 
 #' Image file output
@@ -218,7 +265,7 @@ renderImage <- function(expr, env=parent.frame(), quoted=FALSE,
                         deleteFile=TRUE) {
   installExprFunction(expr, "func", env, quoted)
 
-  return(function(shinysession, name, ...) {
+  return(markRenderFunction(imageOutput, function(shinysession, name, ...) {
     imageinfo <- func()
     # Should the file be deleted after being sent? If .deleteFile not set or if
     # TRUE, then delete; otherwise don't delete.
@@ -239,7 +286,7 @@ renderImage <- function(expr, env=parent.frame(), quoted=FALSE,
     # Return a list with src, and other img attributes
     c(src = shinysession$fileUrl(name, file=imageinfo$src, contentType=contentType),
       extra_attr)
-  })
+  }))
 }
 
 
@@ -269,8 +316,8 @@ renderTable <- function(expr, ..., env=parent.frame(), quoted=FALSE, func=NULL)
     installExprFunction(expr, "func", env, quoted)
   }
 
-  function() {
-    classNames <- getOption('shiny.table.class', 'data table table-bordered table-condensed')
+  markRenderFunction(tableOutput, function() {
+    classNames <- getOption('shiny.table.class') %OR% 'data table table-bordered table-condensed'
     data <- func()
 
     if (is.null(data) || identical(data, data.frame()))
@@ -285,7 +332,7 @@ renderTable <- function(expr, ..., env=parent.frame(), quoted=FALSE, func=NULL)
                                           '"',
                                           sep=''), ...)),
       collapse="\n"))
-  }
+  })
 }
 
 #' Printable Output
@@ -312,27 +359,26 @@ renderTable <- function(expr, ..., env=parent.frame(), quoted=FALSE, func=NULL)
 #' @param quoted Is \code{expr} a quoted expression (with \code{quote()})? This
 #' @param func A function that may print output and/or return a printable R
 #'   object (deprecated; use \code{expr} instead).
-#'
+#' @param width The value for \code{\link{options}('width')}.
 #' @seealso \code{\link{renderText}} for displaying the value returned from a
 #'   function, instead of the printed output.
 #'
 #' @example res/text-example.R
 #'
 #' @export
-renderPrint <- function(expr, env=parent.frame(), quoted=FALSE, func=NULL) {
+renderPrint <- function(expr, env = parent.frame(), quoted = FALSE, func = NULL,
+                        width = getOption('width')) {
   if (!is.null(func)) {
     shinyDeprecated(msg="renderPrint: argument 'func' is deprecated. Please use 'expr' instead.")
   } else {
     installExprFunction(expr, "func", env, quoted)
   }
 
-  function() {
-    return(paste(capture.output({
-      result <- withVisible(func())
-      if (result$visible)
-        print(result$value)
-    }), collapse="\n"))
-  }
+  markRenderFunction(verbatimTextOutput, function() {
+    op <- options(width = width)
+    on.exit(options(op), add = TRUE)
+    paste(capture.output(func()), collapse = "\n")
+  })
 }
 
 #' Text Output
@@ -369,10 +415,10 @@ renderText <- function(expr, env=parent.frame(), quoted=FALSE, func=NULL) {
     installExprFunction(expr, "func", env, quoted)
   }
 
-  function() {
+  markRenderFunction(textOutput, function() {
     value <- func()
     return(paste(capture.output(cat(value)), collapse="\n"))
-  }
+  })
 }
 
 #' UI Output
@@ -409,19 +455,25 @@ renderUI <- function(expr, env=parent.frame(), quoted=FALSE, func=NULL) {
     installExprFunction(expr, "func", env, quoted)
   }
 
-  function(shinysession, name, ...) {
+  markRenderFunction(uiOutput, function(shinysession, name, ...) {
     result <- func()
     if (is.null(result) || length(result) == 0)
       return(NULL)
 
     result <- takeSingletons(result, shinysession$singletons, desingleton=FALSE)$ui
     result <- surroundSingletons(result)
+    dependencies <- lapply(resolveDependencies(findDependencies(result)),
+      createWebDependency)
+    names(dependencies) <- NULL
 
     # renderTags returns a list with head, singletons, and html
-    output <- doRenderTags(result)
+    output <- list(
+      html = doRenderTags(result),
+      deps = dependencies
+    )
 
     return(output)
-  }
+  })
 }
 
 #' File Downloads
@@ -466,9 +518,9 @@ renderUI <- function(expr, env=parent.frame(), quoted=FALSE, func=NULL) {
 #'
 #' @export
 downloadHandler <- function(filename, content, contentType=NA) {
-  return(function(shinysession, name, ...) {
+  return(markRenderFunction(downloadButton, function(shinysession, name, ...) {
     shinysession$registerDownload(name, filename, contentType, content)
-  })
+  }))
 }
 
 #' Table output with the JavaScript library DataTables
@@ -482,7 +534,9 @@ downloadHandler <- function(filename, content, contentType=NA) {
 #' \code{"AsIs"} (usually returned from \code{\link{I}()}) will be evaluated in
 #' JavaScript. This is useful when the type of the option value is not supported
 #' in JSON, e.g., a JavaScript function, which can be obtained by evaluating a
-#' character string.
+#' character string. Note this only applies to the root-level elements of the
+#' options list, and the \code{I()} notation does not work for lower-level
+#' elements in the list.
 #' @param expr An expression that returns a data frame or a matrix.
 #' @param options A list of initialization options to be passed to DataTables,
 #'   or a function to return such a list.
@@ -490,35 +544,114 @@ downloadHandler <- function(filename, content, contentType=NA) {
 #'   frequent search requests).
 #' @param callback A JavaScript function to be applied to the DataTable object.
 #'   This is useful for DataTables plug-ins, which often require the DataTable
-#'   instance to be available (\url{http://datatables.net/extras/}).
+#'   instance to be available (\url{http://datatables.net/extensions/}).
+#' @param escape Whether to escape HTML entities in the table: \code{TRUE} means
+#'   to escape the whole table, and \code{FALSE} means not to escape it.
+#'   Alternatively, you can specify numeric column indices or column names to
+#'   indicate which columns to escape, e.g. \code{1:5} (the first 5 columns),
+#'   \code{c(1, 3, 4)}, or \code{c(-1, -3)} (all columns except the first and
+#'   third), or \code{c('Species', 'Sepal.Length')}.
 #' @references \url{http://datatables.net}
+#' @note This function only provides the server-side version of DataTables
+#'   (using R to process the data object on the server side). There is a
+#'   separate package \pkg{DT} (\url{https://github.com/rstudio/DT}) that allows
+#'   you to create both server-side and client-side DataTables. We may deprecate
+#'   \code{renderDataTable()} and \code{dataTableOutput()} in the future when
+#'   the \pkg{DT} package is mature enough.
 #' @export
 #' @inheritParams renderPlot
-#' @examples  # pass a callback function to DataTables using I()
-#' renderDataTable(iris,
-#'   options = list(
-#'     iDisplayLength = 5,
-#'     fnInitComplete = I("function(oSettings, json) {alert('Done.');}")
-#'   )
+#' @examples
+#' \donttest{
+#' # pass a callback function to DataTables using I()
+#' shinyApp(
+#'   ui = fluidPage(
+#'     fluidRow(
+#'       column(12,
+#'         dataTableOutput('table')
+#'       )
+#'     )
+#'   ),
+#'   server = function(input, output) {
+#'     output$table <- renderDataTable(iris,
+#'       options = list(
+#'         pageLength = 5,
+#'         initComplete = I("function(settings, json) {alert('Done.');}")
+#'       )
+#'     )
+#'   }
 #' )
+#' }
 renderDataTable <- function(expr, options = NULL, searchDelay = 500,
-                            callback = 'function(oTable) {}',
+                            callback = 'function(oTable) {}', escape = TRUE,
                             env = parent.frame(), quoted = FALSE) {
   installExprFunction(expr, "func", env, quoted)
 
-  function(shinysession, name, ...) {
-    res <- checkAsIs(if (is.function(options)) options() else options)
+  markRenderFunction(dataTableOutput, function(shinysession, name, ...) {
+    if (is.function(options)) options <- options()
+    options <- checkDT9(options)
+    res <- checkAsIs(options)
     data <- func()
     if (length(dim(data)) != 2) return() # expects a rectangular data object
-    action <- shinysession$registerDataTable(name, data)
+    if (is.data.frame(data)) data <- as.data.frame(data)
+    action <- shinysession$registerDataObj(name, data, dataTablesJSON)
+    colnames <- colnames(data)
+    # if escape is column names, turn names to numeric indices
+    if (is.character(escape)) {
+      escape <- setNames(seq_len(ncol(data)), colnames)[escape]
+      if (any(is.na(escape)))
+        stop("Some column names in the 'escape' argument not found in data")
+    }
+    colnames[escape] <- htmlEscape(colnames[escape])
+    if (!is.logical(escape)) {
+      if (!is.numeric(escape))
+        stop("'escape' must be TRUE, FALSE, or a numeric vector, or column names")
+      escape <- paste(escape, collapse = ',')
+    }
     list(
-      colnames = colnames(data), action = action, options = res$options,
+      colnames = colnames, action = action, options = res$options,
       evalOptions = if (length(res$eval)) I(res$eval), searchDelay = searchDelay,
-      callback = paste(callback, collapse = '\n')
+      callback = paste(callback, collapse = '\n'), escape = escape
     )
-  }
+  })
 }
 
+# a data frame containing the DataTables 1.9 and 1.10 names
+DT10Names <- function() {
+  rbind(
+    read.table(system.file('www/shared/datatables/upgrade1.10.txt', package = 'shiny'),
+               stringsAsFactors = FALSE),
+    c('aoColumns', 'Removed')  # looks like an omission on the upgrade guide
+  )
+}
+
+# check DataTables 1.9.x options, and give instructions for upgrading to 1.10.x
+checkDT9 <- function(options) {
+  nms <- names(options)
+  if (length(nms) == 0L) return(options)
+  DT10 <- DT10Names()
+  # e.g. the top level option name for oLanguage.sSearch should be oLanguage
+  i <- nms %in% gsub('[.].*', '', DT10[, 1])
+  if (!any(i)) return(options)  # did not see old option names, ready to go!
+  msg <- paste(
+    'shiny (>= 0.10.2) has upgraded DataTables from 1.9.4 to 1.10.2, ',
+    'and DataTables 1.10.x uses different parameter names with 1.9.x. ',
+    'Please follow the upgrade guide https://datatables.net/upgrade/1.10-convert',
+    ' to change your DataTables parameter names:\n\n',
+    paste(formatUL(nms[i]), collapse = '\n'), '\n', sep = ''
+  )
+  j <- gsub('[.].*', '', DT10[, 1]) %in% nms
+  # I cannot help you upgrade automatically in these cases, so I have to stop
+  if (any(grepl('[.]', DT10[j, 1])) || any(grepl('[.]', DT10[j, 2]))) stop(msg)
+  warning(msg)
+  nms10 <- DT10[match(nms[i], DT10[, 1]), 2]
+  if (any(nms10 == 'Removed')) stop(
+    "These parameters have been removed in DataTables 1.10.x:\n\n",
+    paste(formatUL(nms[i][nms10 == 'Removed']), collapse = '\n'),
+    "\n\n", msg
+  )
+  names(options)[i] <- nms10
+  options
+}
 
 # Deprecated functions ------------------------------------------------------
 

R/showcase.R

@@ -1,3 +1,5 @@
+#' @include globals.R
+NULL
 
 # Given the name of a license, return the appropriate link HTML for the
 # license, which may just be the name of the license if the name is
@@ -27,23 +29,30 @@ licenseLink <- function(licenseName) {
 # Returns tags containing showcase directives intended for the <HEAD> of the
 # document.
 showcaseHead <- function() {
+
+  deps  <- list(
+    htmlDependency("jqueryui", "1.10.4", c(href="shared/jqueryui/1.10.4"),
+      script = "jquery-ui.min.js"),
+    htmlDependency("showdown", "0.3.1", c(href="shared/showdown/compressed"),
+      script = "showdown.js"),
+    htmlDependency("highlight.js", "6.2", c(href="shared/highlight"),
+      script = "highlight.pack.js")
+  )
+
   mdfile <- file.path.ci(getwd(), 'Readme.md')
-  with(tags, tagList(
-    script(src="shared/highlight/highlight.pack.js"),
-    script(src="shared/showdown/compressed/showdown.js"),
-    script(src="shared/jqueryui/1.10.3/jquery-ui.min.js"),
+  html <- with(tags, tagList(
     script(src="shared/shiny-showcase.js"),
     link(rel="stylesheet", type="text/css",
          href="shared/highlight/rstudio.css"),
     link(rel="stylesheet", type="text/css",
          href="shared/shiny-showcase.css"),
-    link(rel="stylesheet", type="text/css",
-         href="shared/font-awesome/css/font-awesome.min.css"),
     if (file.exists(mdfile))
       script(type="text/markdown", id="showcase-markdown-content",
-        paste(readLines(mdfile), collapse="\n"))
+        paste(readUTF8(mdfile), collapse="\n"))
     else ""
   ))
+
+  return(attachDependencies(html, deps))
 }
 
 # Returns tags containing the application metadata (title and author) in
@@ -51,7 +60,7 @@ showcaseHead <- function() {
 appMetadata <- function(desc) {
   cols <- colnames(desc)
   if ("Title" %in% cols)
-    with(tags, h4(class="muted shiny-showcase-apptitle", desc[1,"Title"],
+    with(tags, h4(class="text-muted shiny-showcase-apptitle", desc[1,"Title"],
       if ("Author" %in% cols) small(
         br(), "by",
         if ("AuthorUrl" %in% cols)
@@ -74,12 +83,13 @@ showcaseCodeTabs <- function(codeLicense) {
   rFiles <- list.files(pattern = "\\.[rR]$")
   with(tags, div(id="showcase-code-tabs",
     a(id="showcase-code-position-toggle",
-      class="btn btn-default btn-small",
+      class="btn btn-default btn-sm",
       onclick="toggleCodePosition()",
-      i(class="fa fa-level-up", "show with app")),
+      icon("level-up"),
+      "show with app"),
     ul(class="nav nav-tabs",
        lapply(rFiles, function(rFile) {
-         li(class=if (tolower(rFile) == "server.r") "active" else "",
+         li(class=if (tolower(rFile) %in% c("app.r", "server.r")) "active" else "",
             a(href=paste("#", gsub(".", "_", rFile, fixed=TRUE),
                          "_code", sep=""),
               "data-toggle"="tab", rFile))
@@ -87,7 +97,8 @@ showcaseCodeTabs <- function(codeLicense) {
     div(class="tab-content", id="showcase-code-content",
         lapply(rFiles, function(rFile) {
           div(class=paste("tab-pane",
-                          if (tolower(rFile) == "server.r") " active" else "",
+                          if (tolower(rFile) %in% c("app.r", "server.r")) " active"
+                          else "",
                           sep=""),
               id=paste(gsub(".", "_", rFile, fixed=TRUE),
                        "_code", sep=""),
@@ -95,8 +106,7 @@ showcaseCodeTabs <- function(codeLicense) {
                   # we need to prevent the indentation of <code> ... </code>
                   HTML(format(tags$code(
                     class="language-r",
-                    paste(readLines(file.path.ci(getwd(), rFile)),
-                          collapse="\n")
+                    paste(readUTF8(file.path.ci(getwd(), rFile)), collapse="\n")
                   ), indent = FALSE))))
         })),
     codeLicense))
@@ -110,22 +120,24 @@ showcaseAppInfo <- function() {
   readmemd <- file.path.ci(getwd(), "Readme.md")
   hasReadme <- file.exists(readmemd)
   if (hasDesc) {
-    desc <- read.dcf(descfile)
+    con <- textConnection(readUTF8(descfile))
+    on.exit(close(con), add = TRUE)
+    desc <- read.dcf(con)
   }
   with(tags,
     div(class="container-fluid shiny-code-container well",
         id="showcase-well",
-        div(class="row-fluid",
+        div(class="row",
           if (hasDesc || hasReadme) {
-            div(id="showcase-app-metadata", class="span4",
+            div(id="showcase-app-metadata", class="col-sm-4",
                 if (hasDesc) appMetadata(desc) else "",
                 if (hasReadme) div(id="readme-md"))
           } else "",
           div(id="showcase-code-inline",
-              class=if (hasReadme || hasDesc) "span8" else "span10 offset1",
+              class=if (hasReadme || hasDesc) "col-sm-8" else "col-sm-10 col-sm-offset-1",
               showcaseCodeTabs(
                 if (hasDesc && "License" %in% colnames(desc)) {
-                  small(class="showcase-code-license muted",
+                  small(class="showcase-code-license text-muted",
                         "Code license: ",
                         licenseLink(desc[1,"License"]))
                 } else "")))))
@@ -138,7 +150,7 @@ showcaseBody <- function(htmlBody) {
     table(id="showcase-app-code",
           tr(td(id="showcase-app-container",
                 class="showcase-app-container-expanded",
-                HTML(htmlBody),
+                htmlBody,
              td(id="showcase-sxs-code",
                 class="showcase-sxs-code-collapsed")))),
     showcaseAppInfo()))
@@ -149,3 +161,19 @@ setShowcaseDefault <- function(showcaseDefault) {
   .globals$showcaseDefault <- showcaseDefault
   .globals$showcaseOverride <- as.logical(showcaseDefault)
 }
+
+
+# Given a UI tag/tagList, wrap it in appropriate tags for showcase mode.
+showcaseUI <- function(ui) {
+  # If top-level tag is a body, replace its children with children wrapped in
+    # showcase stuff.
+  if (inherits(ui, "shiny.tag") && ui$name == "body") {
+    ui$children <- showcaseUI(ui$children)
+    return(ui)
+  }
+
+  tagList(
+    tags$head(showcaseHead()),
+    showcaseBody(ui)
+  )
+}

R/slider.R

@@ -24,118 +24,3 @@ animationOptions <- function(interval=1000,
        playButton=playButton,
        pauseButton=pauseButton)
 }
-
-# Create a new slider control (list of slider input element and the script
-# tag used to configure it). This is a lower level control that should
-# be wrapped in an "input" construct (e.g. sliderInput in bootstrap.R)
-#
-# this is a wrapper for: https://github.com/egorkhmelev/jslider
-# (www/shared/slider contains js, css, and img dependencies)
-slider <- function(inputId, min, max, value, step = NULL, ...,
-                   round=FALSE, format='#,##0.#####', locale='us',
-                   ticks=TRUE, animate=FALSE) {
-  # validate inputId
-  inputId <- as.character(inputId)
-  if (!is.character(inputId))
-    stop("inputId not specified")
-
-  # validate numeric inputs
-  if (!is.numeric(value) || !is.numeric(min) || !is.numeric(max))
-    stop("min, max, and value must all be numeric values")
-  else if (min(value) < min)
-    stop(paste("slider initial value", value,
-               "is less than the specified minimum"))
-  else if (max(value) > max)
-    stop(paste("slider initial value", value,
-               "is greater than the specified maximum"))
-  else if (min > max)
-    stop(paste("slider maximum is greater than minimum"))
-  else if (!is.null(step)) {
-    if (!is.numeric(step))
-      stop("step is not a numeric value")
-    if (step > (max - min))
-      stop("step is greater than range")
-  }
-
-  # step
-  range <- max - min
-  if (is.null(step)) {
-    # short range or decimals means continuous decimal
-    if (range < 2 || hasDecimals(min) || hasDecimals(max))
-      step <- range / 250 # ~ one step per pixel
-    else
-      step = 1
-  }
-
-  # Default state is to not have ticks
-  if (identical(ticks, TRUE)) {
-    # Automatic ticks
-    tickCount <- (range / step) + 1
-    if (tickCount <= 26)
-      ticks <- paste(rep('|', floor(tickCount)), collapse=';')
-    else {
-      ticks <- NULL
-#       # This is a smarter auto-tick algorithm, but to be truly useful
-#       # we need jslider to be able to space ticks irregularly
-#       tickSize <- 10^(floor(log10(range/0.39)))
-#       if ((range / tickSize) == floor(range / tickSize)) {
-#         ticks <- paste(rep('|', (range / tickSize) + 1), collapse=';')
-#       }
-#       else {
-#         ticks <- NULL
-#       }
-    }
-  }
-  else if (is.numeric(ticks) && length(ticks) == 1) {
-    # Use n ticks
-    ticks <- paste(rep('|', ticks), collapse=';')
-  }
-  else if (length(ticks) > 1 && (is.numeric(ticks) || is.character(ticks))) {
-    # Explicit ticks
-    ticks <- paste(ticks, collapse=';')
-  }
-  else {
-    ticks <- NULL
-  }
-
-  # build slider
-  sliderFragment <- list(
-    singleton(tags$head(
-      tags$link(rel="stylesheet",
-                type="text/css",
-                href="shared/slider/css/jquery.slider.min.css"),
-
-      tags$script(src="shared/slider/js/jquery.slider.min.js")
-    )),
-    tags$input(
-      id=inputId, type="slider",
-      name=inputId, value=paste(value, collapse=';'), class="jslider",
-      'data-from'=min, 'data-to'=max, 'data-step'=step,
-      'data-skin'='plastic', 'data-round'=round, 'data-locale'=locale,
-      'data-format'=format, 'data-scale'=ticks,
-      'data-smooth'=FALSE
-    )
-  )
-
-  if (identical(animate, TRUE))
-    animate <- animationOptions()
-
-  if (!is.null(animate) && !identical(animate, FALSE)) {
-    if (is.null(animate$playButton))
-      animate$playButton <- 'Play'
-    if (is.null(animate$pauseButton))
-      animate$pauseButton <- 'Pause'
-
-    sliderFragment[[length(sliderFragment)+1]] <-
-      tags$div(class='slider-animate-container',
-               tags$a(href='#',
-                      class='slider-animate-button',
-                      'data-target-id'=inputId,
-                      'data-interval'=animate$interval,
-                      'data-loop'=animate$loop,
-                      tags$span(class='play', animate$playButton),
-                      tags$span(class='pause', animate$pauseButton)))
-  }
-
-  return(sliderFragment)
-}

R/stack.R

@@ -0,0 +1,70 @@
+# A Stack object backed by a list. The backing list will grow or shrink as
+# the stack changes in size.
+Stack <- R6Class(
+  'Stack',
+  portable = FALSE,
+  class = FALSE,
+  public = list(
+
+    initialize = function(init = 20L) {
+      # init is the initial size of the list. It is also used as the minimum
+      # size of the list as it shrinks.
+      private$stack <- vector("list", init)
+      private$init <- init
+    },
+
+    push = function(..., .list = NULL) {
+      args <- c(list(...), .list)
+      new_size <- count + length(args)
+
+      # Grow if needed; double in size
+      while (new_size > length(stack)) {
+        stack[length(stack) * 2] <<- list(NULL)
+      }
+      stack[count + seq_along(args)] <<- args
+      count <<- new_size
+
+      invisible(self)
+    },
+
+    pop = function() {
+      if (count == 0L)
+        return(NULL)
+
+      value <- stack[[count]]
+      stack[count] <<- list(NULL)
+      count <<- count - 1L
+
+      # Shrink list if < 1/4 of the list is used, down to a minimum size of `init`
+      len <- length(stack)
+      if (len > init && count < len/4) {
+        new_len <- max(init, ceiling(len/2))
+        stack <<- stack[seq_len(new_len)]
+      }
+
+      value
+    },
+
+    peek = function() {
+      if (count == 0L)
+        return(NULL)
+      stack[[count]]
+    },
+
+    size = function() {
+      count
+    },
+
+    # Return the entire stack as a list, where the first item in the list is the
+    # oldest item in the stack, and the last item is the most recently added.
+    as_list = function() {
+      stack[seq_len(count)]
+    }
+  ),
+
+  private = list(
+    stack = NULL,   # A list that holds the items
+    count = 0L,     # Current number of items in the stack
+    init = 20L      # Initial and minimum size of the stack
+  )
+)

R/tags.R

@@ -1,616 +0,0 @@
-
-
-htmlEscape <- local({
-  .htmlSpecials <- list(
-    `&` = '&amp;',
-    `<` = '&lt;',
-    `>` = '&gt;'
-  )
-  .htmlSpecialsPattern <- paste(names(.htmlSpecials), collapse='|')
-  .htmlSpecialsAttrib <- c(
-    .htmlSpecials,
-    `'` = '&#39;',
-    `"` = '&quot;',
-    `\r` = '&#13;',
-    `\n` = '&#10;'
-  )
-  .htmlSpecialsPatternAttrib <- paste(names(.htmlSpecialsAttrib), collapse='|')
-
-  function(text, attribute=TRUE) {
-    pattern <- if(attribute)
-      .htmlSpecialsPatternAttrib
-    else
-      .htmlSpecialsPattern
-
-    # Short circuit in the common case that there's nothing to escape
-    if (!grepl(pattern, text))
-      return(text)
-
-    specials <- if(attribute)
-      .htmlSpecialsAttrib
-    else
-      .htmlSpecials
-
-    for (chr in names(specials)) {
-      text <- gsub(chr, specials[[chr]], text, fixed=TRUE)
-    }
-
-    return(text)
-  }
-})
-
-isTag <- function(x) {
-  inherits(x, "shiny.tag")
-}
-
-#' @S3method print shiny.tag
-print.shiny.tag <- function(x, ...) {
-  print(as.character(x), ...)
-  invisible(x)
-}
-
-# indent can be numeric to indicate an initial indent level,
-# or FALSE to suppress
-#' @S3method format shiny.tag
-format.shiny.tag <- function(x, ..., singletons = character(0), indent = 0) {
-  as.character(renderTags(x, singletons = singletons, indent = indent)$html)
-}
-
-#' @S3method as.character shiny.tag
-as.character.shiny.tag <- function(x, ...) {
-  renderTags(x)$html
-}
-
-#' @S3method print shiny.tag.list
-print.shiny.tag.list <- print.shiny.tag
-
-#' @S3method format shiny.tag.list
-format.shiny.tag.list <- format.shiny.tag
-
-#' @S3method as.character shiny.tag.list
-as.character.shiny.tag.list <- as.character.shiny.tag
-
-#' @S3method print html
-print.html <- function(x, ...) {
-  cat(x, "\n")
-  invisible(x)
-}
-
-#' @S3method format html
-format.html <- function(x, ...) {
-  as.character(x)
-}
-
-normalizeText <- function(text) {
-  if (!is.null(attr(text, "html")))
-    text
-  else
-    htmlEscape(text, attribute=FALSE)
-
-}
-
-#' @rdname tag
-#' @export
-tagList <- function(...) {
-  lst <- list(...)
-  class(lst) <- c("shiny.tag.list", "list")
-  return(lst)
-}
-
-#' @rdname tag
-#' @export
-tagAppendAttributes <- function(tag, ...) {
-  tag$attribs <- c(tag$attribs, list(...))
-  tag
-}
-
-#' @rdname tag
-#' @export
-tagAppendChild <- function(tag, child) {
-  tag$children[[length(tag$children)+1]] <- child
-  tag
-}
-
-#' @rdname tag
-#' @export
-tagAppendChildren <- function(tag, ..., list = NULL) {
-  tag$children <- c(tag$children, c(list(...), list))
-  tag
-}
-
-#' @rdname tag
-#' @export
-tagSetChildren <- function(tag, ..., list = NULL) {
-  tag$children <- c(list(...), list)
-  tag
-}
-
-#' HTML Tag Object
-#'
-#' \code{tag()} creates an HTML tag definition. Note that all of the valid HTML5
-#' tags are already defined in the \code{\link{tags}} environment so these
-#' functions should only be used to generate additional tags.
-#' \code{tagAppendChild()} and \code{tagList()} are for supporting package
-#' authors who wish to create their own sets of tags; see the contents of
-#' bootstrap.R for examples.
-#' @param _tag_name HTML tag name
-#' @param varArgs List of attributes and children of the element. Named list
-#'   items become attributes, and unnamed list items become children. Valid
-#'   children are tags, single-character character vectors (which become text
-#'   nodes), and raw HTML (see \code{\link{HTML}}). You can also pass lists that
-#'   contain tags, text nodes, and HTML.
-#' @param tag A tag to append child elements to.
-#' @param child A child element to append to a parent tag.
-#' @param ...  Unnamed items that comprise this list of tags.
-#' @param list An optional list of elements. Can be used with or instead of the
-#'   \code{...} items.
-#' @return An HTML tag object that can be rendered as HTML using
-#'   \code{\link{as.character}()}.
-#' @export
-#' @examples
-#' tagList(tags$h1("Title"),
-#'         tags$h2("Header text"),
-#'         tags$p("Text here"))
-#'
-#' # Can also convert a regular list to a tagList (internal data structure isn't
-#' # exactly the same, but when rendered to HTML, the output is the same).
-#' x <- list(tags$h1("Title"),
-#'           tags$h2("Header text"),
-#'           tags$p("Text here"))
-#' tagList(x)
-tag <- function(`_tag_name`, varArgs) {
-  # Get arg names; if not a named list, use vector of empty strings
-  varArgsNames <- names(varArgs)
-  if (is.null(varArgsNames))
-    varArgsNames <- character(length=length(varArgs))
-
-  # Named arguments become attribs, dropping NULL values
-  named_idx <- nzchar(varArgsNames)
-  attribs <- dropNulls(varArgs[named_idx])
-
-  # Unnamed arguments are flattened and added as children.
-  # Use unname() to remove the names attribute from the list, which would
-  # consist of empty strings anyway.
-  children <- unname(varArgs[!named_idx])
-
-  # Return tag data structure
-  structure(
-    list(name = `_tag_name`,
-         attribs = attribs,
-         children = children),
-    class = "shiny.tag"
-  )
-}
-
-tagWrite <- function(tag, textWriter, indent=0, eol = "\n") {
-
-  if (length(tag) == 0)
-    return (NULL)
-
-  # optionally process a list of tags
-  if (!isTag(tag) && is.list(tag)) {
-    tag <- dropNullsOrEmpty(flattenTags(tag))
-    lapply(tag, tagWrite, textWriter, indent)
-    return (NULL)
-  }
-
-  nextIndent <- if (is.numeric(indent)) indent + 1 else indent
-  indent <- if (is.numeric(indent)) indent else 0
-
-  # compute indent text
-  indentText <- paste(rep(" ", indent*2), collapse="")
-
-  # Check if it's just text (may either be plain-text or HTML)
-  if (is.character(tag)) {
-    textWriter(paste(indentText, normalizeText(tag), eol, sep=""))
-    return (NULL)
-  }
-
-  # write tag name
-  textWriter(paste(indentText, "<", tag$name, sep=""))
-
-  # Convert all attribs to chars explicitly; prevents us from messing up factors
-  attribs <- lapply(tag$attribs, as.character)
-  # concatenate attributes
-  # split() is very slow, so avoid it if possible
-  if (anyDuplicated(names(attribs)))
-    attribs <- lapply(split(attribs, names(attribs)), paste, collapse = " ")
-
-  # write attributes
-  for (attrib in names(attribs)) {
-    attribValue <- attribs[[attrib]]
-    if (!is.na(attribValue)) {
-      if (is.logical(attribValue))
-        attribValue <- tolower(attribValue)
-      text <- htmlEscape(attribValue, attribute=TRUE)
-      textWriter(paste(" ", attrib,"=\"", text, "\"", sep=""))
-    }
-    else {
-      textWriter(paste(" ", attrib, sep=""))
-    }
-  }
-
-  # write any children
-  children <- dropNullsOrEmpty(flattenTags(tag$children))
-  if (length(children) > 0) {
-    textWriter(">")
-
-    # special case for a single child text node (skip newlines and indentation)
-    if ((length(children) == 1) && is.character(children[[1]]) ) {
-      textWriter(paste(normalizeText(children[[1]]), "</", tag$name, ">", eol,
-        sep=""))
-    }
-    else {
-      textWriter("\n")
-      for (child in children)
-        tagWrite(child, textWriter, nextIndent)
-      textWriter(paste(indentText, "</", tag$name, ">", eol, sep=""))
-    }
-  }
-  else {
-    # only self-close void elements
-    # (see: http://dev.w3.org/html5/spec/single-page.html#void-elements)
-    if (tag$name %in% c("area", "base", "br", "col", "command", "embed", "hr",
-                        "img", "input", "keygen", "link", "meta", "param",
-                        "source", "track", "wbr")) {
-      textWriter(paste("/>", eol, sep=""))
-    }
-    else {
-      textWriter(paste("></", tag$name, ">", eol, sep=""))
-    }
-  }
-}
-
-doRenderTags <- function(ui, indent = 0) {
-  # Render the body--the bodyHtml variable will be created
-  conn <- file(open="w+")
-  connWriter <- function(text) writeChar(text, conn, eos = NULL)
-  htmlResult <- tryCatch({
-    tagWrite(ui, connWriter, indent)
-    flush(conn)
-    readLines(conn)
-  },
-    finally = close(conn)
-  )
-  return(HTML(paste(htmlResult, collapse = "\n")))
-}
-
-renderTags <- function(ui, singletons = character(0), indent = 0) {
-  # Do singleton and head processing before rendering
-  singletonInfo <- takeSingletons(ui, singletons)
-  headInfo <- takeHeads(singletonInfo$ui)
-
-  headIndent <- if (is.numeric(indent)) indent + 1 else indent
-  headHtml <- doRenderTags(headInfo$head, indent = headIndent)
-  bodyHtml <- doRenderTags(headInfo$ui, indent = indent)
-
-  return(list(head = headHtml,
-              singletons = singletonInfo$singletons,
-              html = bodyHtml))
-}
-
-# Walk a tree of tag objects, rewriting objects according to func.
-# preorder=TRUE means preorder tree traversal, that is, an object
-# should be rewritten before its children.
-rewriteTags <- function(ui, func, preorder) {
-  if (preorder)
-    ui <- func(ui)
-
-  if (isTag(ui)) {
-    ui$children[] <- lapply(ui$children, rewriteTags, func, preorder)
-  } else if (is.list(ui)) {
-    ui[] <- lapply(ui, rewriteTags, func, preorder)
-  }
-
-  if (!preorder)
-    ui <- func(ui)
-
-  return(ui)
-}
-
-# Preprocess a tag object by changing any singleton X into
-# <!--SHINY.SINGLETON[sig]-->X'<!--/SHINY.SINGLETON[sig]-->
-# where sig is the sha1 of X, and X' is X minus the singleton
-# attribute.
-#
-# In the case of nested singletons, outer singletons are processed
-# before inner singletons (otherwise the processing of inner
-# singletons would cause the sha1 of the outer singletons to be
-# different).
-surroundSingletons <- local({
-  surroundSingleton <- function(uiObj) {
-    if (inherits(uiObj, "shiny.singleton")) {
-      sig <- digest(uiObj, "sha1")
-      class(uiObj) <- class(uiObj)[class(uiObj) != "shiny.singleton"]
-      return(tagList(
-        HTML(sprintf("<!--SHINY.SINGLETON[%s]-->", sig)),
-        uiObj,
-        HTML(sprintf("<!--/SHINY.SINGLETON[%s]-->", sig))
-      ))
-    } else {
-      uiObj
-    }
-  }
-
-  function(ui) {
-    rewriteTags(ui, surroundSingleton, TRUE)
-  }
-})
-
-# Given a tag object, apply singleton logic (allow singleton objects
-# to appear no more than once per signature) and return the processed
-# HTML objects and also the list of known singletons.
-takeSingletons <- function(ui, singletons=character(0), desingleton=TRUE) {
-  result <- rewriteTags(ui, function(uiObj) {
-    if (inherits(uiObj, "shiny.singleton")) {
-      sig <- digest(uiObj, "sha1")
-      if (sig %in% singletons)
-        return(NULL)
-      singletons <<- append(singletons, sig)
-      if (desingleton)
-        class(uiObj) <- class(uiObj)[class(uiObj) != "shiny.singleton"]
-      return(uiObj)
-    } else {
-      return(uiObj)
-    }
-  }, TRUE)
-
-  return(list(ui=result, singletons=singletons))
-}
-
-# Given a tag object, extract out any children of tags$head
-# and return them separate from the body.
-takeHeads <- function(ui) {
-  headItems <- list()
-  result <- rewriteTags(ui, function(uiObj) {
-    if (isTag(uiObj) && tolower(uiObj$name) == "head") {
-      headItems <<- append(headItems, uiObj$children)
-      return(NULL)
-    }
-    return(uiObj)
-  }, FALSE)
-
-  return(list(ui=result, head=headItems))
-}
-
-#' HTML Builder Functions
-#'
-#' Simple functions for constructing HTML documents.
-#'
-#' The \code{tags} environment contains convenience functions for all valid
-#' HTML5 tags. To generate tags that are not part of the HTML5 specification,
-#' you can use the \code{\link{tag}()} function.
-#'
-#' Dedicated functions are available for the most common HTML tags that do not
-#' conflict with common R functions.
-#'
-#' The result from these functions is a tag object, which can be converted using
-#' \code{\link{as.character}()}.
-#'
-#' @name builder
-#' @param ... Attributes and children of the element. Named arguments become
-#'   attributes, and positional arguments become children. Valid children are
-#'   tags, single-character character vectors (which become text nodes), and raw
-#'   HTML (see \code{\link{HTML}}). You can also pass lists that contain tags,
-#'   text nodes, and HTML.
-#' @export tags
-#' @examples
-#' doc <- tags$html(
-#'   tags$head(
-#'     tags$title('My first page')
-#'   ),
-#'   tags$body(
-#'     h1('My first heading'),
-#'     p('My first paragraph, with some ',
-#'       strong('bold'),
-#'       ' text.'),
-#'     div(id='myDiv', class='simpleDiv',
-#'         'Here is a div with some attributes.')
-#'   )
-#' )
-#' cat(as.character(doc))
-NULL
-
-#' @rdname builder
-#' @format NULL
-#' @docType NULL
-#' @keywords NULL
-tags <- list(
-  a = function(...) tag("a", list(...)),
-  abbr = function(...) tag("abbr", list(...)),
-  address = function(...) tag("address", list(...)),
-  area = function(...) tag("area", list(...)),
-  article = function(...) tag("article", list(...)),
-  aside = function(...) tag("aside", list(...)),
-  audio = function(...) tag("audio", list(...)),
-  b = function(...) tag("b", list(...)),
-  base = function(...) tag("base", list(...)),
-  bdi = function(...) tag("bdi", list(...)),
-  bdo = function(...) tag("bdo", list(...)),
-  blockquote = function(...) tag("blockquote", list(...)),
-  body = function(...) tag("body", list(...)),
-  br = function(...) tag("br", list(...)),
-  button = function(...) tag("button", list(...)),
-  canvas = function(...) tag("canvas", list(...)),
-  caption = function(...) tag("caption", list(...)),
-  cite = function(...) tag("cite", list(...)),
-  code = function(...) tag("code", list(...)),
-  col = function(...) tag("col", list(...)),
-  colgroup = function(...) tag("colgroup", list(...)),
-  command = function(...) tag("command", list(...)),
-  data = function(...) tag("data", list(...)),
-  datalist = function(...) tag("datalist", list(...)),
-  dd = function(...) tag("dd", list(...)),
-  del = function(...) tag("del", list(...)),
-  details = function(...) tag("details", list(...)),
-  dfn = function(...) tag("dfn", list(...)),
-  div = function(...) tag("div", list(...)),
-  dl = function(...) tag("dl", list(...)),
-  dt = function(...) tag("dt", list(...)),
-  em = function(...) tag("em", list(...)),
-  embed = function(...) tag("embed", list(...)),
-  eventsource = function(...) tag("eventsource", list(...)),
-  fieldset = function(...) tag("fieldset", list(...)),
-  figcaption = function(...) tag("figcaption", list(...)),
-  figure = function(...) tag("figure", list(...)),
-  footer = function(...) tag("footer", list(...)),
-  form = function(...) tag("form", list(...)),
-  h1 = function(...) tag("h1", list(...)),
-  h2 = function(...) tag("h2", list(...)),
-  h3 = function(...) tag("h3", list(...)),
-  h4 = function(...) tag("h4", list(...)),
-  h5 = function(...) tag("h5", list(...)),
-  h6 = function(...) tag("h6", list(...)),
-  head = function(...) tag("head", list(...)),
-  header = function(...) tag("header", list(...)),
-  hgroup = function(...) tag("hgroup", list(...)),
-  hr = function(...) tag("hr", list(...)),
-  html = function(...) tag("html", list(...)),
-  i = function(...) tag("i", list(...)),
-  iframe = function(...) tag("iframe", list(...)),
-  img = function(...) tag("img", list(...)),
-  input = function(...) tag("input", list(...)),
-  ins = function(...) tag("ins", list(...)),
-  kbd = function(...) tag("kbd", list(...)),
-  keygen = function(...) tag("keygen", list(...)),
-  label = function(...) tag("label", list(...)),
-  legend = function(...) tag("legend", list(...)),
-  li = function(...) tag("li", list(...)),
-  link = function(...) tag("link", list(...)),
-  mark = function(...) tag("mark", list(...)),
-  map = function(...) tag("map", list(...)),
-  menu = function(...) tag("menu", list(...)),
-  meta = function(...) tag("meta", list(...)),
-  meter = function(...) tag("meter", list(...)),
-  nav = function(...) tag("nav", list(...)),
-  noscript = function(...) tag("noscript", list(...)),
-  object = function(...) tag("object", list(...)),
-  ol = function(...) tag("ol", list(...)),
-  optgroup = function(...) tag("optgroup", list(...)),
-  option = function(...) tag("option", list(...)),
-  output = function(...) tag("output", list(...)),
-  p = function(...) tag("p", list(...)),
-  param = function(...) tag("param", list(...)),
-  pre = function(...) tag("pre", list(...)),
-  progress = function(...) tag("progress", list(...)),
-  q = function(...) tag("q", list(...)),
-  ruby = function(...) tag("ruby", list(...)),
-  rp = function(...) tag("rp", list(...)),
-  rt = function(...) tag("rt", list(...)),
-  s = function(...) tag("s", list(...)),
-  samp = function(...) tag("samp", list(...)),
-  script = function(...) tag("script", list(...)),
-  section = function(...) tag("section", list(...)),
-  select = function(...) tag("select", list(...)),
-  small = function(...) tag("small", list(...)),
-  source = function(...) tag("source", list(...)),
-  span = function(...) tag("span", list(...)),
-  strong = function(...) tag("strong", list(...)),
-  style = function(...) tag("style", list(...)),
-  sub = function(...) tag("sub", list(...)),
-  summary = function(...) tag("summary", list(...)),
-  sup = function(...) tag("sup", list(...)),
-  table = function(...) tag("table", list(...)),
-  tbody = function(...) tag("tbody", list(...)),
-  td = function(...) tag("td", list(...)),
-  textarea = function(...) tag("textarea", list(...)),
-  tfoot = function(...) tag("tfoot", list(...)),
-  th = function(...) tag("th", list(...)),
-  thead = function(...) tag("thead", list(...)),
-  time = function(...) tag("time", list(...)),
-  title = function(...) tag("title", list(...)),
-  tr = function(...) tag("tr", list(...)),
-  track = function(...) tag("track", list(...)),
-  u = function(...) tag("u", list(...)),
-  ul = function(...) tag("ul", list(...)),
-  var = function(...) tag("var", list(...)),
-  video = function(...) tag("video", list(...)),
-  wbr = function(...) tag("wbr", list(...))
-)
-
-#' Mark Characters as HTML
-#'
-#' Marks the given text as HTML, which means the \link{tag} functions will know
-#' not to perform HTML escaping on it.
-#'
-#' @param text The text value to mark with HTML
-#' @param ... Any additional values to be converted to character and
-#'   concatenated together
-#' @return The same value, but marked as HTML.
-#'
-#' @examples
-#' el <- div(HTML("I like <u>turtles</u>"))
-#' cat(as.character(el))
-#'
-#' @export
-HTML <- function(text, ...) {
-  htmlText <- c(text, as.character(list(...)))
-  htmlText <- paste(htmlText, collapse=" ")
-  attr(htmlText, "html") <- TRUE
-  class(htmlText) <- c("html", "character")
-  htmlText
-}
-
-#' Evaluate an expression using the \code{tags}
-#'
-#' This function makes it simpler to write HTML-generating code. Instead of
-#' needing to specify \code{tags} each time a tag function is used, as in
-#' \code{tags$div()} and \code{tags$p()}, code inside \code{withTags} is
-#' evaluated with \code{tags} searched first, so you can simply use
-#' \code{div()} and \code{p()}.
-#'
-#' If your code uses an object which happens to have the same name as an
-#' HTML tag function, such as \code{source()} or \code{summary()}, it will call
-#' the tag function. To call the intended (non-tags function), specify the
-#' namespace, as in \code{base::source()} or \code{base::summary()}.
-#'
-#' @param code A set of tags.
-#'
-#' @examples
-#' # Using tags$ each time
-#' tags$div(class = "myclass",
-#'   tags$h3("header"),
-#'   tags$p("text")
-#' )
-#'
-#' # Equivalent to above, but using withTags
-#' withTags(
-#'   div(class = "myclass",
-#'     h3("header"),
-#'     p("text")
-#'   )
-#' )
-#'
-#'
-#' @export
-withTags <- function(code) {
-  eval(substitute(code), envir = as.list(tags), enclos = parent.frame())
-}
-
-
-# Given a list of tags, lists, and other items, return a flat list, where the
-# items from the inner, nested lists are pulled to the top level, recursively.
-flattenTags <- function(x) {
-  if (isTag(x)) {
-    # For tags, wrap them into a list (which will be unwrapped by caller)
-    list(x)
-  } else if (is.list(x)) {
-    if (length(x) == 0) {
-      # Empty lists are simply returned
-      x
-    } else {
-      # For items that are lists (but not tags), recurse
-      unlist(lapply(x, flattenTags), recursive = FALSE)
-    }
-
-  } else if (is.character(x)){
-    # This will preserve attributes if x is a character with attribute,
-    # like what HTML() produces
-    list(x)
-
-  } else {
-    # For other items, coerce to character and wrap them into a list (which
-    # will be unwrapped by caller). Note that this will strip attributes.
-    list(as.character(x))
-  }
-}

R/tar.R

@@ -141,7 +141,7 @@ untar2 <- function(tarfile, files = NULL, list = FALSE, exdir = ".")
                             warning(gettextf("failed to copy %s to %s", sQuote(name2), sQuote(name)), domain = NA)
                     }
                 } else {
-                    if(.Platform$OS.type == "windows") {
+                    if(isWindows()) {
                         ## this will not work for links to dirs
                         from <- file.path(dirname(name), name2)
                         if (!file.copy(from, name))

R/timer.R

@@ -4,16 +4,17 @@ now <- function() {
   as.numeric(Sys.time()) * 1000
 }
 
-TimerCallbacks <- setRefClass(
+TimerCallbacks <- R6Class(
   'TimerCallbacks',
-  fields = list(
-    .nextId = 'integer',
+  portable = FALSE,
+  class = FALSE,
+  public = list(
+    .nextId = 0L,
     .funcs = 'Map',
-    .times = 'data.frame'
-  ),
-  methods = list(
+    .times = data.frame(),
+
     initialize = function() {
-      .nextId <<- 0L
+      .funcs <<- Map$new()
     },
     clear = function() {
       .nextId <<- 0L

R/update-input.R

@@ -54,38 +54,6 @@ updateTextInput <- function(session, inputId, label = NULL, value = NULL) {
 updateCheckboxInput <- updateTextInput
 
 
-#' Change the value of a slider input on the client
-#'
-#' @template update-input
-#' @param value The value to set for the input object.
-#'
-#' @seealso \code{\link{sliderInput}}
-#'
-#' @examples
-#' \dontrun{
-#' shinyServer(function(input, output, session) {
-#'
-#'   observe({
-#'     # We'll use the input$controller variable multiple times, so save it as x
-#'     # for convenience.
-#'     x <- input$controller
-#'
-#'     # Similar to number and text. only label and value can be set for slider
-#'     updateSliderInput(session, "inSlider",
-#'       label = paste("Slider label", x),
-#'       value = x)
-#'
-#'     # For sliders that pick out a range, pass in a vector of 2 values.
-#'     updateSliderInput(session, "inSlider2", value = c(x-1, x+1))
-#'
-#'     # An NA means to not change that value (the low or high one)
-#'     updateSliderInput(session, "inSlider3", value = c(NA, x+2))
-#'   })
-#' })
-#' }
-#' @export
-updateSliderInput <- updateTextInput
-
 #' Change the value of a date input on the client
 #'
 #' @template update-input
@@ -118,7 +86,7 @@ updateSliderInput <- updateTextInput
 #' }
 #' @export
 updateDateInput <- function(session, inputId, label = NULL, value = NULL,
-    min = NULL, max = NULL) {
+                            min = NULL, max = NULL) {
 
   # If value is a date object, convert it to a string with yyyy-mm-dd format
   # Same for min and max
@@ -163,8 +131,8 @@ updateDateInput <- function(session, inputId, label = NULL, value = NULL,
 #' }
 #' @export
 updateDateRangeInput <- function(session, inputId, label = NULL,
-    start = NULL, end = NULL, min = NULL, max = NULL) {
-
+                                 start = NULL, end = NULL, min = NULL,
+                                 max = NULL) {
   # Make sure start and end are strings, not date objects. This is for
   # consistency across different locales.
   if (inherits(start, "Date"))  start <- format(start, '%Y-%m-%d')
@@ -256,13 +224,67 @@ updateNumericInput <- function(session, inputId, label = NULL, value = NULL,
   session$sendInputMessage(inputId, message)
 }
 
+#' Change the value of a slider input on the client
+#'
+#' @template update-input
+#' @param value The value to set for the input object.
+#' @param min Minimum value.
+#' @param max Maximum value.
+#' @param step Step size.
+#'
+#' @seealso \code{\link{sliderInput}}
+#'
+#' @examples
+#' \donttest{
+#' shinyApp(
+#'   ui = fluidPage(
+#'     sidebarLayout(
+#'       sidebarPanel(
+#'         p("The first slider controls the second"),
+#'         slider2Input("control", "Controller:", min=0, max=20, value=10,
+#'                      step=1),
+#'         slider2Input("receive", "Receiver:", min=0, max=20, value=10,
+#'                      step=1)
+#'       ),
+#'       mainPanel()
+#'     )
+#'   ),
+#'   server = function(input, output, session) {
+#'     observe({
+#'       val <- input$control
+#'       # Control the value, min, max, and step.
+#'       # Step size is 2 when input value is even; 1 when value is odd.
+#'       updateSliderInput(session, "receive", value = val,
+#'         min = floor(val/2), max = val+4, step = (val+1)%%2 + 1)
+#'     })
+#'   }
+#' )
+#' }
+#' @export
+updateSliderInput <- updateNumericInput
+
+updateInputOptions <- function(session, inputId, label = NULL, choices = NULL,
+                               selected = NULL, inline = FALSE,
+                               type = 'checkbox') {
+
+  choices <- choicesWithNames(choices)
+  if (!is.null(selected))
+    selected <- validateSelected(selected, choices, inputId)
+
+  options <- if (length(choices))
+    format(tagList(
+      generateOptions(inputId, choices, selected, inline, type = type)
+    ))
+
+  message <- dropNulls(list(label = label, options = options, value = selected))
+
+  session$sendInputMessage(inputId, message)
+}
 
 #' Change the value of a checkbox group input on the client
 #'
 #' @template update-input
-#' @param choices A named vector or named list of options. For each item, the
-#'   name will be used as the label, and the value will be used as the value.
-#' @param selected A vector or list of options (values) which will be selected.
+#' @inheritParams checkboxGroupInput
 #'
 #' @seealso \code{\link{checkboxGroupInput}}
 #'
@@ -295,32 +317,16 @@ updateNumericInput <- function(session, inputId, label = NULL, value = NULL,
 #' }
 #' @export
 updateCheckboxGroupInput <- function(session, inputId, label = NULL,
-  choices = NULL, selected = NULL) {
-
-  choices <- choicesWithNames(choices)
-  if (!is.null(selected))
-    selected <- validateSelected(selected, choices, inputId)
-
-  options <- if (length(choices)) mapply(choices, names(choices),
-    SIMPLIFY = FALSE, USE.NAMES = FALSE,
-    FUN = function(value, name) {
-      list(value = value,
-           label = name)
-    }
-  )
-
-  message <- dropNulls(list(label = label, options = options, value = selected))
-
-  session$sendInputMessage(inputId, message)
+                                     choices = NULL, selected = NULL,
+                                     inline = FALSE) {
+  updateInputOptions(session, inputId, label, choices, selected, inline)
 }
 
 
 #' Change the value of a radio input on the client
 #'
 #' @template update-input
-#' @param choices A named vector or named list of options. For each item, the
-#'   name will be used as the label, and the value will be used as the value.
-#' @param selected A vector or list of options (values) which will be selected.
+#' @inheritParams radioButtons
 #'
 #' @seealso \code{\link{radioButtons}}
 #'
@@ -350,15 +356,18 @@ updateCheckboxGroupInput <- function(session, inputId, label = NULL,
 #' })
 #' }
 #' @export
-updateRadioButtons <- updateCheckboxGroupInput
+updateRadioButtons <- function(session, inputId, label = NULL, choices = NULL,
+                               selected = NULL, inline = FALSE) {
+  # you must select at least one radio button
+  if (is.null(selected) && !is.null(choices)) selected <- choices[[1]]
+  updateInputOptions(session, inputId, label, choices, selected, inline, type = 'radio')
+}
 
 
 #' Change the value of a select input on the client
 #'
 #' @template update-input
-#' @param choices A named vector or named list of options. For each item, the
-#'   name will be used as the label, and the value will be used as the value.
-#' @param selected A vector or list of options (values) which will be selected.
+#' @inheritParams selectInput
 #'
 #' @seealso \code{\link{selectInput}}
 #'
@@ -391,4 +400,89 @@ updateRadioButtons <- updateCheckboxGroupInput
 #' })
 #' }
 #' @export
-updateSelectInput <- updateCheckboxGroupInput
+updateSelectInput <- function(session, inputId, label = NULL, choices = NULL,
+                              selected = NULL) {
+  choices <- choicesWithNames(choices)
+  if (!is.null(selected))
+    selected <- validateSelected(selected, choices, inputId)
+  options <- if (length(choices)) selectOptions(choices, selected)
+  message <- dropNulls(list(label = label, options = options, value = selected))
+  session$sendInputMessage(inputId, message)
+}
+
+#' @rdname updateSelectInput
+#' @inheritParams selectizeInput
+#' @param server whether to store \code{choices} on the server side, and load
+#'   the select options dynamically on searching, instead of writing all
+#'   \code{choices} into the page at once (i.e., only use the client-side
+#'   version of \pkg{selectize.js})
+#' @export
+updateSelectizeInput <- function(session, inputId, label = NULL, choices = NULL,
+                                 selected = NULL, options = list(),
+                                 server = FALSE) {
+  if (length(options)) {
+    res <- checkAsIs(options)
+    cfg <- tags$script(
+      type = 'application/json',
+      `data-for` = inputId,
+      `data-eval` = if (length(res$eval)) HTML(toJSON(res$eval)),
+      HTML(toJSON(res$options))
+    )
+    session$sendInputMessage(inputId, list(config = as.character(cfg)))
+  }
+  if (!server) {
+    return(updateSelectInput(session, inputId, label, choices, selected))
+  }
+  # in the server mode, the choices are not available before we type, so we
+  # cannot really pre-select any options, but here we insert the `selected`
+  # options into selectize forcibly
+  value <- unname(selected)
+  selected <- choicesWithNames(selected)
+  message <- dropNulls(list(
+    label = label,
+    value = value,
+    selected = if (length(selected)) {
+      columnToRowData(list(label = names(selected), value = selected))
+    },
+    url = session$registerDataObj(inputId, choices, selectizeJSON)
+  ))
+  session$sendInputMessage(inputId, message)
+}
+
+selectizeJSON <- function(data, req) {
+  query <- parseQueryString(req$QUERY_STRING)
+  # extract the query variables, conjunction (and/or), search string, maximum options
+  var <- unlist(fromJSON(query$field, asText = TRUE))
+  cjn <- if (query$conju == 'and') all else any
+  # all keywords in lower-case, for case-insensitive matching
+  key <- unique(strsplit(tolower(query$query), '\\s+')[[1]])
+  if (identical(key, '')) key <- character(0)
+  mop <- query$maxop
+
+  # convert a single vector to a data frame so it returns {label: , value: }
+  # later in JSON; other objects return arbitrary JSON {x: , y: , foo: , ...}
+  data <- if (is.atomic(data)) {
+    data.frame(label = names(choicesWithNames(data)), value = data,
+               stringsAsFactors = FALSE)
+  } else as.data.frame(data, stringsAsFactors = FALSE)
+
+  # start searching for keywords in all specified columns
+  idx <- logical(nrow(data))
+  if (length(key)) for (v in var) {
+    matches <- do.call(
+      cbind,
+      lapply(key, function(k) {
+        grepl(k, tolower(as.character(data[[v]])), fixed = TRUE)
+      })
+    )
+    # merge column matches using OR, and match multiple keywords in one column
+    # using the conjunction setting (AND or OR)
+    idx <- idx | apply(matches, 1, cjn)
+  }
+  # only return the first n rows (n = maximum options in configuration)
+  idx <- head(which(idx), mop)
+  data <- data[idx, ]
+
+  res <- toJSON(columnToRowData(data))
+  httpResponse(200, 'application/json', enc2utf8(res))
+}

R/utils.R

@@ -1,3 +1,7 @@
+#' @include globals.R
+#' @include map.R
+NULL
+
 #' Make a random number generator repeatable
 #'
 #' Given a function that generates random data, returns a wrapped version of
@@ -40,8 +44,91 @@ repeatable <- function(rngfunc, seed = runif(1, 0, .Machine$integer.max)) {
   }
 }
 
+# Temporarily set x in env to value, evaluate expr, and
+# then restore x to its original state
+withTemporary <- function(env, x, value, expr, unset = FALSE) {
+
+  if (exists(x, envir = env, inherits = FALSE)) {
+    oldValue <- get(x, envir = env, inherits = FALSE)
+    on.exit(
+      assign(x, oldValue, envir = env, inherits = FALSE),
+      add = TRUE)
+  } else {
+    on.exit(
+      rm(list = x, envir = env, inherits = FALSE),
+      add = TRUE
+    )
+  }
+
+  if (!missing(value) && !isTRUE(unset))
+    assign(x, value, envir = env, inherits = FALSE)
+  else {
+    if (exists(x, envir = env, inherits = FALSE))
+      rm(list = x, envir = env, inherits = FALSE)
+  }
+  force(expr)
+}
+
+.globals$ownSeed <- NULL
+# Evaluate an expression using Shiny's own private stream of
+# randomness (not affected by set.seed).
+withPrivateSeed <- function(expr) {
+  withTemporary(.GlobalEnv, ".Random.seed",
+    .globals$ownSeed, unset=is.null(.globals$ownSeed), {
+      tryCatch({
+        expr
+      }, finally = {
+        .globals$ownSeed <- getExists('.Random.seed', 'numeric', globalenv())
+      })
+    }
+  )
+}
+
+# a homemade version of set.seed(NULL) for backward compatibility with R 2.15.x
+reinitializeSeed <- if (getRversion() >= '3.0.0') {
+  function() set.seed(NULL)
+} else function() {
+  if (exists('.Random.seed', globalenv()))
+    rm(list = '.Random.seed', pos = globalenv())
+  stats::runif(1)  # generate any random numbers so R can reinitialize the seed
+}
+
+# Version of runif that runs with private seed
+p_runif <- function(...) {
+  withPrivateSeed(runif(...))
+}
+
+# Version of sample that runs with private seed
+p_sample <- function(...) {
+  withPrivateSeed(sample(...))
+}
+
+# Return a random integral value in the range [min, max).
+# If only one argument is passed, then min=0 and max=argument.
+randomInt <- function(min, max) {
+  if (missing(max)) {
+    max <- min
+    min <- 0
+  }
+  if (min < 0 || max <= min)
+    stop("Invalid min/max values")
+
+  min + sample(max-min, 1)-1
+}
+
+p_randomInt <- function(...) {
+  withPrivateSeed(randomInt(...))
+}
+
+isWholeNum <- function(x, tol = .Machine$double.eps^0.5) {
+  abs(x - round(x)) < tol
+}
+
 `%OR%` <- function(x, y) {
-  ifelse(is.null(x) || is.na(x), y, x)
+  if (is.null(x) || isTRUE(is.na(x)))
+    y
+  else
+    x
 }
 
 `%AND%` <- function(x, y) {
@@ -68,6 +155,127 @@ dropNullsOrEmpty <- function(x) {
   x[!vapply(x, nullOrEmpty, FUN.VALUE=logical(1))]
 }
 
+# Combine dir and (file)name into a file path. If a file already exists with a
+# name differing only by case, then use it instead.
+file.path.ci <- function(...) {
+  result <- find.file.ci(...)
+  if (!is.null(result))
+    return(result)
+
+  # If not found, return the file path that was given to us.
+  return(file.path(...))
+}
+
+# Does a particular file exist? Case-insensitive for filename, case-sensitive
+# for path (on platforms with case-sensitive file system).
+file.exists.ci <- function(...) {
+  !is.null(find.file.ci(...))
+}
+
+# Look for a file, case-insensitive for filename, case-sensitive for path (on
+# platforms with case-sensitive filesystem). If found, return the path to the
+# file, with the correct case. If not found, return NULL.
+find.file.ci <- function(...) {
+  default <- file.path(...)
+  if (length(default) > 1)
+    stop("find.file.ci can only check for one file at a time.")
+  if (file.exists(default))
+    return(default)
+
+  dir <- dirname(default)
+  name <- basename(default)
+
+  # If we got here, then we'll check for a directory with the exact case, and a
+  # name with any case.
+  all_files <- list.files(dir, all.files=TRUE, full.names=TRUE,
+                          include.dirs=TRUE)
+  match_idx <- tolower(name) == tolower(basename(all_files))
+  matches <- all_files[match_idx]
+  if (length(matches) == 0)
+    return(NULL)
+
+  return(matches[1])
+}
+
+# Attempt to join a path and relative path, and turn the result into a
+# (normalized) absolute path. The result will only be returned if it is an
+# existing file/directory and is a descendant of dir.
+#
+# Example:
+# resolve("/Users/jcheng", "shiny")  # "/Users/jcheng/shiny"
+# resolve("/Users/jcheng", "./shiny")  # "/Users/jcheng/shiny"
+# resolve("/Users/jcheng", "shiny/../shiny/")  # "/Users/jcheng/shiny"
+# resolve("/Users/jcheng", ".")  # NULL
+# resolve("/Users/jcheng", "..")  # NULL
+# resolve("/Users/jcheng", "shiny/..")  # NULL
+resolve <- function(dir, relpath) {
+  abs.path <- file.path(dir, relpath)
+  if (!file.exists(abs.path))
+    return(NULL)
+  abs.path <- normalizePath(abs.path, winslash='/', mustWork=TRUE)
+  dir <- normalizePath(dir, winslash='/', mustWork=TRUE)
+  # trim the possible trailing slash under Windows (#306)
+  if (isWindows()) dir <- sub('/$', '', dir)
+  if (nchar(abs.path) <= nchar(dir) + 1)
+    return(NULL)
+  if (substr(abs.path, 1, nchar(dir)) != dir ||
+      substr(abs.path, nchar(dir)+1, nchar(dir)+1) != '/') {
+    return(NULL)
+  }
+  return(abs.path)
+}
+
+isWindows <- function() .Platform$OS.type == 'windows'
+
+# This is a wrapper for download.file and has the same interface.
+# The only difference is that, if the protocol is https, it changes the
+# download settings, depending on platform.
+download <- function(url, ...) {
+  # First, check protocol. If http or https, check platform:
+  if (grepl('^https?://', url)) {
+
+    # If Windows, call setInternet2, then use download.file with defaults.
+    if (isWindows()) {
+      # If we directly use setInternet2, R CMD CHECK gives a Note on Mac/Linux
+      mySI2 <- `::`(utils, 'setInternet2')
+      # Store initial settings
+      internet2_start <- mySI2(NA)
+      on.exit(mySI2(internet2_start))
+
+      # Needed for https
+      mySI2(TRUE)
+      download.file(url, ...)
+
+    } else {
+      # If non-Windows, check for curl/wget/lynx, then call download.file with
+      # appropriate method.
+
+      if (nzchar(Sys.which("wget")[1])) {
+        method <- "wget"
+      } else if (nzchar(Sys.which("curl")[1])) {
+        method <- "curl"
+
+        # curl needs to add a -L option to follow redirects.
+        # Save the original options and restore when we exit.
+        orig_extra_options <- getOption("download.file.extra")
+        on.exit(options(download.file.extra = orig_extra_options))
+
+        options(download.file.extra = paste("-L", orig_extra_options))
+
+      } else if (nzchar(Sys.which("lynx")[1])) {
+        method <- "lynx"
+      } else {
+        stop("no download method found")
+      }
+
+      download.file(url, method = method, ...)
+    }
+
+  } else {
+    download.file(url, ...)
+  }
+}
+
 knownContentTypes <- Map$new()
 knownContentTypes$mset(
   html='text/html; charset=UTF-8',
@@ -241,6 +449,12 @@ installExprFunction <- function(expr, name, eval.env = parent.frame(2),
 #' Returns a named character vector of key-value pairs.
 #'
 #' @param str The query string. It can have a leading \code{"?"} or not.
+#' @param nested Whether to parse the query string of as a nested list when it
+#'   contains pairs of square brackets \code{[]}. For example, the query
+#'   \samp{a[i1][j1]=x&b[i1][j1]=y&b[i2][j1]=z} will be parsed as \code{list(a =
+#'   list(i1 = list(j1 = 'x')), b = list(i1 = list(j1 = 'y'), i2 = list(j1 =
+#'   'z')))} when \code{nested = TRUE}, and \code{list(`a[i1][j1]` = 'x',
+#'   `b[i1][j1]` = 'y', `b[i2][j1]` = 'z')} when \code{nested = FALSE}.
 #' @export
 #' @examples
 #' parseQueryString("?foo=1&bar=b%20a%20r")
@@ -266,7 +480,7 @@ installExprFunction <- function(expr, name, eval.env = parent.frame(2),
 #' })
 #' }
 #'
-parseQueryString <- function(str) {
+parseQueryString <- function(str, nested = FALSE) {
   if (is.null(str) || nchar(str) == 0)
     return(list())
 
@@ -286,10 +500,29 @@ parseQueryString <- function(str) {
   keys   <- gsub('+', ' ', keys,   fixed = TRUE)
   values <- gsub('+', ' ', values, fixed = TRUE)
 
-  keys   <- vapply(keys,   function(x) URLdecode(x), FUN.VALUE = character(1))
-  values <- vapply(values, function(x) URLdecode(x), FUN.VALUE = character(1))
+  keys   <- URLdecode(keys)
+  values <- URLdecode(values)
 
-  setNames(as.list(values), keys)
+  res <- setNames(as.list(values), keys)
+  if (!nested) return(res)
+
+  # Make a nested list from a query of the form ?a[1][1]=x11&a[1][2]=x12&...
+  for (i in grep('\\[.+\\]', keys)) {
+    k <- strsplit(keys[i], '[][]')[[1L]]  # split by [ or ]
+    res <- assignNestedList(res, k[k != ''], values[i])
+    res[[keys[i]]] <- NULL    # remove res[['a[1][1]']]
+  }
+  res
+}
+
+# Assign value to the bottom element of the list x using recursive indices idx
+assignNestedList <- function(x = list(), idx, value) {
+  for (i in seq_along(idx)) {
+    sub <- idx[seq_len(i)]
+    if (is.null(x[[sub]])) x[[sub]] <- list()
+  }
+  x[[idx]] <- value
+  x
 }
 
 # decide what to do in case of errors; it is customizable using the shiny.error
@@ -308,18 +541,27 @@ shinyCallingHandlers <- function(expr) {
 #' @param new Name of replacement function.
 #' @param msg Message to print. If used, this will override the default message.
 #' @param old Name of deprecated function.
+#' @param version The last version of Shiny before the item was deprecated.
+#' @keywords internal
 shinyDeprecated <- function(new=NULL, msg=NULL,
-                            old=as.character(sys.call(sys.parent()))[1L]) {
+                            old=as.character(sys.call(sys.parent()))[1L],
+                            version = NULL) {
 
-  if (getOption("shiny.deprecation.messages", default=TRUE) == FALSE)
+  if (getOption("shiny.deprecation.messages") %OR% TRUE == FALSE)
     return(invisible())
 
   if (is.null(msg)) {
     msg <- paste(old, "is deprecated.")
-    if (!is.null(new))
+    if (!is.null(new)) {
       msg <- paste(msg, "Please use", new, "instead.",
         "To disable this message, run options(shiny.deprecation.messages=FALSE)")
+    }
   }
+
+  if (!is.null(version)) {
+    msg <- paste0(msg, " (Last used in version ", version, ")")
+  }
+
   # Similar to .Deprecated(), but print a message instead of warning
   message(msg)
 }
@@ -346,15 +588,17 @@ registerDebugHook <- function(name, where, label) {
   }
 }
 
-Callbacks <- setRefClass(
+Callbacks <- R6Class(
   'Callbacks',
-  fields = list(
-    .nextId = 'integer',
-    .callbacks = 'Map'
-  ),
-  methods = list(
+  portable = FALSE,
+  class = FALSE,
+  public = list(
+    .nextId = integer(0),
+    .callbacks = 'Map',
+
     initialize = function() {
       .nextId <<- as.integer(.Machine$integer.max)
+      .callbacks <<- Map$new()
     },
     register = function(callback) {
       id <- as.character(.nextId)
@@ -380,75 +624,101 @@ Callbacks <- setRefClass(
 )
 
 # convert a data frame to JSON as required by DataTables request
-dataTablesJSON <- function(data, query) {
+dataTablesJSON <- function(data, req) {
   n <- nrow(data)
-  with(parseQueryString(query), {
-    useRegex <- function(j, envir = parent.frame()) {
-      # FIXME: bRegex is not part of the query string yet (DataTables 1.9.4)
-      return(TRUE)
-      ex <- getExists(
-        if (missing(j)) 'bRegex' else sprintf('bRegex_%s', j), 'character', envir
-      )
-      is.null(ex) || ex == 'true'
-    }
-    # global searching
-    i <- seq_len(n)
-    sSearch <- getExists('sSearch', 'character')
-    if (length(sSearch) && nzchar(sSearch)) {
-      bRegex <- useRegex()
-      i0 <- apply(data, 2, function(x) grep(sSearch, as.character(x), fixed = !bRegex))
-      i <- intersect(i, unique(unlist(i0)))
-    }
-    # search by columns
-    if (length(i)) for (j in seq_len(as.integer(iColumns)) - 1) {
-      if (is.null(s <- getExists(sprintf('bSearchable_%d', j), 'character')) ||
-            s == "0" || s == "false") next  # the j-th column is not searchable
-      if (is.null(k <- getExists(sprintf('sSearch_%d', j), 'character'))) next
-      if (nzchar(k)) {
-        dj <- data[, j + 1]
-        r  <- commaToRange(k)
-        ij <- if (length(r) == 2 && is.numeric(dj)) {
-          which(dj >= r[1] & dj <= r[2])
-        } else {
-          grep(k, as.character(dj), fixed = !useRegex(j))
-        }
-        i <- intersect(ij, i)
-      }
-      if (length(i) == 0) break
-    }
-    if (length(i) != n) data <- data[i, , drop = FALSE]
-    # sorting
-    oList <- list()
-    for (j in seq_len(as.integer(iSortingCols)) - 1) {
-      if (is.null(k <- getExists(sprintf('iSortCol_%d', j), 'character'))) break
-      desc <- getExists(sprintf('sSortDir_%d', j), 'character')
-      if (is.character(desc)) {
-        col <- data[, as.integer(k) + 1]
-        oList[[length(oList) + 1]] <- (if (desc == 'asc') identity else `-`)(
-          if (is.numeric(col)) col else xtfrm(col)
-        )
-      }
-    }
-    if (length(oList)) {
-      i <- do.call(order, oList)
-      data <- data[i, , drop = FALSE]
-    }
-    # paging
-    if (iDisplayLength != '-1') {
-      i <- seq(as.integer(iDisplayStart) + 1L, length.out = as.integer(iDisplayLength))
-      i <- i[i <= nrow(data)]
-      fdata <- data[i, , drop = FALSE]  # filtered data
-    } else fdata <- data
-    fdata <- unname(as.matrix(fdata))
-    if (nrow(fdata) == 0) fdata <- list()
+  # DataTables requests were sent via POST
+  params <- URLdecode(rawToChar(req$rook.input$read()))
+  q <- parseQueryString(params, nested = TRUE)
+  ci <- q$search[['caseInsensitive']] == 'true'
 
-    toJSON(list(
-      sEcho = as.integer(sEcho),
-      iTotalRecords = n,
-      iTotalDisplayRecords = nrow(data),
-      aaData = fdata
-    ))
-  })
+  # global searching
+  i <- seq_len(n)
+  if (q$search[['value']] != '') {
+    i0 <- apply(data, 2, function(x) {
+      grep2(q$search[['value']], as.character(x),
+            fixed = q$search[['regex']] == 'false', ignore.case = ci)
+    })
+    i <- intersect(i, unique(unlist(i0)))
+  }
+
+  # search by columns
+  if (length(i)) for (j in names(q$columns)) {
+    col <- q$columns[[j]]
+    # if the j-th column is not searchable or the search string is "", skip it
+    if (col[['searchable']] != 'true') next
+    if ((k <- col[['search']][['value']]) == '') next
+    j <- as.integer(j)
+    dj <- data[, j + 1]
+    r  <- commaToRange(k)
+    ij <- if (length(r) == 2 && is.numeric(dj)) {
+      which(dj >= r[1] & dj <= r[2])
+    } else {
+      grep2(k, as.character(dj), fixed = col[['search']][['regex']] == 'false',
+            ignore.case = ci)
+    }
+    i <- intersect(ij, i)
+    if (length(i) == 0) break
+  }
+  if (length(i) != n) data <- data[i, , drop = FALSE]
+
+  # sorting
+  oList <- list()
+  for (ord in q$order) {
+    k <- ord[['column']]  # which column to sort
+    d <- ord[['dir']]     # direction asc/desc
+    if (q$columns[[k]][['orderable']] != 'true') next
+    col <- data[, as.integer(k) + 1]
+    oList[[length(oList) + 1]] <- (if (d == 'asc') identity else `-`)(
+      if (is.numeric(col)) col else xtfrm(col)
+    )
+  }
+  if (length(oList)) {
+    i <- do.call(order, oList)
+    data <- data[i, , drop = FALSE]
+  }
+  # paging
+  if (q$length != '-1') {
+    i <- seq(as.integer(q$start) + 1L, length.out = as.integer(q$length))
+    i <- i[i <= nrow(data)]
+    fdata <- data[i, , drop = FALSE]  # filtered data
+  } else fdata <- data
+
+  fdata <- unname(as.matrix(fdata))
+  if (is.character(fdata) && q$escape != 'false') {
+    if (q$escape == 'true') fdata <- htmlEscape(fdata) else {
+      k <- as.integer(strsplit(q$escape, ',')[[1]])
+      # use seq_len() in case escape = negative indices, e.g. c(-1, -5)
+      for (j in seq_len(ncol(fdata))[k]) fdata[, j] <- htmlEscape(fdata[, j])
+    }
+  }
+  # WAT: toJSON(list(x = matrix(nrow = 0, ncol = 1))) => {"x": } (#299)
+  if (nrow(fdata) == 0) fdata <- list()
+  # WAT: toJSON(list(x = matrix(1:2))) => {x: [ [1], [2] ]}, however,
+  # toJSON(list(x = matrix(1))) => {x: [ 1 ]} (loss of dimension, #429)
+  if (length(fdata) && all(dim(fdata) == 1)) fdata <- list(list(fdata[1, 1]))
+
+  res <- toJSON(list(
+    draw = as.integer(q$draw),
+    recordsTotal = n,
+    recordsFiltered = nrow(data),
+    data = fdata
+  ))
+  httpResponse(200, 'application/json', enc2utf8(res))
+}
+
+# when both ignore.case and fixed are TRUE, we use grep(ignore.case = FALSE,
+# fixed = TRUE) to do lower-case matching of pattern on x
+grep2 <- function(pattern, x, ignore.case = FALSE, fixed = FALSE, ...) {
+  if (fixed && ignore.case) {
+    pattern <- tolower(pattern)
+    x <- tolower(x)
+    ignore.case <- FALSE
+  }
+  # when the user types in the search box, the regular expression may not be
+  # complete before it is sent to the server, in which case we do not search
+  if (!fixed && inherits(try(grep(pattern, ''), silent = TRUE), 'try-error'))
+    return(seq_along(x))
+  grep(pattern, x, ignore.case = ignore.case, fixed = fixed, ...)
 }
 
 getExists <- function(x, mode, envir = parent.frame()) {
@@ -473,6 +743,7 @@ commaToRange <- function(string) {
 checkAsIs <- function(options) {
   evalOptions <- if (length(options)) {
     nms <- names(options)
+    if (length(nms) == 0L || any(nms == '')) stop("'options' must be a named list")
     i <- unlist(lapply(options, function(x) {
       is.character(x) && inherits(x, 'AsIs')
     }))
@@ -488,6 +759,8 @@ checkAsIs <- function(options) {
 srcrefFromShinyCall <- function(expr) {
   srcrefs <- attr(expr, "srcref")
   num_exprs <- length(srcrefs)
+  if (num_exprs < 1)
+    return(NULL)
   c(srcrefs[[1]][1], srcrefs[[1]][2],
     srcrefs[[num_exprs]][3], srcrefs[[num_exprs]][4],
     srcrefs[[1]][5], srcrefs[[num_exprs]][6])
@@ -530,3 +803,276 @@ formatNoSci <- function(x) {
   if (is.null(x)) return(NULL)
   format(x, scientific = FALSE, digits = 15)
 }
+
+# Returns a function that calls the given func and caches the result for
+# subsequent calls, unless the given file's mtime changes.
+cachedFuncWithFile <- function(dir, file, func, case.sensitive = FALSE) {
+  dir <- normalizePath(dir, mustWork=TRUE)
+  mtime <- NA
+  value <- NULL
+  function(...) {
+    fname <- if (case.sensitive)
+      file.path(dir, file)
+    else
+      file.path.ci(dir, file)
+
+    now <- file.info(fname)$mtime
+    if (!identical(mtime, now)) {
+      value <<- func(fname, ...)
+      mtime <<- now
+    }
+    value
+  }
+}
+
+# turn column-based data to row-based data (mainly for JSON), e.g. data.frame(x
+# = 1:10, y = 10:1) ==> list(list(x = 1, y = 10), list(x = 2, y = 9), ...)
+columnToRowData <- function(data) {
+  do.call(
+    mapply, c(
+      list(FUN = function(...) list(...), SIMPLIFY = FALSE, USE.NAMES = FALSE),
+      as.list(data)
+    )
+  )
+}
+
+#' Validate input values and other conditions
+#'
+#' For an output rendering function (e.g. \code{\link{renderPlot}()}), you may
+#' need to check that certain input values are available and valid before you
+#' can render the output. \code{validate} gives you a convenient mechanism for
+#' doing so.
+#'
+#' The \code{validate} function takes any number of (unnamed) arguments, each of
+#' which represents a condition to test. If any of the conditions represent
+#' failure, then a special type of error is signaled which stops execution. If
+#' this error is not handled by application-specific code, it is displayed to
+#' the user by Shiny.
+#'
+#' An easy way to provide arguments to \code{validate} is to use the \code{need}
+#' function, which takes an expression and a string; if the expression is
+#' considered a failure, then the string will be used as the error message. The
+#' \code{need} function considers its expression to be a failure if it is any of
+#' the following:
+#'
+#' \itemize{
+#'   \item{\code{FALSE}}
+#'   \item{\code{NULL}}
+#'   \item{\code{""}}
+#'   \item{An empty atomic vector}
+#'   \item{An atomic vector that contains only missing values}
+#'   \item{A logical vector that contains all \code{FALSE} or missing values}
+#'   \item{An object of class \code{"try-error"}}
+#'   \item{A value that represents an unclicked \code{\link{actionButton}}}
+#' }
+#'
+#' If any of these values happen to be valid, you can explicitly turn them to
+#' logical values. For example, if you allow \code{NA} but not \code{NULL}, you
+#' can use the condition \code{!is.null(input$foo)}, because \code{!is.null(NA)
+#' == TRUE}.
+#'
+#' If you need validation logic that differs significantly from \code{need}, you
+#' can create other validation test functions. A passing test should return
+#' \code{NULL}. A failing test should return an error message as a
+#' single-element character vector, or if the failure should happen silently,
+#' \code{FALSE}.
+#'
+#' Because validation failure is signaled as an error, you can use
+#' \code{validate} in reactive expressions, and validation failures will
+#' automatically propagate to outputs that use the reactive expression. In
+#' other words, if reactive expression \code{a} needs \code{input$x}, and two
+#' outputs use \code{a} (and thus depend indirectly on \code{input$x}), it's
+#' not necessary for the outputs to validate \code{input$x} explicitly, as long
+#' as \code{a} does validate it.
+#'
+#' @param ... A list of tests. Each test should equal \code{NULL} for success,
+#'   \code{FALSE} for silent failure, or a string for failure with an error
+#'   message.
+#' @param errorClass A CSS class to apply. The actual CSS string will have
+#'   \code{shiny-output-error-} prepended to this value.
+#' @export
+#' @examples
+#' # in ui.R
+#' fluidPage(
+#'   checkboxGroupInput('in1', 'Check some letters', choices = head(LETTERS)),
+#'   selectizeInput('in2', 'Select a state', choices = state.name),
+#'   plotOutput('plot')
+#' )
+#'
+#' # in server.R
+#' function(input, output) {
+#'   output$plot <- renderPlot({
+#'     validate(
+#'       need(input$in1, 'Check at least one letter!'),
+#'       need(input$in2 != '', 'Please choose a state.')
+#'     )
+#'     plot(1:10, main = paste(c(input$in1, input$in2), collapse = ', '))
+#'   })
+#' }
+validate <- function(..., errorClass = character(0)) {
+  results <- sapply(list(...), function(x) {
+    # Detect NULL or NA
+    if (is.null(x))
+      return(NA_character_)
+    else if (identical(x, FALSE))
+      return("")
+    else if (is.character(x))
+      return(paste(as.character(x), collapse = "\n"))
+    else
+      stop("Unexpected validation result: ", as.character(x))
+  })
+
+  results <- na.omit(results)
+  if (length(results) == 0)
+    return(invisible())
+
+  # There may be empty strings remaining; these are message-less failures that
+  # started as FALSE
+  results <- results[nzchar(results)]
+
+  stopWithCondition(c("validation", errorClass), paste(results, collapse="\n"))
+}
+
+#' @param expr An expression to test. The condition will pass if the expression
+#'   meets the conditions spelled out in Details.
+#' @param message A message to convey to the user if the validation condition is
+#'   not met. If no message is provided, one will be created using \code{label}.
+#'   To fail with no message, use \code{FALSE} for the message.
+#' @param label A human-readable name for the field that may be missing. This
+#'   parameter is not needed if \code{message} is provided, but must be provided
+#'   otherwise.
+#' @export
+#' @rdname validate
+need <- function(expr, message = paste(label, "must be provided"), label) {
+
+  force(message) # Fail fast on message/label both being missing
+
+  if (!isTruthy(expr))
+    return(message)
+  else
+    return(invisible(NULL))
+}
+
+isTruthy <- function(x) {
+  if (inherits(x, 'try-error'))
+    return(FALSE)
+
+  if (!is.atomic(x))
+    return(TRUE)
+
+  if (is.null(x))
+    return(FALSE)
+  if (length(x) == 0)
+    return(FALSE)
+  if (all(is.na(x)))
+    return(FALSE)
+  if (is.character(x) && !any(nzchar(na.omit(x))))
+    return(FALSE)
+  if (inherits(x, 'shinyActionButtonValue') && x == 0)
+    return(FALSE)
+  if (is.logical(x) && !any(na.omit(x)))
+    return(FALSE)
+
+  return(TRUE)
+}
+
+# add class(es) to the error condition, which will be used as names of CSS
+# classes, e.g. shiny-output-error shiny-output-error-validation
+stopWithCondition <- function(class, message) {
+  cond <- structure(
+    list(message = message),
+    class = c(class, 'shiny.silent.error', 'error', 'condition')
+  )
+  stop(cond)
+}
+
+#' Collect information about the Shiny Server environment
+#'
+#' This function returns the information about the current Shiny Server, such as
+#' its version, and whether it is the open source edition or professional
+#' edition. If the app is not served through the Shiny Server, this function
+#' just returns \code{list(shinyServer = FALSE)}.
+#'
+#' This function will only return meaningful data when using Shiny Server
+#' version 1.2.2 or later.
+#' @export
+#' @return A list of the Shiny Server information.
+serverInfo <- function() {
+  .globals$serverInfo
+}
+.globals$serverInfo <- list(shinyServer = FALSE)
+
+setServerInfo <- function(...) {
+  infoOld <- serverInfo()
+  infoNew <- list(...)
+  infoOld[names(infoNew)] <- infoNew
+  .globals$serverInfo <- infoOld
+}
+
+# see if the file can be read as UTF-8 on Windows, and converted from UTF-8 to
+# native encoding; if the conversion fails, it will produce NA's in the results
+checkEncoding <- function(file) {
+  # skip *nix because its locale is normally UTF-8 based (e.g. en_US.UTF-8), and
+  # *nix users have to make a conscious effort to save a file with an encoding
+  # that is not UTF-8; if they choose to do so, we cannot do much about it
+  # except sitting back and seeing them punished after they choose to escape a
+  # world of consistency (falling back to getOption('encoding') will not help
+  # because native.enc is also normally UTF-8 based on *nix)
+  if (!isWindows()) return('UTF-8')
+  # an empty file?
+  size <- file.info(file)[, 'size']
+  if (size == 0) return('UTF-8')
+
+  x <- readLines(file, encoding = 'UTF-8', warn = FALSE)
+  # if conversion is successful and there are no embedded nul's, use UTF-8
+  if (!any(is.na(iconv(x, 'UTF-8'))) &&
+        !any(readBin(file, 'raw', size) == as.raw(0))) return('UTF-8')
+
+  # check if there is a BOM character: this is also skipped on *nix, because R
+  # on *nix simply ignores this meaningless character if present, but it hurts
+  # on Windows
+  if (identical(charToRaw(readChar(file, 3L, TRUE)), charToRaw('\UFEFF'))) {
+    warning('You should not include the Byte Order Mark (BOM) in ', file, '. ',
+            'Please re-save it in UTF-8 without BOM. See ',
+            'http://shiny.rstudio.com/articles/unicode.html for more info.')
+    if (getRversion() < '3.0.0')
+      stop('R does not support UTF-8-BOM before 3.0.0. Please upgrade R.')
+    return('UTF-8-BOM')
+  }
+
+  enc <- getOption('encoding')
+  msg <- c(sprintf('The file "%s" is not encoded in UTF-8. ', file),
+           'Please convert its encoding to UTF-8 ',
+           '(e.g. use the menu `File -> Save with Encoding` in RStudio). ',
+           'See http://shiny.rstudio.com/articles/unicode.html for more info.')
+  if (enc == 'UTF-8') stop(msg)
+  # if you publish the app to ShinyApps.io, you will be in trouble
+  warning(c(msg, ' Falling back to the encoding "', enc, '".'))
+
+  enc
+}
+
+# try to read a file using UTF-8 (fall back to getOption('encoding') in case of
+# failure, which defaults to native.enc, i.e. native encoding)
+readUTF8 <- function(file) {
+  enc <- checkEncoding(file)
+  # readLines() does not support UTF-8-BOM directly; has to go through file()
+  if (enc == 'UTF-8-BOM') {
+    file <- base::file(file, encoding = enc)
+    on.exit(close(file), add = TRUE)
+  }
+  x <- readLines(file, encoding = enc, warn = FALSE)
+  enc2native(x)
+}
+
+# similarly, try to source() a file with UTF-8
+sourceUTF8 <- function(file, ...) {
+  source(file, ..., keep.source = TRUE, encoding = checkEncoding(file))
+}
+
+
+URLdecode <- decodeURIComponent
+URLencode <- function(value, reserved = FALSE) {
+  value <- enc2utf8(value)
+  if (reserved) encodeURIComponent(value) else encodeURI(value)
+}

README.md

@@ -1,10 +1,10 @@
 # Shiny
 
-[![Build Status](https://travis-ci.org/rstudio/shiny.png)](https://travis-ci.org/rstudio/shiny)
+[![Build Status](https://travis-ci.org/rstudio/shiny.svg?branch=master)](https://travis-ci.org/rstudio/shiny)
 
 Shiny is a new package from RStudio that makes it incredibly easy to build interactive web applications with R.
 
-For an introduction and examples, visit the [Shiny homepage](http://www.rstudio.com/shiny/).
+For an introduction and examples, visit the [Shiny Dev Center](http://shiny.rstudio.com/).
 
 ## Features
 
@@ -32,15 +32,31 @@ To install the latest development builds directly from GitHub, run this instead:
 ```r
 if (!require("devtools"))
   install.packages("devtools")
-devtools::install_github("shiny", "rstudio")
+devtools::install_github("rstudio/shiny")
 ```
 
 ## Getting Started
 
-To learn more we highly recommend you check out the [Shiny Tutorial](http://rstudio.github.com/shiny/tutorial). The tutorial explains the framework in-depth, walks you through building a simple application, and includes extensive annotated examples.
+To learn more we highly recommend you check out the [Shiny Tutorial](http://shiny.rstudio.com/tutorial/). The tutorial explains the framework in-depth, walks you through building a simple application, and includes extensive annotated examples.
 
 We hope you enjoy using Shiny. If you have general questions about using Shiny, please use the Shiny [mailing list](https://groups.google.com/forum/#!forum/shiny-discuss). For bug reports, please use the [issue tracker](https://github.com/rstudio/shiny/issues).
 
+## Bootstrap 3 migration
+
+Shiny versions 0.10.2.2 and below used the Bootstrap 2 web framework. After 0.10.2.2, Shiny switched to Bootstrap 3. For most users, the upgrade should be seamless. However, if you have have customized your HTML-generating code to use features specific to Bootstrap 2, you may need to update your code to work with Bootstrap 3.
+
+If you do not wish to update your code at this time, you can use the [shinybootstrap2](https://github.com/rstudio/shinybootstrap2) package for backward compatibility.
+
+If you prefer to install an older version of Shiny, you can do it using the devtools package:
+
+```R
+devtools::install_version("shiny", version = "0.10.2.2")
+```
+
+## Development notes
+
+The Javascript code in Shiny is minified using tools that run on Node.js. See the tools/ directory for more information.
+
 ## License
 
 The shiny package is licensed under the GPLv3. See these files in the inst directory for additional details:

cran-comments.md

@@ -0,0 +1,10 @@
+This is a resubmission of shiny 0.11 with updated license information.
+
+As per our communication, all copyright holders listed in the sources are listed as "cph" in Authors@R. Where the copyright holders are natural persons, they are also listed as "ctb". Where the copyright holders are not natural persons, I have taken the following approach:
+
+* jQuery: The copyright holders are "jQuery Foundation and other contributors". I have listed "jQuery Foundation" as "cph", and "jQuery contributors" as "ctb" and "cph". The jQuery contributors are listed in inst/www/shared/jquery-AUTHORS.txt, and this file is mentioned in the comment.
+* jQuery UI: The jQuery UI library is also created by the jQuery foundation, but is a separate project. The copyright holders are "jQuery Foundation and other contributors". I have listed "jQuery Foundation" as "cph" (for jQuery as well as jQuery UI), and "jQuery contributors" as "ctb" and "cph". The jQuery UI contributors are listed in inst/www/shared/jqueryui/1.10.4/AUTHORS.txt, and this file is mentioned in the comment.
+* Bootstrap: The copyright holder is Twitter, Inc. I have listed "Twitter, Inc", as "cph", and "Bootstrap contributors" as "ctb". The Bootstrap project page also names two creators of the project, and so I have listed them as "ctb". (According to Bootstrap's commit history, there are hundreds of others who have contributed to Bootstrap, so I have not listed them each individually.)
+* es5-shim: The copyright holders are "Kristopher Michael Kowal and contributors". I have listed "Kristopher Michael Kowal" as "ctb" and "cph", and "es5-shim contributors" as "ctb" and "cph". (According to es5-shim's CONTRIBUTORS.md file, there are dozens of others who have contributed to es5-shim, so I have not listed them each individually.)
+* DataTables: The copyright holder is "SpryMedia Limited". Because no natural person is listed in the documentation for DataTables, I have "SpryMedia Limited" as "ctb" and "cph".
+* R: An implentation of tar() is taken from the R sources. I've listed the "R Core Team" as "ctb" and "cph".

inst/COPYING

@@ -1,678 +0,0 @@
-The shiny package is licensed to you under the GPLv3, the terms of 
-which are included below. The markdown pacakge includes other open 
-source software whose license terms can be found in the file NOTICE.
-
-                    GNU GENERAL PUBLIC LICENSE
-                       Version 3, 29 June 2007
-
- Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
- Everyone is permitted to copy and distribute verbatim copies
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-  14. Revised Versions of this License.
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-  17. Interpretation of Sections 15 and 16.
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-copy of the Program in return for a fee.
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-    This is free software, and you are welcome to redistribute it
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-The hypothetical commands `show w' and `show c' should show the appropriate
-parts of the General Public License.  Of course, your program's commands
-might be different; for a GUI interface, you would use an "about box".
-
-  You should also get your employer (if you work as a programmer) or school,
-if any, to sign a "copyright disclaimer" for the program, if necessary.
-For more information on this, and how to apply and follow the GNU GPL, see
-<http://www.gnu.org/licenses/>.
-
-  The GNU General Public License does not permit incorporating your program
-into proprietary programs.  If your program is a subroutine library, you
-may consider it more useful to permit linking proprietary applications with
-the library.  If this is what you want to do, use the GNU Lesser General
-Public License instead of this License.  But first, please read
-<http://www.gnu.org/philosophy/why-not-lgpl.html>.

inst/NOTICE

@@ -1,325 +0,0 @@
-The shiny package inludes other open source software components. The following
-is a list of these components (full copies of the license agreements used by
-these components are included below):
-
-- jQuery
-- Bootstrap
-- bootstrap-datepicker, from https://github.com/eternicode/bootstrap-datepicker
-- selectize, from https://github.com/brianreavis/selectize.js
-- es5-shim
-- jslider
-- DataTables
-
-jQuery License
-----------------------------------------------------------------------
-
-Copyright (c) 2012 jQuery Foundation and other contributors,
-http://jquery.com/
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Software"), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
-LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
-OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
-WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-
-
-Bootstrap, bootstrap-datepicker, and selectize License
-----------------------------------------------------------------------
-
-                                 Apache License
-                           Version 2.0, January 2004
-                        http://www.apache.org/licenses/
-
-   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
-
-   1. Definitions.
-
-      "License" shall mean the terms and conditions for use, reproduction,
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-      of this License, Derivative Works shall not include works that remain
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-      "Contributor" shall mean Licensor and any individual or Legal Entity
-      on behalf of whom a Contribution has been received by Licensor and
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-
-   2. Grant of Copyright License. Subject to the terms and conditions of
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-      (d) If the Work includes a "NOTICE" text file as part of its
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-      the conditions stated in this License.
-
-   5. Submission of Contributions. Unless You explicitly state otherwise,
-      any Contribution intentionally submitted for inclusion in the Work
-      by You to the Licensor shall be under the terms and conditions of
-      this License, without any additional terms or conditions.
-      Notwithstanding the above, nothing herein shall supersede or modify
-      the terms of any separate license agreement you may have executed
-      with Licensor regarding such Contributions.
-
-   6. Trademarks. This License does not grant permission to use the trade
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-   7. Disclaimer of Warranty. Unless required by applicable law or
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-   8. Limitation of Liability. In no event and under no legal theory,
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-   limitations under the License.
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-
-es5-shim License
-----------------------------------------------------------------------
-
-The MIT License (MIT)
-
-Copyright (C) 2009-2014 Kristopher Michael Kowal and contributors
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
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-The above copyright notice and this permission notice shall be included in
-all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-THE SOFTWARE.
-
-
-jslider License
-----------------------------------------------------------------------
-
-The MIT License (MIT)
-Copyright (c) 2012 Egor Khmelev
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
-
-
-DataTables License
-----------------------------------------------------------------------
-
-Copyright (c) 2008-2010, Allan Jardine
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
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-      this list of conditions and the following disclaimer.
-
-    * Redistributions in binary form must reproduce the above copyright
-      notice, this list of conditions and the following disclaimer in the
-      documentation and/or other materials provided with the distribution.
-
-    * Neither the name of Allan Jardine nor SpryMedia UK may be used to
-      endorse or promote products derived from this software without specific
-      prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS "AS IS" AND ANY EXPRESS
-OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
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-NO EVENT SHALL THE COPYRIGHT HOLDERS BE LIABLE FOR ANY DIRECT, INDIRECT,
-INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
-LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
-OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
-LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
-NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
-EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

inst/staticdocs/index.r

@@ -0,0 +1,169 @@
+sd_section("UI Layout",
+  "Functions for laying out the user interface for your application.",
+  c(
+    "absolutePanel",
+    "bootstrapPage",
+    "column",
+    "conditionalPanel",
+    "fixedPage",
+    "fluidPage",
+    "headerPanel",
+    "helpText",
+    "icon",
+    "mainPanel",
+    "navbarPage",
+    "navlistPanel",
+    "pageWithSidebar",
+    "sidebarLayout",
+    "sidebarPanel",
+    "tabPanel",
+    "tabsetPanel",
+    "titlePanel",
+    "inputPanel",
+    "flowLayout",
+    "splitLayout",
+    "verticalLayout",
+    "wellPanel",
+    "withMathJax"
+  )
+)
+sd_section("UI Inputs",
+  "Functions for creating user interface elements that prompt the user for input values or interaction.",
+  c(
+    "actionButton",
+    "checkboxGroupInput",
+    "checkboxInput",
+    "dateInput",
+    "dateRangeInput",
+    "fileInput",
+    "numericInput",
+    "radioButtons",
+    "selectInput",
+    "sliderInput",
+    "submitButton",
+    "textInput",
+    "passwordInput",
+    "updateCheckboxGroupInput",
+    "updateCheckboxInput",
+    "updateDateInput",
+    "updateDateRangeInput",
+    "updateNumericInput",
+    "updateRadioButtons",
+    "updateSelectInput",
+    "updateSliderInput",
+    "updateTabsetPanel",
+    "updateTextInput"
+  )
+)
+sd_section("UI Outputs",
+  "Functions for creating user interface elements that, in conjunction with rendering functions, display different kinds of output from your application.",
+  c(
+    "htmlOutput",
+    "imageOutput",
+    "plotOutput",
+    "outputOptions",
+    "tableOutput",
+    "textOutput",
+    "verbatimTextOutput",
+    "downloadButton",
+    "Progress",
+    "withProgress"
+  )
+)
+sd_section("Interface builder functions",
+  "A sub-library for writing HTML using R functions. These functions form the foundation on which the higher level user interface functions are built, and can also be used in your Shiny UI to provide custom HTML, CSS, and JavaScript.",
+  c(
+    "builder",
+    "HTML",
+    "include",
+    "singleton",
+    "tag",
+    "validateCssUnit",
+    "withTags"
+  )
+)
+sd_section("Rendering functions",
+  "Functions that you use in your application's server side code, assigning them to outputs that appear in your user interface.",
+  c(
+    "renderPlot",
+    "renderText",
+    "renderPrint",
+    "renderDataTable",
+    "renderImage",
+    "renderTable",
+    "renderUI",
+    "downloadHandler",
+    "reactivePlot",
+    "reactivePrint",
+    "reactiveTable",
+    "reactiveText",
+    "reactiveUI"
+  )
+)
+sd_section("Reactive constructs",
+  "A sub-library that provides reactive programming facilities for R.",
+  c(
+    "invalidateLater",
+    "is.reactivevalues",
+    "isolate",
+    "makeReactiveBinding",
+    "observe",
+    "observeEvent",
+    "reactive",
+    "reactiveFileReader",
+    "reactivePoll",
+    "reactiveTimer",
+    "reactiveValues",
+    "reactiveValuesToList",
+    "domains",
+    "showReactLog"
+  )
+)
+sd_section("Boilerplate",
+  "Functions that are required boilerplate in ui.R and server.R.",
+  c(
+    "shinyUI",
+    "shinyServer"
+  )
+)
+sd_section("Running",
+  "Functions that are used to run or stop Shiny applications.",
+  c(
+    "runApp",
+    "runExample",
+    "runUrl",
+    "stopApp"
+  )
+)
+sd_section("Extending Shiny",
+  "Functions that are intended to be called by third-party packages that extend Shiny.",
+  c(
+    "createWebDependency",
+    "addResourcePath",
+    "registerInputHandler",
+    "removeInputHandler",
+    "markRenderFunction"
+  )
+)
+sd_section("Utility functions",
+  "Miscellaneous utilities that may be useful to advanced users or when extending Shiny.",
+  c(
+    "validate",
+    "session",
+    "exprToFunction",
+    "installExprFunction",
+    "parseQueryString",
+    "plotPNG",
+    "repeatable",
+    "shinyDeprecated",
+    "serverInfo",
+    "shiny-options"
+  )
+)
+sd_section("Embedding",
+  "Functions that are intended for third-party packages that embed Shiny applications.",
+  c(
+    "shinyApp",
+    "maskReactiveContext"
+  )
+)

inst/tests-js/SpecRunner.html

@@ -1,95 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
-  "http://www.w3.org/TR/html4/loose.dtd">
-<html>
-<head>
-  <title>Jasmine Spec Runner</title>
-
-  <link rel="shortcut icon" type="image/png" href="lib/jasmine-1.3.1/jasmine_favicon.png">
-  <link rel="stylesheet" type="text/css" href="lib/jasmine-1.3.1/jasmine.css">
-  <script type="text/javascript" src="lib/jasmine-1.3.1/jasmine.js"></script>
-  <script type="text/javascript" src="lib/jasmine-1.3.1/jasmine-html.js"></script>
-
-  <!-- include source files here... -->
-
-  <!-- All of these includes are copied out of the HTML file generated by
-  shinyUI() -->
-  <script src="../www/shared/jquery.js" type="text/javascript"></script>
-  <script src="../www/shared/shiny.js" type="text/javascript"></script>
-  <link rel="stylesheet" type="text/css" href="../www/shared/shiny.css"/>
-  <link rel="stylesheet" type="text/css" href="../www/shared/slider/css/jquery.slider.min.css"/>
-  <script src="../www/shared/slider/js/jquery.slider.min.js"></script>
-  <link rel="stylesheet" type="text/css" href="../www/shared/bootstrap/css/bootstrap.min.css"/>
-  <script src="../www/shared/bootstrap/js/bootstrap.min.js"></script>
-  <!-- <meta name="viewport" content="width=device-width, initial-scale=1.0"/> -->
-  <link rel="stylesheet" type="text/css" href="../www/shared/bootstrap/css/bootstrap-responsive.min.css"/>
-
-  <script src="../www/shared/datepicker/js/bootstrap-datepicker.min.js"></script>
-  <link rel="stylesheet" type="text/css" href="../www/shared/datepicker/css/datepicker.css"/>
-
-  <script src="../www/shared/bootstrap-daterangepicker/date.js"></script>
-  <script src="../www/shared/bootstrap-daterangepicker/daterangepicker.js"></script>
-  <link rel="stylesheet" type="text/css" href="../www/shared/bootstrap-daterangepicker/daterangepicker.css"/>
-
-  <!-- include spec files here... -->
- <!-- <script type="text/javascript" src="spec/SpecHelper.js"></script>
-  <script type="text/javascript" src="spec/PlayerSpec.js"></script>
- -->
-  <script type="text/javascript" src="spec/inputBindingSpec.js"></script>
-
-  <script type="text/javascript">
-    (function() {
-      var jasmineEnv = jasmine.getEnv();
-      jasmineEnv.updateInterval = 1000;
-
-      var htmlReporter = new jasmine.HtmlReporter();
-
-      jasmineEnv.addReporter(htmlReporter);
-
-      jasmineEnv.specFilter = function(spec) {
-        return htmlReporter.specFilter(spec);
-      };
-
-      // var currentWindowOnload = window.onload;
-
-      // window.onload = function() {
-      //   if (currentWindowOnload) {
-      //     currentWindowOnload();
-      //   }
-      //   execJasmine();
-      // };
-
-      // Add a slight delay before running tests, so that Shiny has time to
-      // do setup stuff.
-      $(document).ready(function() {
-        setTimeout(function() {
-            execJasmine();
-          },
-          50
-        )
-      });
-
-
-      function execJasmine() {
-        jasmineEnv.execute();
-      }
-
-    })();
-
-
-    // Clear the Shiny disconnected gray screen shortly after loading
-    $(document).ready(function() {
-      setTimeout(function() {
-          $('body').removeClass('disconnected');
-        },
-        100
-      )
-    });
-
-  </script>
-
-</head>
-
-<body>
-
-</body>
-</html>

inst/tests-js/fixtures/textInputBinding.html

@@ -1,2 +0,0 @@
-<label>Text input:</label>
-<input id="in_text" type="text" value="starting value"/>

inst/tests-js/lib/jasmine-1.3.1/MIT.LICENSE

@@ -1,20 +0,0 @@
-Copyright (c) 2008-2011 Pivotal Labs
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Software"), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
-LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
-OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
-WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

inst/tests-js/lib/jasmine-1.3.1/jasmine-html.js

@@ -1,681 +0,0 @@
-jasmine.HtmlReporterHelpers = {};
-
-jasmine.HtmlReporterHelpers.createDom = function(type, attrs, childrenVarArgs) {
-  var el = document.createElement(type);
-
-  for (var i = 2; i < arguments.length; i++) {
-    var child = arguments[i];
-
-    if (typeof child === 'string') {
-      el.appendChild(document.createTextNode(child));
-    } else {
-      if (child) {
-        el.appendChild(child);
-      }
-    }
-  }
-
-  for (var attr in attrs) {
-    if (attr == "className") {
-      el[attr] = attrs[attr];
-    } else {
-      el.setAttribute(attr, attrs[attr]);
-    }
-  }
-
-  return el;
-};
-
-jasmine.HtmlReporterHelpers.getSpecStatus = function(child) {
-  var results = child.results();
-  var status = results.passed() ? 'passed' : 'failed';
-  if (results.skipped) {
-    status = 'skipped';
-  }
-
-  return status;
-};
-
-jasmine.HtmlReporterHelpers.appendToSummary = function(child, childElement) {
-  var parentDiv = this.dom.summary;
-  var parentSuite = (typeof child.parentSuite == 'undefined') ? 'suite' : 'parentSuite';
-  var parent = child[parentSuite];
-
-  if (parent) {
-    if (typeof this.views.suites[parent.id] == 'undefined') {
-      this.views.suites[parent.id] = new jasmine.HtmlReporter.SuiteView(parent, this.dom, this.views);
-    }
-    parentDiv = this.views.suites[parent.id].element;
-  }
-
-  parentDiv.appendChild(childElement);
-};
-
-
-jasmine.HtmlReporterHelpers.addHelpers = function(ctor) {
-  for(var fn in jasmine.HtmlReporterHelpers) {
-    ctor.prototype[fn] = jasmine.HtmlReporterHelpers[fn];
-  }
-};
-
-jasmine.HtmlReporter = function(_doc) {
-  var self = this;
-  var doc = _doc || window.document;
-
-  var reporterView;
-
-  var dom = {};
-
-  // Jasmine Reporter Public Interface
-  self.logRunningSpecs = false;
-
-  self.reportRunnerStarting = function(runner) {
-    var specs = runner.specs() || [];
-
-    if (specs.length == 0) {
-      return;
-    }
-
-    createReporterDom(runner.env.versionString());
-    doc.body.appendChild(dom.reporter);
-    setExceptionHandling();
-
-    reporterView = new jasmine.HtmlReporter.ReporterView(dom);
-    reporterView.addSpecs(specs, self.specFilter);
-  };
-
-  self.reportRunnerResults = function(runner) {
-    reporterView && reporterView.complete();
-  };
-
-  self.reportSuiteResults = function(suite) {
-    reporterView.suiteComplete(suite);
-  };
-
-  self.reportSpecStarting = function(spec) {
-    if (self.logRunningSpecs) {
-      self.log('>> Jasmine Running ' + spec.suite.description + ' ' + spec.description + '...');
-    }
-  };
-
-  self.reportSpecResults = function(spec) {
-    reporterView.specComplete(spec);
-  };
-
-  self.log = function() {
-    var console = jasmine.getGlobal().console;
-    if (console && console.log) {
-      if (console.log.apply) {
-        console.log.apply(console, arguments);
-      } else {
-        console.log(arguments); // ie fix: console.log.apply doesn't exist on ie
-      }
-    }
-  };
-
-  self.specFilter = function(spec) {
-    if (!focusedSpecName()) {
-      return true;
-    }
-
-    return spec.getFullName().indexOf(focusedSpecName()) === 0;
-  };
-
-  return self;
-
-  function focusedSpecName() {
-    var specName;
-
-    (function memoizeFocusedSpec() {
-      if (specName) {
-        return;
-      }
-
-      var paramMap = [];
-      var params = jasmine.HtmlReporter.parameters(doc);
-
-      for (var i = 0; i < params.length; i++) {
-        var p = params[i].split('=');
-        paramMap[decodeURIComponent(p[0])] = decodeURIComponent(p[1]);
-      }
-
-      specName = paramMap.spec;
-    })();
-
-    return specName;
-  }
-
-  function createReporterDom(version) {
-    dom.reporter = self.createDom('div', { id: 'HTMLReporter', className: 'jasmine_reporter' },
-      dom.banner = self.createDom('div', { className: 'banner' },
-        self.createDom('span', { className: 'title' }, "Jasmine "),
-        self.createDom('span', { className: 'version' }, version)),
-
-      dom.symbolSummary = self.createDom('ul', {className: 'symbolSummary'}),
-      dom.alert = self.createDom('div', {className: 'alert'},
-        self.createDom('span', { className: 'exceptions' },
-          self.createDom('label', { className: 'label', 'for': 'no_try_catch' }, 'No try/catch'),
-          self.createDom('input', { id: 'no_try_catch', type: 'checkbox' }))),
-      dom.results = self.createDom('div', {className: 'results'},
-        dom.summary = self.createDom('div', { className: 'summary' }),
-        dom.details = self.createDom('div', { id: 'details' }))
-    );
-  }
-
-  function noTryCatch() {
-    return window.location.search.match(/catch=false/);
-  }
-
-  function searchWithCatch() {
-    var params = jasmine.HtmlReporter.parameters(window.document);
-    var removed = false;
-    var i = 0;
-
-    while (!removed && i < params.length) {
-      if (params[i].match(/catch=/)) {
-        params.splice(i, 1);
-        removed = true;
-      }
-      i++;
-    }
-    if (jasmine.CATCH_EXCEPTIONS) {
-      params.push("catch=false");
-    }
-
-    return params.join("&");
-  }
-
-  function setExceptionHandling() {
-    var chxCatch = document.getElementById('no_try_catch');
-
-    if (noTryCatch()) {
-      chxCatch.setAttribute('checked', true);
-      jasmine.CATCH_EXCEPTIONS = false;
-    }
-    chxCatch.onclick = function() {
-      window.location.search = searchWithCatch();
-    };
-  }
-};
-jasmine.HtmlReporter.parameters = function(doc) {
-  var paramStr = doc.location.search.substring(1);
-  var params = [];
-
-  if (paramStr.length > 0) {
-    params = paramStr.split('&');
-  }
-  return params;
-}
-jasmine.HtmlReporter.sectionLink = function(sectionName) {
-  var link = '?';
-  var params = [];
-
-  if (sectionName) {
-    params.push('spec=' + encodeURIComponent(sectionName));
-  }
-  if (!jasmine.CATCH_EXCEPTIONS) {
-    params.push("catch=false");
-  }
-  if (params.length > 0) {
-    link += params.join("&");
-  }
-
-  return link;
-};
-jasmine.HtmlReporterHelpers.addHelpers(jasmine.HtmlReporter);
-jasmine.HtmlReporter.ReporterView = function(dom) {
-  this.startedAt = new Date();
-  this.runningSpecCount = 0;
-  this.completeSpecCount = 0;
-  this.passedCount = 0;
-  this.failedCount = 0;
-  this.skippedCount = 0;
-
-  this.createResultsMenu = function() {
-    this.resultsMenu = this.createDom('span', {className: 'resultsMenu bar'},
-      this.summaryMenuItem = this.createDom('a', {className: 'summaryMenuItem', href: "#"}, '0 specs'),
-      ' | ',
-      this.detailsMenuItem = this.createDom('a', {className: 'detailsMenuItem', href: "#"}, '0 failing'));
-
-    this.summaryMenuItem.onclick = function() {
-      dom.reporter.className = dom.reporter.className.replace(/ showDetails/g, '');
-    };
-
-    this.detailsMenuItem.onclick = function() {
-      showDetails();
-    };
-  };
-
-  this.addSpecs = function(specs, specFilter) {
-    this.totalSpecCount = specs.length;
-
-    this.views = {
-      specs: {},
-      suites: {}
-    };
-
-    for (var i = 0; i < specs.length; i++) {
-      var spec = specs[i];
-      this.views.specs[spec.id] = new jasmine.HtmlReporter.SpecView(spec, dom, this.views);
-      if (specFilter(spec)) {
-        this.runningSpecCount++;
-      }
-    }
-  };
-
-  this.specComplete = function(spec) {
-    this.completeSpecCount++;
-
-    if (isUndefined(this.views.specs[spec.id])) {
-      this.views.specs[spec.id] = new jasmine.HtmlReporter.SpecView(spec, dom);
-    }
-
-    var specView = this.views.specs[spec.id];
-
-    switch (specView.status()) {
-      case 'passed':
-        this.passedCount++;
-        break;
-
-      case 'failed':
-        this.failedCount++;
-        break;
-
-      case 'skipped':
-        this.skippedCount++;
-        break;
-    }
-
-    specView.refresh();
-    this.refresh();
-  };
-
-  this.suiteComplete = function(suite) {
-    var suiteView = this.views.suites[suite.id];
-    if (isUndefined(suiteView)) {
-      return;
-    }
-    suiteView.refresh();
-  };
-
-  this.refresh = function() {
-
-    if (isUndefined(this.resultsMenu)) {
-      this.createResultsMenu();
-    }
-
-    // currently running UI
-    if (isUndefined(this.runningAlert)) {
-      this.runningAlert = this.createDom('a', { href: jasmine.HtmlReporter.sectionLink(), className: "runningAlert bar" });
-      dom.alert.appendChild(this.runningAlert);
-    }
-    this.runningAlert.innerHTML = "Running " + this.completeSpecCount + " of " + specPluralizedFor(this.totalSpecCount);
-
-    // skipped specs UI
-    if (isUndefined(this.skippedAlert)) {
-      this.skippedAlert = this.createDom('a', { href: jasmine.HtmlReporter.sectionLink(), className: "skippedAlert bar" });
-    }
-
-    this.skippedAlert.innerHTML = "Skipping " + this.skippedCount + " of " + specPluralizedFor(this.totalSpecCount) + " - run all";
-
-    if (this.skippedCount === 1 && isDefined(dom.alert)) {
-      dom.alert.appendChild(this.skippedAlert);
-    }
-
-    // passing specs UI
-    if (isUndefined(this.passedAlert)) {
-      this.passedAlert = this.createDom('span', { href: jasmine.HtmlReporter.sectionLink(), className: "passingAlert bar" });
-    }
-    this.passedAlert.innerHTML = "Passing " + specPluralizedFor(this.passedCount);
-
-    // failing specs UI
-    if (isUndefined(this.failedAlert)) {
-      this.failedAlert = this.createDom('span', {href: "?", className: "failingAlert bar"});
-    }
-    this.failedAlert.innerHTML = "Failing " + specPluralizedFor(this.failedCount);
-
-    if (this.failedCount === 1 && isDefined(dom.alert)) {
-      dom.alert.appendChild(this.failedAlert);
-      dom.alert.appendChild(this.resultsMenu);
-    }
-
-    // summary info
-    this.summaryMenuItem.innerHTML = "" + specPluralizedFor(this.runningSpecCount);
-    this.detailsMenuItem.innerHTML = "" + this.failedCount + " failing";
-  };
-
-  this.complete = function() {
-    dom.alert.removeChild(this.runningAlert);
-
-    this.skippedAlert.innerHTML = "Ran " + this.runningSpecCount + " of " + specPluralizedFor(this.totalSpecCount) + " - run all";
-
-    if (this.failedCount === 0) {
-      dom.alert.appendChild(this.createDom('span', {className: 'passingAlert bar'}, "Passing " + specPluralizedFor(this.passedCount)));
-    } else {
-      showDetails();
-    }
-
-    dom.banner.appendChild(this.createDom('span', {className: 'duration'}, "finished in " + ((new Date().getTime() - this.startedAt.getTime()) / 1000) + "s"));
-  };
-
-  return this;
-
-  function showDetails() {
-    if (dom.reporter.className.search(/showDetails/) === -1) {
-      dom.reporter.className += " showDetails";
-    }
-  }
-
-  function isUndefined(obj) {
-    return typeof obj === 'undefined';
-  }
-
-  function isDefined(obj) {
-    return !isUndefined(obj);
-  }
-
-  function specPluralizedFor(count) {
-    var str = count + " spec";
-    if (count > 1) {
-      str += "s"
-    }
-    return str;
-  }
-
-};
-
-jasmine.HtmlReporterHelpers.addHelpers(jasmine.HtmlReporter.ReporterView);
-
-
-jasmine.HtmlReporter.SpecView = function(spec, dom, views) {
-  this.spec = spec;
-  this.dom = dom;
-  this.views = views;
-
-  this.symbol = this.createDom('li', { className: 'pending' });
-  this.dom.symbolSummary.appendChild(this.symbol);
-
-  this.summary = this.createDom('div', { className: 'specSummary' },
-    this.createDom('a', {
-      className: 'description',
-      href: jasmine.HtmlReporter.sectionLink(this.spec.getFullName()),
-      title: this.spec.getFullName()
-    }, this.spec.description)
-  );
-
-  this.detail = this.createDom('div', { className: 'specDetail' },
-      this.createDom('a', {
-        className: 'description',
-        href: '?spec=' + encodeURIComponent(this.spec.getFullName()),
-        title: this.spec.getFullName()
-      }, this.spec.getFullName())
-  );
-};
-
-jasmine.HtmlReporter.SpecView.prototype.status = function() {
-  return this.getSpecStatus(this.spec);
-};
-
-jasmine.HtmlReporter.SpecView.prototype.refresh = function() {
-  this.symbol.className = this.status();
-
-  switch (this.status()) {
-    case 'skipped':
-      break;
-
-    case 'passed':
-      this.appendSummaryToSuiteDiv();
-      break;
-
-    case 'failed':
-      this.appendSummaryToSuiteDiv();
-      this.appendFailureDetail();
-      break;
-  }
-};
-
-jasmine.HtmlReporter.SpecView.prototype.appendSummaryToSuiteDiv = function() {
-  this.summary.className += ' ' + this.status();
-  this.appendToSummary(this.spec, this.summary);
-};
-
-jasmine.HtmlReporter.SpecView.prototype.appendFailureDetail = function() {
-  this.detail.className += ' ' + this.status();
-
-  var resultItems = this.spec.results().getItems();
-  var messagesDiv = this.createDom('div', { className: 'messages' });
-
-  for (var i = 0; i < resultItems.length; i++) {
-    var result = resultItems[i];
-
-    if (result.type == 'log') {
-      messagesDiv.appendChild(this.createDom('div', {className: 'resultMessage log'}, result.toString()));
-    } else if (result.type == 'expect' && result.passed && !result.passed()) {
-      messagesDiv.appendChild(this.createDom('div', {className: 'resultMessage fail'}, result.message));
-
-      if (result.trace.stack) {
-        messagesDiv.appendChild(this.createDom('div', {className: 'stackTrace'}, result.trace.stack));
-      }
-    }
-  }
-
-  if (messagesDiv.childNodes.length > 0) {
-    this.detail.appendChild(messagesDiv);
-    this.dom.details.appendChild(this.detail);
-  }
-};
-
-jasmine.HtmlReporterHelpers.addHelpers(jasmine.HtmlReporter.SpecView);jasmine.HtmlReporter.SuiteView = function(suite, dom, views) {
-  this.suite = suite;
-  this.dom = dom;
-  this.views = views;
-
-  this.element = this.createDom('div', { className: 'suite' },
-    this.createDom('a', { className: 'description', href: jasmine.HtmlReporter.sectionLink(this.suite.getFullName()) }, this.suite.description)
-  );
-
-  this.appendToSummary(this.suite, this.element);
-};
-
-jasmine.HtmlReporter.SuiteView.prototype.status = function() {
-  return this.getSpecStatus(this.suite);
-};
-
-jasmine.HtmlReporter.SuiteView.prototype.refresh = function() {
-  this.element.className += " " + this.status();
-};
-
-jasmine.HtmlReporterHelpers.addHelpers(jasmine.HtmlReporter.SuiteView);
-
-/* @deprecated Use jasmine.HtmlReporter instead
- */
-jasmine.TrivialReporter = function(doc) {
-  this.document = doc || document;
-  this.suiteDivs = {};
-  this.logRunningSpecs = false;
-};
-
-jasmine.TrivialReporter.prototype.createDom = function(type, attrs, childrenVarArgs) {
-  var el = document.createElement(type);
-
-  for (var i = 2; i < arguments.length; i++) {
-    var child = arguments[i];
-
-    if (typeof child === 'string') {
-      el.appendChild(document.createTextNode(child));
-    } else {
-      if (child) { el.appendChild(child); }
-    }
-  }
-
-  for (var attr in attrs) {
-    if (attr == "className") {
-      el[attr] = attrs[attr];
-    } else {
-      el.setAttribute(attr, attrs[attr]);
-    }
-  }
-
-  return el;
-};
-
-jasmine.TrivialReporter.prototype.reportRunnerStarting = function(runner) {
-  var showPassed, showSkipped;
-
-  this.outerDiv = this.createDom('div', { id: 'TrivialReporter', className: 'jasmine_reporter' },
-      this.createDom('div', { className: 'banner' },
-        this.createDom('div', { className: 'logo' },
-            this.createDom('span', { className: 'title' }, "Jasmine"),
-            this.createDom('span', { className: 'version' }, runner.env.versionString())),
-        this.createDom('div', { className: 'options' },
-            "Show ",
-            showPassed = this.createDom('input', { id: "__jasmine_TrivialReporter_showPassed__", type: 'checkbox' }),
-            this.createDom('label', { "for": "__jasmine_TrivialReporter_showPassed__" }, " passed "),
-            showSkipped = this.createDom('input', { id: "__jasmine_TrivialReporter_showSkipped__", type: 'checkbox' }),
-            this.createDom('label', { "for": "__jasmine_TrivialReporter_showSkipped__" }, " skipped")
-            )
-          ),
-
-      this.runnerDiv = this.createDom('div', { className: 'runner running' },
-          this.createDom('a', { className: 'run_spec', href: '?' }, "run all"),
-          this.runnerMessageSpan = this.createDom('span', {}, "Running..."),
-          this.finishedAtSpan = this.createDom('span', { className: 'finished-at' }, ""))
-      );
-
-  this.document.body.appendChild(this.outerDiv);
-
-  var suites = runner.suites();
-  for (var i = 0; i < suites.length; i++) {
-    var suite = suites[i];
-    var suiteDiv = this.createDom('div', { className: 'suite' },
-        this.createDom('a', { className: 'run_spec', href: '?spec=' + encodeURIComponent(suite.getFullName()) }, "run"),
-        this.createDom('a', { className: 'description', href: '?spec=' + encodeURIComponent(suite.getFullName()) }, suite.description));
-    this.suiteDivs[suite.id] = suiteDiv;
-    var parentDiv = this.outerDiv;
-    if (suite.parentSuite) {
-      parentDiv = this.suiteDivs[suite.parentSuite.id];
-    }
-    parentDiv.appendChild(suiteDiv);
-  }
-
-  this.startedAt = new Date();
-
-  var self = this;
-  showPassed.onclick = function(evt) {
-    if (showPassed.checked) {
-      self.outerDiv.className += ' show-passed';
-    } else {
-      self.outerDiv.className = self.outerDiv.className.replace(/ show-passed/, '');
-    }
-  };
-
-  showSkipped.onclick = function(evt) {
-    if (showSkipped.checked) {
-      self.outerDiv.className += ' show-skipped';
-    } else {
-      self.outerDiv.className = self.outerDiv.className.replace(/ show-skipped/, '');
-    }
-  };
-};
-
-jasmine.TrivialReporter.prototype.reportRunnerResults = function(runner) {
-  var results = runner.results();
-  var className = (results.failedCount > 0) ? "runner failed" : "runner passed";
-  this.runnerDiv.setAttribute("class", className);
-  //do it twice for IE
-  this.runnerDiv.setAttribute("className", className);
-  var specs = runner.specs();
-  var specCount = 0;
-  for (var i = 0; i < specs.length; i++) {
-    if (this.specFilter(specs[i])) {
-      specCount++;
-    }
-  }
-  var message = "" + specCount + " spec" + (specCount == 1 ? "" : "s" ) + ", " + results.failedCount + " failure" + ((results.failedCount == 1) ? "" : "s");
-  message += " in " + ((new Date().getTime() - this.startedAt.getTime()) / 1000) + "s";
-  this.runnerMessageSpan.replaceChild(this.createDom('a', { className: 'description', href: '?'}, message), this.runnerMessageSpan.firstChild);
-
-  this.finishedAtSpan.appendChild(document.createTextNode("Finished at " + new Date().toString()));
-};
-
-jasmine.TrivialReporter.prototype.reportSuiteResults = function(suite) {
-  var results = suite.results();
-  var status = results.passed() ? 'passed' : 'failed';
-  if (results.totalCount === 0) { // todo: change this to check results.skipped
-    status = 'skipped';
-  }
-  this.suiteDivs[suite.id].className += " " + status;
-};
-
-jasmine.TrivialReporter.prototype.reportSpecStarting = function(spec) {
-  if (this.logRunningSpecs) {
-    this.log('>> Jasmine Running ' + spec.suite.description + ' ' + spec.description + '...');
-  }
-};
-
-jasmine.TrivialReporter.prototype.reportSpecResults = function(spec) {
-  var results = spec.results();
-  var status = results.passed() ? 'passed' : 'failed';
-  if (results.skipped) {
-    status = 'skipped';
-  }
-  var specDiv = this.createDom('div', { className: 'spec '  + status },
-      this.createDom('a', { className: 'run_spec', href: '?spec=' + encodeURIComponent(spec.getFullName()) }, "run"),
-      this.createDom('a', {
-        className: 'description',
-        href: '?spec=' + encodeURIComponent(spec.getFullName()),
-        title: spec.getFullName()
-      }, spec.description));
-
-
-  var resultItems = results.getItems();
-  var messagesDiv = this.createDom('div', { className: 'messages' });
-  for (var i = 0; i < resultItems.length; i++) {
-    var result = resultItems[i];
-
-    if (result.type == 'log') {
-      messagesDiv.appendChild(this.createDom('div', {className: 'resultMessage log'}, result.toString()));
-    } else if (result.type == 'expect' && result.passed && !result.passed()) {
-      messagesDiv.appendChild(this.createDom('div', {className: 'resultMessage fail'}, result.message));
-
-      if (result.trace.stack) {
-        messagesDiv.appendChild(this.createDom('div', {className: 'stackTrace'}, result.trace.stack));
-      }
-    }
-  }
-
-  if (messagesDiv.childNodes.length > 0) {
-    specDiv.appendChild(messagesDiv);
-  }
-
-  this.suiteDivs[spec.suite.id].appendChild(specDiv);
-};
-
-jasmine.TrivialReporter.prototype.log = function() {
-  var console = jasmine.getGlobal().console;
-  if (console && console.log) {
-    if (console.log.apply) {
-      console.log.apply(console, arguments);
-    } else {
-      console.log(arguments); // ie fix: console.log.apply doesn't exist on ie
-    }
-  }
-};
-
-jasmine.TrivialReporter.prototype.getLocation = function() {
-  return this.document.location;
-};
-
-jasmine.TrivialReporter.prototype.specFilter = function(spec) {
-  var paramMap = {};
-  var params = this.getLocation().search.substring(1).split('&');
-  for (var i = 0; i < params.length; i++) {
-    var p = params[i].split('=');
-    paramMap[decodeURIComponent(p[0])] = decodeURIComponent(p[1]);
-  }
-
-  if (!paramMap.spec) {
-    return true;
-  }
-  return spec.getFullName().indexOf(paramMap.spec) === 0;
-};

inst/tests-js/lib/jasmine-1.3.1/jasmine.css

@@ -1,82 +0,0 @@
-body { background-color: #eeeeee; padding: 0; margin: 5px; overflow-y: scroll; }
-
-#HTMLReporter { font-size: 11px; font-family: Monaco, "Lucida Console", monospace; line-height: 14px; color: #333333; }
-#HTMLReporter a { text-decoration: none; }
-#HTMLReporter a:hover { text-decoration: underline; }
-#HTMLReporter p, #HTMLReporter h1, #HTMLReporter h2, #HTMLReporter h3, #HTMLReporter h4, #HTMLReporter h5, #HTMLReporter h6 { margin: 0; line-height: 14px; }
-#HTMLReporter .banner, #HTMLReporter .symbolSummary, #HTMLReporter .summary, #HTMLReporter .resultMessage, #HTMLReporter .specDetail .description, #HTMLReporter .alert .bar, #HTMLReporter .stackTrace { padding-left: 9px; padding-right: 9px; }
-#HTMLReporter #jasmine_content { position: fixed; right: 100%; }
-#HTMLReporter .version { color: #aaaaaa; }
-#HTMLReporter .banner { margin-top: 14px; }
-#HTMLReporter .duration { color: #aaaaaa; float: right; }
-#HTMLReporter .symbolSummary { overflow: hidden; *zoom: 1; margin: 14px 0; }
-#HTMLReporter .symbolSummary li { display: block; float: left; height: 7px; width: 14px; margin-bottom: 7px; font-size: 16px; }
-#HTMLReporter .symbolSummary li.passed { font-size: 14px; }
-#HTMLReporter .symbolSummary li.passed:before { color: #5e7d00; content: "\02022"; }
-#HTMLReporter .symbolSummary li.failed { line-height: 9px; }
-#HTMLReporter .symbolSummary li.failed:before { color: #b03911; content: "x"; font-weight: bold; margin-left: -1px; }
-#HTMLReporter .symbolSummary li.skipped { font-size: 14px; }
-#HTMLReporter .symbolSummary li.skipped:before { color: #bababa; content: "\02022"; }
-#HTMLReporter .symbolSummary li.pending { line-height: 11px; }
-#HTMLReporter .symbolSummary li.pending:before { color: #aaaaaa; content: "-"; }
-#HTMLReporter .exceptions { color: #fff; float: right; margin-top: 5px; margin-right: 5px; }
-#HTMLReporter .bar { line-height: 28px; font-size: 14px; display: block; color: #eee; }
-#HTMLReporter .runningAlert { background-color: #666666; }
-#HTMLReporter .skippedAlert { background-color: #aaaaaa; }
-#HTMLReporter .skippedAlert:first-child { background-color: #333333; }
-#HTMLReporter .skippedAlert:hover { text-decoration: none; color: white; text-decoration: underline; }
-#HTMLReporter .passingAlert { background-color: #a6b779; }
-#HTMLReporter .passingAlert:first-child { background-color: #5e7d00; }
-#HTMLReporter .failingAlert { background-color: #cf867e; }
-#HTMLReporter .failingAlert:first-child { background-color: #b03911; }
-#HTMLReporter .results { margin-top: 14px; }
-#HTMLReporter #details { display: none; }
-#HTMLReporter .resultsMenu, #HTMLReporter .resultsMenu a { background-color: #fff; color: #333333; }
-#HTMLReporter.showDetails .summaryMenuItem { font-weight: normal; text-decoration: inherit; }
-#HTMLReporter.showDetails .summaryMenuItem:hover { text-decoration: underline; }
-#HTMLReporter.showDetails .detailsMenuItem { font-weight: bold; text-decoration: underline; }
-#HTMLReporter.showDetails .summary { display: none; }
-#HTMLReporter.showDetails #details { display: block; }
-#HTMLReporter .summaryMenuItem { font-weight: bold; text-decoration: underline; }
-#HTMLReporter .summary { margin-top: 14px; }
-#HTMLReporter .summary .suite .suite, #HTMLReporter .summary .specSummary { margin-left: 14px; }
-#HTMLReporter .summary .specSummary.passed a { color: #5e7d00; }
-#HTMLReporter .summary .specSummary.failed a { color: #b03911; }
-#HTMLReporter .description + .suite { margin-top: 0; }
-#HTMLReporter .suite { margin-top: 14px; }
-#HTMLReporter .suite a { color: #333333; }
-#HTMLReporter #details .specDetail { margin-bottom: 28px; }
-#HTMLReporter #details .specDetail .description { display: block; color: white; background-color: #b03911; }
-#HTMLReporter .resultMessage { padding-top: 14px; color: #333333; }
-#HTMLReporter .resultMessage span.result { display: block; }
-#HTMLReporter .stackTrace { margin: 5px 0 0 0; max-height: 224px; overflow: auto; line-height: 18px; color: #666666; border: 1px solid #ddd; background: white; white-space: pre; }
-
-#TrivialReporter { padding: 8px 13px; position: absolute; top: 0; bottom: 0; left: 0; right: 0; overflow-y: scroll; background-color: white; font-family: "Helvetica Neue Light", "Lucida Grande", "Calibri", "Arial", sans-serif; /*.resultMessage {*/ /*white-space: pre;*/ /*}*/ }
-#TrivialReporter a:visited, #TrivialReporter a { color: #303; }
-#TrivialReporter a:hover, #TrivialReporter a:active { color: blue; }
-#TrivialReporter .run_spec { float: right; padding-right: 5px; font-size: .8em; text-decoration: none; }
-#TrivialReporter .banner { color: #303; background-color: #fef; padding: 5px; }
-#TrivialReporter .logo { float: left; font-size: 1.1em; padding-left: 5px; }
-#TrivialReporter .logo .version { font-size: .6em; padding-left: 1em; }
-#TrivialReporter .runner.running { background-color: yellow; }
-#TrivialReporter .options { text-align: right; font-size: .8em; }
-#TrivialReporter .suite { border: 1px outset gray; margin: 5px 0; padding-left: 1em; }
-#TrivialReporter .suite .suite { margin: 5px; }
-#TrivialReporter .suite.passed { background-color: #dfd; }
-#TrivialReporter .suite.failed { background-color: #fdd; }
-#TrivialReporter .spec { margin: 5px; padding-left: 1em; clear: both; }
-#TrivialReporter .spec.failed, #TrivialReporter .spec.passed, #TrivialReporter .spec.skipped { padding-bottom: 5px; border: 1px solid gray; }
-#TrivialReporter .spec.failed { background-color: #fbb; border-color: red; }
-#TrivialReporter .spec.passed { background-color: #bfb; border-color: green; }
-#TrivialReporter .spec.skipped { background-color: #bbb; }
-#TrivialReporter .messages { border-left: 1px dashed gray; padding-left: 1em; padding-right: 1em; }
-#TrivialReporter .passed { background-color: #cfc; display: none; }
-#TrivialReporter .failed { background-color: #fbb; }
-#TrivialReporter .skipped { color: #777; background-color: #eee; display: none; }
-#TrivialReporter .resultMessage span.result { display: block; line-height: 2em; color: black; }
-#TrivialReporter .resultMessage .mismatch { color: black; }
-#TrivialReporter .stackTrace { white-space: pre; font-size: .8em; margin-left: 10px; max-height: 5em; overflow: auto; border: 1px inset red; padding: 1em; background: #eef; }
-#TrivialReporter .finished-at { padding-left: 1em; font-size: .6em; }
-#TrivialReporter.show-passed .passed, #TrivialReporter.show-skipped .skipped { display: block; }
-#TrivialReporter #jasmine_content { position: fixed; right: 100%; }
-#TrivialReporter .runner { border: 1px solid gray; display: block; margin: 5px 0; padding: 2px 0 2px 10px; }

inst/tests/test-bootstrap.r

@@ -7,8 +7,8 @@ test_that("CSS unit validation", {
   }
 
   # Test strings and expected results
-  strings  <- c("100x", "10px", "10.4px", ".4px", "1px0", "px", "5", "%", "5%", "auto", "1auto", "")
-  expected <- c(NA,     "10px", "10.4px", ".4px", NA,     NA,   NA,  NA,  "5%", "auto", NA,      NA)
+  strings  <- c("100x", "10px", "10.4px", ".4px", "1px0", "px", "5",  "%", "5%", "auto", "1auto", "")
+  expected <- c(NA,     "10px", "10.4px", ".4px", NA,       NA, "5px", NA, "5%", "auto", NA,      NA)
   results <- vapply(strings, validateCssUnit_wrap, character(1), USE.NAMES = FALSE)
   expect_equal(results, expected)
 
@@ -23,34 +23,132 @@ test_that("Repeated names for selectInput and radioButtons choices", {
 
   # Select input
   x <- selectInput('id','label', choices = c(a='x1', a='x2', b='x3'), selectize = FALSE)
-  choices <- x[[2]]$children
-
-  expect_equal(choices[[1]]$children[[1]], 'a')
-  expect_equal(choices[[1]]$attribs$value, 'x1')
-  expect_equal(choices[[1]]$attribs$selected, 'selected')
-
-  expect_equal(choices[[2]]$children[[1]], 'a')
-  expect_equal(choices[[2]]$attribs$value, 'x2')
-  expect_equal(choices[[2]]$attribs$selected, NULL)
-
-  expect_equal(choices[[3]]$children[[1]], 'b')
-  expect_equal(choices[[3]]$attribs$value, 'x3')
-  expect_equal(choices[[3]]$attribs$selected, NULL)
+  expect_true(grepl(fixed = TRUE,
+    '<select id="id"><option value="x1" selected>a</option>\n<option value="x2">a</option>\n<option value="x3">b</option></select>',
+     format(x)
+  ))
 
 
   # Radio buttons
   x <- radioButtons('id','label', choices = c(a='x1', a='x2', b='x3'))
   choices <- x$children
 
-  expect_equal(choices[[2]][[1]]$children[[2]]$children[[1]], 'a')
-  expect_equal(choices[[2]][[1]]$children[[1]]$attribs$value, 'x1')
-  expect_equal(choices[[2]][[1]]$children[[1]]$attribs$checked, 'checked')
+  expect_equal(choices[[2]]$children[[1]][[1]]$children[[1]]$children[[2]]$children[[1]], 'a')
+  expect_equal(choices[[2]]$children[[1]][[1]]$children[[1]]$children[[1]]$attribs$value, 'x1')
+  expect_equal(choices[[2]]$children[[1]][[1]]$children[[1]]$children[[1]]$attribs$checked, 'checked')
 
-  expect_equal(choices[[2]][[2]]$children[[2]]$children[[1]], 'a')
-  expect_equal(choices[[2]][[2]]$children[[1]]$attribs$value, 'x2')
-  expect_equal(choices[[2]][[2]]$children[[1]]$attribs$checked, NULL)
+  expect_equal(choices[[2]]$children[[1]][[2]]$children[[1]]$children[[2]]$children[[1]], 'a')
+  expect_equal(choices[[2]]$children[[1]][[2]]$children[[1]]$children[[1]]$attribs$value, 'x2')
+  expect_equal(choices[[2]]$children[[1]][[2]]$children[[1]]$children[[1]]$attribs$checked, NULL)
 
-  expect_equal(choices[[2]][[3]]$children[[2]]$children[[1]], 'b')
-  expect_equal(choices[[2]][[3]]$children[[1]]$attribs$value, 'x3')
-  expect_equal(choices[[2]][[3]]$children[[1]]$attribs$checked, NULL)
+  expect_equal(choices[[2]]$children[[1]][[3]]$children[[1]]$children[[2]]$children[[1]], 'b')
+  expect_equal(choices[[2]]$children[[1]][[3]]$children[[1]]$children[[1]]$attribs$value, 'x3')
+  expect_equal(choices[[2]]$children[[1]][[3]]$children[[1]]$children[[1]]$attribs$checked, NULL)
+})
+
+
+test_that("Choices are correctly assigned names", {
+  # Unnamed vector
+  expect_identical(
+    choicesWithNames(c("a","b","3")),
+    list(a="a", b="b", "3"="3")
+  )
+  # Unnamed list
+  expect_identical(
+    choicesWithNames(list("a","b",3)),
+    list(a="a", b="b", "3"=3)
+  )
+  # Vector, with some named, some not
+  expect_identical(
+    choicesWithNames(c(A="a", "b", C="3", "4")),
+    list(A="a", "b"="b", C="3", "4"="4")
+  )
+  # List, with some named, some not
+  expect_identical(
+    choicesWithNames(list(A="a", "b", C=3, 4)),
+    list(A="a", "b"="b", C=3, "4"=4)
+  )
+  # List, named, with a sub-vector
+  expect_identical(
+    choicesWithNames(list(A="a", B="b", C=c("d", "e"))),
+    list(A="a", B="b", C=list(d="d", e="e"))
+  )
+  # List, named, with sublist
+  expect_identical(
+    choicesWithNames(list(A="a", B="b", C=list("d", "e"))),
+    list(A="a", B="b", C=list(d="d", e="e"))
+  )
+  # List, named, with a named sub-vector of length 1
+  expect_identical(
+    choicesWithNames(list(A="a", B="b", C=c(D="d"))),
+    list(A="a", B="b", C=list(D="d"))
+  )
+  # List, some named, with sublist
+  expect_identical(
+    choicesWithNames(list(A="a", "b", C=list("d", E="e"))),
+    list(A="a", b="b", C=list(d="d", E="e"))
+  )
+  # Deeper nesting
+  expect_identical(
+    choicesWithNames(list(A="a", "b", C=list(D=list("e", "f"), G=c(H="h", "i")))),
+    list(A="a", b="b", C=list(D=list(e="e", f="f"), G=list(H="h", i="i")))
+  )
+  # Error when sublist is unnamed
+  expect_error(choicesWithNames(list(A="a", "b", list(1,2))))
+})
+
+
+test_that("selectOptions returns correct HTML", {
+  # None selected
+  expect_identical(
+    selectOptions(choicesWithNames(list("a", "b")), list()),
+    HTML("<option value=\"a\">a</option>\n<option value=\"b\">b</option>")
+  )
+  # One selected
+  expect_identical(
+    selectOptions(choicesWithNames(list("a", "b")), "a"),
+    HTML("<option value=\"a\" selected>a</option>\n<option value=\"b\">b</option>")
+  )
+  # One selected, with named items
+  expect_identical(
+    selectOptions(choicesWithNames(list(A="a", B="b")), "a"),
+    HTML("<option value=\"a\" selected>A</option>\n<option value=\"b\">B</option>")
+  )
+  # Two selected, with optgroup
+  expect_identical(
+    selectOptions(choicesWithNames(list("a", B=list("c", D="d"))), c("a", "d")),
+    HTML("<option value=\"a\" selected>a</option>\n<optgroup label=\"B\">\n<option value=\"c\">c</option>\n<option value=\"d\" selected>D</option>\n</optgroup>")
+  )
+
+  # Escape HTML in strings
+  expect_identical(
+    selectOptions(choicesWithNames(list("<A>"="a", B="b")), "a"),
+    HTML("<option value=\"a\" selected>&lt;A&gt;</option>\n<option value=\"b\">B</option>")
+  )
+})
+
+test_that("selectInput selects items by default", {
+  # None specified as selected (defaults to first)
+  expect_true(grepl(fixed = TRUE,
+    '<option value="a" selected>',
+    selectInput('x', 'x', list("a", "b"))
+  ))
+
+  # Nested list (optgroup)
+  expect_true(grepl(fixed = TRUE,
+    '<option value="a" selected>',
+    selectInput('x', 'x', list(A=list("a", "b"), "c"))
+  ))
+
+  # Nothing selected when choices=NULL
+  expect_true(grepl(fixed = TRUE,
+    '<select id="x"></select>',
+    format(selectInput('x', NULL, NULL, selectize = FALSE))
+  ))
+
+  # None specified as selected. With multiple=TRUE, none selected by default.
+  expect_true(grepl(fixed = TRUE,
+    '<option value="a">',
+    selectInput('x', 'x', list("a", "b"), multiple = TRUE)
+  ))
 })

inst/tests/test-gc.r

@@ -7,10 +7,8 @@ test_that("unreferenced observers are garbage collected", {
   obs  <- observe({ vals$A })
 
   # These are called when the objects are garbage-collected
-  reg.finalizer(attr(.subset2(vals,'impl'), ".xData"),
-                function(e) vals_removed <<- TRUE)
-  reg.finalizer(attr(obs, ".xData"),
-                function(e) obs_removed  <<- TRUE)
+  reg.finalizer(.subset2(vals,'impl'), function(e) vals_removed <<- TRUE)
+  reg.finalizer(obs, function(e) obs_removed  <<- TRUE)
 
   flushReact()
 
@@ -42,10 +40,8 @@ test_that("suspended observers are garbage collected", {
   obs  <- observe({ vals$A })
 
   # These are called when the objects are garbage-collected
-  reg.finalizer(attr(.subset2(vals,'impl'), ".xData"),
-                function(e) vals_removed <<- TRUE)
-  reg.finalizer(attr(obs, ".xData"),
-                function(e) obs_removed  <<- TRUE)
+  reg.finalizer(.subset2(vals,'impl'), function(e) vals_removed <<- TRUE)
+  reg.finalizer(obs, function(e) obs_removed <<- TRUE)
 
   flushReact()
 

inst/tests/test-reactivity.r

@@ -490,30 +490,30 @@ test_that("names() and reactiveValuesToList()", {
 
 test_that("Observer pausing works", {
   values <- reactiveValues(a=1)
-  
+
   funcA <- reactive({
     values$a
   })
-  
+
   obsB <- observe({
     funcA()
   })
-  
+
   # Important: suspend() only affects observer at invalidation time
-  
+
   # Observers are invalidated at creation time, so it will run once regardless
   # of being suspended
   obsB$suspend()
   flushReact()
   expect_equal(execCount(funcA), 1)
   expect_equal(execCount(obsB), 1)
-  
+
   # When resuming, if nothing changed, don't do anything
   obsB$resume()
   flushReact()
   expect_equal(execCount(funcA), 1)
   expect_equal(execCount(obsB), 1)
-  
+
   # Make sure suspended observers do not flush, but do invalidate
   obsB_invalidated <- FALSE
   obsB$onInvalidate(function() {obsB_invalidated <<- TRUE})
@@ -523,20 +523,20 @@ test_that("Observer pausing works", {
   expect_equal(obsB_invalidated, TRUE)
   expect_equal(execCount(funcA), 1)
   expect_equal(execCount(obsB), 1)
-  
+
   obsB$resume()
   values$a <- 2.5
   obsB$suspend()
   flushReact()
   expect_equal(execCount(funcA), 2)
   expect_equal(execCount(obsB), 2)
-  
+
   values$a <- 3
   flushReact()
 
   expect_equal(execCount(funcA), 2)
   expect_equal(execCount(obsB), 2)
-  
+
   # If onInvalidate() is added _after_ obsB is suspended and the values$a
   # changes, then it shouldn't get run (onInvalidate runs on invalidation, not
   # on flush)
@@ -554,11 +554,11 @@ test_that("Observer pausing works", {
 test_that("suspended/resumed observers run at most once", {
 
   values <- reactiveValues(A=1)
-  obs <- observe(function() {
+  obs <- observe({
     values$A
   })
   expect_equal(execCount(obs), 0)
-  
+
   # First flush should run obs once
   flushReact()
   expect_equal(execCount(obs), 1)
@@ -658,9 +658,9 @@ test_that("Observer priorities are respected", {
   observe(results <<- c(results, 20), priority=20L)
   observe(results <<- c(results, 21), priority=20)
   observe(results <<- c(results, 22), priority=20L)
-  
+
   flushReact()
-  
+
   expect_identical(results, c(30, 20, 21, 22, 10))
 })
 
@@ -670,7 +670,7 @@ test_that("reactivePoll and reactiveFileReader", {
   write.csv(cars, file=path, row.names=FALSE)
   rfr <- reactiveFileReader(100, NULL, path, read.csv)
   expect_equal(isolate(rfr()), cars)
-  
+
   write.csv(rbind(cars, cars), file=path, row.names=FALSE)
   Sys.sleep(0.15)
   timerCallbacks$executeElapsed()
@@ -694,6 +694,8 @@ test_that("classes of reactive object", {
   expect_false(is.reactive(v))
   expect_true(is.reactive(r))
   expect_false(is.reactive(o))
+
+  o$destroy()
 })
 
 test_that("{} and NULL also work in reactive()", {
@@ -707,3 +709,227 @@ test_that("shiny.suppressMissingContextError option works", {
 
   expect_true(reactive(TRUE)())
 })
+
+test_that("reactive domains are inherited", {
+
+  domainA <- createMockDomain()
+  domainB <- createMockDomain()
+
+  local({
+    domainY <- NULL
+    domainZ <- NULL
+    x <- observe({
+
+      y <- observe({
+        # Should be domainA (inherited from observer x)
+        domainY <<- getDefaultReactiveDomain()
+      })
+
+      z <- observe({
+        # Should be domainB (explicitly passed in)
+        domainZ <<- getDefaultReactiveDomain()
+      }, domain = domainB)
+
+    }, domain = domainA)
+
+    flushReact()
+    flushReact()
+
+    expect_identical(domainY, domainA)
+    expect_identical(domainZ, domainB)
+  })
+
+  local({
+    domainY <- 1
+    x <- NULL
+    y <- NULL
+    z <- NULL
+    r3 <- NULL
+    domainR3 <- NULL
+
+    r1 <- reactive({
+      y <<- observe({
+        # Should be NULL (r1 has no domain)
+        domainY <<- getDefaultReactiveDomain()
+      })
+    })
+    r2 <- reactive({
+      z <<- observe({
+        # Should be domainB (r2 has explicit domainB)
+        domainZ <<- getDefaultReactiveDomain()
+      })
+    }, domain = domainB)
+
+    observe({
+      r3 <<- reactive({
+        # This should be domainA. Doesn't matter where r3 is invoked, it only
+        # matters where it was created.
+        domainR3 <<- getDefaultReactiveDomain()
+      })
+      r1()
+      r2()
+    }, domain = domainA)
+
+    flushReact()
+    flushReact()
+    isolate(r3())
+
+    expect_identical(execCount(y), 1L)
+    expect_identical(execCount(z), 1L)
+    expect_identical(domainY, NULL)
+    expect_identical(domainZ, domainB)
+    expect_identical(domainR3, domainA)
+  })
+})
+
+test_that("observers autodestroy (or not)", {
+
+  domainA <- createMockDomain()
+  local({
+    a <- observe(NULL, domain = domainA)
+
+    b <- observe(NULL, domain = domainA, autoDestroy = FALSE)
+
+    c <- observe(NULL, domain = domainA)
+    c$setAutoDestroy(FALSE)
+
+    d <- observe(NULL, domain = domainA, autoDestroy = FALSE)
+    d$setAutoDestroy(TRUE)
+
+    e <- observe(NULL)
+
+    domainA$end()
+
+    flushReact()
+
+    expect_identical(execCount(a), 0L)
+    expect_identical(execCount(b), 1L)
+    expect_identical(execCount(c), 1L)
+    expect_identical(execCount(d), 0L)
+    expect_identical(execCount(e), 1L)
+  })
+})
+
+test_that("maskReactiveContext blocks use of reactives", {
+  vals <- reactiveValues(x = 123)
+
+  # Block reactive contexts (created by isolate)
+  expect_error(isolate(maskReactiveContext(vals$x)))
+  expect_error(isolate(isolate(maskReactiveContext(vals$x))))
+
+  # Reactive contexts within maskReactiveContext shouldn't be blocked
+  expect_identical(maskReactiveContext(isolate(vals$x)), 123)
+  expect_identical(isolate(maskReactiveContext(isolate(vals$x))), 123)
+})
+
+test_that("Flush completes even when errors occur", {
+  vals <- reactiveValues(x = 1)
+
+  r <- reactive({
+    if (vals$x == 0) stop("x is zero!")
+    else vals$x
+  })
+
+  # Set up counters
+  n11 <- n12 <- n21 <- n22 <- 0
+
+  observe({
+    n11 <<- n11 + 1
+    r()
+    n12 <<- n12 + 1
+  })
+  observe({
+    n21 <<- n21 + 1
+    r()
+    n22 <<- n22 + 1
+  })
+
+  flushReact()
+  expect_true(all(c(n11, n12, n21, n22) == 1))
+
+  # Trigger an error
+  vals$x <- 0
+  # Errors in reactive are translated to warnings in observers by default
+  expect_warning(flushReact())
+  # Both observers should run up until the reactive that errors
+  expect_true(all(c(n11, n12, n21, n22) == c(2,1,2,1)))
+
+  # Nothing should happen on next flush
+  flushReact()
+  expect_true(all(c(n11, n12, n21, n22) == c(2,1,2,1)))
+})
+
+
+test_that("Alternate error handler function", {
+  vals <- reactiveValues(x = 0)
+
+  r <- reactive({
+    stop("error in reactive!")
+  })
+
+  observe({
+    r()
+  })
+  observe({
+    r()
+  })
+
+  # Alternate observer error handler - increment counter
+  ec <- 0
+  options(shiny.observer.error = function(e, label = NULL, domain = NULL) {
+    ec <<- ec + 1
+  })
+  on.exit(options(shiny.observer.error = NULL))
+
+  flushReact()
+  expect_identical(ec, 2)
+})
+
+test_that("event handling helpers take correct dependencies", {
+  vals <- reactiveValues(action = NULL, x = 1)
+
+  o1_count <- 0
+  o1 <- observeEvent(vals$action, {
+    vals$x
+    o1_count <<- o1_count + 1
+  })
+  o2_count <- 0
+  o2 <- observeEvent(ignoreNULL = FALSE, vals$action, {
+    vals$x
+    o2_count <<- o2_count + 1
+  })
+  r1 <- eventReactive(vals$action, {
+    vals$x
+  })
+  r2 <- eventReactive(ignoreNULL = FALSE, vals$action, {
+    vals$x
+  })
+
+  flushReact()
+
+  expect_error(isolate(r1()))
+  expect_identical(isolate(r2()), 1)
+  expect_equal(o1_count, 0)
+  expect_equal(o2_count, 1)
+  expect_equal(execCount(o1), 1)
+  expect_equal(execCount(o2), 1)
+
+  vals$x <- 2
+  flushReact()
+
+  expect_error(isolate(r1()))
+  expect_identical(isolate(r2()), 1)
+  expect_equal(o1_count, 0)
+  expect_equal(o2_count, 1)
+  expect_equal(execCount(o1), 1)
+  expect_equal(execCount(o2), 1)
+
+  vals$action <- 1
+  flushReact()
+  expect_identical(isolate(r1()), 2)
+  expect_identical(isolate(r2()), 2)
+  expect_equal(o1_count, 1)
+  expect_equal(o2_count, 2)
+  expect_equal(execCount(o1), 2)
+  expect_equal(execCount(o2), 2)
+})

inst/tests/test-stack.R

@@ -0,0 +1,40 @@
+context("Stack")
+
+test_that("Basic operations", {
+  s <- Stack$new()
+  expect_identical(s$size(), 0L)
+
+  s$push(5)$push(6)$push(NULL)$push(list(a=1,b=2))
+
+  expect_identical(s$pop(), list(a=1,b=2))
+  expect_identical(s$peek(), NULL)
+  expect_identical(s$pop(), NULL)
+  expect_identical(s$size(), 2L)
+
+  # as_list() returns in the order that they were inserted
+  expect_identical(s$as_list(), list(5, 6))
+})
+
+
+test_that("Pushing multiple", {
+  s <- Stack$new()
+  s$push(1,2,3)
+  s$push(4,5, .list=list(6,list(7,8)))
+  s$push(9,10)
+  expect_identical(s$as_list(), list(1,2,3,4,5,6,list(7,8),9,10))
+  expect_identical(s$pop(), 10)
+  expect_identical(s$pop(), 9)
+  expect_identical(s$pop(), list(7,8))
+})
+
+
+test_that("Popping from empty stack", {
+  s <- Stack$new()
+  expect_null(s$pop())
+  expect_null(s$pop())
+  expect_null(s$peek())
+  expect_identical(s$size(), 0L)
+
+  s$push(5)$push(6)
+  expect_identical(s$as_list(), list(5, 6))
+})

inst/tests/test-staticdocs.R

@@ -1,19 +1,19 @@
 context("staticdocs")
 
 test_that("All man pages have an entry in staticdocs/index.r", {
-  if (!all(file.exists(c('../../staticdocs', '../../man')))) {
+  if (!all(file.exists(c('../../inst/staticdocs', '../../man')))) {
     # This test works only when run against a package directory
     return()
   }
   # Known not to be indexed
-  known_unindexed <- c("shiny-package")
+  known_unindexed <- c("shiny-package", "knitr_methods", "knitr_methods_htmltools")
 
   indexed_topics <- local({
     result <- character(0)
     sd_section <- function(dummy1, dummy2, section_topics) {
       result <<- c(result, section_topics)
     }
-    source("../../staticdocs/index.r", local = TRUE)
+    source("../../inst/staticdocs/index.r", local = TRUE)
     result
   })
 
@@ -22,5 +22,14 @@ test_that("All man pages have an entry in staticdocs/index.r", {
   # This test ensures that every documented topic is included in
   # staticdocs/index.r, unless explicitly waived by specifying it
   # in the known_unindexed variable above.
-  expect_equivalent(sort(all_topics), sort(c(known_unindexed, indexed_topics)))
+  missing <- setdiff(sort(all_topics), sort(c(known_unindexed, indexed_topics)))
+  unknown <- setdiff(sort(c(known_unindexed, indexed_topics)), sort(all_topics))
+  expect_equal(length(missing), 0,
+    info = paste("Functions missing from index:\n",
+      paste("  ", missing, sep = "", collapse = "\n"),
+      sep = ""))
+  expect_equal(length(unknown), 0,
+    info = paste("Unrecognized functions in index.r:\n",
+      paste("  ", unknown, sep = "", collapse = "\n"),
+      sep = ""))
 })

inst/tests/test-tags.r

@@ -1,432 +0,0 @@
-context("tags")
-
-test_that("Basic tag writing works", {
-  expect_equal(as.character(tagList("hi")), HTML("hi"))
-  expect_equal(
-    as.character(tagList("one", "two", tagList("three"))),
-    HTML("one\ntwo\nthree"))
-  expect_equal(
-    as.character(tags$b("one")),
-    HTML("<b>one</b>"))
-  expect_equal(
-    as.character(tags$b("one", "two")),
-    HTML("<b>\n  one\n  two\n</b>"))
-  expect_equal(
-    as.character(tagList(list("one"))),
-    HTML("one"))
-  expect_equal(
-    as.character(tagList(list(tagList("one")))),
-    HTML("one"))
-  expect_equal(
-    as.character(tagList(tags$br(), "one")),
-    HTML("<br/>\none"))
-})
-
-
-test_that("withTags works", {
-  output_tags <- tags$div(class = "myclass",
-    tags$h3("header"),
-    tags$p("text here")
-  )
-  output_withhtml <- withTags(
-    div(class = "myclass",
-      h3("header"),
-      p("text here")
-    )
-  )
-  expect_identical(output_tags, output_withhtml)
-
-
-  # Check that current environment is searched
-  x <- 100
-  expect_identical(tags$p(x), withTags(p(x)))
-
-  # Just to make sure, run it in a function, which has its own environment
-  foo <- function() {
-    y <- 100
-    withTags(p(y))
-  }
-  expect_identical(tags$p(100), foo())
-})
-
-
-test_that("HTML escaping in tags", {
-  # Regular text is escaped
-  expect_equivalent(format(div("<a&b>")), "<div>&lt;a&amp;b&gt;</div>")
-
-  # Text in HTML() isn't escaped
-  expect_equivalent(format(div(HTML("<a&b>"))), "<div><a&b></div>")
-
-  # Text in a property is escaped
-  expect_equivalent(format(div(class = "<a&b>", "text")),
-                    '<div class="&lt;a&amp;b&gt;">text</div>')
-
-  # HTML() has no effect in a property like 'class'
-  expect_equivalent(format(div(class = HTML("<a&b>"), "text")),
-                    '<div class="&lt;a&amp;b&gt;">text</div>')
-})
-
-
-test_that("Adding child tags", {
-  tag_list <- list(tags$p("tag1"), tags$b("tag2"), tags$i("tag3"))
-
-  # Creating nested tags by calling the tag$div function and passing a list
-  t1 <- tags$div(class="foo", tag_list)
-  expect_equal(length(t1$children), 1)
-  expect_equal(length(t1$children[[1]]), 3)
-  expect_equal(t1$children[[1]][[1]]$name, "p")
-  expect_equal(t1$children[[1]][[1]]$children[[1]], "tag1")
-  expect_equal(t1$children[[1]][[2]]$name, "b")
-  expect_equal(t1$children[[1]][[2]]$children[[1]], "tag2")
-  expect_equal(t1$children[[1]][[3]]$name, "i")
-  expect_equal(t1$children[[1]][[3]]$children[[1]], "tag3")
-
-
-  # div tag used as starting point for tests below
-  div_tag <- tags$div(class="foo")
-
-  # Appending each child
-  t2 <- tagAppendChild(div_tag, tag_list[[1]])
-  t2 <- tagAppendChild(t2, tag_list[[2]])
-  t2 <- tagAppendChild(t2, tag_list[[3]])
-  t2a <- do.call(tags$div, c(tag_list, class="foo"))
-  expect_identical(t2a, t2)
-
-
-  # tagSetChildren, using list argument
-  t2 <- tagSetChildren(div_tag, list = tag_list)
-  expect_identical(t2a, t2)
-
-  # tagSetChildren, using ... arguments
-  t2 <- tagSetChildren(div_tag, tag_list[[1]], tag_list[[2]], tag_list[[3]])
-  expect_identical(t2a, t2)
-
-  # tagSetChildren, using ... and list arguments
-  t2 <- tagSetChildren(div_tag, tag_list[[1]], list = tag_list[2:3])
-  expect_identical(t2a, t2)
-
-  # tagSetChildren overwrites existing children
-  t2 <- tagAppendChild(div_tag, p("should replace this tag"))
-  t2 <- tagSetChildren(div_tag, list = tag_list)
-  expect_identical(t2a, t2)
-
-
-  # tagAppendChildren, using list argument
-  t2 <- tagAppendChild(div_tag, tag_list[[1]])
-  t2 <- tagAppendChildren(t2, list = tag_list[2:3])
-  expect_identical(t2a, t2)
-
-  # tagAppendChildren, using ... arguments
-  t2 <- tagAppendChild(div_tag, tag_list[[1]])
-  t2 <- tagAppendChildren(t2, tag_list[[2]], tag_list[[3]])
-  expect_identical(t2a, t2)
-
-  # tagAppendChildren, using ... and list arguments
-  t2 <- tagAppendChild(div_tag, tag_list[[1]])
-  t2 <- tagAppendChildren(t2, tag_list[[2]], list = list(tag_list[[3]]))
-  expect_identical(t2a, t2)
-
-  # tagAppendChildren can start with no children
-  t2 <- tagAppendChildren(div_tag, list = tag_list)
-  expect_identical(t2a, t2)
-
-
-  # tagSetChildren preserves attributes
-  x <- tagSetChildren(div(), HTML("text"))
-  expect_identical(attr(x$children[[1]], "html"), TRUE)
-
-  # tagAppendChildren preserves attributes
-  x <- tagAppendChildren(div(), HTML("text"))
-  expect_identical(attr(x$children[[1]], "html"), TRUE)
-})
-
-
-test_that("Creating simple tags", {
-  # Empty tag
-  expect_identical(
-    div(),
-    structure(
-      list(name = "div", attribs = list(), children = list()),
-      .Names = c("name", "attribs", "children"),
-      class = "shiny.tag"
-    )
-  )
-
-  # Tag with text
-  expect_identical(
-    div("text"),
-    structure(
-      list(name = "div", attribs = list(), children = list("text")),
-      .Names = c("name", "attribs", "children"),
-      class = "shiny.tag"
-    )
-  )
-
-  # NULL attributes are dropped
-  expect_identical(
-    div(a = NULL, b = "value"),
-    div(b = "value")
-  )
-
-  # NULL children are dropped
-  expect_identical(
-    renderTags(div("foo", NULL, list(NULL, list(NULL, "bar"))))$html,
-    renderTags(div("foo", "bar"))$html
-  )
-
-  # Numbers are coerced to strings
-  expect_identical(
-    renderTags(div(1234))$html,
-    renderTags(div("1234"))$html
-  )
-})
-
-
-test_that("Creating nested tags", {
-  # Simple version
-  # Note that the $children list should not have a names attribute
-  expect_identical(
-    div(class="foo", list("a", "b")),
-    structure(
-      list(name = "div",
-           attribs = structure(list(class = "foo"), .Names = "class"),
-           children = list(list("a", "b"))),
-      .Names = c("name", "attribs", "children"),
-      class = "shiny.tag"
-    )
-  )
-
-  # More complex version
-  t1 <- withTags(
-    div(class = "foo",
-      p("child tag"),
-      list(
-        p("in-list child tag 1"),
-        "in-list character string",
-        p(),
-        p("in-list child tag 2")
-      ),
-      "character string",
-      1234
-    )
-  )
-
-  # t1 should be identical to this data structure.
-  # The nested list should be flattened, and non-tag, non-strings should be
-  # converted to strings
-  t1_full <- structure(
-    list(
-      name = "div",
-      attribs = list(class = "foo"),
-      children = list(
-        structure(list(name = "p",
-                       attribs = list(),
-                       children = list("child tag")),
-                  class = "shiny.tag"
-        ),
-        structure(list(name = "p",
-                       attribs = list(),
-                       children = list("in-list child tag 1")),
-                  class = "shiny.tag"
-        ),
-        "in-list character string",
-        structure(list(name = "p",
-                       attribs = list(),
-                       children = list()),
-                  class = "shiny.tag"
-        ),
-        structure(list(name = "p",
-                       attribs = list(),
-                       children = list("in-list child tag 2")),
-                  class = "shiny.tag"
-        ),
-        "character string",
-        "1234"
-      )
-    ),
-    class = "shiny.tag"
-  )
-
-  expect_identical(renderTags(t1)$html, renderTags(t1_full)$html)
-})
-
-test_that("Attributes are preserved", {
-  # HTML() adds an attribute to the data structure (note that this is
-  # different from the 'attribs' field in the list)
-  x <- HTML("<tag>&&</tag>")
-  expect_identical(attr(x, "html"), TRUE)
-  expect_equivalent(format(x), "<tag>&&</tag>")
-
-  # Make sure attributes are preserved when wrapped in other tags
-  x <- div(HTML("<tag>&&</tag>"))
-  expect_equivalent(x$children[[1]], HTML("<tag>&&</tag>"))
-  expect_identical(attr(x$children[[1]], "html"), TRUE)
-  expect_equivalent(format(x), "<div><tag>&&</tag></div>")
-
-  # Deeper nesting
-  x <- div(p(HTML("<tag>&&</tag>")))
-  expect_equivalent(x$children[[1]]$children[[1]], HTML("<tag>&&</tag>"))
-  expect_identical(attr(x$children[[1]]$children[[1]], "html"), TRUE)
-  expect_equivalent(format(x), "<div>\n  <p><tag>&&</tag></p>\n</div>")
-})
-
-
-test_that("Flattening a list of tags", {
-  # Flatten a nested list
-  nested <- list(
-    "a1",
-    list(
-      "b1",
-      list("c1", "c2"),
-      list(),
-      "b2",
-      list("d1", "d2")
-    ),
-    "a2"
-  )
-  flat <- list("a1", "b1", "c1", "c2", "b2", "d1", "d2", "a2")
-  expect_identical(flattenTags(nested), flat)
-
-  # no-op for flat lists
-  expect_identical(flattenTags(list(a="1", "b")), list(a="1", "b"))
-
-  # numbers are coerced to character
-  expect_identical(flattenTags(list(a=1, "b")), list(a="1", "b"))
-
-  # empty list results in empty list
-  expect_identical(flattenTags(list()), list())
-
-  # preserve attributes
-  nested <- list("txt1", list(structure("txt2", prop="prop2")))
-  flat <- list("txt1",
-               structure("txt2", prop="prop2"))
-  expect_identical(flattenTags(nested), flat)
-})
-
-test_that("Head and singleton behavior", {
-  result <- renderTags(tagList(
-    tags$head(singleton("hello"))
-  ))
-
-  expect_identical(result$html, HTML(""))
-  expect_identical(result$head, HTML("  hello"))
-  expect_identical(result$singletons, "60eed8231e688bcba7c275c58dd2e3b4dacb61f0")
-
-  # Ensure that "hello" actually behaves like a singleton
-  result2 <- renderTags(tagList(
-    tags$head(singleton("hello"))
-  ), singletons = result$singletons)
-
-  expect_identical(result$singletons, result2$singletons)
-  expect_identical(result2$head, HTML(""))
-  expect_identical(result2$html, HTML(""))
-
-  result3 <- renderTags(tagList(
-    tags$head(singleton("hello"), singleton("hello"))
-  ))
-  expect_identical(result$singletons, result3$singletons)
-  expect_identical(result3$head, HTML("  hello"))
-
-  # Ensure that singleton can be applied to lists, not just tags
-  result4 <- renderTags(list(singleton(list("hello")), singleton(list("hello"))))
-  expect_identical(result4$singletons, "d7319e3f14167c4c056dd7aa0b274c83fe2291f6")
-  expect_identical(result4$html, renderTags(HTML("hello"))$html)
-})
-
-test_that("Factors are treated as characters, not numbers", {
-  myfactors <- factor(LETTERS[1:3])
-  expect_identical(
-    as.character(tags$option(value=myfactors[[1]], myfactors[[1]])),
-    HTML('<option value="A">A</option>')
-  )
-
-  expect_identical(
-    as.character(tags$option(value=myfactors[[1]], value='B', value=3, myfactors[[1]])),
-    HTML('<option value="A B 3">A</option>')
-  )
-})
-
-test_that("Unusual list contents are rendered correctly", {
-  expect_identical(renderTags(list(NULL)), renderTags(HTML("")))
-  expect_identical(renderTags(list(100)), renderTags(HTML("100")))
-  expect_identical(renderTags(list(list(100))), renderTags(HTML("100")))
-  expect_identical(renderTags(list(list())), renderTags(HTML("")))
-  expect_identical(renderTags(NULL), renderTags(HTML("")))
-})
-
-test_that("Low-level singleton manipulation methods", {
-  # Default arguments drop singleton duplicates and strips the
-  # singletons it keeps of the singleton bit
-  result1 <- takeSingletons(tags$div(
-    singleton(tags$head(tags$script("foo"))),
-    singleton(tags$head(tags$script("foo")))
-  ))
-
-  expect_identical(result1$ui$children[[2]], NULL)
-  expect_false(is(result1$ui$children[[1]], "shiny.singleton"))
-
-  # desingleton=FALSE means drop duplicates but don't strip the
-  # singleton bit
-  result2 <- takeSingletons(tags$div(
-    singleton(tags$head(tags$script("foo"))),
-    singleton(tags$head(tags$script("foo")))
-  ), desingleton=FALSE)
-
-  expect_identical(result2$ui$children[[2]], NULL)
-  expect_is(result2$ui$children[[1]], "shiny.singleton")
-
-  result3 <- surroundSingletons(tags$div(
-    singleton(tags$script("foo")),
-    singleton(tags$script("foo"))
-  ))
-
-  expect_identical(
-    renderTags(result3)$html,
-    HTML("<div>
-  <!--SHINY.SINGLETON[58b302d493b50acb75e4a5606687cadccdf902d8]-->
-  <script>foo</script>
-  <!--/SHINY.SINGLETON[58b302d493b50acb75e4a5606687cadccdf902d8]-->
-  <!--SHINY.SINGLETON[58b302d493b50acb75e4a5606687cadccdf902d8]-->
-  <script>foo</script>
-  <!--/SHINY.SINGLETON[58b302d493b50acb75e4a5606687cadccdf902d8]-->
-</div>")
-  )
-})
-
-test_that("Indenting can be controlled/suppressed", {
-  expect_identical(
-    renderTags(tags$div("a", "b"))$html,
-    HTML("<div>\n  a\n  b\n</div>")
-  )
-  expect_identical(
-    format(tags$div("a", "b")),
-    "<div>\n  a\n  b\n</div>"
-  )
-
-  expect_identical(
-    renderTags(tags$div("a", "b"), indent = 2)$html,
-    HTML("    <div>\n      a\n      b\n    </div>")
-  )
-  expect_identical(
-    format(tags$div("a", "b"), indent = 2),
-    "    <div>\n      a\n      b\n    </div>"
-  )
-
-  expect_identical(
-    renderTags(tags$div("a", "b"), indent = FALSE)$html,
-    HTML("<div>\na\nb\n</div>")
-  )
-  expect_identical(
-    format(tags$div("a", "b"), indent = FALSE),
-    "<div>\na\nb\n</div>"
-  )
-
-  expect_identical(
-    renderTags(tagList(tags$div("a", "b")), indent = FALSE)$html,
-    HTML("<div>\na\nb\n</div>")
-  )
-  expect_identical(
-    format(tagList(tags$div("a", "b")), indent = FALSE),
-    "<div>\na\nb\n</div>"
-  )
-})

inst/tests/test-url.R

@@ -17,4 +17,26 @@ test_that("Query string parsing", {
 
   # Should be the same with or without leading question mark
   expect_identical(parseQueryString("?foo=1&bar=b"), parseQueryString("foo=1&bar=b"))
+
+
+  # Nested and non-nested query strings
+  expect_identical(
+    parseQueryString("a[i1][j1]=x&b[i1][j1]=y&b[i2][j1]=z"),
+    list(
+      "a[i1][j1]" = "x",
+      "b[i1][j1]" = "y",
+      "b[i2][j1]" = "z"
+    )
+  )
+
+  expect_identical(
+    parseQueryString("a[i1][j1]=x&b[i1][j1]=y&b[i2][j1]=z", nested = TRUE),
+    list(
+      a = list(i1 = list(j1 = "x")),
+      b = list(
+        i1 = list(j1 = "y"),
+        i2 = list(j1 = "z")
+      )
+    )
+  )
 })

inst/tests/test-utils.R

@@ -0,0 +1,90 @@
+context("utils")
+
+test_that("Private randomness works at startup", {
+
+  if (exists(".Random.seed", envir = .GlobalEnv))
+    rm(".Random.seed", envir = .GlobalEnv)
+  .globals$ownSeed <- NULL
+  # Just make sure this doesn't blow up
+  createUniqueId(4)
+})
+
+test_that("Setting process-wide seed doesn't affect private randomness", {
+  set.seed(0)
+  id1 <- createUniqueId(4)
+  set.seed(0)
+  id2 <- createUniqueId(4)
+
+  expect_false(identical(id1, id2))
+})
+
+test_that("Resetting private seed doesn't result in dupes", {
+  .globals$ownSeed <- NULL
+  id3 <- createUniqueId(4)
+  # Make sure we let enough time pass that reinitializing the seed is
+  # going to result in a different value. This is especially required
+  # on Windows.
+  Sys.sleep(1)
+  set.seed(0)
+  .globals$ownSeed <- NULL
+  id4 <- createUniqueId(4)
+
+  expect_false(identical(id3, id4))
+})
+
+test_that("Clearing process-wide seed doesn't affect private randomness", {
+  set.seed(NULL)
+  id5 <- createUniqueId(4)
+  set.seed(NULL)
+  id6 <- createUniqueId(4)
+
+  expect_false(identical(id5, id6))
+})
+
+test_that("Setting the private seed explicitly results in identical values", {
+  set.seed(0)
+  .globals$ownSeed <- .Random.seed
+  id7 <- createUniqueId(4)
+  set.seed(0)
+  .globals$ownSeed <- .Random.seed
+  id8 <- createUniqueId(4)
+
+  expect_identical(id7, id8)
+})
+
+test_that("need() works as expected", {
+
+  # These are all falsy
+
+  expect_false(need(FALSE, FALSE))
+  expect_false(need(NULL, FALSE))
+  expect_false(need("", FALSE))
+
+  expect_false(need(character(0), FALSE))
+  expect_false(need(logical(0), FALSE))
+  expect_false(need(numeric(0), FALSE))
+  expect_false(need(integer(0), FALSE))
+  expect_false(need(complex(0), FALSE))
+  expect_false(need(matrix(), FALSE))
+
+  expect_false(need(NA, FALSE))
+  expect_false(need(NA_integer_, FALSE))
+  expect_false(need(NA_real_, FALSE))
+  expect_false(need(NA_complex_, FALSE))
+  expect_false(need(NA_character_, FALSE))
+
+  expect_false(need(c(NA, NA, FALSE), FALSE))
+  expect_false(need(c(FALSE), FALSE))
+
+  expect_false(need(try(stop("boom"), silent = TRUE), FALSE))
+
+  # These are all truthy
+
+  expect_null(need(0, FALSE))
+  expect_null(need(1:10, FALSE))
+  expect_null(need(LETTERS, FALSE))
+  expect_null(need("NA", FALSE))
+  expect_null(need(TRUE, FALSE))
+  expect_null(need(c(NA, NA, TRUE), FALSE))
+  expect_null(need(c(FALSE, FALSE, TRUE), FALSE))
+})

inst/www-dir/index.html

@@ -7,6 +7,7 @@
   <ul>
     <li><code>www/index.html</code></li>
     <li><code>ui.R</code></li>
+    <li><code>app.R</code></li>
   </ul>
 </body>
 </html>

inst/www/shared/bootstrap/css/bootstrap-theme.css

@@ -0,0 +1,470 @@
+/*!
+ * Bootstrap v3.3.1 (http://getbootstrap.com)
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ */
+
+.btn-default,
+.btn-primary,
+.btn-success,
+.btn-info,
+.btn-warning,
+.btn-danger {
+  text-shadow: 0 -1px 0 rgba(0, 0, 0, .2);
+  -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 1px rgba(0, 0, 0, .075);
+          box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 1px rgba(0, 0, 0, .075);
+}
+.btn-default:active,
+.btn-primary:active,
+.btn-success:active,
+.btn-info:active,
+.btn-warning:active,
+.btn-danger:active,
+.btn-default.active,
+.btn-primary.active,
+.btn-success.active,
+.btn-info.active,
+.btn-warning.active,
+.btn-danger.active {
+  -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+          box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+}
+.btn-default .badge,
+.btn-primary .badge,
+.btn-success .badge,
+.btn-info .badge,
+.btn-warning .badge,
+.btn-danger .badge {
+  text-shadow: none;
+}
+.btn:active,
+.btn.active {
+  background-image: none;
+}
+.btn-default {
+  text-shadow: 0 1px 0 #fff;
+  background-image: -webkit-linear-gradient(top, #fff 0%, #e0e0e0 100%);
+  background-image:      -o-linear-gradient(top, #fff 0%, #e0e0e0 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#fff), to(#e0e0e0));
+  background-image:         linear-gradient(to bottom, #fff 0%, #e0e0e0 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#ffe0e0e0', GradientType=0);
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+  background-repeat: repeat-x;
+  border-color: #dbdbdb;
+  border-color: #ccc;
+}
+.btn-default:hover,
+.btn-default:focus {
+  background-color: #e0e0e0;
+  background-position: 0 -15px;
+}
+.btn-default:active,
+.btn-default.active {
+  background-color: #e0e0e0;
+  border-color: #dbdbdb;
+}
+.btn-default:disabled,
+.btn-default[disabled] {
+  background-color: #e0e0e0;
+  background-image: none;
+}
+.btn-primary {
+  background-image: -webkit-linear-gradient(top, #337ab7 0%, #265a88 100%);
+  background-image:      -o-linear-gradient(top, #337ab7 0%, #265a88 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#265a88));
+  background-image:         linear-gradient(to bottom, #337ab7 0%, #265a88 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff265a88', GradientType=0);
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+  background-repeat: repeat-x;
+  border-color: #245580;
+}
+.btn-primary:hover,
+.btn-primary:focus {
+  background-color: #265a88;
+  background-position: 0 -15px;
+}
+.btn-primary:active,
+.btn-primary.active {
+  background-color: #265a88;
+  border-color: #245580;
+}
+.btn-primary:disabled,
+.btn-primary[disabled] {
+  background-color: #265a88;
+  background-image: none;
+}
+.btn-success {
+  background-image: -webkit-linear-gradient(top, #5cb85c 0%, #419641 100%);
+  background-image:      -o-linear-gradient(top, #5cb85c 0%, #419641 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#5cb85c), to(#419641));
+  background-image:         linear-gradient(to bottom, #5cb85c 0%, #419641 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5cb85c', endColorstr='#ff419641', GradientType=0);
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+  background-repeat: repeat-x;
+  border-color: #3e8f3e;
+}
+.btn-success:hover,
+.btn-success:focus {
+  background-color: #419641;
+  background-position: 0 -15px;
+}
+.btn-success:active,
+.btn-success.active {
+  background-color: #419641;
+  border-color: #3e8f3e;
+}
+.btn-success:disabled,
+.btn-success[disabled] {
+  background-color: #419641;
+  background-image: none;
+}
+.btn-info {
+  background-image: -webkit-linear-gradient(top, #5bc0de 0%, #2aabd2 100%);
+  background-image:      -o-linear-gradient(top, #5bc0de 0%, #2aabd2 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#5bc0de), to(#2aabd2));
+  background-image:         linear-gradient(to bottom, #5bc0de 0%, #2aabd2 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff2aabd2', GradientType=0);
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+  background-repeat: repeat-x;
+  border-color: #28a4c9;
+}
+.btn-info:hover,
+.btn-info:focus {
+  background-color: #2aabd2;
+  background-position: 0 -15px;
+}
+.btn-info:active,
+.btn-info.active {
+  background-color: #2aabd2;
+  border-color: #28a4c9;
+}
+.btn-info:disabled,
+.btn-info[disabled] {
+  background-color: #2aabd2;
+  background-image: none;
+}
+.btn-warning {
+  background-image: -webkit-linear-gradient(top, #f0ad4e 0%, #eb9316 100%);
+  background-image:      -o-linear-gradient(top, #f0ad4e 0%, #eb9316 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#f0ad4e), to(#eb9316));
+  background-image:         linear-gradient(to bottom, #f0ad4e 0%, #eb9316 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff0ad4e', endColorstr='#ffeb9316', GradientType=0);
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+  background-repeat: repeat-x;
+  border-color: #e38d13;
+}
+.btn-warning:hover,
+.btn-warning:focus {
+  background-color: #eb9316;
+  background-position: 0 -15px;
+}
+.btn-warning:active,
+.btn-warning.active {
+  background-color: #eb9316;
+  border-color: #e38d13;
+}
+.btn-warning:disabled,
+.btn-warning[disabled] {
+  background-color: #eb9316;
+  background-image: none;
+}
+.btn-danger {
+  background-image: -webkit-linear-gradient(top, #d9534f 0%, #c12e2a 100%);
+  background-image:      -o-linear-gradient(top, #d9534f 0%, #c12e2a 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#d9534f), to(#c12e2a));
+  background-image:         linear-gradient(to bottom, #d9534f 0%, #c12e2a 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9534f', endColorstr='#ffc12e2a', GradientType=0);
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+  background-repeat: repeat-x;
+  border-color: #b92c28;
+}
+.btn-danger:hover,
+.btn-danger:focus {
+  background-color: #c12e2a;
+  background-position: 0 -15px;
+}
+.btn-danger:active,
+.btn-danger.active {
+  background-color: #c12e2a;
+  border-color: #b92c28;
+}
+.btn-danger:disabled,
+.btn-danger[disabled] {
+  background-color: #c12e2a;
+  background-image: none;
+}
+.thumbnail,
+.img-thumbnail {
+  -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
+          box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
+}
+.dropdown-menu > li > a:hover,
+.dropdown-menu > li > a:focus {
+  background-color: #e8e8e8;
+  background-image: -webkit-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
+  background-image:      -o-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#f5f5f5), to(#e8e8e8));
+  background-image:         linear-gradient(to bottom, #f5f5f5 0%, #e8e8e8 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#ffe8e8e8', GradientType=0);
+  background-repeat: repeat-x;
+}
+.dropdown-menu > .active > a,
+.dropdown-menu > .active > a:hover,
+.dropdown-menu > .active > a:focus {
+  background-color: #2e6da4;
+  background-image: -webkit-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
+  background-image:      -o-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#2e6da4));
+  background-image:         linear-gradient(to bottom, #337ab7 0%, #2e6da4 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff2e6da4', GradientType=0);
+  background-repeat: repeat-x;
+}
+.navbar-default {
+  background-image: -webkit-linear-gradient(top, #fff 0%, #f8f8f8 100%);
+  background-image:      -o-linear-gradient(top, #fff 0%, #f8f8f8 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#fff), to(#f8f8f8));
+  background-image:         linear-gradient(to bottom, #fff 0%, #f8f8f8 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#fff8f8f8', GradientType=0);
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+  background-repeat: repeat-x;
+  border-radius: 4px;
+  -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 5px rgba(0, 0, 0, .075);
+          box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 5px rgba(0, 0, 0, .075);
+}
+.navbar-default .navbar-nav > .open > a,
+.navbar-default .navbar-nav > .active > a {
+  background-image: -webkit-linear-gradient(top, #dbdbdb 0%, #e2e2e2 100%);
+  background-image:      -o-linear-gradient(top, #dbdbdb 0%, #e2e2e2 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#dbdbdb), to(#e2e2e2));
+  background-image:         linear-gradient(to bottom, #dbdbdb 0%, #e2e2e2 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdbdbdb', endColorstr='#ffe2e2e2', GradientType=0);
+  background-repeat: repeat-x;
+  -webkit-box-shadow: inset 0 3px 9px rgba(0, 0, 0, .075);
+          box-shadow: inset 0 3px 9px rgba(0, 0, 0, .075);
+}
+.navbar-brand,
+.navbar-nav > li > a {
+  text-shadow: 0 1px 0 rgba(255, 255, 255, .25);
+}
+.navbar-inverse {
+  background-image: -webkit-linear-gradient(top, #3c3c3c 0%, #222 100%);
+  background-image:      -o-linear-gradient(top, #3c3c3c 0%, #222 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#3c3c3c), to(#222));
+  background-image:         linear-gradient(to bottom, #3c3c3c 0%, #222 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff3c3c3c', endColorstr='#ff222222', GradientType=0);
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+  background-repeat: repeat-x;
+}
+.navbar-inverse .navbar-nav > .open > a,
+.navbar-inverse .navbar-nav > .active > a {
+  background-image: -webkit-linear-gradient(top, #080808 0%, #0f0f0f 100%);
+  background-image:      -o-linear-gradient(top, #080808 0%, #0f0f0f 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#080808), to(#0f0f0f));
+  background-image:         linear-gradient(to bottom, #080808 0%, #0f0f0f 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff080808', endColorstr='#ff0f0f0f', GradientType=0);
+  background-repeat: repeat-x;
+  -webkit-box-shadow: inset 0 3px 9px rgba(0, 0, 0, .25);
+          box-shadow: inset 0 3px 9px rgba(0, 0, 0, .25);
+}
+.navbar-inverse .navbar-brand,
+.navbar-inverse .navbar-nav > li > a {
+  text-shadow: 0 -1px 0 rgba(0, 0, 0, .25);
+}
+.navbar-static-top,
+.navbar-fixed-top,
+.navbar-fixed-bottom {
+  border-radius: 0;
+}
+@media (max-width: 767px) {
+  .navbar .navbar-nav .open .dropdown-menu > .active > a,
+  .navbar .navbar-nav .open .dropdown-menu > .active > a:hover,
+  .navbar .navbar-nav .open .dropdown-menu > .active > a:focus {
+    color: #fff;
+    background-image: -webkit-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
+    background-image:      -o-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
+    background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#2e6da4));
+    background-image:         linear-gradient(to bottom, #337ab7 0%, #2e6da4 100%);
+    filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff2e6da4', GradientType=0);
+    background-repeat: repeat-x;
+  }
+}
+.alert {
+  text-shadow: 0 1px 0 rgba(255, 255, 255, .2);
+  -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .25), 0 1px 2px rgba(0, 0, 0, .05);
+          box-shadow: inset 0 1px 0 rgba(255, 255, 255, .25), 0 1px 2px rgba(0, 0, 0, .05);
+}
+.alert-success {
+  background-image: -webkit-linear-gradient(top, #dff0d8 0%, #c8e5bc 100%);
+  background-image:      -o-linear-gradient(top, #dff0d8 0%, #c8e5bc 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#dff0d8), to(#c8e5bc));
+  background-image:         linear-gradient(to bottom, #dff0d8 0%, #c8e5bc 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdff0d8', endColorstr='#ffc8e5bc', GradientType=0);
+  background-repeat: repeat-x;
+  border-color: #b2dba1;
+}
+.alert-info {
+  background-image: -webkit-linear-gradient(top, #d9edf7 0%, #b9def0 100%);
+  background-image:      -o-linear-gradient(top, #d9edf7 0%, #b9def0 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#d9edf7), to(#b9def0));
+  background-image:         linear-gradient(to bottom, #d9edf7 0%, #b9def0 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9edf7', endColorstr='#ffb9def0', GradientType=0);
+  background-repeat: repeat-x;
+  border-color: #9acfea;
+}
+.alert-warning {
+  background-image: -webkit-linear-gradient(top, #fcf8e3 0%, #f8efc0 100%);
+  background-image:      -o-linear-gradient(top, #fcf8e3 0%, #f8efc0 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#fcf8e3), to(#f8efc0));
+  background-image:         linear-gradient(to bottom, #fcf8e3 0%, #f8efc0 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffcf8e3', endColorstr='#fff8efc0', GradientType=0);
+  background-repeat: repeat-x;
+  border-color: #f5e79e;
+}
+.alert-danger {
+  background-image: -webkit-linear-gradient(top, #f2dede 0%, #e7c3c3 100%);
+  background-image:      -o-linear-gradient(top, #f2dede 0%, #e7c3c3 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#f2dede), to(#e7c3c3));
+  background-image:         linear-gradient(to bottom, #f2dede 0%, #e7c3c3 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff2dede', endColorstr='#ffe7c3c3', GradientType=0);
+  background-repeat: repeat-x;
+  border-color: #dca7a7;
+}
+.progress {
+  background-image: -webkit-linear-gradient(top, #ebebeb 0%, #f5f5f5 100%);
+  background-image:      -o-linear-gradient(top, #ebebeb 0%, #f5f5f5 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#ebebeb), to(#f5f5f5));
+  background-image:         linear-gradient(to bottom, #ebebeb 0%, #f5f5f5 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffebebeb', endColorstr='#fff5f5f5', GradientType=0);
+  background-repeat: repeat-x;
+}
+.progress-bar {
+  background-image: -webkit-linear-gradient(top, #337ab7 0%, #286090 100%);
+  background-image:      -o-linear-gradient(top, #337ab7 0%, #286090 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#286090));
+  background-image:         linear-gradient(to bottom, #337ab7 0%, #286090 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff286090', GradientType=0);
+  background-repeat: repeat-x;
+}
+.progress-bar-success {
+  background-image: -webkit-linear-gradient(top, #5cb85c 0%, #449d44 100%);
+  background-image:      -o-linear-gradient(top, #5cb85c 0%, #449d44 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#5cb85c), to(#449d44));
+  background-image:         linear-gradient(to bottom, #5cb85c 0%, #449d44 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5cb85c', endColorstr='#ff449d44', GradientType=0);
+  background-repeat: repeat-x;
+}
+.progress-bar-info {
+  background-image: -webkit-linear-gradient(top, #5bc0de 0%, #31b0d5 100%);
+  background-image:      -o-linear-gradient(top, #5bc0de 0%, #31b0d5 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#5bc0de), to(#31b0d5));
+  background-image:         linear-gradient(to bottom, #5bc0de 0%, #31b0d5 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff31b0d5', GradientType=0);
+  background-repeat: repeat-x;
+}
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+  background-image:      -o-linear-gradient(top, #f0ad4e 0%, #ec971f 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#f0ad4e), to(#ec971f));
+  background-image:         linear-gradient(to bottom, #f0ad4e 0%, #ec971f 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff0ad4e', endColorstr='#ffec971f', GradientType=0);
+  background-repeat: repeat-x;
+}
+.progress-bar-danger {
+  background-image: -webkit-linear-gradient(top, #d9534f 0%, #c9302c 100%);
+  background-image:      -o-linear-gradient(top, #d9534f 0%, #c9302c 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#d9534f), to(#c9302c));
+  background-image:         linear-gradient(to bottom, #d9534f 0%, #c9302c 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9534f', endColorstr='#ffc9302c', GradientType=0);
+  background-repeat: repeat-x;
+}
+.progress-bar-striped {
+  background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+  background-image:      -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
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+}
+.list-group {
+  border-radius: 4px;
+  -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
+          box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
+}
+.list-group-item.active,
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+  text-shadow: 0 -1px 0 #286090;
+  background-image: -webkit-linear-gradient(top, #337ab7 0%, #2b669a 100%);
+  background-image:      -o-linear-gradient(top, #337ab7 0%, #2b669a 100%);
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+  background-repeat: repeat-x;
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+}
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+.list-group-item.active:hover .badge,
+.list-group-item.active:focus .badge {
+  text-shadow: none;
+}
+.panel {
+  -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, .05);
+          box-shadow: 0 1px 2px rgba(0, 0, 0, .05);
+}
+.panel-default > .panel-heading {
+  background-image: -webkit-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
+  background-image:      -o-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
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+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#ffe8e8e8', GradientType=0);
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+}
+.panel-primary > .panel-heading {
+  background-image: -webkit-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
+  background-image:      -o-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#2e6da4));
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+  background-image: -webkit-linear-gradient(top, #dff0d8 0%, #d0e9c6 100%);
+  background-image:      -o-linear-gradient(top, #dff0d8 0%, #d0e9c6 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#dff0d8), to(#d0e9c6));
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+}
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+  background-image: -webkit-linear-gradient(top, #d9edf7 0%, #c4e3f3 100%);
+  background-image:      -o-linear-gradient(top, #d9edf7 0%, #c4e3f3 100%);
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+}
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+  background-image: -webkit-linear-gradient(top, #fcf8e3 0%, #faf2cc 100%);
+  background-image:      -o-linear-gradient(top, #fcf8e3 0%, #faf2cc 100%);
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+  background-image:         linear-gradient(to bottom, #fcf8e3 0%, #faf2cc 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffcf8e3', endColorstr='#fffaf2cc', GradientType=0);
+  background-repeat: repeat-x;
+}
+.panel-danger > .panel-heading {
+  background-image: -webkit-linear-gradient(top, #f2dede 0%, #ebcccc 100%);
+  background-image:      -o-linear-gradient(top, #f2dede 0%, #ebcccc 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#f2dede), to(#ebcccc));
+  background-image:         linear-gradient(to bottom, #f2dede 0%, #ebcccc 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff2dede', endColorstr='#ffebcccc', GradientType=0);
+  background-repeat: repeat-x;
+}
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+  background-image: -webkit-linear-gradient(top, #e8e8e8 0%, #f5f5f5 100%);
+  background-image:      -o-linear-gradient(top, #e8e8e8 0%, #f5f5f5 100%);
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#e8e8e8), to(#f5f5f5));
+  background-image:         linear-gradient(to bottom, #e8e8e8 0%, #f5f5f5 100%);
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffe8e8e8', endColorstr='#fff5f5f5', GradientType=0);
+  background-repeat: repeat-x;
+  border-color: #dcdcdc;
+  -webkit-box-shadow: inset 0 1px 3px rgba(0, 0, 0, .05), 0 1px 0 rgba(255, 255, 255, .1);
+          box-shadow: inset 0 1px 3px rgba(0, 0, 0, .05), 0 1px 0 rgba(255, 255, 255, .1);
+}
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inst/www/shared/bootstrap/shim/html5shiv.min.js

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+/**
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+// Only run this code in IE 8
+if (!!window.navigator.userAgent.match("MSIE 8")) {
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+};

inst/www/shared/bootstrap/shim/respond.min.js

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+/*! Respond.js v1.4.2: min/max-width media query polyfill * Copyright 2013 Scott Jehl
+ * Licensed under https://github.com/scottjehl/Respond/blob/master/LICENSE-MIT
+ *  */
+
+// Only run this code in IE 8
+if (!!window.navigator.userAgent.match("MSIE 8")) {
+!function(a){"use strict";a.matchMedia=a.matchMedia||function(a){var b,c=a.documentElement,d=c.firstElementChild||c.firstChild,e=a.createElement("body"),f=a.createElement("div");return f.id="mq-test-1",f.style.cssText="position:absolute;top:-100em",e.style.background="none",e.appendChild(f),function(a){return f.innerHTML='&shy;<style media="'+a+'"> #mq-test-1 { width: 42px; }</style>',c.insertBefore(e,d),b=42===f.offsetWidth,c.removeChild(e),{matches:b,media:a}}}(a.document)}(this),function(a){"use strict";function b(){u(!0)}var c={};a.respond=c,c.update=function(){};var d=[],e=function(){var b=!1;try{b=new a.XMLHttpRequest}catch(c){b=new a.ActiveXObject("Microsoft.XMLHTTP")}return function(){return b}}(),f=function(a,b){var c=e();c&&(c.open("GET",a,!0),c.onreadystatechange=function(){4!==c.readyState||200!==c.status&&304!==c.status||b(c.responseText)},4!==c.readyState&&c.send(null))};if(c.ajax=f,c.queue=d,c.regex={media:/@media[^\{]+\{([^\{\}]*\{[^\}\{]*\})+/gi,keyframes:/@(?:\-(?:o|moz|webkit)\-)?keyframes[^\{]+\{(?:[^\{\}]*\{[^\}\{]*\})+[^\}]*\}/gi,urls:/(url\()['"]?([^\/\)'"][^:\)'"]+)['"]?(\))/g,findStyles:/@media *([^\{]+)\{([\S\s]+?)$/,only:/(only\s+)?([a-zA-Z]+)\s?/,minw:/\([\s]*min\-width\s*:[\s]*([\s]*[0-9\.]+)(px|em)[\s]*\)/,maxw:/\([\s]*max\-width\s*:[\s]*([\s]*[0-9\.]+)(px|em)[\s]*\)/},c.mediaQueriesSupported=a.matchMedia&&null!==a.matchMedia("only all")&&a.matchMedia("only all").matches,!c.mediaQueriesSupported){var g,h,i,j=a.document,k=j.documentElement,l=[],m=[],n=[],o={},p=30,q=j.getElementsByTagName("head")[0]||k,r=j.getElementsByTagName("base")[0],s=q.getElementsByTagName("link"),t=function(){var a,b=j.createElement("div"),c=j.body,d=k.style.fontSize,e=c&&c.style.fontSize,f=!1;return b.style.cssText="position:absolute;font-size:1em;width:1em",c||(c=f=j.createElement("body"),c.style.background="none"),k.style.fontSize="100%",c.style.fontSize="100%",c.appendChild(b),f&&k.insertBefore(c,k.firstChild),a=b.offsetWidth,f?k.removeChild(c):c.removeChild(b),k.style.fontSize=d,e&&(c.style.fontSize=e),a=i=parseFloat(a)},u=function(b){var c="clientWidth",d=k[c],e="CSS1Compat"===j.compatMode&&d||j.body[c]||d,f={},o=s[s.length-1],r=(new Date).getTime();if(b&&g&&p>r-g)return a.clearTimeout(h),h=a.setTimeout(u,p),void 0;g=r;for(var v in l)if(l.hasOwnProperty(v)){var w=l[v],x=w.minw,y=w.maxw,z=null===x,A=null===y,B="em";x&&(x=parseFloat(x)*(x.indexOf(B)>-1?i||t():1)),y&&(y=parseFloat(y)*(y.indexOf(B)>-1?i||t():1)),w.hasquery&&(z&&A||!(z||e>=x)||!(A||y>=e))||(f[w.media]||(f[w.media]=[]),f[w.media].push(m[w.rules]))}for(var C in n)n.hasOwnProperty(C)&&n[C]&&n[C].parentNode===q&&q.removeChild(n[C]);n.length=0;for(var D in f)if(f.hasOwnProperty(D)){var E=j.createElement("style"),F=f[D].join("\n");E.type="text/css",E.media=D,q.insertBefore(E,o.nextSibling),E.styleSheet?E.styleSheet.cssText=F:E.appendChild(j.createTextNode(F)),n.push(E)}},v=function(a,b,d){var e=a.replace(c.regex.keyframes,"").match(c.regex.media),f=e&&e.length||0;b=b.substring(0,b.lastIndexOf("/"));var g=function(a){return a.replace(c.regex.urls,"$1"+b+"$2$3")},h=!f&&d;b.length&&(b+="/"),h&&(f=1);for(var i=0;f>i;i++){var j,k,n,o;h?(j=d,m.push(g(a))):(j=e[i].match(c.regex.findStyles)&&RegExp.$1,m.push(RegExp.$2&&g(RegExp.$2))),n=j.split(","),o=n.length;for(var p=0;o>p;p++)k=n[p],l.push({media:k.split("(")[0].match(c.regex.only)&&RegExp.$2||"all",rules:m.length-1,hasquery:k.indexOf("(")>-1,minw:k.match(c.regex.minw)&&parseFloat(RegExp.$1)+(RegExp.$2||""),maxw:k.match(c.regex.maxw)&&parseFloat(RegExp.$1)+(RegExp.$2||"")})}u()},w=function(){if(d.length){var b=d.shift();f(b.href,function(c){v(c,b.href,b.media),o[b.href]=!0,a.setTimeout(function(){w()},0)})}},x=function(){for(var b=0;b<s.length;b++){var c=s[b],e=c.href,f=c.media,g=c.rel&&"stylesheet"===c.rel.toLowerCase();e&&g&&!o[e]&&(c.styleSheet&&c.styleSheet.rawCssText?(v(c.styleSheet.rawCssText,e,f),o[e]=!0):(!/^([a-zA-Z:]*\/\/)/.test(e)&&!r||e.replace(RegExp.$1,"").split("/")[0]===a.location.host)&&("//"===e.substring(0,2)&&(e=a.location.protocol+e),d.push({href:e,media:f})))}w()};x(),c.update=x,c.getEmValue=t,a.addEventListener?a.addEventListener("resize",b,!1):a.attachEvent&&a.attachEvent("onresize",b)}}(this);
+};

inst/www/shared/datatables/css/DT_bootstrap.css

@@ -1,123 +0,0 @@
-
-div.dataTables_length label {
-	float: left;
-	text-align: left;
-}
-
-div.dataTables_length select {
-	width: 75px;
-}
-
-div.dataTables_filter label {
-	float: right;
-}
-
-div.dataTables_info {
-	padding-top: 8px;
-}
-
-div.dataTables_paginate {
-	float: right;
-	margin: 0;
-}
-
-table.table {
-	clear: both;
-	margin-bottom: 6px !important;
-	max-width: none !important;
-}
-
-table.table thead .sorting,
-table.table thead .sorting_asc,
-table.table thead .sorting_desc,
-table.table thead .sorting_asc_disabled,
-table.table thead .sorting_desc_disabled {
-	cursor: pointer;
-	*cursor: hand;
-}
-
-table.table thead .sorting { background: url('images/sort_both.png') no-repeat center right; }
-table.table thead .sorting_asc { background: url('images/sort_asc.png') no-repeat center right; }
-table.table thead .sorting_desc { background: url('images/sort_desc.png') no-repeat center right; }
-
-table.table thead .sorting_asc_disabled { background: url('images/sort_asc_disabled.png') no-repeat center right; }
-table.table thead .sorting_desc_disabled { background: url('images/sort_desc_disabled.png') no-repeat center right; }
-
-table.dataTable th:active {
-	outline: none;
-}
-
-table.dataTable tr.odd td.sorting_1 { background-color: #D3D6FF; }
-table.dataTable tr.odd td.sorting_2 { background-color: #DADCFF; }
-table.dataTable tr.odd td.sorting_3 { background-color: #E0E2FF; }
-table.dataTable tr.even td.sorting_1 { background-color: #EAEBFF; }
-table.dataTable tr.even td.sorting_2 { background-color: #F2F3FF; }
-table.dataTable tr.even td.sorting_3 { background-color: #F9F9FF; }
-
-/* Scrolling */
-div.dataTables_scrollHead table {
-	margin-bottom: 0 !important;
-	border-bottom-left-radius: 0;
-	border-bottom-right-radius: 0;
-}
-
-div.dataTables_scrollHead table thead tr:last-child th:first-child,
-div.dataTables_scrollHead table thead tr:last-child td:first-child {
-	border-bottom-left-radius: 0 !important;
-	border-bottom-right-radius: 0 !important;
-}
-
-div.dataTables_scrollBody table {
-	border-top: none;
-	margin-bottom: 0 !important;
-}
-
-div.dataTables_scrollBody tbody tr:first-child th,
-div.dataTables_scrollBody tbody tr:first-child td {
-	border-top: none;
-}
-
-div.dataTables_scrollFoot table {
-	border-top: none;
-}
-
-/* Active rows */
-
-.table tbody tr.active td,
-.table tbody tr.active th {
-	background-color: #08C;
-	color: white;
-}
-
-.table tbody tr.active:hover td,
-.table tbody tr.active:hover th {
-	background-color: #0075b0 !important;
-}
-
-.table-striped tbody tr.active:nth-child(odd) td,
-.table-striped tbody tr.active:nth-child(odd) th {
-	background-color: #017ebc;
-}
-
-/* Processing indicator */
-
-.dataTables_processing {
-	position: absolute;
-	top: 50%;
-	left: 50%;
-	width: 250px;
-	height: 30px;
-	margin-left: -125px;
-	margin-top: -15px;
-	padding: 14px 0 2px 0;
-	border: 1px solid #ddd;
-	text-align: center;
-	color: #999;
-	font-size: 14px;
-	background-color: white;
-}
-
-/* Search boxes in the footer */
-table tfoot input {
-  width: 100%;
-}

inst/www/shared/datatables/css/dataTables.bootstrap.css

@@ -0,0 +1,319 @@
+div.dataTables_length label {
+	font-weight: normal;
+	text-align: left;
+	white-space: nowrap;
+}
+
+div.dataTables_length select {
+	width: 75px;
+	display: inline-block;
+}
+
+div.dataTables_filter {
+	text-align: right;
+}
+
+div.dataTables_filter label {
+	font-weight: normal;
+	white-space: nowrap;
+	text-align: left;
+}
+
+div.dataTables_filter input {
+	margin-left: 0.5em;
+	display: inline-block;
+}
+
+div.dataTables_info {
+	padding-top: 8px;
+	white-space: nowrap;
+}
+
+div.dataTables_paginate {
+	margin: 0;
+	white-space: nowrap;
+	text-align: right;
+}
+
+div.dataTables_paginate ul.pagination {
+	margin: 2px 0;
+	white-space: nowrap;
+}
+
+@media screen and (max-width: 767px) {
+	div.dataTables_length,
+	div.dataTables_filter,
+	div.dataTables_info,
+	div.dataTables_paginate {
+		text-align: center;
+	}
+}
+
+
+table.dataTable td,
+table.dataTable th {
+	-webkit-box-sizing: content-box;
+	-moz-box-sizing: content-box;
+	box-sizing: content-box;
+}
+
+
+table.dataTable {
+	clear: both;
+	margin-top: 6px !important;
+	margin-bottom: 6px !important;
+	max-width: none !important;
+}
+
+table.dataTable thead .sorting,
+table.dataTable thead .sorting_asc,
+table.dataTable thead .sorting_desc,
+table.dataTable thead .sorting_asc_disabled,
+table.dataTable thead .sorting_desc_disabled {
+	cursor: pointer;
+}
+
+table.dataTable thead .sorting { background: url('../images/sort_both.png') no-repeat center right; }
+table.dataTable thead .sorting_asc { background: url('../images/sort_asc.png') no-repeat center right; }
+table.dataTable thead .sorting_desc { background: url('../images/sort_desc.png') no-repeat center right; }
+
+table.dataTable thead .sorting_asc_disabled { background: url('../images/sort_asc_disabled.png') no-repeat center right; }
+table.dataTable thead .sorting_desc_disabled { background: url('../images/sort_desc_disabled.png') no-repeat center right; }
+
+table.dataTable thead > tr > th {
+	padding-left: 18px;
+	padding-right: 18px;
+}
+
+table.dataTable th:active {
+	outline: none;
+}
+
+/* Scrolling */
+div.dataTables_scrollHead table {
+	margin-bottom: 0 !important;
+	border-bottom-left-radius: 0;
+	border-bottom-right-radius: 0;
+}
+
+div.dataTables_scrollHead table thead tr:last-child th:first-child,
+div.dataTables_scrollHead table thead tr:last-child td:first-child {
+	border-bottom-left-radius: 0 !important;
+	border-bottom-right-radius: 0 !important;
+}
+
+div.dataTables_scrollBody table {
+	border-top: none;
+	margin-top: 0 !important;
+	margin-bottom: 0 !important;
+}
+
+div.dataTables_scrollBody tbody tr:first-child th,
+div.dataTables_scrollBody tbody tr:first-child td {
+	border-top: none;
+}
+
+div.dataTables_scrollFoot table {
+	margin-top: 0 !important;
+	border-top: none;
+}
+
+/* Frustratingly the border-collapse:collapse used by Bootstrap makes the column
+   width calculations when using scrolling impossible to align columns. We have
+   to use separate
+ */
+table.table-bordered.dataTable {
+	border-collapse: separate !important;
+}
+table.table-bordered thead th,
+table.table-bordered thead td {
+	border-left-width: 0;
+	border-top-width: 0;
+}
+table.table-bordered tbody th,
+table.table-bordered tbody td {
+	border-left-width: 0;
+	border-bottom-width: 0;
+}
+table.table-bordered th:last-child,
+table.table-bordered td:last-child {
+	border-right-width: 0;
+}
+div.dataTables_scrollHead table.table-bordered {
+	border-bottom-width: 0;
+}
+
+
+
+
+/*
+ * TableTools styles
+ */
+.table.dataTable tbody tr.active td,
+.table.dataTable tbody tr.active th {
+	background-color: #08C;
+	color: white;
+}
+
+.table.dataTable tbody tr.active:hover td,
+.table.dataTable tbody tr.active:hover th {
+	background-color: #0075b0 !important;
+}
+
+.table.dataTable tbody tr.active th > a,
+.table.dataTable tbody tr.active td > a {
+	color: white;
+}
+
+.table-striped.dataTable tbody tr.active:nth-child(odd) td,
+.table-striped.dataTable tbody tr.active:nth-child(odd) th {
+	background-color: #017ebc;
+}
+
+table.DTTT_selectable tbody tr {
+	cursor: pointer;
+}
+
+div.DTTT .btn {
+	color: #333 !important;
+	font-size: 12px;
+}
+
+div.DTTT .btn:hover {
+	text-decoration: none !important;
+}
+
+ul.DTTT_dropdown.dropdown-menu {
+  z-index: 2003;
+}
+
+ul.DTTT_dropdown.dropdown-menu a {
+	color: #333 !important; /* needed only when demo_page.css is included */
+}
+
+ul.DTTT_dropdown.dropdown-menu li {
+	position: relative;
+}
+
+ul.DTTT_dropdown.dropdown-menu li:hover a {
+	background-color: #0088cc;
+	color: white !important;
+}
+
+div.DTTT_collection_background {
+	z-index: 2002;	
+}
+
+/* TableTools information display */
+div.DTTT_print_info {
+	position: fixed;
+	top: 50%;
+	left: 50%;
+	width: 400px;
+	height: 150px;
+	margin-left: -200px;
+	margin-top: -75px;
+	text-align: center;
+	color: #333;
+	padding: 10px 30px;
+	opacity: 0.95;
+
+	background-color: white;
+	border: 1px solid rgba(0, 0, 0, 0.2);
+	border-radius: 6px;
+	
+	-webkit-box-shadow: 0 3px 7px rgba(0, 0, 0, 0.5);
+	        box-shadow: 0 3px 7px rgba(0, 0, 0, 0.5);
+}
+
+div.DTTT_print_info h6 {
+	font-weight: normal;
+	font-size: 28px;
+	line-height: 28px;
+	margin: 1em;
+}
+
+div.DTTT_print_info p {
+	font-size: 14px;
+	line-height: 20px;
+}
+
+div.dataTables_processing {
+    position: absolute;
+    top: 50%;
+    left: 50%;
+    width: 100%;
+    height: 60px;
+    margin-left: -50%;
+    margin-top: -25px;
+    padding-top: 20px;
+    padding-bottom: 20px;
+    text-align: center;
+    font-size: 1.2em;
+    background-color: white;
+    background: -webkit-gradient(linear, left top, right top, color-stop(0%, rgba(255,255,255,0)), color-stop(25%, rgba(255,255,255,0.9)), color-stop(75%, rgba(255,255,255,0.9)), color-stop(100%, rgba(255,255,255,0)));
+    background: -webkit-linear-gradient(left, rgba(255,255,255,0) 0%, rgba(255,255,255,0.9) 25%, rgba(255,255,255,0.9) 75%, rgba(255,255,255,0) 100%);
+    background: -moz-linear-gradient(left, rgba(255,255,255,0) 0%, rgba(255,255,255,0.9) 25%, rgba(255,255,255,0.9) 75%, rgba(255,255,255,0) 100%);
+    background: -ms-linear-gradient(left, rgba(255,255,255,0) 0%, rgba(255,255,255,0.9) 25%, rgba(255,255,255,0.9) 75%, rgba(255,255,255,0) 100%);
+    background: -o-linear-gradient(left, rgba(255,255,255,0) 0%, rgba(255,255,255,0.9) 25%, rgba(255,255,255,0.9) 75%, rgba(255,255,255,0) 100%);
+    background: linear-gradient(to right, rgba(255,255,255,0) 0%, rgba(255,255,255,0.9) 25%, rgba(255,255,255,0.9) 75%, rgba(255,255,255,0) 100%);
+}
+
+
+
+/*
+ * FixedColumns styles
+ */
+div.DTFC_LeftHeadWrapper table,
+div.DTFC_LeftFootWrapper table,
+div.DTFC_RightHeadWrapper table,
+div.DTFC_RightFootWrapper table,
+table.DTFC_Cloned tr.even {
+    background-color: white;
+    margin-bottom: 0;
+}
+ 
+div.DTFC_RightHeadWrapper table ,
+div.DTFC_LeftHeadWrapper table {
+	border-bottom: none !important;
+    margin-bottom: 0 !important;
+    border-top-right-radius: 0 !important;
+    border-bottom-left-radius: 0 !important;
+    border-bottom-right-radius: 0 !important;
+}
+ 
+div.DTFC_RightHeadWrapper table thead tr:last-child th:first-child,
+div.DTFC_RightHeadWrapper table thead tr:last-child td:first-child,
+div.DTFC_LeftHeadWrapper table thead tr:last-child th:first-child,
+div.DTFC_LeftHeadWrapper table thead tr:last-child td:first-child {
+    border-bottom-left-radius: 0 !important;
+    border-bottom-right-radius: 0 !important;
+}
+ 
+div.DTFC_RightBodyWrapper table,
+div.DTFC_LeftBodyWrapper table {
+    border-top: none;
+    margin: 0 !important;
+}
+ 
+div.DTFC_RightBodyWrapper tbody tr:first-child th,
+div.DTFC_RightBodyWrapper tbody tr:first-child td,
+div.DTFC_LeftBodyWrapper tbody tr:first-child th,
+div.DTFC_LeftBodyWrapper tbody tr:first-child td {
+    border-top: none;
+}
+ 
+div.DTFC_RightFootWrapper table,
+div.DTFC_LeftFootWrapper table {
+    border-top: none;
+    margin-top: 0 !important;
+}
+
+
+/*
+ * FixedHeader styles
+ */
+div.FixedHeader_Cloned table {
+	margin: 0 !important
+}
+

inst/www/shared/datatables/css/dataTables.extra.css

@@ -0,0 +1,30 @@
+/* Sorting */
+table.dataTable tr.odd td.sorting_1 { background-color: #D3D6FF; }
+table.dataTable tr.odd td.sorting_2 { background-color: #DADCFF; }
+table.dataTable tr.odd td.sorting_3 { background-color: #E0E2FF; }
+table.dataTable tr.even td.sorting_1 { background-color: #EAEBFF; }
+table.dataTable tr.even td.sorting_2 { background-color: #F2F3FF; }
+table.dataTable tr.even td.sorting_3 { background-color: #F9F9FF; }
+
+table.dataTable tr.odd td.sorting_1 { background-color: #D3D6FF; }
+table.dataTable tr.odd td.sorting_2 { background-color: #DADCFF; }
+table.dataTable tr.odd td.sorting_3 { background-color: #E0E2FF; }
+table.dataTable tr.even td.sorting_1 { background-color: #EAEBFF; }
+table.dataTable tr.even td.sorting_2 { background-color: #F2F3FF; }
+table.dataTable tr.even td.sorting_3 { background-color: #F9F9FF; }
+
+/* Selected rows */
+table.dataTable tbody tr.selected,
+table.dataTable tr.selected td.sorting_1,
+table.dataTable tr.selected td.sorting_2,
+table.dataTable tr.selected td.sorting_3,
+.table-striped tbody>tr.selected:nth-child(odd)>td,
+.table-striped tbody>tr.selected:nth-child(even)>td {
+  background-color: #b0bed9;
+}
+
+/* Search boxes in the footer */
+table tfoot input {
+  width: 100%;
+}
+

inst/www/shared/datatables/js/DT_bootstrap.js

@@ -1,109 +0,0 @@
-/* Set the defaults for DataTables initialisation */
-$.extend( true, $.fn.dataTable.defaults, {
-	"sDom": "<'row-fluid'<'span6'l><'span6'f>r>t<'row-fluid'<'span6'i><'span6'p>>",
-	"sPaginationType": "bootstrap",
-	"oLanguage": {
-		"sLengthMenu": "_MENU_ records per page"
-	}
-} );
-
-
-/* Default class modification */
-$.extend( $.fn.dataTableExt.oStdClasses, {
-	"sWrapper": "dataTables_wrapper form-inline"
-} );
-
-
-/* API method to get paging information */
-$.fn.dataTableExt.oApi.fnPagingInfo = function ( oSettings )
-{
-	return {
-		"iStart":         oSettings._iDisplayStart,
-		"iEnd":           oSettings.fnDisplayEnd(),
-		"iLength":        oSettings._iDisplayLength,
-		"iTotal":         oSettings.fnRecordsTotal(),
-		"iFilteredTotal": oSettings.fnRecordsDisplay(),
-		"iPage":          oSettings._iDisplayLength === -1 ?
-			0 : Math.ceil( oSettings._iDisplayStart / oSettings._iDisplayLength ),
-		"iTotalPages":    oSettings._iDisplayLength === -1 ?
-			0 : Math.ceil( oSettings.fnRecordsDisplay() / oSettings._iDisplayLength )
-	};
-};
-
-
-/* Bootstrap style pagination control */
-$.extend( $.fn.dataTableExt.oPagination, {
-	"bootstrap": {
-		"fnInit": function( oSettings, nPaging, fnDraw ) {
-			var oLang = oSettings.oLanguage.oPaginate;
-			var fnClickHandler = function ( e ) {
-				e.preventDefault();
-				if ( oSettings.oApi._fnPageChange(oSettings, e.data.action) ) {
-					fnDraw( oSettings );
-				}
-			};
-
-			$(nPaging).addClass('pagination').append(
-				'<ul>'+
-					'<li class="prev disabled"><a href="#">&larr; '+oLang.sPrevious+'</a></li>'+
-					'<li class="next disabled"><a href="#">'+oLang.sNext+' &rarr; </a></li>'+
-				'</ul>'
-			);
-			var els = $('a', nPaging);
-			$(els[0]).bind( 'click.DT', { action: "previous" }, fnClickHandler );
-			$(els[1]).bind( 'click.DT', { action: "next" }, fnClickHandler );
-		},
-
-		"fnUpdate": function ( oSettings, fnDraw ) {
-			var iListLength = 5;
-			var oPaging = oSettings.oInstance.fnPagingInfo();
-			var an = oSettings.aanFeatures.p;
-			var i, ien, j, sClass, iStart, iEnd, iHalf=Math.floor(iListLength/2);
-
-			if ( oPaging.iTotalPages < iListLength) {
-				iStart = 1;
-				iEnd = oPaging.iTotalPages;
-			}
-			else if ( oPaging.iPage <= iHalf ) {
-				iStart = 1;
-				iEnd = iListLength;
-			} else if ( oPaging.iPage >= (oPaging.iTotalPages-iHalf) ) {
-				iStart = oPaging.iTotalPages - iListLength + 1;
-				iEnd = oPaging.iTotalPages;
-			} else {
-				iStart = oPaging.iPage - iHalf + 1;
-				iEnd = iStart + iListLength - 1;
-			}
-
-			for ( i=0, ien=an.length ; i<ien ; i++ ) {
-				// Remove the middle elements
-				$('li:gt(0)', an[i]).filter(':not(:last)').remove();
-
-				// Add the new list items and their event handlers
-				for ( j=iStart ; j<=iEnd ; j++ ) {
-					sClass = (j==oPaging.iPage+1) ? 'class="active"' : '';
-					$('<li '+sClass+'><a href="#">'+j+'</a></li>')
-						.insertBefore( $('li:last', an[i])[0] )
-						.bind('click', function (e) {
-							e.preventDefault();
-							oSettings._iDisplayStart = (parseInt($('a', this).text(),10)-1) * oPaging.iLength;
-							fnDraw( oSettings );
-						} );
-				}
-
-				// Add / remove disabled classes from the static elements
-				if ( oPaging.iPage === 0 ) {
-					$('li:first', an[i]).addClass('disabled');
-				} else {
-					$('li:first', an[i]).removeClass('disabled');
-				}
-
-				if ( oPaging.iPage === oPaging.iTotalPages-1 || oPaging.iTotalPages === 0 ) {
-					$('li:last', an[i]).addClass('disabled');
-				} else {
-					$('li:last', an[i]).removeClass('disabled');
-				}
-			}
-		}
-	}
-} );

inst/www/shared/datatables/js/dataTables.bootstrap.js

@@ -0,0 +1,186 @@
+/*! DataTables Bootstrap 3 integration
+ * ©2011-2014 SpryMedia Ltd - datatables.net/license
+ */
+
+/**
+ * DataTables integration for Bootstrap 3. This requires Bootstrap 3 and
+ * DataTables 1.10 or newer.
+ *
+ * This file sets the defaults and adds options to DataTables to style its
+ * controls using Bootstrap. See http://datatables.net/manual/styling/bootstrap
+ * for further information.
+ */
+(function(window, document, undefined){
+
+var factory = function( $, DataTable ) {
+"use strict";
+
+
+/* Set the defaults for DataTables initialisation */
+$.extend( true, DataTable.defaults, {
+	dom:
+		"<'row'<'col-sm-6'l><'col-sm-6'f>>" +
+		"<'row'<'col-sm-12'tr>>" +
+		"<'row'<'col-sm-6'i><'col-sm-6'p>>",
+	renderer: 'bootstrap'
+} );
+
+
+/* Default class modification */
+$.extend( DataTable.ext.classes, {
+	sWrapper:      "dataTables_wrapper form-inline dt-bootstrap",
+	sFilterInput:  "form-control input-sm",
+	sLengthSelect: "form-control input-sm"
+} );
+
+
+/* Bootstrap paging button renderer */
+DataTable.ext.renderer.pageButton.bootstrap = function ( settings, host, idx, buttons, page, pages ) {
+	var api     = new DataTable.Api( settings );
+	var classes = settings.oClasses;
+	var lang    = settings.oLanguage.oPaginate;
+	var btnDisplay, btnClass;
+
+	var attach = function( container, buttons ) {
+		var i, ien, node, button;
+		var clickHandler = function ( e ) {
+			e.preventDefault();
+			if ( !$(e.currentTarget).hasClass('disabled') ) {
+				api.page( e.data.action ).draw( false );
+			}
+		};
+
+		for ( i=0, ien=buttons.length ; i<ien ; i++ ) {
+			button = buttons[i];
+
+			if ( $.isArray( button ) ) {
+				attach( container, button );
+			}
+			else {
+				btnDisplay = '';
+				btnClass = '';
+
+				switch ( button ) {
+					case 'ellipsis':
+						btnDisplay = '&hellip;';
+						btnClass = 'disabled';
+						break;
+
+					case 'first':
+						btnDisplay = lang.sFirst;
+						btnClass = button + (page > 0 ?
+							'' : ' disabled');
+						break;
+
+					case 'previous':
+						btnDisplay = lang.sPrevious;
+						btnClass = button + (page > 0 ?
+							'' : ' disabled');
+						break;
+
+					case 'next':
+						btnDisplay = lang.sNext;
+						btnClass = button + (page < pages-1 ?
+							'' : ' disabled');
+						break;
+
+					case 'last':
+						btnDisplay = lang.sLast;
+						btnClass = button + (page < pages-1 ?
+							'' : ' disabled');
+						break;
+
+					default:
+						btnDisplay = button + 1;
+						btnClass = page === button ?
+							'active' : '';
+						break;
+				}
+
+				if ( btnDisplay ) {
+					node = $('<li>', {
+							'class': classes.sPageButton+' '+btnClass,
+							'aria-controls': settings.sTableId,
+							'tabindex': settings.iTabIndex,
+							'id': idx === 0 && typeof button === 'string' ?
+								settings.sTableId +'_'+ button :
+								null
+						} )
+						.append( $('<a>', {
+								'href': '#'
+							} )
+							.html( btnDisplay )
+						)
+						.appendTo( container );
+
+					settings.oApi._fnBindAction(
+						node, {action: button}, clickHandler
+					);
+				}
+			}
+		}
+	};
+
+	attach(
+		$(host).empty().html('<ul class="pagination"/>').children('ul'),
+		buttons
+	);
+};
+
+
+/*
+ * TableTools Bootstrap compatibility
+ * Required TableTools 2.1+
+ */
+if ( DataTable.TableTools ) {
+	// Set the classes that TableTools uses to something suitable for Bootstrap
+	$.extend( true, DataTable.TableTools.classes, {
+		"container": "DTTT btn-group",
+		"buttons": {
+			"normal": "btn btn-default",
+			"disabled": "disabled"
+		},
+		"collection": {
+			"container": "DTTT_dropdown dropdown-menu",
+			"buttons": {
+				"normal": "",
+				"disabled": "disabled"
+			}
+		},
+		"print": {
+			"info": "DTTT_print_info"
+		},
+		"select": {
+			"row": "active"
+		}
+	} );
+
+	// Have the collection use a bootstrap compatible drop down
+	$.extend( true, DataTable.TableTools.DEFAULTS.oTags, {
+		"collection": {
+			"container": "ul",
+			"button": "li",
+			"liner": "a"
+		}
+	} );
+}
+
+}; // /factory
+
+
+// Define as an AMD module if possible
+if ( typeof define === 'function' && define.amd ) {
+	define( ['jquery', 'datatables'], factory );
+}
+else if ( typeof exports === 'object' ) {
+    // Node/CommonJS
+    factory( require('jquery'), require('datatables') );
+}
+else if ( jQuery ) {
+	// Otherwise simply initialise as normal, stopping multiple evaluation
+	factory( jQuery, jQuery.fn.dataTable );
+}
+
+
+})(window, document);
+

inst/www/shared/datatables/js/jquery.dataTables.min.js

@@ -1,155 +1,157 @@
-/*
- * File:        jquery.dataTables.min.js
- * Version:     1.9.4
- * Author:      Allan Jardine (www.sprymedia.co.uk)
- * Info:        www.datatables.net
- * 
- * Copyright 2008-2012 Allan Jardine, all rights reserved.
- *
- * This source file is free software, under either the GPL v2 license or a
- * BSD style license, available at:
- *   http://datatables.net/license_gpl2
- *   http://datatables.net/license_bsd
- * 
- * This source file is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY 
- * or FITNESS FOR A PARTICULAR PURPOSE. See the license files for details.
+/*! DataTables 1.10.4
+ * ©2008-2014 SpryMedia Ltd - datatables.net/license
  */
-(function(X,l,n){var L=function(h){var j=function(e){function o(a,b){var c=j.defaults.columns,d=a.aoColumns.length,c=h.extend({},j.models.oColumn,c,{sSortingClass:a.oClasses.sSortable,sSortingClassJUI:a.oClasses.sSortJUI,nTh:b?b:l.createElement("th"),sTitle:c.sTitle?c.sTitle:b?b.innerHTML:"",aDataSort:c.aDataSort?c.aDataSort:[d],mData:c.mData?c.oDefaults:d});a.aoColumns.push(c);if(a.aoPreSearchCols[d]===n||null===a.aoPreSearchCols[d])a.aoPreSearchCols[d]=h.extend({},j.models.oSearch);else if(c=a.aoPreSearchCols[d],
-c.bRegex===n&&(c.bRegex=!0),c.bSmart===n&&(c.bSmart=!0),c.bCaseInsensitive===n)c.bCaseInsensitive=!0;m(a,d,null)}function m(a,b,c){var d=a.aoColumns[b];c!==n&&null!==c&&(c.mDataProp&&!c.mData&&(c.mData=c.mDataProp),c.sType!==n&&(d.sType=c.sType,d._bAutoType=!1),h.extend(d,c),p(d,c,"sWidth","sWidthOrig"),c.iDataSort!==n&&(d.aDataSort=[c.iDataSort]),p(d,c,"aDataSort"));var i=d.mRender?Q(d.mRender):null,f=Q(d.mData);d.fnGetData=function(a,b){var c=f(a,b);return d.mRender&&b&&""!==b?i(c,b,a):c};d.fnSetData=
-L(d.mData);a.oFeatures.bSort||(d.bSortable=!1);!d.bSortable||-1==h.inArray("asc",d.asSorting)&&-1==h.inArray("desc",d.asSorting)?(d.sSortingClass=a.oClasses.sSortableNone,d.sSortingClassJUI=""):-1==h.inArray("asc",d.asSorting)&&-1==h.inArray("desc",d.asSorting)?(d.sSortingClass=a.oClasses.sSortable,d.sSortingClassJUI=a.oClasses.sSortJUI):-1!=h.inArray("asc",d.asSorting)&&-1==h.inArray("desc",d.asSorting)?(d.sSortingClass=a.oClasses.sSortableAsc,d.sSortingClassJUI=a.oClasses.sSortJUIAscAllowed):-1==
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-sAjaxSource:null,sCookiePrefix:"SpryMedia_DataTables_",sDom:"lfrtip",sPaginationType:"two_button",sScrollX:"",sScrollXInner:"",sScrollY:"",sServerMethod:"GET"};j.defaults.columns={aDataSort:null,asSorting:["asc","desc"],bSearchable:!0,bSortable:!0,bUseRendered:!0,bVisible:!0,fnCreatedCell:null,fnRender:null,iDataSort:-1,mData:null,mRender:null,sCellType:"td",sClass:"",sContentPadding:"",sDefaultContent:null,sName:"",sSortDataType:"std",sTitle:null,sType:null,sWidth:null};j.models.oSettings={oFeatures:{bAutoWidth:null,
-bDeferRender:null,bFilter:null,bInfo:null,bLengthChange:null,bPaginate:null,bProcessing:null,bServerSide:null,bSort:null,bSortClasses:null,bStateSave:null},oScroll:{bAutoCss:null,bCollapse:null,bInfinite:null,iBarWidth:0,iLoadGap:null,sX:null,sXInner:null,sY:null},oLanguage:{fnInfoCallback:null},oBrowser:{bScrollOversize:!1},aanFeatures:[],aoData:[],aiDisplay:[],aiDisplayMaster:[],aoColumns:[],aoHeader:[],aoFooter:[],asDataSearch:[],oPreviousSearch:{},aoPreSearchCols:[],aaSorting:null,aaSortingFixed:null,
-asStripeClasses:null,asDestroyStripes:[],sDestroyWidth:0,aoRowCallback:[],aoHeaderCallback:[],aoFooterCallback:[],aoDrawCallback:[],aoRowCreatedCallback:[],aoPreDrawCallback:[],aoInitComplete:[],aoStateSaveParams:[],aoStateLoadParams:[],aoStateLoaded:[],sTableId:"",nTable:null,nTHead:null,nTFoot:null,nTBody:null,nTableWrapper:null,bDeferLoading:!1,bInitialised:!1,aoOpenRows:[],sDom:null,sPaginationType:"two_button",iCookieDuration:0,sCookiePrefix:"",fnCookieCallback:null,aoStateSave:[],aoStateLoad:[],
-oLoadedState:null,sAjaxSource:null,sAjaxDataProp:null,bAjaxDataGet:!0,jqXHR:null,fnServerData:null,aoServerParams:[],sServerMethod:null,fnFormatNumber:null,aLengthMenu:null,iDraw:0,bDrawing:!1,iDrawError:-1,_iDisplayLength:10,_iDisplayStart:0,_iDisplayEnd:10,_iRecordsTotal:0,_iRecordsDisplay:0,bJUI:null,oClasses:{},bFiltered:!1,bSorted:!1,bSortCellsTop:null,oInit:null,aoDestroyCallback:[],fnRecordsTotal:function(){return this.oFeatures.bServerSide?parseInt(this._iRecordsTotal,10):this.aiDisplayMaster.length},
-fnRecordsDisplay:function(){return this.oFeatures.bServerSide?parseInt(this._iRecordsDisplay,10):this.aiDisplay.length},fnDisplayEnd:function(){return this.oFeatures.bServerSide?!1===this.oFeatures.bPaginate||-1==this._iDisplayLength?this._iDisplayStart+this.aiDisplay.length:Math.min(this._iDisplayStart+this._iDisplayLength,this._iRecordsDisplay):this._iDisplayEnd},oInstance:null,sInstance:null,iTabIndex:0,nScrollHead:null,nScrollFoot:null};j.ext=h.extend(!0,{},j.models.ext);h.extend(j.ext.oStdClasses,
-{sTable:"dataTable",sPagePrevEnabled:"paginate_enabled_previous",sPagePrevDisabled:"paginate_disabled_previous",sPageNextEnabled:"paginate_enabled_next",sPageNextDisabled:"paginate_disabled_next",sPageJUINext:"",sPageJUIPrev:"",sPageButton:"paginate_button",sPageButtonActive:"paginate_active",sPageButtonStaticDisabled:"paginate_button paginate_button_disabled",sPageFirst:"first",sPagePrevious:"previous",sPageNext:"next",sPageLast:"last",sStripeOdd:"odd",sStripeEven:"even",sRowEmpty:"dataTables_empty",
-sWrapper:"dataTables_wrapper",sFilter:"dataTables_filter",sInfo:"dataTables_info",sPaging:"dataTables_paginate paging_",sLength:"dataTables_length",sProcessing:"dataTables_processing",sSortAsc:"sorting_asc",sSortDesc:"sorting_desc",sSortable:"sorting",sSortableAsc:"sorting_asc_disabled",sSortableDesc:"sorting_desc_disabled",sSortableNone:"sorting_disabled",sSortColumn:"sorting_",sSortJUIAsc:"",sSortJUIDesc:"",sSortJUI:"",sSortJUIAscAllowed:"",sSortJUIDescAllowed:"",sSortJUIWrapper:"",sSortIcon:"",
-sScrollWrapper:"dataTables_scroll",sScrollHead:"dataTables_scrollHead",sScrollHeadInner:"dataTables_scrollHeadInner",sScrollBody:"dataTables_scrollBody",sScrollFoot:"dataTables_scrollFoot",sScrollFootInner:"dataTables_scrollFootInner",sFooterTH:"",sJUIHeader:"",sJUIFooter:""});h.extend(j.ext.oJUIClasses,j.ext.oStdClasses,{sPagePrevEnabled:"fg-button ui-button ui-state-default ui-corner-left",sPagePrevDisabled:"fg-button ui-button ui-state-default ui-corner-left ui-state-disabled",sPageNextEnabled:"fg-button ui-button ui-state-default ui-corner-right",
-sPageNextDisabled:"fg-button ui-button ui-state-default ui-corner-right ui-state-disabled",sPageJUINext:"ui-icon ui-icon-circle-arrow-e",sPageJUIPrev:"ui-icon ui-icon-circle-arrow-w",sPageButton:"fg-button ui-button ui-state-default",sPageButtonActive:"fg-button ui-button ui-state-default ui-state-disabled",sPageButtonStaticDisabled:"fg-button ui-button ui-state-default ui-state-disabled",sPageFirst:"first ui-corner-tl ui-corner-bl",sPageLast:"last ui-corner-tr ui-corner-br",sPaging:"dataTables_paginate fg-buttonset ui-buttonset fg-buttonset-multi ui-buttonset-multi paging_",
-sSortAsc:"ui-state-default",sSortDesc:"ui-state-default",sSortable:"ui-state-default",sSortableAsc:"ui-state-default",sSortableDesc:"ui-state-default",sSortableNone:"ui-state-default",sSortJUIAsc:"css_right ui-icon ui-icon-triangle-1-n",sSortJUIDesc:"css_right ui-icon ui-icon-triangle-1-s",sSortJUI:"css_right ui-icon ui-icon-carat-2-n-s",sSortJUIAscAllowed:"css_right ui-icon ui-icon-carat-1-n",sSortJUIDescAllowed:"css_right ui-icon ui-icon-carat-1-s",sSortJUIWrapper:"DataTables_sort_wrapper",sSortIcon:"DataTables_sort_icon",
-sScrollHead:"dataTables_scrollHead ui-state-default",sScrollFoot:"dataTables_scrollFoot ui-state-default",sFooterTH:"ui-state-default",sJUIHeader:"fg-toolbar ui-toolbar ui-widget-header ui-corner-tl ui-corner-tr ui-helper-clearfix",sJUIFooter:"fg-toolbar ui-toolbar ui-widget-header ui-corner-bl ui-corner-br ui-helper-clearfix"});h.extend(j.ext.oPagination,{two_button:{fnInit:function(e,j,m){var k=e.oLanguage.oPaginate,n=function(h){e.oApi._fnPageChange(e,h.data.action)&&m(e)},k=!e.bJUI?'<a class="'+
-e.oClasses.sPagePrevDisabled+'" tabindex="'+e.iTabIndex+'" role="button">'+k.sPrevious+'</a><a class="'+e.oClasses.sPageNextDisabled+'" tabindex="'+e.iTabIndex+'" role="button">'+k.sNext+"</a>":'<a class="'+e.oClasses.sPagePrevDisabled+'" tabindex="'+e.iTabIndex+'" role="button"><span class="'+e.oClasses.sPageJUIPrev+'"></span></a><a class="'+e.oClasses.sPageNextDisabled+'" tabindex="'+e.iTabIndex+'" role="button"><span class="'+e.oClasses.sPageJUINext+'"></span></a>';h(j).append(k);var l=h("a",j),
-k=l[0],l=l[1];e.oApi._fnBindAction(k,{action:"previous"},n);e.oApi._fnBindAction(l,{action:"next"},n);e.aanFeatures.p||(j.id=e.sTableId+"_paginate",k.id=e.sTableId+"_previous",l.id=e.sTableId+"_next",k.setAttribute("aria-controls",e.sTableId),l.setAttribute("aria-controls",e.sTableId))},fnUpdate:function(e){if(e.aanFeatures.p)for(var h=e.oClasses,j=e.aanFeatures.p,k,l=0,n=j.length;l<n;l++)if(k=j[l].firstChild)k.className=0===e._iDisplayStart?h.sPagePrevDisabled:h.sPagePrevEnabled,k=k.nextSibling,
-k.className=e.fnDisplayEnd()==e.fnRecordsDisplay()?h.sPageNextDisabled:h.sPageNextEnabled}},iFullNumbersShowPages:5,full_numbers:{fnInit:function(e,j,m){var k=e.oLanguage.oPaginate,l=e.oClasses,n=function(h){e.oApi._fnPageChange(e,h.data.action)&&m(e)};h(j).append('<a  tabindex="'+e.iTabIndex+'" class="'+l.sPageButton+" "+l.sPageFirst+'">'+k.sFirst+'</a><a  tabindex="'+e.iTabIndex+'" class="'+l.sPageButton+" "+l.sPagePrevious+'">'+k.sPrevious+'</a><span></span><a tabindex="'+e.iTabIndex+'" class="'+
-l.sPageButton+" "+l.sPageNext+'">'+k.sNext+'</a><a tabindex="'+e.iTabIndex+'" class="'+l.sPageButton+" "+l.sPageLast+'">'+k.sLast+"</a>");var t=h("a",j),k=t[0],l=t[1],r=t[2],t=t[3];e.oApi._fnBindAction(k,{action:"first"},n);e.oApi._fnBindAction(l,{action:"previous"},n);e.oApi._fnBindAction(r,{action:"next"},n);e.oApi._fnBindAction(t,{action:"last"},n);e.aanFeatures.p||(j.id=e.sTableId+"_paginate",k.id=e.sTableId+"_first",l.id=e.sTableId+"_previous",r.id=e.sTableId+"_next",t.id=e.sTableId+"_last")},
-fnUpdate:function(e,o){if(e.aanFeatures.p){var m=j.ext.oPagination.iFullNumbersShowPages,k=Math.floor(m/2),l=Math.ceil(e.fnRecordsDisplay()/e._iDisplayLength),n=Math.ceil(e._iDisplayStart/e._iDisplayLength)+1,t="",r,B=e.oClasses,u,M=e.aanFeatures.p,L=function(h){e.oApi._fnBindAction(this,{page:h+r-1},function(h){e.oApi._fnPageChange(e,h.data.page);o(e);h.preventDefault()})};-1===e._iDisplayLength?n=k=r=1:l<m?(r=1,k=l):n<=k?(r=1,k=m):n>=l-k?(r=l-m+1,k=l):(r=n-Math.ceil(m/2)+1,k=r+m-1);for(m=r;m<=k;m++)t+=
-n!==m?'<a tabindex="'+e.iTabIndex+'" class="'+B.sPageButton+'">'+e.fnFormatNumber(m)+"</a>":'<a tabindex="'+e.iTabIndex+'" class="'+B.sPageButtonActive+'">'+e.fnFormatNumber(m)+"</a>";m=0;for(k=M.length;m<k;m++)u=M[m],u.hasChildNodes()&&(h("span:eq(0)",u).html(t).children("a").each(L),u=u.getElementsByTagName("a"),u=[u[0],u[1],u[u.length-2],u[u.length-1]],h(u).removeClass(B.sPageButton+" "+B.sPageButtonActive+" "+B.sPageButtonStaticDisabled),h([u[0],u[1]]).addClass(1==n?B.sPageButtonStaticDisabled:
-B.sPageButton),h([u[2],u[3]]).addClass(0===l||n===l||-1===e._iDisplayLength?B.sPageButtonStaticDisabled:B.sPageButton))}}}});h.extend(j.ext.oSort,{"string-pre":function(e){"string"!=typeof e&&(e=null!==e&&e.toString?e.toString():"");return e.toLowerCase()},"string-asc":function(e,h){return e<h?-1:e>h?1:0},"string-desc":function(e,h){return e<h?1:e>h?-1:0},"html-pre":function(e){return e.replace(/<.*?>/g,"").toLowerCase()},"html-asc":function(e,h){return e<h?-1:e>h?1:0},"html-desc":function(e,h){return e<
-h?1:e>h?-1:0},"date-pre":function(e){e=Date.parse(e);if(isNaN(e)||""===e)e=Date.parse("01/01/1970 00:00:00");return e},"date-asc":function(e,h){return e-h},"date-desc":function(e,h){return h-e},"numeric-pre":function(e){return"-"==e||""===e?0:1*e},"numeric-asc":function(e,h){return e-h},"numeric-desc":function(e,h){return h-e}});h.extend(j.ext.aTypes,[function(e){if("number"===typeof e)return"numeric";if("string"!==typeof e)return null;var h,j=!1;h=e.charAt(0);if(-1=="0123456789-".indexOf(h))return null;
-for(var k=1;k<e.length;k++){h=e.charAt(k);if(-1=="0123456789.".indexOf(h))return null;if("."==h){if(j)return null;j=!0}}return"numeric"},function(e){var h=Date.parse(e);return null!==h&&!isNaN(h)||"string"===typeof e&&0===e.length?"date":null},function(e){return"string"===typeof e&&-1!=e.indexOf("<")&&-1!=e.indexOf(">")?"html":null}]);h.fn.DataTable=j;h.fn.dataTable=j;h.fn.dataTableSettings=j.settings;h.fn.dataTableExt=j.ext};"function"===typeof define&&define.amd?define(["jquery"],L):jQuery&&!jQuery.fn.dataTable&&
-L(jQuery)})(window,document);
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+overflow:"scroll"}).append(g('<div class="test"/>').css({width:"100%",height:10}))).appendTo("body"),c=b.find(".test");a.bScrollOversize=100===c[0].offsetWidth;a.bScrollbarLeft=1!==c.offset().left;b.remove()}function gb(a,b,c,e,d,f){var h,i=!1;c!==l&&(h=c,i=!0);for(;e!==d;)a.hasOwnProperty(e)&&(h=i?b(h,a[e],e,a):a[e],i=!0,e+=f);return h}function Ea(a,b){var c=p.defaults.column,e=a.aoColumns.length,c=g.extend({},p.models.oColumn,c,{nTh:b?b:P.createElement("th"),sTitle:c.sTitle?c.sTitle:b?b.innerHTML:
+"",aDataSort:c.aDataSort?c.aDataSort:[e],mData:c.mData?c.mData:e,idx:e});a.aoColumns.push(c);c=a.aoPreSearchCols;c[e]=g.extend({},p.models.oSearch,c[e]);ja(a,e,null)}function ja(a,b,c){var b=a.aoColumns[b],e=a.oClasses,d=g(b.nTh);if(!b.sWidthOrig){b.sWidthOrig=d.attr("width")||null;var f=(d.attr("style")||"").match(/width:\s*(\d+[pxem%]+)/);f&&(b.sWidthOrig=f[1])}c!==l&&null!==c&&(eb(c),G(p.defaults.column,c),c.mDataProp!==l&&!c.mData&&(c.mData=c.mDataProp),c.sType&&(b._sManualType=c.sType),c.className&&
+!c.sClass&&(c.sClass=c.className),g.extend(b,c),D(b,c,"sWidth","sWidthOrig"),"number"===typeof c.iDataSort&&(b.aDataSort=[c.iDataSort]),D(b,c,"aDataSort"));var h=b.mData,i=W(h),j=b.mRender?W(b.mRender):null,c=function(a){return"string"===typeof a&&-1!==a.indexOf("@")};b._bAttrSrc=g.isPlainObject(h)&&(c(h.sort)||c(h.type)||c(h.filter));b.fnGetData=function(a,b,c){var e=i(a,b,l,c);return j&&b?j(e,b,a,c):e};b.fnSetData=function(a,b,c){return Q(h)(a,b,c)};"number"!==typeof h&&(a._rowReadObject=!0);a.oFeatures.bSort||
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+e;c++)b[c].nTh.style.width=b[c].sWidth}b=a.oScroll;(""!==b.sY||""!==b.sX)&&Y(a);u(a,null,"column-sizing",[a])}function ka(a,b){var c=Z(a,"bVisible");return"number"===typeof c[b]?c[b]:null}function $(a,b){var c=Z(a,"bVisible"),c=g.inArray(b,c);return-1!==c?c:null}function aa(a){return Z(a,"bVisible").length}function Z(a,b){var c=[];g.map(a.aoColumns,function(a,d){a[b]&&c.push(d)});return c}function Ga(a){var b=a.aoColumns,c=a.aoData,e=p.ext.type.detect,d,f,h,i,j,g,m,o,k;d=0;for(f=b.length;d<f;d++)if(m=
+b[d],k=[],!m.sType&&m._sManualType)m.sType=m._sManualType;else if(!m.sType){h=0;for(i=e.length;h<i;h++){j=0;for(g=c.length;j<g;j++){k[j]===l&&(k[j]=v(a,j,d,"type"));o=e[h](k[j],a);if(!o&&h!==e.length-1)break;if("html"===o)break}if(o){m.sType=o;break}}m.sType||(m.sType="string")}}function hb(a,b,c,e){var d,f,h,i,j,n,m=a.aoColumns;if(b)for(d=b.length-1;0<=d;d--){n=b[d];var o=n.targets!==l?n.targets:n.aTargets;g.isArray(o)||(o=[o]);f=0;for(h=o.length;f<h;f++)if("number"===typeof o[f]&&0<=o[f]){for(;m.length<=
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+d,c,e);return d}function la(a,b){var c;b instanceof g||(b=g(b));return b.map(function(b,d){c=ma(a,d);return I(a,c.data,d,c.cells)})}function v(a,b,c,e){var d=a.iDraw,f=a.aoColumns[c],h=a.aoData[b]._aData,i=f.sDefaultContent,c=f.fnGetData(h,e,{settings:a,row:b,col:c});if(c===l)return a.iDrawError!=d&&null===i&&(R(a,0,"Requested unknown parameter "+("function"==typeof f.mData?"{function}":"'"+f.mData+"'")+" for row "+b,4),a.iDrawError=d),i;if((c===h||null===c)&&null!==i)c=i;else if("function"===typeof c)return c.call(h);
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+sTableId:"",nTable:null,nTHead:null,nTFoot:null,nTBody:null,nTableWrapper:null,bDeferLoading:!1,bInitialised:!1,aoOpenRows:[],sDom:null,searchDelay:null,sPaginationType:"two_button",iStateDuration:0,aoStateSave:[],aoStateLoad:[],oSavedState:null,oLoadedState:null,sAjaxSource:null,sAjaxDataProp:null,bAjaxDataGet:!0,jqXHR:null,json:l,oAjaxData:l,fnServerData:null,aoServerParams:[],sServerMethod:null,fnFormatNumber:null,aLengthMenu:null,iDraw:0,bDrawing:!1,iDrawError:-1,_iDisplayLength:10,_iDisplayStart:0,
+_iRecordsTotal:0,_iRecordsDisplay:0,bJUI:null,oClasses:{},bFiltered:!1,bSorted:!1,bSortCellsTop:null,oInit:null,aoDestroyCallback:[],fnRecordsTotal:function(){return"ssp"==A(this)?1*this._iRecordsTotal:this.aiDisplayMaster.length},fnRecordsDisplay:function(){return"ssp"==A(this)?1*this._iRecordsDisplay:this.aiDisplay.length},fnDisplayEnd:function(){var a=this._iDisplayLength,b=this._iDisplayStart,c=b+a,e=this.aiDisplay.length,d=this.oFeatures,f=d.bPaginate;return d.bServerSide?!1===f||-1===a?b+e:
+Math.min(b+a,this._iRecordsDisplay):!f||c>e||-1===a?e:c},oInstance:null,sInstance:null,iTabIndex:0,nScrollHead:null,nScrollFoot:null,aLastSort:[],oPlugins:{}};p.ext=w={classes:{},errMode:"alert",feature:[],search:[],internal:{},legacy:{ajax:null},pager:{},renderer:{pageButton:{},header:{}},order:{},type:{detect:[],search:{},order:{}},_unique:0,fnVersionCheck:p.fnVersionCheck,iApiIndex:0,oJUIClasses:{},sVersion:p.version};g.extend(w,{afnFiltering:w.search,aTypes:w.type.detect,ofnSearch:w.type.search,
+oSort:w.type.order,afnSortData:w.order,aoFeatures:w.feature,oApi:w.internal,oStdClasses:w.classes,oPagination:w.pager});g.extend(p.ext.classes,{sTable:"dataTable",sNoFooter:"no-footer",sPageButton:"paginate_button",sPageButtonActive:"current",sPageButtonDisabled:"disabled",sStripeOdd:"odd",sStripeEven:"even",sRowEmpty:"dataTables_empty",sWrapper:"dataTables_wrapper",sFilter:"dataTables_filter",sInfo:"dataTables_info",sPaging:"dataTables_paginate paging_",sLength:"dataTables_length",sProcessing:"dataTables_processing",
+sSortAsc:"sorting_asc",sSortDesc:"sorting_desc",sSortable:"sorting",sSortableAsc:"sorting_asc_disabled",sSortableDesc:"sorting_desc_disabled",sSortableNone:"sorting_disabled",sSortColumn:"sorting_",sFilterInput:"",sLengthSelect:"",sScrollWrapper:"dataTables_scroll",sScrollHead:"dataTables_scrollHead",sScrollHeadInner:"dataTables_scrollHeadInner",sScrollBody:"dataTables_scrollBody",sScrollFoot:"dataTables_scrollFoot",sScrollFootInner:"dataTables_scrollFootInner",sHeaderTH:"",sFooterTH:"",sSortJUIAsc:"",
+sSortJUIDesc:"",sSortJUI:"",sSortJUIAscAllowed:"",sSortJUIDescAllowed:"",sSortJUIWrapper:"",sSortIcon:"",sJUIHeader:"",sJUIFooter:""});var Ca="",Ca="",E=Ca+"ui-state-default",ia=Ca+"css_right ui-icon ui-icon-",Wb=Ca+"fg-toolbar ui-toolbar ui-widget-header ui-helper-clearfix";g.extend(p.ext.oJUIClasses,p.ext.classes,{sPageButton:"fg-button ui-button "+E,sPageButtonActive:"ui-state-disabled",sPageButtonDisabled:"ui-state-disabled",sPaging:"dataTables_paginate fg-buttonset ui-buttonset fg-buttonset-multi ui-buttonset-multi paging_",
+sSortAsc:E+" sorting_asc",sSortDesc:E+" sorting_desc",sSortable:E+" sorting",sSortableAsc:E+" sorting_asc_disabled",sSortableDesc:E+" sorting_desc_disabled",sSortableNone:E+" sorting_disabled",sSortJUIAsc:ia+"triangle-1-n",sSortJUIDesc:ia+"triangle-1-s",sSortJUI:ia+"carat-2-n-s",sSortJUIAscAllowed:ia+"carat-1-n",sSortJUIDescAllowed:ia+"carat-1-s",sSortJUIWrapper:"DataTables_sort_wrapper",sSortIcon:"DataTables_sort_icon",sScrollHead:"dataTables_scrollHead "+E,sScrollFoot:"dataTables_scrollFoot "+E,
+sHeaderTH:E,sFooterTH:E,sJUIHeader:Wb+" ui-corner-tl ui-corner-tr",sJUIFooter:Wb+" ui-corner-bl ui-corner-br"});var Lb=p.ext.pager;g.extend(Lb,{simple:function(){return["previous","next"]},full:function(){return["first","previous","next","last"]},simple_numbers:function(a,b){return["previous",Va(a,b),"next"]},full_numbers:function(a,b){return["first","previous",Va(a,b),"next","last"]},_numbers:Va,numbers_length:7});g.extend(!0,p.ext.renderer,{pageButton:{_:function(a,b,c,e,d,f){var h=a.oClasses,i=
+a.oLanguage.oPaginate,j,l,m=0,o=function(b,e){var k,p,r,q,s=function(b){Sa(a,b.data.action,true)};k=0;for(p=e.length;k<p;k++){q=e[k];if(g.isArray(q)){r=g("<"+(q.DT_el||"div")+"/>").appendTo(b);o(r,q)}else{l=j="";switch(q){case "ellipsis":b.append("<span>&hellip;</span>");break;case "first":j=i.sFirst;l=q+(d>0?"":" "+h.sPageButtonDisabled);break;case "previous":j=i.sPrevious;l=q+(d>0?"":" "+h.sPageButtonDisabled);break;case "next":j=i.sNext;l=q+(d<f-1?"":" "+h.sPageButtonDisabled);break;case "last":j=
+i.sLast;l=q+(d<f-1?"":" "+h.sPageButtonDisabled);break;default:j=q+1;l=d===q?h.sPageButtonActive:""}if(j){r=g("<a>",{"class":h.sPageButton+" "+l,"aria-controls":a.sTableId,"data-dt-idx":m,tabindex:a.iTabIndex,id:c===0&&typeof q==="string"?a.sTableId+"_"+q:null}).html(j).appendTo(b);Ua(r,{action:q},s);m++}}}};try{var k=g(P.activeElement).data("dt-idx");o(g(b).empty(),e);k!==null&&g(b).find("[data-dt-idx="+k+"]").focus()}catch(p){}}}});g.extend(p.ext.type.detect,[function(a,b){var c=b.oLanguage.sDecimal;
+return Ya(a,c)?"num"+c:null},function(a){if(a&&!(a instanceof Date)&&(!$b.test(a)||!ac.test(a)))return null;var b=Date.parse(a);return null!==b&&!isNaN(b)||H(a)?"date":null},function(a,b){var c=b.oLanguage.sDecimal;return Ya(a,c,!0)?"num-fmt"+c:null},function(a,b){var c=b.oLanguage.sDecimal;return Qb(a,c)?"html-num"+c:null},function(a,b){var c=b.oLanguage.sDecimal;return Qb(a,c,!0)?"html-num-fmt"+c:null},function(a){return H(a)||"string"===typeof a&&-1!==a.indexOf("<")?"html":null}]);g.extend(p.ext.type.search,
+{html:function(a){return H(a)?a:"string"===typeof a?a.replace(Nb," ").replace(Aa,""):""},string:function(a){return H(a)?a:"string"===typeof a?a.replace(Nb," "):a}});var za=function(a,b,c,e){if(0!==a&&(!a||"-"===a))return-Infinity;b&&(a=Pb(a,b));a.replace&&(c&&(a=a.replace(c,"")),e&&(a=a.replace(e,"")));return 1*a};g.extend(w.type.order,{"date-pre":function(a){return Date.parse(a)||0},"html-pre":function(a){return H(a)?"":a.replace?a.replace(/<.*?>/g,"").toLowerCase():a+""},"string-pre":function(a){return H(a)?
+"":"string"===typeof a?a.toLowerCase():!a.toString?"":a.toString()},"string-asc":function(a,b){return a<b?-1:a>b?1:0},"string-desc":function(a,b){return a<b?1:a>b?-1:0}});cb("");g.extend(!0,p.ext.renderer,{header:{_:function(a,b,c,e){g(a.nTable).on("order.dt.DT",function(d,f,h,g){if(a===f){d=c.idx;b.removeClass(c.sSortingClass+" "+e.sSortAsc+" "+e.sSortDesc).addClass(g[d]=="asc"?e.sSortAsc:g[d]=="desc"?e.sSortDesc:c.sSortingClass)}})},jqueryui:function(a,b,c,e){g("<div/>").addClass(e.sSortJUIWrapper).append(b.contents()).append(g("<span/>").addClass(e.sSortIcon+
+" "+c.sSortingClassJUI)).appendTo(b);g(a.nTable).on("order.dt.DT",function(d,f,g,i){if(a===f){d=c.idx;b.removeClass(e.sSortAsc+" "+e.sSortDesc).addClass(i[d]=="asc"?e.sSortAsc:i[d]=="desc"?e.sSortDesc:c.sSortingClass);b.find("span."+e.sSortIcon).removeClass(e.sSortJUIAsc+" "+e.sSortJUIDesc+" "+e.sSortJUI+" "+e.sSortJUIAscAllowed+" "+e.sSortJUIDescAllowed).addClass(i[d]=="asc"?e.sSortJUIAsc:i[d]=="desc"?e.sSortJUIDesc:c.sSortingClassJUI)}})}}});p.render={number:function(a,b,c,e){return{display:function(d){var f=
+0>d?"-":"",d=Math.abs(parseFloat(d)),g=parseInt(d,10),d=c?b+(d-g).toFixed(c).substring(2):"";return f+(e||"")+g.toString().replace(/\B(?=(\d{3})+(?!\d))/g,a)+d}}}};g.extend(p.ext.internal,{_fnExternApiFunc:Mb,_fnBuildAjax:qa,_fnAjaxUpdate:jb,_fnAjaxParameters:sb,_fnAjaxUpdateDraw:tb,_fnAjaxDataSrc:ra,_fnAddColumn:Ea,_fnColumnOptions:ja,_fnAdjustColumnSizing:X,_fnVisibleToColumnIndex:ka,_fnColumnIndexToVisible:$,_fnVisbleColumns:aa,_fnGetColumns:Z,_fnColumnTypes:Ga,_fnApplyColumnDefs:hb,_fnHungarianMap:V,
+_fnCamelToHungarian:G,_fnLanguageCompat:O,_fnBrowserDetect:fb,_fnAddData:I,_fnAddTr:la,_fnNodeToDataIndex:function(a,b){return b._DT_RowIndex!==l?b._DT_RowIndex:null},_fnNodeToColumnIndex:function(a,b,c){return g.inArray(c,a.aoData[b].anCells)},_fnGetCellData:v,_fnSetCellData:Ha,_fnSplitObjNotation:Ja,_fnGetObjectDataFn:W,_fnSetObjectDataFn:Q,_fnGetDataMaster:Ka,_fnClearTable:na,_fnDeleteIndex:oa,_fnInvalidate:ca,_fnGetRowElements:ma,_fnCreateTr:Ia,_fnBuildHead:ib,_fnDrawHead:ea,_fnDraw:L,_fnReDraw:M,
+_fnAddOptionsHtml:lb,_fnDetectHeader:da,_fnGetUniqueThs:pa,_fnFeatureHtmlFilter:nb,_fnFilterComplete:fa,_fnFilterCustom:wb,_fnFilterColumn:vb,_fnFilter:ub,_fnFilterCreateSearch:Pa,_fnEscapeRegex:ua,_fnFilterData:xb,_fnFeatureHtmlInfo:qb,_fnUpdateInfo:Ab,_fnInfoMacros:Bb,_fnInitialise:ga,_fnInitComplete:sa,_fnLengthChange:Qa,_fnFeatureHtmlLength:mb,_fnFeatureHtmlPaginate:rb,_fnPageChange:Sa,_fnFeatureHtmlProcessing:ob,_fnProcessingDisplay:B,_fnFeatureHtmlTable:pb,_fnScrollDraw:Y,_fnApplyToChildren:F,
+_fnCalculateColumnWidths:Fa,_fnThrottle:ta,_fnConvertToWidth:Cb,_fnScrollingWidthAdjust:Eb,_fnGetWidestNode:Db,_fnGetMaxLenString:Fb,_fnStringToCss:s,_fnScrollBarWidth:Gb,_fnSortFlatten:T,_fnSort:kb,_fnSortAria:Ib,_fnSortListener:Ta,_fnSortAttachListener:Na,_fnSortingClasses:wa,_fnSortData:Hb,_fnSaveState:xa,_fnLoadState:Jb,_fnSettingsFromNode:ya,_fnLog:R,_fnMap:D,_fnBindAction:Ua,_fnCallbackReg:x,_fnCallbackFire:u,_fnLengthOverflow:Ra,_fnRenderer:Oa,_fnDataSource:A,_fnRowAttributes:La,_fnCalculateEnd:function(){}});
+g.fn.dataTable=p;g.fn.dataTableSettings=p.settings;g.fn.dataTableExt=p.ext;g.fn.DataTable=function(a){return g(this).dataTable(a).api()};g.each(p,function(a,b){g.fn.DataTable[a]=b});return g.fn.dataTable};"function"===typeof define&&define.amd?define("datatables",["jquery"],O):"object"===typeof exports?O(require("jquery")):jQuery&&!jQuery.fn.dataTable&&O(jQuery)})(window,document);

inst/www/shared/datatables/upgrade1.10.txt

@@ -0,0 +1,95 @@
+aaData	data
+aaSorting	order
+aaSortingFixed	orderFixed
+aDataSort	columns.orderData
+aLengthMenu	lengthMenu
+aoSearchCols	searchCols
+asSorting	columns.orderSequence
+asStripeClasses	stripeClasses
+bAutoWidth	autoWidth
+bDeferRender	deferRender
+bDestroy	destroy
+bFilter	searching
+bInfo	info
+bJQueryUI	jQueryUI
+bLengthChange	lengthChange
+bPaginate	paging
+bProcessing	processing
+bRetrieve	retrieve
+bScrollAutoCss	Removed	
+bScrollCollapse	scrollCollapse
+bScrollInfinite	Removed	
+bSearchable	columns.searchable
+bServerSide	serverSide
+bSort	ordering
+bSortable	columns.orderable
+bSortCellsTop	orderCellsTop
+bSortClasses	orderClasses
+bStateSave	stateSave
+bUseRendered	Removed
+bVisible	columns.visible
+fnCookieCallback	Removed	
+fnCreatedCell	columns.createdCell
+fnCreatedRow	createdRow
+fnDrawCallback	drawCallback
+fnFooterCallback	footerCallback
+fnFormatNumber	formatNumber
+fnHeaderCallback	headerCallback
+fnInfoCallback	infoCallback
+fnInitComplete	initComplete
+fnPreDrawCallback	preDrawCallback
+fnRender	Removed
+fnRowCallback	rowCallback
+fnServerData	ajax
+fnServerParams	ajax
+fnStateLoad	stateLoadCallback
+fnStateLoaded	stateLoaded
+fnStateLoadParams	stateLoadParams
+fnStateSave	stateSaveCallback
+fnStateSaveParams	stateSaveParams
+iCookieDuration	stateDuration
+iDataSort	columns.orderData
+iDeferLoading	deferLoading
+iDisplayLength	pageLength
+iDisplayStart	displayStart
+iScrollLoadGap	Removed	
+iTabIndex	tabIndex
+mData	columns.data
+mRender	columns.render
+oLanguage.oAria.sSortAscending	language.aria.sortAscending
+oLanguage.oAria.sSortDescending	language.aria.sortDescending
+oLanguage.oPaginate.sFirst	language.paginate.first
+oLanguage.oPaginate.sLast	language.paginate.last
+oLanguage.oPaginate.sNext	language.paginate.next
+oLanguage.oPaginate.sPrevious	language.paginate.previous
+oLanguage.sEmptyTable	language.emptyTable
+oLanguage.sInfo	language.info
+oLanguage.sInfoEmpty	language.infoEmpty
+oLanguage.sInfoFiltered	language.infoFiltered
+oLanguage.sInfoPostFix	language.infoPostFix
+oLanguage.sInfoThousands	language.thousands
+oLanguage.sLengthMenu	language.lengthMenu
+oLanguage.sLoadingRecords	language.loadingRecords
+oLanguage.sProcessing	language.processing
+oLanguage.sSearch	language.search
+oLanguage.sUrl	language.url
+oLanguage.sZeroRecords	language.zeroRecords
+oSearch	search
+sAjaxDataProp	ajax.dataSrc
+sAjaxSource	ajax
+sCellType	columns.cellType
+sClass	columns.className
+sContentPadding	contentPadding
+sCookiePrefix	Removed	
+sDefaultContent	columns.defaultContent
+sDom	dom
+sName	columns.name
+sPaginationType	pagingType
+sScrollX	scrollX
+sScrollXInner	scrollXInner
+sScrollY	scrollY
+sServerMethod	ajax
+sSortDataType	columns.orderDataType
+sTitle	columns.title
+sType	columns.type
+sWidth	columns.width

inst/www/shared/datepicker/js/bootstrap-datepicker.js

@@ -65,7 +65,7 @@
 		if (this.isRTL){
 			this.picker.addClass('datepicker-rtl');
 			this.picker.find('.prev i, .next i')
-						.toggleClass('icon-arrow-left icon-arrow-right');
+						.toggleClass('glyphicon-arrow-left glyphicon-arrow-right');
 		}
 
 		this.autoclose = false;
@@ -1112,9 +1112,9 @@
 		},
 		headTemplate: '<thead>'+
 							'<tr>'+
-								'<th class="prev"><i class="icon-arrow-left"/></th>'+
+								'<th class="prev"><i class="glyphicon glyphicon-arrow-left"/></th>'+
 								'<th colspan="5" class="datepicker-switch"></th>'+
-								'<th class="next"><i class="icon-arrow-right"/></th>'+
+								'<th class="next"><i class="glyphicon glyphicon-arrow-right"/></th>'+
 							'</tr>'+
 						'</thead>',
 		contTemplate: '<tbody><tr><td colspan="7"></td></tr></tbody>',

inst/www/shared/font-awesome/css/font-awesome.css

@@ -1,28 +1,27 @@
 /*!
- *  Font Awesome 4.0.3 by @davegandy - http://fontawesome.io - @fontawesome
+ *  Font Awesome 4.2.0 by @davegandy - http://fontawesome.io - @fontawesome
  *  License - http://fontawesome.io/license (Font: SIL OFL 1.1, CSS: MIT License)
  */
 /* FONT PATH
  * -------------------------- */
 @font-face {
   font-family: 'FontAwesome';
-  src: url('../fonts/fontawesome-webfont.eot?v=4.0.3');
-  src: url('../fonts/fontawesome-webfont.eot?#iefix&v=4.0.3') format('embedded-opentype'), url('../fonts/fontawesome-webfont.woff?v=4.0.3') format('woff'), url('../fonts/fontawesome-webfont.ttf?v=4.0.3') format('truetype'), url('../fonts/fontawesome-webfont.svg?v=4.0.3#fontawesomeregular') format('svg');
+  src: url('../fonts/fontawesome-webfont.eot?v=4.2.0');
+  src: url('../fonts/fontawesome-webfont.eot?#iefix&v=4.2.0') format('embedded-opentype'), url('../fonts/fontawesome-webfont.woff?v=4.2.0') format('woff'), url('../fonts/fontawesome-webfont.ttf?v=4.2.0') format('truetype'), url('../fonts/fontawesome-webfont.svg?v=4.2.0#fontawesomeregular') format('svg');
   font-weight: normal;
   font-style: normal;
 }
 .fa {
   display: inline-block;
-  font-family: FontAwesome;
-  font-style: normal;
-  font-weight: normal;
-  line-height: 1;
+  font: normal normal normal 14px/1 FontAwesome;
+  font-size: inherit;
+  text-rendering: auto;
   -webkit-font-smoothing: antialiased;
   -moz-osx-font-smoothing: grayscale;
 }
 /* makes the font 33% larger relative to the icon container */
 .fa-lg {
-  font-size: 1.3333333333333333em;
+  font-size: 1.33333333em;
   line-height: 0.75em;
   vertical-align: -15%;
 }
@@ -39,12 +38,12 @@
   font-size: 5em;
 }
 .fa-fw {
-  width: 1.2857142857142858em;
+  width: 1.28571429em;
   text-align: center;
 }
 .fa-ul {
   padding-left: 0;
-  margin-left: 2.142857142857143em;
+  margin-left: 2.14285714em;
   list-style-type: none;
 }
 .fa-ul > li {
@@ -52,13 +51,13 @@
 }
 .fa-li {
   position: absolute;
-  left: -2.142857142857143em;
-  width: 2.142857142857143em;
-  top: 0.14285714285714285em;
+  left: -2.14285714em;
+  width: 2.14285714em;
+  top: 0.14285714em;
   text-align: center;
 }
 .fa-li.fa-lg {
-  left: -1.8571428571428572em;
+  left: -1.85714286em;
 }
 .fa-border {
   padding: .2em .25em .15em;
@@ -78,91 +77,66 @@
   margin-left: .3em;
 }
 .fa-spin {
-  -webkit-animation: spin 2s infinite linear;
-  -moz-animation: spin 2s infinite linear;
-  -o-animation: spin 2s infinite linear;
-  animation: spin 2s infinite linear;
+  -webkit-animation: fa-spin 2s infinite linear;
+  animation: fa-spin 2s infinite linear;
 }
-@-moz-keyframes spin {
-  0% {
-    -moz-transform: rotate(0deg);
-  }
-  100% {
-    -moz-transform: rotate(359deg);
-  }
-}
-@-webkit-keyframes spin {
+@-webkit-keyframes fa-spin {
   0% {
     -webkit-transform: rotate(0deg);
-  }
-  100% {
-    -webkit-transform: rotate(359deg);
-  }
-}
-@-o-keyframes spin {
-  0% {
-    -o-transform: rotate(0deg);
-  }
-  100% {
-    -o-transform: rotate(359deg);
-  }
-}
-@-ms-keyframes spin {
-  0% {
-    -ms-transform: rotate(0deg);
-  }
-  100% {
-    -ms-transform: rotate(359deg);
-  }
-}
-@keyframes spin {
-  0% {
     transform: rotate(0deg);
   }
   100% {
+    -webkit-transform: rotate(359deg);
+    transform: rotate(359deg);
+  }
+}
+@keyframes fa-spin {
+  0% {
+    -webkit-transform: rotate(0deg);
+    transform: rotate(0deg);
+  }
+  100% {
+    -webkit-transform: rotate(359deg);
     transform: rotate(359deg);
   }
 }
 .fa-rotate-90 {
   filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=1);
   -webkit-transform: rotate(90deg);
-  -moz-transform: rotate(90deg);
   -ms-transform: rotate(90deg);
-  -o-transform: rotate(90deg);
   transform: rotate(90deg);
 }
 .fa-rotate-180 {
   filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=2);
   -webkit-transform: rotate(180deg);
-  -moz-transform: rotate(180deg);
   -ms-transform: rotate(180deg);
-  -o-transform: rotate(180deg);
   transform: rotate(180deg);
 }
 .fa-rotate-270 {
   filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=3);
   -webkit-transform: rotate(270deg);
-  -moz-transform: rotate(270deg);
   -ms-transform: rotate(270deg);
-  -o-transform: rotate(270deg);
   transform: rotate(270deg);
 }
 .fa-flip-horizontal {
   filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=0, mirror=1);
   -webkit-transform: scale(-1, 1);
-  -moz-transform: scale(-1, 1);
   -ms-transform: scale(-1, 1);
-  -o-transform: scale(-1, 1);
   transform: scale(-1, 1);
 }
 .fa-flip-vertical {
   filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=2, mirror=1);
   -webkit-transform: scale(1, -1);
-  -moz-transform: scale(1, -1);
   -ms-transform: scale(1, -1);
-  -o-transform: scale(1, -1);
   transform: scale(1, -1);
 }
+:root .fa-rotate-90,
+:root .fa-rotate-180,
+:root .fa-rotate-270,
+:root .fa-flip-horizontal,
+:root .fa-flip-vertical {
+  filter: none;
+}
 .fa-stack {
   position: relative;
   display: inline-block;
@@ -228,6 +202,8 @@
 .fa-check:before {
   content: "\f00c";
 }
+.fa-remove:before,
+.fa-close:before,
 .fa-times:before {
   content: "\f00d";
 }
@@ -369,6 +345,8 @@
 .fa-video-camera:before {
   content: "\f03d";
 }
+.fa-photo:before,
+.fa-image:before,
 .fa-picture-o:before {
   content: "\f03e";
 }
@@ -555,7 +533,8 @@
 .fa-arrows-h:before {
   content: "\f07e";
 }
-.fa-bar-chart-o:before {
+.fa-bar-chart-o:before,
+.fa-bar-chart:before {
   content: "\f080";
 }
 .fa-twitter-square:before {
@@ -732,6 +711,8 @@
 .fa-square:before {
   content: "\f0c8";
 }
+.fa-navicon:before,
+.fa-reorder:before,
 .fa-bars:before {
   content: "\f0c9";
 }
@@ -791,11 +772,11 @@
   content: "\f0dc";
 }
 .fa-sort-down:before,
-.fa-sort-asc:before {
+.fa-sort-desc:before {
   content: "\f0dd";
 }
 .fa-sort-up:before,
-.fa-sort-desc:before {
+.fa-sort-asc:before {
   content: "\f0de";
 }
 .fa-envelope:before {
@@ -985,12 +966,10 @@
 .fa-code:before {
   content: "\f121";
 }
+.fa-mail-reply-all:before,
 .fa-reply-all:before {
   content: "\f122";
 }
-.fa-mail-reply-all:before {
-  content: "\f122";
-}
 .fa-star-half-empty:before,
 .fa-star-half-full:before,
 .fa-star-half-o:before {
@@ -1336,3 +1315,358 @@
 .fa-plus-square-o:before {
   content: "\f196";
 }
+.fa-space-shuttle:before {
+  content: "\f197";
+}
+.fa-slack:before {
+  content: "\f198";
+}
+.fa-envelope-square:before {
+  content: "\f199";
+}
+.fa-wordpress:before {
+  content: "\f19a";
+}
+.fa-openid:before {
+  content: "\f19b";
+}
+.fa-institution:before,
+.fa-bank:before,
+.fa-university:before {
+  content: "\f19c";
+}
+.fa-mortar-board:before,
+.fa-graduation-cap:before {
+  content: "\f19d";
+}
+.fa-yahoo:before {
+  content: "\f19e";
+}
+.fa-google:before {
+  content: "\f1a0";
+}
+.fa-reddit:before {
+  content: "\f1a1";
+}
+.fa-reddit-square:before {
+  content: "\f1a2";
+}
+.fa-stumbleupon-circle:before {
+  content: "\f1a3";
+}
+.fa-stumbleupon:before {
+  content: "\f1a4";
+}
+.fa-delicious:before {
+  content: "\f1a5";
+}
+.fa-digg:before {
+  content: "\f1a6";
+}
+.fa-pied-piper:before {
+  content: "\f1a7";
+}
+.fa-pied-piper-alt:before {
+  content: "\f1a8";
+}
+.fa-drupal:before {
+  content: "\f1a9";
+}
+.fa-joomla:before {
+  content: "\f1aa";
+}
+.fa-language:before {
+  content: "\f1ab";
+}
+.fa-fax:before {
+  content: "\f1ac";
+}
+.fa-building:before {
+  content: "\f1ad";
+}
+.fa-child:before {
+  content: "\f1ae";
+}
+.fa-paw:before {
+  content: "\f1b0";
+}
+.fa-spoon:before {
+  content: "\f1b1";
+}
+.fa-cube:before {
+  content: "\f1b2";
+}
+.fa-cubes:before {
+  content: "\f1b3";
+}
+.fa-behance:before {
+  content: "\f1b4";
+}
+.fa-behance-square:before {
+  content: "\f1b5";
+}
+.fa-steam:before {
+  content: "\f1b6";
+}
+.fa-steam-square:before {
+  content: "\f1b7";
+}
+.fa-recycle:before {
+  content: "\f1b8";
+}
+.fa-automobile:before,
+.fa-car:before {
+  content: "\f1b9";
+}
+.fa-cab:before,
+.fa-taxi:before {
+  content: "\f1ba";
+}
+.fa-tree:before {
+  content: "\f1bb";
+}
+.fa-spotify:before {
+  content: "\f1bc";
+}
+.fa-deviantart:before {
+  content: "\f1bd";
+}
+.fa-soundcloud:before {
+  content: "\f1be";
+}
+.fa-database:before {
+  content: "\f1c0";
+}
+.fa-file-pdf-o:before {
+  content: "\f1c1";
+}
+.fa-file-word-o:before {
+  content: "\f1c2";
+}
+.fa-file-excel-o:before {
+  content: "\f1c3";
+}
+.fa-file-powerpoint-o:before {
+  content: "\f1c4";
+}
+.fa-file-photo-o:before,
+.fa-file-picture-o:before,
+.fa-file-image-o:before {
+  content: "\f1c5";
+}
+.fa-file-zip-o:before,
+.fa-file-archive-o:before {
+  content: "\f1c6";
+}
+.fa-file-sound-o:before,
+.fa-file-audio-o:before {
+  content: "\f1c7";
+}
+.fa-file-movie-o:before,
+.fa-file-video-o:before {
+  content: "\f1c8";
+}
+.fa-file-code-o:before {
+  content: "\f1c9";
+}
+.fa-vine:before {
+  content: "\f1ca";
+}
+.fa-codepen:before {
+  content: "\f1cb";
+}
+.fa-jsfiddle:before {
+  content: "\f1cc";
+}
+.fa-life-bouy:before,
+.fa-life-buoy:before,
+.fa-life-saver:before,
+.fa-support:before,
+.fa-life-ring:before {
+  content: "\f1cd";
+}
+.fa-circle-o-notch:before {
+  content: "\f1ce";
+}
+.fa-ra:before,
+.fa-rebel:before {
+  content: "\f1d0";
+}
+.fa-ge:before,
+.fa-empire:before {
+  content: "\f1d1";
+}
+.fa-git-square:before {
+  content: "\f1d2";
+}
+.fa-git:before {
+  content: "\f1d3";
+}
+.fa-hacker-news:before {
+  content: "\f1d4";
+}
+.fa-tencent-weibo:before {
+  content: "\f1d5";
+}
+.fa-qq:before {
+  content: "\f1d6";
+}
+.fa-wechat:before,
+.fa-weixin:before {
+  content: "\f1d7";
+}
+.fa-send:before,
+.fa-paper-plane:before {
+  content: "\f1d8";
+}
+.fa-send-o:before,
+.fa-paper-plane-o:before {
+  content: "\f1d9";
+}
+.fa-history:before {
+  content: "\f1da";
+}
+.fa-circle-thin:before {
+  content: "\f1db";
+}
+.fa-header:before {
+  content: "\f1dc";
+}
+.fa-paragraph:before {
+  content: "\f1dd";
+}
+.fa-sliders:before {
+  content: "\f1de";
+}
+.fa-share-alt:before {
+  content: "\f1e0";
+}
+.fa-share-alt-square:before {
+  content: "\f1e1";
+}
+.fa-bomb:before {
+  content: "\f1e2";
+}
+.fa-soccer-ball-o:before,
+.fa-futbol-o:before {
+  content: "\f1e3";
+}
+.fa-tty:before {
+  content: "\f1e4";
+}
+.fa-binoculars:before {
+  content: "\f1e5";
+}
+.fa-plug:before {
+  content: "\f1e6";
+}
+.fa-slideshare:before {
+  content: "\f1e7";
+}
+.fa-twitch:before {
+  content: "\f1e8";
+}
+.fa-yelp:before {
+  content: "\f1e9";
+}
+.fa-newspaper-o:before {
+  content: "\f1ea";
+}
+.fa-wifi:before {
+  content: "\f1eb";
+}
+.fa-calculator:before {
+  content: "\f1ec";
+}
+.fa-paypal:before {
+  content: "\f1ed";
+}
+.fa-google-wallet:before {
+  content: "\f1ee";
+}
+.fa-cc-visa:before {
+  content: "\f1f0";
+}
+.fa-cc-mastercard:before {
+  content: "\f1f1";
+}
+.fa-cc-discover:before {
+  content: "\f1f2";
+}
+.fa-cc-amex:before {
+  content: "\f1f3";
+}
+.fa-cc-paypal:before {
+  content: "\f1f4";
+}
+.fa-cc-stripe:before {
+  content: "\f1f5";
+}
+.fa-bell-slash:before {
+  content: "\f1f6";
+}
+.fa-bell-slash-o:before {
+  content: "\f1f7";
+}
+.fa-trash:before {
+  content: "\f1f8";
+}
+.fa-copyright:before {
+  content: "\f1f9";
+}
+.fa-at:before {
+  content: "\f1fa";
+}
+.fa-eyedropper:before {
+  content: "\f1fb";
+}
+.fa-paint-brush:before {
+  content: "\f1fc";
+}
+.fa-birthday-cake:before {
+  content: "\f1fd";
+}
+.fa-area-chart:before {
+  content: "\f1fe";
+}
+.fa-pie-chart:before {
+  content: "\f200";
+}
+.fa-line-chart:before {
+  content: "\f201";
+}
+.fa-lastfm:before {
+  content: "\f202";
+}
+.fa-lastfm-square:before {
+  content: "\f203";
+}
+.fa-toggle-off:before {
+  content: "\f204";
+}
+.fa-toggle-on:before {
+  content: "\f205";
+}
+.fa-bicycle:before {
+  content: "\f206";
+}
+.fa-bus:before {
+  content: "\f207";
+}
+.fa-ioxhost:before {
+  content: "\f208";
+}
+.fa-angellist:before {
+  content: "\f209";
+}
+.fa-cc:before {
+  content: "\f20a";
+}
+.fa-shekel:before,
+.fa-sheqel:before,
+.fa-ils:before {
+  content: "\f20b";
+}
+.fa-meanpath:before {
+  content: "\f20c";
+}

inst/www/shared/font-awesome/fonts/fontawesome-webfont.svg

@@ -14,10 +14,11 @@
 <glyph unicode="&#xae;" horiz-adv-x="1792" />
 <glyph unicode="&#xb4;" horiz-adv-x="1792" />
 <glyph unicode="&#xc6;" horiz-adv-x="1792" />
+<glyph unicode="&#xd8;" horiz-adv-x="1792" />
 <glyph unicode="&#x2000;" horiz-adv-x="768" />
-<glyph unicode="&#x2001;" />
+<glyph unicode="&#x2001;" horiz-adv-x="1537" />
 <glyph unicode="&#x2002;" horiz-adv-x="768" />
-<glyph unicode="&#x2003;" />
+<glyph unicode="&#x2003;" horiz-adv-x="1537" />
 <glyph unicode="&#x2004;" horiz-adv-x="512" />
 <glyph unicode="&#x2005;" horiz-adv-x="384" />
 <glyph unicode="&#x2006;" horiz-adv-x="256" />
@@ -30,7 +31,7 @@
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+<glyph unicode="&#x25fc;" horiz-adv-x="500" d="M0 0z" />
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@@ -52,7 +53,7 @@
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